Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0444130 | XP_039688626.1 | 82.629 | 213 | 32 | 2 | 332 | 540 | 418 | 629 | 3.69e-116 | 372 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0444130 | A0A396IP11 | 49.801 | 251 | 114 | 3 | 347 | 595 | 387 | 627 | 3.43e-65 | 238 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0015750 | Msa0444130 | 0.818262 | 2.148512e-52 | -8.615850e-47 |
| Msa0016570 | Msa0444130 | 0.873314 | 1.618006e-67 | -8.615850e-47 |
| Msa0016580 | Msa0444130 | 0.883431 | 4.513249e-71 | -8.615850e-47 |
| Msa0018650 | Msa0444130 | 0.802460 | 5.550609e-49 | -8.615850e-47 |
| Msa0064970 | Msa0444130 | 0.816440 | 5.525037e-52 | -8.615850e-47 |
| Msa0102070 | Msa0444130 | 0.827667 | 1.378135e-54 | -8.615850e-47 |
| Msa0110270 | Msa0444130 | 0.861650 | 8.841225e-64 | -8.615850e-47 |
| Msa0111510 | Msa0444130 | 0.807450 | 5.025280e-50 | -8.615850e-47 |
| Msa0123810 | Msa0444130 | 0.844865 | 5.800389e-59 | -8.615850e-47 |
| Msa0142220 | Msa0444130 | 0.842147 | 3.088382e-58 | -8.615850e-47 |
| Msa0153910 | Msa0444130 | 0.850294 | 1.863429e-60 | -8.615850e-47 |
| Msa0188460 | Msa0444130 | 0.803301 | 3.720715e-49 | -8.615850e-47 |
| Msa0216290 | Msa0444130 | 0.816164 | 6.367415e-52 | -8.615850e-47 |
| Msa0227480 | Msa0444130 | 0.811610 | 6.422979e-51 | -8.615850e-47 |
| Msa0231000 | Msa0444130 | 0.809353 | 1.972947e-50 | -8.615850e-47 |
| Msa0232850 | Msa0444130 | 0.832912 | 7.207981e-56 | -8.615850e-47 |
| Msa0233300 | Msa0444130 | 0.837983 | 3.765957e-57 | -8.615850e-47 |
| Msa0371730 | Msa0444130 | 0.846009 | 2.842306e-59 | -8.615850e-47 |
| Msa0384800 | Msa0444130 | 0.820243 | 7.601518e-53 | -8.615850e-47 |
| Msa0402290 | Msa0444130 | 0.807954 | 3.926589e-50 | -8.615850e-47 |
| Msa0414420 | Msa0444130 | 0.819102 | 1.385247e-52 | -8.615850e-47 |
| Msa0428000 | Msa0444130 | 0.807508 | 4.885156e-50 | -8.615850e-47 |
| Msa0435230 | Msa0444130 | 0.830146 | 3.461108e-55 | -8.615850e-47 |
| Msa0436780 | Msa0444130 | 0.838265 | 3.185876e-57 | -8.615850e-47 |
| Msa0436800 | Msa0444130 | 0.805327 | 1.408133e-49 | -8.615850e-47 |
| Msa0444130 | Msa0450000 | 0.818356 | 2.045729e-52 | -8.615850e-47 |
| Msa0444130 | Msa0452900 | 0.834660 | 2.635941e-56 | -8.615850e-47 |
| Msa0444130 | Msa0453120 | 0.851188 | 1.044036e-60 | -8.615850e-47 |
| Msa0444130 | Msa0466120 | 0.812724 | 3.670694e-51 | -8.615850e-47 |
| Msa0444130 | Msa0479340 | 0.817190 | 3.750328e-52 | -8.615850e-47 |
| Msa0444130 | Msa0493000 | 0.801701 | 7.952804e-49 | -8.615850e-47 |
| Msa0444130 | Msa0502340 | 0.811421 | 7.059155e-51 | -8.615850e-47 |
| Msa0444130 | Msa0506270 | 0.842745 | 2.143242e-58 | -8.615850e-47 |
| Msa0444130 | Msa0545700 | 0.812050 | 5.151475e-51 | -8.615850e-47 |
| Msa0444130 | Msa0564890 | 0.800968 | 1.123488e-48 | -8.615850e-47 |
| Msa0444130 | Msa0600700 | 0.805853 | 1.092468e-49 | -8.615850e-47 |
| Msa0444130 | Msa0604350 | 0.802462 | 5.546738e-49 | -8.615850e-47 |
| Msa0444130 | Msa0636170 | 0.814454 | 1.528392e-51 | -8.615850e-47 |
| Msa0444130 | Msa0650630 | 0.806693 | 7.266352e-50 | -8.615850e-47 |
| Msa0444130 | Msa0694370 | 0.842357 | 2.716849e-58 | -8.615850e-47 |
| Msa0444130 | Msa0726140 | 0.810048 | 1.398714e-50 | -8.615850e-47 |
| Msa0444130 | Msa0731550 | 0.801951 | 7.066122e-49 | -8.615850e-47 |
| Msa0444130 | Msa0735170 | 0.814985 | 1.165688e-51 | -8.615850e-47 |
| Msa0444130 | Msa0741990 | 0.822736 | 2.019378e-53 | -8.615850e-47 |
| Msa0444130 | Msa0743810 | 0.837337 | 5.516101e-57 | -8.615850e-47 |
| Msa0444130 | Msa0745060 | 0.810272 | 1.251566e-50 | -8.615850e-47 |
| Msa0444130 | Msa0762360 | 0.805659 | 1.199836e-49 | -8.615850e-47 |
| Msa0444130 | Msa0766630 | 0.830008 | 3.740278e-55 | -8.615850e-47 |
| Msa0444130 | Msa0767720 | 0.815550 | 8.731057e-52 | -8.615850e-47 |
| Msa0444130 | Msa0768370 | 0.813838 | 2.090361e-51 | -8.615850e-47 |
| Msa0444130 | Msa0775300 | 0.802948 | 4.402441e-49 | -8.615850e-47 |
| Msa0444130 | Msa0783160 | 0.820482 | 6.702766e-53 | -8.615850e-47 |
| Msa0444130 | Msa0789250 | 0.814820 | 1.267948e-51 | -8.615850e-47 |
| Msa0444130 | Msa0806090 | 0.803659 | 3.136341e-49 | -8.615850e-47 |
| Msa0444130 | Msa0811080 | 0.833698 | 4.592264e-56 | -8.615850e-47 |
| Msa0444130 | Msa0813400 | 0.800680 | 1.286277e-48 | -8.615850e-47 |
| Msa0444130 | Msa0820850 | 0.802424 | 5.648744e-49 | -8.615850e-47 |
| Msa0444130 | Msa0824590 | 0.809235 | 2.091307e-50 | -8.615850e-47 |
| Msa0444130 | Msa0824600 | 0.820498 | 6.644912e-53 | -8.615850e-47 |
| Msa0444130 | Msa0825860 | 0.802498 | 5.452902e-49 | -8.615850e-47 |
| Msa0444130 | Msa0843260 | 0.800976 | 1.119096e-48 | -8.615850e-47 |
| Msa0444130 | Msa0846210 | 0.806014 | 1.010216e-49 | -8.615850e-47 |
| Msa0444130 | Msa0858980 | 0.823626 | 1.251760e-53 | -8.615850e-47 |
| Msa0444130 | Msa0861130 | 0.801728 | 7.853434e-49 | -8.615850e-47 |
| Msa0444130 | Msa0885280 | 0.821116 | 4.789650e-53 | -8.615850e-47 |
| Msa0444130 | Msa0885290 | 0.804595 | 2.002895e-49 | -8.615850e-47 |
| Msa0444130 | Msa0888370 | 0.809071 | 2.267856e-50 | -8.615850e-47 |
| Msa0444130 | Msa0899430 | 0.824885 | 6.334219e-54 | -8.615850e-47 |
| Msa0444130 | Msa0899450 | 0.816812 | 4.560354e-52 | -8.615850e-47 |
| Msa0444130 | Msa0907260 | 0.848801 | 4.862187e-60 | -8.615850e-47 |
| Msa0444130 | Msa0927380 | 0.818677 | 1.729721e-52 | -8.615850e-47 |
| Msa0444130 | Msa0935640 | 0.813529 | 2.444537e-51 | -8.615850e-47 |
| Msa0444130 | Msa0954910 | 0.857682 | 1.382330e-62 | -8.615850e-47 |
| Msa0444130 | Msa0956270 | 0.853507 | 2.283648e-61 | -8.615850e-47 |
| Msa0444130 | Msa0958550 | 0.817715 | 2.855545e-52 | -8.615850e-47 |
| Msa0444130 | Msa0976670 | 0.815231 | 1.027975e-51 | -8.615850e-47 |
| Msa0444130 | Msa0989060 | 0.832829 | 7.559550e-56 | -8.615850e-47 |
| Msa0444130 | Msa0998690 | 0.806194 | 9.260978e-50 | -8.615850e-47 |
| Msa0444130 | Msa1000890 | 0.826614 | 2.462712e-54 | -8.615850e-47 |
| Msa0444130 | Msa1000900 | 0.833847 | 4.214499e-56 | -8.615850e-47 |
| Msa0444130 | Msa1014540 | 0.821924 | 3.117616e-53 | -8.615850e-47 |
| Msa0444130 | Msa1014990 | 0.840189 | 1.010087e-57 | -8.615850e-47 |
| Msa0444130 | Msa1016280 | 0.802781 | 4.766288e-49 | -8.615850e-47 |
| Msa0444130 | Msa1025360 | 0.824959 | 6.085054e-54 | -8.615850e-47 |
| Msa0444130 | Msa1025370 | 0.812893 | 3.371087e-51 | -8.615850e-47 |
| Msa0444130 | Msa1029240 | 0.839058 | 1.988354e-57 | -8.615850e-47 |
| Msa0444130 | Msa1044830 | 0.822068 | 2.887091e-53 | -8.615850e-47 |
| Msa0444130 | Msa1044840 | 0.822699 | 2.060296e-53 | -8.615850e-47 |
| Msa0444130 | Msa1060840 | 0.810515 | 1.109422e-50 | -8.615850e-47 |
| Msa0444130 | Msa1065570 | 0.801581 | 8.417739e-49 | -8.615850e-47 |
| Msa0444130 | Msa1075650 | 0.802147 | 6.438970e-49 | -8.615850e-47 |
| Msa0444130 | Msa1092990 | 0.821937 | 3.094911e-53 | -8.615850e-47 |
| Msa0444130 | Msa1099970 | 0.821228 | 4.513196e-53 | -8.615850e-47 |
| Msa0444130 | Msa1100980 | 0.811764 | 5.947879e-51 | -8.615850e-47 |
| Msa0444130 | Msa1109440 | 0.803661 | 3.134467e-49 | -8.615850e-47 |
| Msa0444130 | Msa1111150 | 0.833012 | 6.807844e-56 | -8.615850e-47 |
| Msa0444130 | Msa1121480 | 0.801820 | 7.519008e-49 | -8.615850e-47 |
| Msa0444130 | Msa1121490 | 0.812062 | 5.122076e-51 | -8.615850e-47 |
| Msa0444130 | Msa1136090 | 0.852948 | 3.300790e-61 | -8.615850e-47 |
| Msa0444130 | Msa1139510 | 0.807863 | 4.106999e-50 | -8.615850e-47 |
| Msa0444130 | Msa1146110 | 0.832941 | 7.091715e-56 | -8.615850e-47 |
| Msa0444130 | Msa1148020 | 0.809248 | 2.078630e-50 | -8.615850e-47 |
| Msa0444130 | Msa1160670 | 0.801865 | 7.358188e-49 | -8.615850e-47 |
| Msa0444130 | Msa1182090 | 0.802824 | 4.671024e-49 | -8.615850e-47 |
| Msa0444130 | Msa1187940 | 0.803503 | 3.379546e-49 | -8.615850e-47 |
| Msa0444130 | Msa1187950 | 0.851765 | 7.169746e-61 | -8.615850e-47 |
| Msa0444130 | Msa1192640 | 0.819376 | 1.200078e-52 | -8.615850e-47 |
| Msa0444130 | Msa1230430 | 0.810638 | 1.043578e-50 | -8.615850e-47 |
| Msa0444130 | Msa1249490 | 0.803150 | 3.998153e-49 | -8.615850e-47 |
| Msa0444130 | Msa1269670 | 0.804520 | 2.077024e-49 | -8.615850e-47 |
| Msa0444130 | Msa1270230 | 0.819822 | 9.491164e-53 | -8.615850e-47 |
| Msa0444130 | Msa1270240 | 0.804996 | 1.651607e-49 | -8.615850e-47 |
| Msa0444130 | Msa1273230 | 0.838144 | 3.423481e-57 | -8.615850e-47 |
| Msa0444130 | Msa1283330 | 0.839927 | 1.182387e-57 | -8.615850e-47 |
| Msa0444130 | Msa1284680 | 0.821670 | 3.569207e-53 | -8.615850e-47 |
| Msa0444130 | Msa1285930 | 0.846133 | 2.630562e-59 | -8.615850e-47 |
| Msa0444130 | Msa1287800 | 0.812323 | 4.492908e-51 | -8.615850e-47 |
| Msa0444130 | Msa1287810 | 0.827784 | 1.292385e-54 | -8.615850e-47 |
| Msa0444130 | Msa1342840 | 0.832252 | 1.050996e-55 | -8.615850e-47 |
| Msa0444130 | Msa1344520 | 0.821923 | 3.117930e-53 | -8.615850e-47 |
| Msa0444130 | Msa1360610 | 0.802768 | 4.796160e-49 | -8.615850e-47 |
| Msa0444130 | Msa1366810 | 0.810848 | 9.399923e-51 | -8.615850e-47 |
| Msa0444130 | Msa1369430 | 0.805124 | 1.553501e-49 | -8.615850e-47 |
| Msa0444130 | Msa1382690 | 0.813575 | 2.387808e-51 | -8.615850e-47 |
| Msa0444130 | Msa1386330 | 0.809732 | 1.635795e-50 | -8.615850e-47 |
| Msa0444130 | Msa1388930 | 0.800387 | 1.476031e-48 | -8.615850e-47 |
| Msa0444130 | Msa1397860 | 0.801535 | 8.602610e-49 | -8.615850e-47 |
| Msa0444130 | Msa1402790 | 0.825127 | 5.551867e-54 | -8.615850e-47 |
| Msa0444130 | Msa1404000 | 0.818643 | 1.761338e-52 | -8.615850e-47 |
| Msa0444130 | Msa1422180 | 0.844820 | 5.967408e-59 | -8.615850e-47 |
| Msa0444130 | Msa1433120 | 0.807478 | 4.956000e-50 | -8.615850e-47 |
| Msa0444130 | Msa1451570 | 0.816087 | 6.624655e-52 | -8.615850e-47 |
| Msa0444130 | Msa1460830 | 0.801661 | 8.104489e-49 | -8.615850e-47 |
| Msa0247260 | Msa0444130 | 0.811024 | 8.607690e-51 | -8.615850e-47 |
| Msa0251320 | Msa0444130 | 0.821293 | 4.360383e-53 | -8.615850e-47 |
| Msa0267000 | Msa0444130 | 0.813745 | 2.191299e-51 | -8.615850e-47 |
| Msa0267010 | Msa0444130 | 0.816267 | 6.038240e-52 | -8.615850e-47 |
| Msa0270520 | Msa0444130 | 0.835787 | 1.368979e-56 | -8.615850e-47 |
| Msa0304170 | Msa0444130 | 0.826063 | 3.332418e-54 | -8.615850e-47 |
| Msa0306460 | Msa0444130 | 0.871051 | 9.169962e-67 | -8.615850e-47 |
| Msa0309020 | Msa0444130 | 0.828484 | 8.762236e-55 | -8.615850e-47 |
| Msa0337900 | Msa0444130 | 0.803782 | 2.958207e-49 | -8.615850e-47 |
| Msa0342240 | Msa0444130 | 0.809218 | 2.109398e-50 | -8.615850e-47 |
| Msa0360510 | Msa0444130 | 0.824355 | 8.444860e-54 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0444130 | MtrunA17_Chr3g0081981 | 49.801 | 251 | 114 | 3 | 347 | 595 | 387 | 627 | 6.60e-69 | 238 |
| Msa0444130 | MtrunA17_Chr6g0462901 | 44.130 | 247 | 132 | 2 | 347 | 587 | 831 | 1077 | 1.88e-61 | 222 |
| Msa0444130 | MtrunA17_Chr6g0462901 | 32.292 | 288 | 138 | 14 | 1 | 267 | 1 | 252 | 3.22e-22 | 102 |
| Msa0444130 | MtrunA17_Chr2g0281381 | 55.152 | 165 | 70 | 2 | 347 | 508 | 786 | 949 | 1.25e-52 | 196 |
| Msa0444130 | MtrunA17_Chr2g0281381 | 44.860 | 107 | 57 | 1 | 1 | 107 | 1 | 105 | 2.08e-29 | 125 |
| Msa0444130 | MtrunA17_Chr8g0362121 | 52.206 | 136 | 46 | 3 | 1 | 135 | 1 | 118 | 5.26e-42 | 148 |
| Msa0444130 | MtrunA17_Chr6g0455001 | 42.857 | 168 | 89 | 1 | 347 | 507 | 237 | 404 | 6.46e-38 | 146 |
| Msa0444130 | MtrunA17_Chr4g0027621 | 39.189 | 148 | 75 | 4 | 1 | 146 | 1 | 135 | 3.44e-31 | 120 |
| Msa0444130 | MtrunA17_Chr2g0278781 | 35.802 | 162 | 103 | 1 | 347 | 507 | 14 | 175 | 1.03e-27 | 111 |
| Msa0444130 | MtrunA17_Chr6g0480081 | 38.281 | 128 | 79 | 0 | 379 | 506 | 6 | 133 | 3.01e-27 | 112 |
| Msa0444130 | MtrunA17_Chr4g0018901 | 29.814 | 322 | 182 | 10 | 259 | 575 | 142 | 424 | 4.30e-27 | 116 |
| Msa0444130 | MtrunA17_Chr3g0101791 | 37.956 | 137 | 70 | 4 | 12 | 146 | 4 | 127 | 1.16e-26 | 107 |
| Msa0444130 | MtrunA17_Chr1g0211111 | 34.161 | 161 | 105 | 1 | 347 | 507 | 33 | 192 | 1.29e-25 | 110 |
| Msa0444130 | MtrunA17_Chr6g0477881 | 33.540 | 161 | 103 | 2 | 347 | 507 | 744 | 900 | 1.78e-25 | 112 |
| Msa0444130 | MtrunA17_Chr6g0477921 | 33.540 | 161 | 103 | 2 | 347 | 507 | 744 | 900 | 1.96e-25 | 112 |
| Msa0444130 | MtrunA17_Chr8g0338951 | 33.962 | 159 | 94 | 1 | 359 | 506 | 120 | 278 | 6.64e-25 | 106 |
| Msa0444130 | MtrunA17_Chr6g0465431 | 32.020 | 203 | 101 | 6 | 2 | 198 | 22 | 193 | 8.54e-25 | 102 |
| Msa0444130 | MtrunA17_Chr5g0421581 | 30.592 | 304 | 126 | 12 | 1 | 283 | 1 | 240 | 1.16e-22 | 97.8 |
| Msa0444130 | MtrunA17_Chr7g0235011 | 31.679 | 262 | 140 | 12 | 1 | 234 | 122 | 372 | 1.88e-22 | 99.8 |
| Msa0444130 | MtrunA17_Chr8g0373261 | 28.436 | 211 | 141 | 2 | 347 | 549 | 729 | 937 | 3.96e-22 | 102 |
| Msa0444130 | MtrunA17_Chr8g0362211 | 29.043 | 303 | 161 | 10 | 1 | 284 | 1 | 268 | 5.91e-22 | 96.7 |
| Msa0444130 | MtrunA17_Chr4g0049811 | 31.609 | 174 | 103 | 5 | 1 | 172 | 15 | 174 | 2.39e-21 | 92.0 |
| Msa0444130 | MtrunA17_Chr8g0356631 | 35.652 | 115 | 68 | 2 | 1 | 111 | 27 | 139 | 1.93e-20 | 92.8 |
| Msa0444130 | MtrunA17_Chr5g0430351 | 37.755 | 98 | 59 | 1 | 1 | 98 | 1 | 96 | 2.18e-19 | 84.0 |
| Msa0444130 | MtrunA17_Chr2g0303271 | 29.560 | 318 | 149 | 12 | 1 | 312 | 1 | 249 | 4.92e-19 | 87.8 |
| Msa0444130 | MtrunA17_Chr2g0297981 | 28.440 | 218 | 116 | 6 | 1 | 209 | 1 | 187 | 5.31e-17 | 79.7 |
| Msa0444130 | MtrunA17_Chr1g0190521 | 31.387 | 137 | 76 | 3 | 383 | 509 | 639 | 767 | 2.33e-16 | 83.2 |
| Msa0444130 | MtrunA17_Chr4g0049281 | 35.606 | 132 | 69 | 4 | 383 | 507 | 450 | 572 | 3.85e-16 | 82.0 |
| Msa0444130 | MtrunA17_Chr7g0275141 | 29.310 | 174 | 101 | 4 | 347 | 509 | 432 | 594 | 4.24e-16 | 82.0 |
| Msa0444130 | MtrunA17_Chr4g0069321 | 33.083 | 133 | 69 | 3 | 383 | 508 | 630 | 749 | 2.60e-15 | 79.7 |
| Msa0444130 | MtrunA17_Chr3g0081991 | 37.755 | 98 | 52 | 4 | 18 | 111 | 23 | 115 | 4.15e-15 | 78.2 |
| Msa0444130 | MtrunA17_Chr1g0190511 | 30.657 | 137 | 77 | 3 | 383 | 509 | 534 | 662 | 9.47e-15 | 77.8 |
| Msa0444130 | MtrunA17_Chr1g0176871 | 33.663 | 101 | 65 | 1 | 1 | 101 | 5 | 103 | 6.69e-14 | 68.2 |
| Msa0444130 | MtrunA17_Chr1g0171951 | 36.471 | 85 | 52 | 1 | 18 | 102 | 7 | 89 | 1.20e-13 | 72.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0444130 | AT1G06740.1 | 28.788 | 132 | 79 | 4 | 383 | 509 | 604 | 725 | 3.23e-11 | 67.0 |
Find 174 sgRNAs with CRISPR-Local
Find 351 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCAACCATAATGGATATTA+TGG | 0.209633 | 3_3:-16910943 | Msa0444130:CDS |
| AAGGAAAATGACAAAGTTTC+TGG | 0.231571 | 3_3:-16910304 | Msa0444130:CDS |
| TGGAAGTAGTTGATTGGTTT+TGG | 0.236859 | 3_3:+16907483 | None:intergenic |
| TGGAAGCAGTTGATTGGTTA+TGG | 0.238025 | 3_3:+16907417 | None:intergenic |
| GTAGAAAATGTTTGAGTAAA+AGG | 0.254475 | 3_3:+16907371 | None:intergenic |
| TTTCTTGTTTGCTTGAGATT+TGG | 0.264259 | 3_3:+16907313 | None:intergenic |
| TTATCCCCTTGTTGGTCATT+TGG | 0.277211 | 3_3:+16910586 | None:intergenic |
| AGAGGAAAGTGGGCAAGATT+TGG | 0.282082 | 3_3:-16910389 | Msa0444130:CDS |
| TGTGGTGTTTGGACCCCTTT+TGG | 0.286987 | 3_3:+16907166 | None:intergenic |
| CATAGAGATCTACCATTAAC+AGG | 0.292696 | 3_3:+16907782 | None:intergenic |
| TTTGATGGTTTCAACCATAA+TGG | 0.293631 | 3_3:-16910952 | Msa0444130:CDS |
| ATGATAGAGTATTATGGTTT+AGG | 0.293774 | 3_3:-16910673 | Msa0444130:CDS |
| CATATGATATTCCCTGTTAA+TGG | 0.299185 | 3_3:-16907794 | Msa0444130:CDS |
| GAAAGAGAAAATGAAACATT+TGG | 0.303844 | 3_3:-16910538 | Msa0444130:CDS |
| AACTTCTGTCTTGTGGTGTT+TGG | 0.310998 | 3_3:+16907155 | None:intergenic |
| CCCCTACATTATCCCCTTGT+TGG | 0.316869 | 3_3:+16910578 | None:intergenic |
| CAAGACCATAATATCCATTA+TGG | 0.321338 | 3_3:+16910938 | None:intergenic |
| CTACCTGGTTGTCTTCTAAT+AGG | 0.321407 | 3_3:+16907725 | None:intergenic |
| ACAGAAAATTGTTCCCTAGA+TGG | 0.324070 | 3_3:+16907971 | None:intergenic |
| GACATGACAGATTCTTCATT+TGG | 0.325046 | 3_3:+16907091 | None:intergenic |
| TGTAGGAAGTGGTTGTTGAC+TGG | 0.326629 | 3_3:-16907923 | Msa0444130:CDS |
| GTTGAGATGATAGAGTATTA+TGG | 0.329709 | 3_3:-16910679 | Msa0444130:CDS |
| GGAAGCAGTTGATTGGTTAT+GGG | 0.340295 | 3_3:+16907418 | None:intergenic |
| GAGGAAAGTGGGCAAGATTT+GGG | 0.348181 | 3_3:-16910388 | Msa0444130:CDS |
| GGTAAAGATGTTAGTGGAAG+TGG | 0.349752 | 3_3:-16910481 | Msa0444130:CDS |
| TATTTGCTGTATCAGGTATA+TGG | 0.353361 | 3_3:-16907882 | Msa0444130:CDS |
| TCTGTTGGTGAAGAAGTAAT+TGG | 0.354560 | 3_3:-16910454 | Msa0444130:CDS |
| GATGTGAGTGTAAATCAATT+TGG | 0.359257 | 3_3:-16910427 | Msa0444130:CDS |
| TCAAAGTAGCACCAGTAATC+TGG | 0.360873 | 3_3:+16910895 | None:intergenic |
| GGAAGTAGCAGCTACTTTCT+TGG | 0.361596 | 3_3:+16907241 | None:intergenic |
| GGCTGAAGAAATGGTGCTAT+TGG | 0.362206 | 3_3:-16910797 | Msa0444130:CDS |
| GGATGAACAGGCTGCTTCCT+TGG | 0.375806 | 3_3:+16909881 | None:intergenic |
| CTGTTAATGGTAGATCTCTA+TGG | 0.377713 | 3_3:-16907781 | Msa0444130:CDS |
| GCTACTTTCTTGGAAGCATT+TGG | 0.382436 | 3_3:+16907251 | None:intergenic |
| AATTTGTTCCTGATGAATAT+AGG | 0.383108 | 3_3:-16907844 | Msa0444130:CDS |
| ATTGAGTGACAGTGGTGGTA+TGG | 0.388035 | 3_3:+16907519 | None:intergenic |
| TGGTTTAGGTGAAGACAATA+TGG | 0.388319 | 3_3:-16910659 | Msa0444130:CDS |
| GTATGGGTGGTGGTAGTAGA+TGG | 0.395295 | 3_3:+16907536 | None:intergenic |
| AAAGAGAAAATGAAACATTT+GGG | 0.395659 | 3_3:-16910537 | Msa0444130:CDS |
| AAACAAGAGACTGCTCTTGT+AGG | 0.399342 | 3_3:-16907940 | Msa0444130:CDS |
| GGTTATGTGATCCAGATTAC+TGG | 0.401072 | 3_3:-16910906 | Msa0444130:CDS |
| AAGAAGCTATTGAATCAATC+TGG | 0.401121 | 3_3:-16910837 | Msa0444130:CDS |
| TTAGGGGACAAGAATGTAAC+AGG | 0.401306 | 3_3:-16910334 | Msa0444130:CDS |
| TACATGGTATTTGCTGTATC+AGG | 0.403009 | 3_3:-16907889 | Msa0444130:CDS |
| TTTGCGGTGGTCTGTCACTA+TGG | 0.409280 | 3_3:-16910982 | Msa0444130:CDS |
| CACCACCACCAATGAAGAAA+AGG | 0.411701 | 3_3:-16909910 | Msa0444130:CDS |
| ACCATTTCTTCAGCCATGTA+TGG | 0.411900 | 3_3:+16910805 | None:intergenic |
| GTCCCCTAACCCAACTTCCT+TGG | 0.415217 | 3_3:+16910348 | None:intergenic |
| TGGTGCTACTTTGATATCAT+AGG | 0.415392 | 3_3:-16910886 | Msa0444130:CDS |
| ACTGCCAAGGAAGTTGGGTT+AGG | 0.420261 | 3_3:-16910352 | Msa0444130:CDS |
| GATTGGTTATGGGTTGGTGC+AGG | 0.420802 | 3_3:+16907428 | None:intergenic |
| GACAGAAGTTGCCATTCAAA+AGG | 0.422049 | 3_3:-16907142 | Msa0444130:CDS |
| TCAGTAGCATCTGGATGAAC+AGG | 0.422309 | 3_3:+16909869 | None:intergenic |
| CTTTCCTCTTCACCAACAGT+TGG | 0.423385 | 3_3:+16910403 | None:intergenic |
| GAGGATGGTCCTACTGATAA+TGG | 0.425224 | 3_3:-16910631 | Msa0444130:CDS |
| GACAGTGGTGGTATGGGTGG+TGG | 0.425417 | 3_3:+16907526 | None:intergenic |
| CTTTCTCTCCTATATTCATC+AGG | 0.428617 | 3_3:+16907836 | None:intergenic |
| ATGTGAGTGTAAATCAATTT+GGG | 0.431905 | 3_3:-16910426 | Msa0444130:CDS |
| CAGATTCTTCATTTGGAGGT+TGG | 0.435717 | 3_3:+16907098 | None:intergenic |
| GCTACTACTGCCAAGGAAGT+TGG | 0.436988 | 3_3:-16910358 | Msa0444130:CDS |
| GCTGCTCCATCAGTAGCATC+TGG | 0.437956 | 3_3:+16909860 | None:intergenic |
| CTGGTTGTCTTCTAATAGGT+GGG | 0.440877 | 3_3:+16907729 | None:intergenic |
| CAAATGAAGAGAGCAAGGTT+TGG | 0.441697 | 3_3:-16907650 | Msa0444130:CDS |
| TGGTTATGGGTTGGTGCAGG+TGG | 0.448662 | 3_3:+16907431 | None:intergenic |
| CTGCCAAGGAAGTTGGGTTA+GGG | 0.449914 | 3_3:-16910351 | Msa0444130:CDS |
| AGCTGAAGTCTGTGCATTTG+TGG | 0.452769 | 3_3:+16907340 | None:intergenic |
| TGTGGGTGGAAGCAGTTGAT+TGG | 0.452954 | 3_3:+16907411 | None:intergenic |
| CTACTACTGCCAAGGAAGTT+GGG | 0.453516 | 3_3:-16910357 | Msa0444130:CDS |
| TGGTGGTGGAAGTAGTTGAT+TGG | 0.463775 | 3_3:+16907477 | None:intergenic |
| AGTGTTCAAGATGTACATTT+TGG | 0.468900 | 3_3:-16910190 | Msa0444130:CDS |
| AATTGATTTACACTCACATC+TGG | 0.469390 | 3_3:+16910430 | None:intergenic |
| GTAGGAAGTGGTTGTTGACT+GGG | 0.470125 | 3_3:-16907922 | Msa0444130:CDS |
| ATGTAGCAGCAAGCTCCAAA+AGG | 0.472055 | 3_3:-16907181 | Msa0444130:CDS |
| GACAGTATTTGTAGTGGTGG+TGG | 0.472655 | 3_3:+16907463 | None:intergenic |
| CCATCTTCTCCCTCTACATC+AGG | 0.477452 | 3_3:+16910250 | None:intergenic |
| AATGACAAAGTTTCTGGTGT+TGG | 0.479863 | 3_3:-16910298 | Msa0444130:CDS |
| ACAAGGGGATAATGTAGGGG+TGG | 0.483027 | 3_3:-16910575 | Msa0444130:CDS |
| CCTGGTTGTCTTCTAATAGG+TGG | 0.484072 | 3_3:+16907728 | None:intergenic |
| ACAGAAGTTGCCATTCAAAA+GGG | 0.484696 | 3_3:-16907141 | Msa0444130:CDS |
| ACCAACAAGGGGATAATGTA+GGG | 0.490231 | 3_3:-16910579 | Msa0444130:CDS |
| TGTAGCAGCAAGCTCCAAAA+GGG | 0.490764 | 3_3:-16907180 | Msa0444130:CDS |
| ACCACCACCAATGAAGAAAA+GGG | 0.493113 | 3_3:-16909909 | Msa0444130:CDS |
| ACCATACATGGCTGAAGAAA+TGG | 0.495920 | 3_3:-16910806 | Msa0444130:CDS |
| TTGAGTGACAGTGGTGGTAT+GGG | 0.496972 | 3_3:+16907520 | None:intergenic |
| AAAGCTGGTAAAGATGTTAG+TGG | 0.497765 | 3_3:-16910487 | Msa0444130:CDS |
| ATACAAACAAATGGCTTACA+AGG | 0.501386 | 3_3:-16908208 | Msa0444130:intron |
| CCTGATGTAGAGGGAGAAGA+TGG | 0.507640 | 3_3:-16910250 | Msa0444130:CDS |
| GAATGTAACAGGGTGTGATA+AGG | 0.509499 | 3_3:-16910323 | Msa0444130:CDS |
| ATTATGGTCTTGAGAGCACT+TGG | 0.512400 | 3_3:-16910927 | Msa0444130:CDS |
| CTGTTGGTGAAGAAGTAATT+GGG | 0.513995 | 3_3:-16910453 | Msa0444130:CDS |
| TAGATGGATTATCAGTGGCT+TGG | 0.516315 | 3_3:+16907552 | None:intergenic |
| GGCTATGATGAGGGAGGTAA+TGG | 0.516479 | 3_3:-16910130 | Msa0444130:CDS |
| GGTTGTCTTCTAATAGGTGG+GGG | 0.517907 | 3_3:+16907731 | None:intergenic |
| CTGATGAATATAGGAGAGAA+AGG | 0.521306 | 3_3:-16907835 | Msa0444130:CDS |
| GAATGGCAACTTCTGTCTTG+TGG | 0.523297 | 3_3:+16907148 | None:intergenic |
| TGGGCCAACTGTTGGTGAAG+AGG | 0.523555 | 3_3:-16910407 | Msa0444130:CDS |
| AGTGACAGTGGTGGTATGGG+TGG | 0.524748 | 3_3:+16907523 | None:intergenic |
| GACCAACAAGGGGATAATGT+AGG | 0.525789 | 3_3:-16910580 | Msa0444130:CDS |
| AGGTAAGGAGCCTGATGTAG+AGG | 0.526934 | 3_3:-16910260 | Msa0444130:CDS |
| AGGTTGCTTATACAAACAAA+TGG | 0.527084 | 3_3:-16908217 | Msa0444130:CDS |
| AGTTGCAGTAGCTTTAGTCT+TGG | 0.529545 | 3_3:+16907220 | None:intergenic |
| GAGACTGCTCTTGTAGGAAG+TGG | 0.531754 | 3_3:-16907934 | Msa0444130:CDS |
| GTTCATGGAGGATAAGTTTG+CGG | 0.534986 | 3_3:-16910998 | None:intergenic |
| CAAGGGGATAATGTAGGGGT+GGG | 0.545301 | 3_3:-16910574 | Msa0444130:CDS |
| GAGGGAGGTAATGGTGATGA+GGG | 0.545582 | 3_3:-16910121 | Msa0444130:CDS |
| AGTTGCAACAGAATTAGTCT+TGG | 0.546087 | 3_3:+16907277 | None:intergenic |
| AATGACAGTATTTGTAGTGG+TGG | 0.547358 | 3_3:+16907460 | None:intergenic |
| GCAGTTGATTGGTTATGGGT+TGG | 0.547625 | 3_3:+16907422 | None:intergenic |
| GGAGGTAATGGTGATGAGGG+AGG | 0.549314 | 3_3:-16910118 | Msa0444130:CDS |
| TGGTTGTCTTCTAATAGGTG+GGG | 0.552189 | 3_3:+16907730 | None:intergenic |
| ATGACAGATTCTTCATTTGG+AGG | 0.562125 | 3_3:+16907094 | None:intergenic |
| TGCCAAGGAAGTTGGGTTAG+GGG | 0.565518 | 3_3:-16910350 | Msa0444130:CDS |
| ATTTCCACTTCAACAACAGT+GGG | 0.566711 | 3_3:+16910514 | None:intergenic |
| TGCATGCTTAATGACTGCTT+TGG | 0.568632 | 3_3:-16910151 | Msa0444130:CDS |
| GAAAATGTTTGAGTAAAAGG+TGG | 0.570242 | 3_3:+16907374 | None:intergenic |
| GTTCATCCAGATGCTACTGA+TGG | 0.572482 | 3_3:-16909866 | Msa0444130:CDS |
| ACTGGGCTACCATGTGTACA+TGG | 0.577183 | 3_3:-16907905 | Msa0444130:CDS |
| ATTCACAAATGAAGAGAGCA+AGG | 0.578253 | 3_3:-16907655 | Msa0444130:CDS |
| GACTGCTTTGGCTATGATGA+GGG | 0.579326 | 3_3:-16910139 | Msa0444130:CDS |
| TCATCTCTCAGCATTTCAGA+TGG | 0.584019 | 3_3:+16907677 | None:intergenic |
| AGTGGAAGTGGGCCATCTGT+TGG | 0.584738 | 3_3:-16910469 | Msa0444130:CDS |
| TGAGGGAGGTAATGGTGATG+AGG | 0.585201 | 3_3:-16910122 | Msa0444130:CDS |
| TGGGCCCACTGTTGTTGAAG+TGG | 0.586112 | 3_3:-16910518 | Msa0444130:CDS |
| TGTAGCAGATGTAAGTCAGT+TGG | 0.587311 | 3_3:-16907620 | Msa0444130:CDS |
| ACTGTTGGTGAAGAGGAAAG+TGG | 0.588994 | 3_3:-16910400 | Msa0444130:CDS |
| GGTAAGGAGCCTGATGTAGA+GGG | 0.595711 | 3_3:-16910259 | Msa0444130:CDS |
| TTTGGAGTTTCATCAACAGT+GGG | 0.595937 | 3_3:+16910604 | None:intergenic |
| AAAAGGTGGTTGACTACAAG+TGG | 0.596740 | 3_3:+16907388 | None:intergenic |
| CTGTTGGTGAAGAGGAAAGT+GGG | 0.596844 | 3_3:-16910399 | Msa0444130:CDS |
| TTGAATGACAGTATTTGTAG+TGG | 0.599804 | 3_3:+16907457 | None:intergenic |
| TGGTTGACTACAAGTGGTGT+GGG | 0.601379 | 3_3:+16907394 | None:intergenic |
| GACAATATGGCTGATGAGGA+TGG | 0.602712 | 3_3:-16910646 | Msa0444130:CDS |
| CAAGCTATAGCACAAACTGA+TGG | 0.608583 | 3_3:-16910748 | Msa0444130:CDS |
| AAGGGGATAATGTAGGGGTG+GGG | 0.610266 | 3_3:-16910573 | Msa0444130:CDS |
| GTTGACAACACTGTTACAGC+AGG | 0.611096 | 3_3:-16910088 | Msa0444130:intron |
| AATCAATTTGGGCCAACTGT+TGG | 0.611832 | 3_3:-16910415 | Msa0444130:CDS |
| ATTACTTCTTCACCAACAGA+TGG | 0.612158 | 3_3:+16910457 | None:intergenic |
| ATTTGGAGTTTCATCAACAG+TGG | 0.616368 | 3_3:+16910603 | None:intergenic |
| GTAAAGATGTTAGTGGAAGT+GGG | 0.617286 | 3_3:-16910480 | Msa0444130:CDS |
| TGAAAATGCTACTACTGCCA+AGG | 0.619395 | 3_3:-16910365 | Msa0444130:CDS |
| CCACCTATTAGAAGACAACC+AGG | 0.619728 | 3_3:-16907728 | Msa0444130:CDS |
| TGAAGACAATATGGCTGATG+AGG | 0.621333 | 3_3:-16910650 | Msa0444130:CDS |
| CAGCAAATACCATGTACACA+TGG | 0.622686 | 3_3:+16907896 | None:intergenic |
| CATGGAGGATAAGTTTGCGG+TGG | 0.627692 | 3_3:-16910995 | Msa0444130:CDS |
| AAACTCCAAATGACCAACAA+GGG | 0.631233 | 3_3:-16910591 | Msa0444130:CDS |
| TATTTCCACTTCAACAACAG+TGG | 0.632028 | 3_3:+16910513 | None:intergenic |
| CATCTCTCAGCATTTCAGAT+GGG | 0.633485 | 3_3:+16907678 | None:intergenic |
| GAAACTCCAAATGACCAACA+AGG | 0.634637 | 3_3:-16910592 | Msa0444130:CDS |
| TGACTGCTTTGGCTATGATG+AGG | 0.638322 | 3_3:-16910140 | Msa0444130:CDS |
| TAATGATGATTGTGCAAGGA+GGG | 0.638335 | 3_3:-16910773 | Msa0444130:CDS |
| GTGGGACCTCCATTATCAGT+AGG | 0.642267 | 3_3:+16910622 | None:intergenic |
| CAGAAGTTGCCATTCAAAAG+GGG | 0.649875 | 3_3:-16907140 | Msa0444130:CDS |
| TCTCAAGCAAACAAGAAACA+AGG | 0.651667 | 3_3:-16907308 | Msa0444130:CDS |
| GTGGTTGACTACAAGTGGTG+TGG | 0.651789 | 3_3:+16907393 | None:intergenic |
| AACTCCAAATGACCAACAAG+GGG | 0.654308 | 3_3:-16910590 | Msa0444130:CDS |
| TGAAGAAAAGGGGTAGACCA+AGG | 0.656393 | 3_3:-16909898 | Msa0444130:CDS |
| TTGACTACAAGTGGTGTGGG+TGG | 0.657652 | 3_3:+16907397 | None:intergenic |
| GGTAGTAGATGGATTATCAG+TGG | 0.659379 | 3_3:+16907547 | None:intergenic |
| CCACCACCAATGAAGAAAAG+GGG | 0.661048 | 3_3:-16909908 | Msa0444130:CDS |
| TGCAGGTGATTGAGTGACAG+TGG | 0.666942 | 3_3:+16907511 | None:intergenic |
| CTATTAGAAGACAACCAGGT+AGG | 0.671139 | 3_3:-16907724 | Msa0444130:CDS |
| TGGATAATGATGATTGTGCA+AGG | 0.680562 | 3_3:-16910777 | Msa0444130:CDS |
| GATGGTCCTACTGATAATGG+AGG | 0.684458 | 3_3:-16910628 | Msa0444130:CDS |
| AGGGAATGATAATGATGCTG+AGG | 0.686901 | 3_3:-16909942 | Msa0444130:CDS |
| GTAGCAGCAAGCTCCAAAAG+GGG | 0.688503 | 3_3:-16907179 | Msa0444130:CDS |
| TGCTTTGGCTATGATGAGGG+AGG | 0.690195 | 3_3:-16910136 | Msa0444130:CDS |
| ATAGAGATCTACCATTAACA+GGG | 0.702165 | 3_3:+16907783 | None:intergenic |
| CCAACAAGGGGATAATGTAG+GGG | 0.709630 | 3_3:-16910578 | Msa0444130:CDS |
| GCGGTGGTCTGTCACTATGG+TGG | 0.716755 | 3_3:-16910979 | Msa0444130:CDS |
| CAAGCAAACAAGAAACAAGG+TGG | 0.728376 | 3_3:-16907305 | Msa0444130:CDS |
| ATAATGATGATTGTGCAAGG+AGG | 0.728633 | 3_3:-16910774 | Msa0444130:CDS |
| TAGGGGACAAGAATGTAACA+GGG | 0.758218 | 3_3:-16910333 | Msa0444130:CDS |
| AGGTGATTGAGTGACAGTGG+TGG | 0.782162 | 3_3:+16907514 | None:intergenic |
| TATGTGTGAAACAGGCGTTG+TGG | 0.784442 | 3_3:-16908025 | Msa0444130:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTAATTTCTTGTGAATATA+TGG | - | chr3_3:16909338-16909357 | Msa0444130:intron | 15.0% |
| !!! | TTTCTAAAATGGTATTAATT+TGG | - | chr3_3:16909957-16909976 | Msa0444130:intron | 15.0% |
| !! | ATACTATATAAGAAAGATAA+AGG | + | chr3_3:16909984-16910003 | None:intergenic | 15.0% |
| !!! | TTTCTTATATAGTATCATTT+TGG | - | chr3_3:16909989-16910008 | Msa0444130:intron | 15.0% |
| !! | AAAGAGAAAATGAAACATTT+GGG | - | chr3_3:16907563-16907582 | Msa0444130:CDS | 20.0% |
| !! | TTATAATCTAACATCTTCTT+TGG | + | chr3_3:16908471-16908490 | None:intergenic | 20.0% |
| !! | GTGCTTATATAGTATTAATT+TGG | - | chr3_3:16909925-16909944 | Msa0444130:CDS | 20.0% |
| !!! | ATACCATTTTAGAAAGATAA+AGG | + | chr3_3:16909952-16909971 | None:intergenic | 20.0% |
| !! | CTTTAAACCAGAAATTATTA+AGG | + | chr3_3:16910016-16910035 | None:intergenic | 20.0% |
| !!! | TTCAACCATAATGGATATTA+TGG | - | chr3_3:16907157-16907176 | Msa0444130:CDS | 25.0% |
| !! | ATAGGTAATCTAGATGTTTT+AGG | - | chr3_3:16907232-16907251 | Msa0444130:CDS | 25.0% |
| !!! | TCTAGATGTTTTAGGTTATA+AGG | - | chr3_3:16907240-16907259 | Msa0444130:CDS | 25.0% |
| !! | TCTATCATCTCAACAATTTT+TGG | + | chr3_3:16907415-16907434 | None:intergenic | 25.0% |
| !! | ATGATAGAGTATTATGGTTT+AGG | - | chr3_3:16907427-16907446 | Msa0444130:CDS | 25.0% |
| ! | GAAAGAGAAAATGAAACATT+TGG | - | chr3_3:16907562-16907581 | Msa0444130:CDS | 25.0% |
| ! | ATGTGAGTGTAAATCAATTT+GGG | - | chr3_3:16907674-16907693 | Msa0444130:CDS | 25.0% |
| ! | TAAGAAAAATGACAAAGGTA+AGG | - | chr3_3:16907825-16907844 | Msa0444130:CDS | 25.0% |
| !!! | CTTTTGTTTTGAGTTATATG+AGG | - | chr3_3:16907873-16907892 | Msa0444130:CDS | 25.0% |
| ! | ACATATAAACATAGTAGTAG+TGG | + | chr3_3:16908057-16908076 | None:intergenic | 25.0% |
| ! | ATGTTGTTAATGTATTATGC+AGG | - | chr3_3:16908138-16908157 | Msa0444130:intron | 25.0% |
| ! | TGTTGTTAATGTATTATGCA+GGG | - | chr3_3:16908139-16908158 | Msa0444130:intron | 25.0% |
| ! | AGAAGATGTTAGATTATAAG+TGG | - | chr3_3:16908472-16908491 | Msa0444130:intron | 25.0% |
| ! | GAAGATGTTAGATTATAAGT+GGG | - | chr3_3:16908473-16908492 | Msa0444130:intron | 25.0% |
| ! | TGAAATTTCTGAATTCTAAG+TGG | - | chr3_3:16908730-16908749 | Msa0444130:intron | 25.0% |
| !! | TTTTGGTCCTTAATAATTTC+TGG | - | chr3_3:16910006-16910025 | Msa0444130:intron | 25.0% |
| !! | AATTTGTTCCTGATGAATAT+AGG | - | chr3_3:16910256-16910275 | Msa0444130:CDS | 25.0% |
| ! | GTAGAAAATGTTTGAGTAAA+AGG | + | chr3_3:16910732-16910751 | None:intergenic | 25.0% |
| ! | TTTGATGGTTTCAACCATAA+TGG | - | chr3_3:16907148-16907167 | Msa0444130:CDS | 30.0% |
| CAAGACCATAATATCCATTA+TGG | + | chr3_3:16907165-16907184 | None:intergenic | 30.0% | |
| AAGAAGCTATTGAATCAATC+TGG | - | chr3_3:16907263-16907282 | Msa0444130:CDS | 30.0% | |
| ! | GTTGAGATGATAGAGTATTA+TGG | - | chr3_3:16907421-16907440 | Msa0444130:CDS | 30.0% |
| ! | AATTGATTTACACTCACATC+TGG | + | chr3_3:16907673-16907692 | None:intergenic | 30.0% |
| GATGTGAGTGTAAATCAATT+TGG | - | chr3_3:16907673-16907692 | Msa0444130:CDS | 30.0% | |
| AAGGAAAATGACAAAGTTTC+TGG | - | chr3_3:16907796-16907815 | Msa0444130:CDS | 30.0% | |
| ! | GTTGGTAAGAAAAATGACAA+AGG | - | chr3_3:16907820-16907839 | Msa0444130:CDS | 30.0% |
| ! | AGTGTTCAAGATGTACATTT+TGG | - | chr3_3:16907910-16907929 | Msa0444130:CDS | 30.0% |
| TAAACATAGTAGTAGTTGTG+TGG | + | chr3_3:16908117-16908136 | None:intergenic | 30.0% | |
| ! | CTCTCATTTTGAATATCTTC+AGG | + | chr3_3:16908276-16908295 | None:intergenic | 30.0% |
| ATTCAAAATGAGAGTAGTAG+TGG | - | chr3_3:16908282-16908301 | Msa0444130:intron | 30.0% | |
| TGATGAAGATTGTGAAATTC+AGG | - | chr3_3:16908422-16908441 | Msa0444130:intron | 30.0% | |
| GATGAAGATTGTGAAATTCA+GGG | - | chr3_3:16908423-16908442 | Msa0444130:intron | 30.0% | |
| TTCTTTGGTTGTTTGAATGT+AGG | + | chr3_3:16908456-16908475 | None:intergenic | 30.0% | |
| ACCAAACTAGAATTTCAACA+TGG | - | chr3_3:16908516-16908535 | Msa0444130:intron | 30.0% | |
| ! | ACCATGTTGAAATTCTAGTT+TGG | + | chr3_3:16908520-16908539 | None:intergenic | 30.0% |
| TAGAATTTCAACATGGTATG+AGG | - | chr3_3:16908523-16908542 | Msa0444130:intron | 30.0% | |
| ATATGCAATTCATTCTGGTA+GGG | - | chr3_3:16908548-16908567 | Msa0444130:intron | 30.0% | |
| TTGTGAAGAATGACAAATTG+AGG | - | chr3_3:16908580-16908599 | Msa0444130:intron | 30.0% | |
| ! | TGTCTTGGATTTTCAAAGTT+GGG | + | chr3_3:16908791-16908810 | None:intergenic | 30.0% |
| ! | ATGTCTTGGATTTTCAAAGT+TGG | + | chr3_3:16908792-16908811 | None:intergenic | 30.0% |
| !! | TAGTCTTGTTGATAATGTCT+TGG | + | chr3_3:16908806-16908825 | None:intergenic | 30.0% |
| TATCAAAGTGACAAAGACAA+AGG | - | chr3_3:16908839-16908858 | Msa0444130:intron | 30.0% | |
| !! | ATGTTGTTGATGGATCTTTT+AGG | - | chr3_3:16908889-16908908 | Msa0444130:intron | 30.0% |
| !! | TGTTGTTGATGGATCTTTTA+GGG | - | chr3_3:16908890-16908909 | Msa0444130:intron | 30.0% |
| TCTTGTAAATCATCTTCAGA+AGG | + | chr3_3:16909005-16909024 | None:intergenic | 30.0% | |
| ! | ATGTAAACTCTTTGAAAGTG+AGG | + | chr3_3:16909047-16909066 | None:intergenic | 30.0% |
| AAGAGTTTACATATGCTTCA+AGG | - | chr3_3:16909055-16909074 | Msa0444130:intron | 30.0% | |
| !! | ATAGGGAGTATTTGATCATT+TGG | + | chr3_3:16909185-16909204 | None:intergenic | 30.0% |
| AGATTTACTTGTGAATGACT+TGG | - | chr3_3:16909256-16909275 | Msa0444130:intron | 30.0% | |
| GATTTACTTGTGAATGACTT+GGG | - | chr3_3:16909257-16909276 | Msa0444130:intron | 30.0% | |
| ATTCATAAGTGACCAACAAA+AGG | - | chr3_3:16909307-16909326 | Msa0444130:intron | 30.0% | |
| ! | TAATACAGCATACCTTTTGT+TGG | + | chr3_3:16909322-16909341 | None:intergenic | 30.0% |
| TGAATATATGGATGTTATCC+TGG | - | chr3_3:16909350-16909369 | Msa0444130:intron | 30.0% | |
| TGTTTGTATGTGTTATATGC+AGG | - | chr3_3:16909410-16909429 | Msa0444130:intron | 30.0% | |
| GTTTGTATGTGTTATATGCA+GGG | - | chr3_3:16909411-16909430 | Msa0444130:intron | 30.0% | |
| TCAGAATCTATATCATGGAA+AGG | - | chr3_3:16909784-16909803 | Msa0444130:intron | 30.0% | |
| AATCTATATCATGGAAAGGT+TGG | - | chr3_3:16909788-16909807 | Msa0444130:intron | 30.0% | |
| !! | TCAAGCTTTTTCTTGATGTT+GGG | + | chr3_3:16909858-16909877 | None:intergenic | 30.0% |
| !! | TTCAAGCTTTTTCTTGATGT+TGG | + | chr3_3:16909859-16909878 | None:intergenic | 30.0% |
| AGGTTGCTTATACAAACAAA+TGG | - | chr3_3:16909883-16909902 | Msa0444130:CDS | 30.0% | |
| ATACAAACAAATGGCTTACA+AGG | - | chr3_3:16909892-16909911 | Msa0444130:CDS | 30.0% | |
| ! | GGTCCTTTATCTTTCTAAAA+TGG | - | chr3_3:16909946-16909965 | Msa0444130:intron | 30.0% |
| TGTAACAAGTGCATAGTTTA+AGG | - | chr3_3:16910041-16910060 | Msa0444130:intron | 30.0% | |
| ! | TTGTGGTGAAAATCTTTTTG+AGG | - | chr3_3:16910092-16910111 | Msa0444130:CDS | 30.0% |
| !! | TATTTGCTGTATCAGGTATA+TGG | - | chr3_3:16910218-16910237 | Msa0444130:CDS | 30.0% |
| CATATGATATTCCCTGTTAA+TGG | - | chr3_3:16910306-16910325 | Msa0444130:CDS | 30.0% | |
| ATAGAGATCTACCATTAACA+GGG | + | chr3_3:16910320-16910339 | None:intergenic | 30.0% | |
| !! | TCCTTAGTTCTCTTTTTCTT+GGG | + | chr3_3:16910402-16910421 | None:intergenic | 30.0% |
| TTGAATGACAGTATTTGTAG+TGG | + | chr3_3:16910646-16910665 | None:intergenic | 30.0% | |
| GAAAATGTTTGAGTAAAAGG+TGG | + | chr3_3:16910729-16910748 | None:intergenic | 30.0% | |
| ! | TACTCAAACATTTTCTACTC+AGG | - | chr3_3:16910734-16910753 | Msa0444130:CDS | 30.0% |
| ! | TTTCTTGTTTGCTTGAGATT+TGG | + | chr3_3:16910790-16910809 | None:intergenic | 30.0% |
| !! | TGGTGCTACTTTGATATCAT+AGG | - | chr3_3:16907214-16907233 | Msa0444130:CDS | 35.0% |
| !!! | CTGGTTTTATGAACCATACA+TGG | - | chr3_3:16907282-16907301 | Msa0444130:CDS | 35.0% |
| TGGATAATGATGATTGTGCA+AGG | - | chr3_3:16907323-16907342 | Msa0444130:CDS | 35.0% | |
| ATAATGATGATTGTGCAAGG+AGG | - | chr3_3:16907326-16907345 | Msa0444130:CDS | 35.0% | |
| TAATGATGATTGTGCAAGGA+GGG | - | chr3_3:16907327-16907346 | Msa0444130:CDS | 35.0% | |
| TGGTTTAGGTGAAGACAATA+TGG | - | chr3_3:16907441-16907460 | Msa0444130:CDS | 35.0% | |
| ! | TTTGGAGTTTCATCAACAGT+GGG | + | chr3_3:16907499-16907518 | None:intergenic | 35.0% |
| ! | ATTTGGAGTTTCATCAACAG+TGG | + | chr3_3:16907500-16907519 | None:intergenic | 35.0% |
| AAACTCCAAATGACCAACAA+GGG | - | chr3_3:16907509-16907528 | Msa0444130:CDS | 35.0% | |
| ATTTCCACTTCAACAACAGT+GGG | + | chr3_3:16907589-16907608 | None:intergenic | 35.0% | |
| TATTTCCACTTCAACAACAG+TGG | + | chr3_3:16907590-16907609 | None:intergenic | 35.0% | |
| GAAGTGGAAATAGAAAAAGC+TGG | - | chr3_3:16907598-16907617 | Msa0444130:CDS | 35.0% | |
| AAAGCTGGTAAAGATGTTAG+TGG | - | chr3_3:16907613-16907632 | Msa0444130:CDS | 35.0% | |
| GTAAAGATGTTAGTGGAAGT+GGG | - | chr3_3:16907620-16907639 | Msa0444130:CDS | 35.0% | |
| ATTACTTCTTCACCAACAGA+TGG | + | chr3_3:16907646-16907665 | None:intergenic | 35.0% | |
| ! | TCTGTTGGTGAAGAAGTAAT+TGG | - | chr3_3:16907646-16907665 | Msa0444130:CDS | 35.0% |
| ! | CTGTTGGTGAAGAAGTAATT+GGG | - | chr3_3:16907647-16907666 | Msa0444130:CDS | 35.0% |
| !! | AATGACAAAGTTTCTGGTGT+TGG | - | chr3_3:16907802-16907821 | Msa0444130:CDS | 35.0% |
| !!! | ACATTTTGGTGATGAAGACA+TGG | - | chr3_3:16907924-16907943 | Msa0444130:CDS | 35.0% |
| TAAACATAGTAGTAGTGGTG+TGG | + | chr3_3:16908052-16908071 | None:intergenic | 35.0% | |
| AAATGAGAGTAGTAGTGGTA+CGG | - | chr3_3:16908287-16908306 | Msa0444130:intron | 35.0% | |
| ATGAGCTGATTATTGAGGAA+GGG | - | chr3_3:16908313-16908332 | Msa0444130:intron | 35.0% | |
| TCAGGTAGAAGATAAAGGTT+TGG | - | chr3_3:16908350-16908369 | Msa0444130:intron | 35.0% | |
| ! | AATTCTGAAGAGCTTGATAG+TGG | - | chr3_3:16908390-16908409 | Msa0444130:intron | 35.0% |
| GATGTTAGATTATAAGTGGG+AGG | - | chr3_3:16908476-16908495 | Msa0444130:intron | 35.0% | |
| TTAGATTATAAGTGGGAGGT+TGG | - | chr3_3:16908480-16908499 | Msa0444130:intron | 35.0% | |
| AGGACATATGCAATTCATTC+TGG | - | chr3_3:16908543-16908562 | Msa0444130:intron | 35.0% | |
| CATATGCAATTCATTCTGGT+AGG | - | chr3_3:16908547-16908566 | Msa0444130:intron | 35.0% | |
| TGACAAATTGAGGATGAGAT+TGG | - | chr3_3:16908590-16908609 | Msa0444130:intron | 35.0% | |
| TTGTGCCAAAATACCAAATG+AGG | - | chr3_3:16908650-16908669 | Msa0444130:intron | 35.0% | |
| ! | AGTTGCCTCATTTGGTATTT+TGG | + | chr3_3:16908658-16908677 | None:intergenic | 35.0% |
| AAATACCAAATGAGGCAACT+TGG | - | chr3_3:16908658-16908677 | Msa0444130:intron | 35.0% | |
| TTTCTGAATTCTAAGTGGCT+TGG | - | chr3_3:16908735-16908754 | Msa0444130:intron | 35.0% | |
| AAAACTTCAGCCTAATGTGA+GGG | - | chr3_3:16908761-16908780 | Msa0444130:intron | 35.0% | |
| TCAACAAGACTAATGAGAAG+TGG | - | chr3_3:16908814-16908833 | Msa0444130:intron | 35.0% | |
| GTTATCTTCACTGTAGAATG+TGG | + | chr3_3:16908966-16908985 | None:intergenic | 35.0% | |
| ATCATTTGGATCTGTTCCAA+TGG | + | chr3_3:16909171-16909190 | None:intergenic | 35.0% | |
| CAACAACAGCATAAGCAATA+GGG | + | chr3_3:16909202-16909221 | None:intergenic | 35.0% | |
| TCAACAACAGCATAAGCAAT+AGG | + | chr3_3:16909203-16909222 | None:intergenic | 35.0% | |
| ATTGCTTATGCTGTTGTTGA+CGG | - | chr3_3:16909203-16909222 | Msa0444130:intron | 35.0% | |
| TCAGTATAACACACATATCC+AGG | + | chr3_3:16909371-16909390 | None:intergenic | 35.0% | |
| AACTTCAGAAAACAATACCC+TGG | - | chr3_3:16909504-16909523 | Msa0444130:intron | 35.0% | |
| ATACCCTGGAAAGAAACTAA+AGG | - | chr3_3:16909518-16909537 | Msa0444130:intron | 35.0% | |
| ! | GTTCCTTTAGTTTCTTTCCA+GGG | + | chr3_3:16909524-16909543 | None:intergenic | 35.0% |
| ! | AGTTCCTTTAGTTTCTTTCC+AGG | + | chr3_3:16909525-16909544 | None:intergenic | 35.0% |
| AGAAACTAAAGGAACTGATG+TGG | - | chr3_3:16909529-16909548 | Msa0444130:intron | 35.0% | |
| TGCATTTGGATATGTTGTTG+TGG | + | chr3_3:16909562-16909581 | None:intergenic | 35.0% | |
| CAACAACATATCCAAATGCA+TGG | - | chr3_3:16909562-16909581 | Msa0444130:intron | 35.0% | |
| AACATATCCAAATGCATGGA+TGG | - | chr3_3:16909566-16909585 | Msa0444130:intron | 35.0% | |
| TTCAAATACCACCTAGAAGA+TGG | - | chr3_3:16909640-16909659 | Msa0444130:intron | 35.0% | |
| ATGGAGCAGATCATATTTCA+GGG | - | chr3_3:16909659-16909678 | Msa0444130:intron | 35.0% | |
| TGTACCAAAGTGTGATACAT+TGG | - | chr3_3:16909683-16909702 | Msa0444130:intron | 35.0% | |
| TTGACCAATGTATCACACTT+TGG | + | chr3_3:16909690-16909709 | None:intergenic | 35.0% | |
| TCTTTCAACTCTGTCATTGT+TGG | - | chr3_3:16909723-16909742 | Msa0444130:intron | 35.0% | |
| !!! | TGATCACTGGTTTTGATCTA+GGG | + | chr3_3:16909749-16909768 | None:intergenic | 35.0% |
| GGAGATCAGAATCTATATCA+TGG | - | chr3_3:16909779-16909798 | Msa0444130:intron | 35.0% | |
| CAAGAAAAAGCTTGAAAGAG+AGG | - | chr3_3:16909863-16909882 | Msa0444130:CDS | 35.0% | |
| TCATCTTGTATGTGTGAAAC+AGG | - | chr3_3:16910067-16910086 | Msa0444130:intron | 35.0% | |
| !!! | GTGAAAATCTTTTTGAGGTC+TGG | - | chr3_3:16910097-16910116 | Msa0444130:CDS | 35.0% |
| ACAGAAAATTGTTCCCTAGA+TGG | + | chr3_3:16910132-16910151 | None:intergenic | 35.0% | |
| !! | TACATGGTATTTGCTGTATC+AGG | - | chr3_3:16910211-16910230 | Msa0444130:CDS | 35.0% |
| CTTTCTCTCCTATATTCATC+AGG | + | chr3_3:16910267-16910286 | None:intergenic | 35.0% | |
| CTGATGAATATAGGAGAGAA+AGG | - | chr3_3:16910265-16910284 | Msa0444130:CDS | 35.0% | |
| CATAGAGATCTACCATTAAC+AGG | + | chr3_3:16910321-16910340 | None:intergenic | 35.0% | |
| CTGTTAATGGTAGATCTCTA+TGG | - | chr3_3:16910319-16910338 | Msa0444130:CDS | 35.0% | |
| !! | GTCCTTAGTTCTCTTTTTCT+TGG | + | chr3_3:16910403-16910422 | None:intergenic | 35.0% |
| ATTCACAAATGAAGAGAGCA+AGG | - | chr3_3:16910445-16910464 | Msa0444130:CDS | 35.0% | |
| !!! | GGAAGTAGTTGATTGGTTTT+GGG | + | chr3_3:16910619-16910638 | None:intergenic | 35.0% |
| !!! | TGGAAGTAGTTGATTGGTTT+TGG | + | chr3_3:16910620-16910639 | None:intergenic | 35.0% |
| AATGACAGTATTTGTAGTGG+TGG | + | chr3_3:16910643-16910662 | None:intergenic | 35.0% | |
| TCTCAAGCAAACAAGAAACA+AGG | - | chr3_3:16910792-16910811 | Msa0444130:CDS | 35.0% | |
| ! | AGTTGCAACAGAATTAGTCT+TGG | + | chr3_3:16910826-16910845 | None:intergenic | 35.0% |
| ACAGAAGTTGCCATTCAAAA+GGG | - | chr3_3:16910959-16910978 | Msa0444130:CDS | 35.0% | |
| !! | CACTATGGTGGTGATTTTGA+TGG | - | chr3_3:16907133-16907152 | Msa0444130:CDS | 40.0% |
| !! | ATTATGGTCTTGAGAGCACT+TGG | - | chr3_3:16907173-16907192 | Msa0444130:CDS | 40.0% |
| GGTTATGTGATCCAGATTAC+TGG | - | chr3_3:16907194-16907213 | Msa0444130:CDS | 40.0% | |
| TCAAAGTAGCACCAGTAATC+TGG | + | chr3_3:16907208-16907227 | None:intergenic | 40.0% | |
| ACCATACATGGCTGAAGAAA+TGG | - | chr3_3:16907294-16907313 | Msa0444130:CDS | 40.0% | |
| ACCATTTCTTCAGCCATGTA+TGG | + | chr3_3:16907298-16907317 | None:intergenic | 40.0% | |
| CAAGCTATAGCACAAACTGA+TGG | - | chr3_3:16907352-16907371 | Msa0444130:CDS | 40.0% | |
| TGAAGACAATATGGCTGATG+AGG | - | chr3_3:16907450-16907469 | Msa0444130:CDS | 40.0% | |
| GAAACTCCAAATGACCAACA+AGG | - | chr3_3:16907508-16907527 | Msa0444130:CDS | 40.0% | |
| AACTCCAAATGACCAACAAG+GGG | - | chr3_3:16907510-16907529 | Msa0444130:CDS | 40.0% | |
| TTATCCCCTTGTTGGTCATT+TGG | + | chr3_3:16907517-16907536 | None:intergenic | 40.0% | |
| ACCAACAAGGGGATAATGTA+GGG | - | chr3_3:16907521-16907540 | Msa0444130:CDS | 40.0% | |
| GGTAAAGATGTTAGTGGAAG+TGG | - | chr3_3:16907619-16907638 | Msa0444130:CDS | 40.0% | |
| AATCAATTTGGGCCAACTGT+TGG | - | chr3_3:16907685-16907704 | Msa0444130:CDS | 40.0% | |
| TGAAAATGCTACTACTGCCA+AGG | - | chr3_3:16907735-16907754 | Msa0444130:CDS | 40.0% | |
| TTAGGGGACAAGAATGTAAC+AGG | - | chr3_3:16907766-16907785 | Msa0444130:CDS | 40.0% | |
| TAGGGGACAAGAATGTAACA+GGG | - | chr3_3:16907767-16907786 | Msa0444130:CDS | 40.0% | |
| GAATGTAACAGGGTGTGATA+AGG | - | chr3_3:16907777-16907796 | Msa0444130:CDS | 40.0% | |
| TGCATGCTTAATGACTGCTT+TGG | - | chr3_3:16907949-16907968 | Msa0444130:CDS | 40.0% | |
| ! | AGGGAATGATAATGATGCTG+AGG | - | chr3_3:16908158-16908177 | Msa0444130:intron | 40.0% |
| ACCACCACCAATGAAGAAAA+GGG | - | chr3_3:16908191-16908210 | Msa0444130:intron | 40.0% | |
| GGATGATGAGCTGATTATTG+AGG | - | chr3_3:16908308-16908327 | Msa0444130:intron | 40.0% | |
| GATGAGCTGATTATTGAGGA+AGG | - | chr3_3:16908312-16908331 | Msa0444130:intron | 40.0% | |
| GCATGTCAGGTAGAAGATAA+AGG | - | chr3_3:16908345-16908364 | Msa0444130:intron | 40.0% | |
| TAAAGGTTTGGAAGATGCTG+AGG | - | chr3_3:16908362-16908381 | Msa0444130:intron | 40.0% | |
| !!! | TGGGAGGTTGGTACATATTT+TGG | - | chr3_3:16908492-16908511 | Msa0444130:intron | 40.0% |
| TCCTGACCATACATGTAGTA+GGG | - | chr3_3:16908698-16908717 | Msa0444130:intron | 40.0% | |
| TGTTACCCCTACTACATGTA+TGG | + | chr3_3:16908707-16908726 | None:intergenic | 40.0% | |
| TACATGTAGTAGGGGTAACA+AGG | - | chr3_3:16908707-16908726 | Msa0444130:intron | 40.0% | |
| CAAAACTTCAGCCTAATGTG+AGG | - | chr3_3:16908760-16908779 | Msa0444130:intron | 40.0% | |
| TTGGCTGTTGATGTTGTTGA+TGG | - | chr3_3:16908879-16908898 | Msa0444130:intron | 40.0% | |
| !! | CTTTTAGGGAGCAGTATACT+AGG | - | chr3_3:16908904-16908923 | Msa0444130:intron | 40.0% |
| TCATCTTCAGAAGGCAGATA+TGG | + | chr3_3:16908996-16909015 | None:intergenic | 40.0% | |
| TGAGGATTCAGATTAGCAGT+AGG | + | chr3_3:16909029-16909048 | None:intergenic | 40.0% | |
| CAATGATAGGTCTGCACTTT+AGG | + | chr3_3:16909097-16909116 | None:intergenic | 40.0% | |
| CTAAAGTGCAGACCTATCAT+TGG | - | chr3_3:16909095-16909114 | Msa0444130:intron | 40.0% | |
| TGCTTCCTGAAAGGTTACTA+TGG | - | chr3_3:16909128-16909147 | Msa0444130:intron | 40.0% | |
| TTCCTGAAAGGTTACTATGG+TGG | - | chr3_3:16909131-16909150 | Msa0444130:intron | 40.0% | |
| ! | GGTCAACTTTTAACAGCCAT+TGG | - | chr3_3:16909152-16909171 | Msa0444130:intron | 40.0% |
| ACGGAGAGACAAAAGAAACA+TGG | - | chr3_3:16909222-16909241 | Msa0444130:intron | 40.0% | |
| CGGAGAGACAAAAGAAACAT+GGG | - | chr3_3:16909223-16909242 | Msa0444130:intron | 40.0% | |
| AGACAAAAGAAACATGGGCT+TGG | - | chr3_3:16909228-16909247 | Msa0444130:intron | 40.0% | |
| ! | TTACTTGTGAATGACTTGGG+TGG | - | chr3_3:16909260-16909279 | Msa0444130:intron | 40.0% |
| TTGACCACAGATTCTGTGTT+AGG | - | chr3_3:16909469-16909488 | Msa0444130:intron | 40.0% | |
| AATGCCTAACACAGAATCTG+TGG | + | chr3_3:16909476-16909495 | None:intergenic | 40.0% | |
| ACTAAAGGAACTGATGTGGA+AGG | - | chr3_3:16909533-16909552 | Msa0444130:intron | 40.0% | |
| ATAGCATCCATCCATGCATT+TGG | + | chr3_3:16909576-16909595 | None:intergenic | 40.0% | |
| TATGATCTGCTCCATCTTCT+AGG | + | chr3_3:16909654-16909673 | None:intergenic | 40.0% | |
| GATGGAGCAGATCATATTTC+AGG | - | chr3_3:16909658-16909677 | Msa0444130:intron | 40.0% | |
| TGGAGCAGATCATATTTCAG+GGG | - | chr3_3:16909660-16909679 | Msa0444130:intron | 40.0% | |
| !!! | GTGATCACTGGTTTTGATCT+AGG | + | chr3_3:16909750-16909769 | None:intergenic | 40.0% |
| ! | TCTGGCACATTTTTCCATCT+AGG | - | chr3_3:16910115-16910134 | Msa0444130:CDS | 40.0% |
| ! | CTGGCACATTTTTCCATCTA+GGG | - | chr3_3:16910116-16910135 | Msa0444130:CDS | 40.0% |
| AAACAAGAGACTGCTCTTGT+AGG | - | chr3_3:16910160-16910179 | Msa0444130:CDS | 40.0% | |
| CAGCAAATACCATGTACACA+TGG | + | chr3_3:16910207-16910226 | None:intergenic | 40.0% | |
| TGGTTGTCTTCTAATAGGTG+GGG | + | chr3_3:16910373-16910392 | None:intergenic | 40.0% | |
| CTGGTTGTCTTCTAATAGGT+GGG | + | chr3_3:16910374-16910393 | None:intergenic | 40.0% | |
| CTACCTGGTTGTCTTCTAAT+AGG | + | chr3_3:16910378-16910397 | None:intergenic | 40.0% | |
| CTATTAGAAGACAACCAGGT+AGG | - | chr3_3:16910376-16910395 | Msa0444130:CDS | 40.0% | |
| GCCCAAGAAAAAGAGAACTA+AGG | - | chr3_3:16910398-16910417 | Msa0444130:CDS | 40.0% | |
| CATCTCTCAGCATTTCAGAT+GGG | + | chr3_3:16910425-16910444 | None:intergenic | 40.0% | |
| TCATCTCTCAGCATTTCAGA+TGG | + | chr3_3:16910426-16910445 | None:intergenic | 40.0% | |
| CAAATGAAGAGAGCAAGGTT+TGG | - | chr3_3:16910450-16910469 | Msa0444130:CDS | 40.0% | |
| TGTAGCAGATGTAAGTCAGT+TGG | - | chr3_3:16910480-16910499 | Msa0444130:CDS | 40.0% | |
| !! | TAGATGGATTATCAGTGGCT+TGG | + | chr3_3:16910551-16910570 | None:intergenic | 40.0% |
| !! | GGTAGTAGATGGATTATCAG+TGG | + | chr3_3:16910556-16910575 | None:intergenic | 40.0% |
| !!! | GTAGTTGATTGGTTTTGGGT+TGG | + | chr3_3:16910615-16910634 | None:intergenic | 40.0% |
| ! | GGAAGCAGTTGATTGGTTAT+GGG | + | chr3_3:16910685-16910704 | None:intergenic | 40.0% |
| ! | TGGAAGCAGTTGATTGGTTA+TGG | + | chr3_3:16910686-16910705 | None:intergenic | 40.0% |
| AAAAGGTGGTTGACTACAAG+TGG | + | chr3_3:16910715-16910734 | None:intergenic | 40.0% | |
| CAAGCAAACAAGAAACAAGG+TGG | - | chr3_3:16910795-16910814 | Msa0444130:CDS | 40.0% | |
| !! | GCTACTTTCTTGGAAGCATT+TGG | + | chr3_3:16910852-16910871 | None:intergenic | 40.0% |
| !! | AGTTGCAGTAGCTTTAGTCT+TGG | + | chr3_3:16910883-16910902 | None:intergenic | 40.0% |
| AACTTCTGTCTTGTGGTGTT+TGG | + | chr3_3:16910948-16910967 | None:intergenic | 40.0% | |
| GACAGAAGTTGCCATTCAAA+AGG | - | chr3_3:16910958-16910977 | Msa0444130:CDS | 40.0% | |
| CAGAAGTTGCCATTCAAAAG+GGG | - | chr3_3:16910960-16910979 | Msa0444130:CDS | 40.0% | |
| !! | GGCTGAAGAAATGGTGCTAT+TGG | - | chr3_3:16907303-16907322 | Msa0444130:CDS | 45.0% |
| GACAATATGGCTGATGAGGA+TGG | - | chr3_3:16907454-16907473 | Msa0444130:CDS | 45.0% | |
| GAGGATGGTCCTACTGATAA+TGG | - | chr3_3:16907469-16907488 | Msa0444130:CDS | 45.0% | |
| !! | GATGGTCCTACTGATAATGG+AGG | - | chr3_3:16907472-16907491 | Msa0444130:CDS | 45.0% |
| GACCAACAAGGGGATAATGT+AGG | - | chr3_3:16907520-16907539 | Msa0444130:CDS | 45.0% | |
| CCAACAAGGGGATAATGTAG+GGG | - | chr3_3:16907522-16907541 | Msa0444130:CDS | 45.0% | |
| CTTTCCTCTTCACCAACAGT+TGG | + | chr3_3:16907700-16907719 | None:intergenic | 45.0% | |
| ! | ACTGTTGGTGAAGAGGAAAG+TGG | - | chr3_3:16907700-16907719 | Msa0444130:CDS | 45.0% |
| ! | CTGTTGGTGAAGAGGAAAGT+GGG | - | chr3_3:16907701-16907720 | Msa0444130:CDS | 45.0% |
| AGAGGAAAGTGGGCAAGATT+TGG | - | chr3_3:16907711-16907730 | Msa0444130:CDS | 45.0% | |
| GAGGAAAGTGGGCAAGATTT+GGG | - | chr3_3:16907712-16907731 | Msa0444130:CDS | 45.0% | |
| CTACTACTGCCAAGGAAGTT+GGG | - | chr3_3:16907743-16907762 | Msa0444130:CDS | 45.0% | |
| TGACTGCTTTGGCTATGATG+AGG | - | chr3_3:16907960-16907979 | Msa0444130:CDS | 45.0% | |
| GACTGCTTTGGCTATGATGA+GGG | - | chr3_3:16907961-16907980 | Msa0444130:CDS | 45.0% | |
| GTTGACAACACTGTTACAGC+AGG | - | chr3_3:16908012-16908031 | Msa0444130:CDS | 45.0% | |
| CACCACCACCAATGAAGAAA+AGG | - | chr3_3:16908190-16908209 | Msa0444130:intron | 45.0% | |
| CCACCACCAATGAAGAAAAG+GGG | - | chr3_3:16908192-16908211 | Msa0444130:intron | 45.0% | |
| ! | CTACCCCTTTTCTTCATTGG+TGG | + | chr3_3:16908198-16908217 | None:intergenic | 45.0% |
| ! | GGTCTACCCCTTTTCTTCAT+TGG | + | chr3_3:16908201-16908220 | None:intergenic | 45.0% |
| TGAAGAAAAGGGGTAGACCA+AGG | - | chr3_3:16908202-16908221 | Msa0444130:intron | 45.0% | |
| TCAGTAGCATCTGGATGAAC+AGG | + | chr3_3:16908234-16908253 | None:intergenic | 45.0% | |
| GTTCATCCAGATGCTACTGA+TGG | - | chr3_3:16908234-16908253 | Msa0444130:CDS | 45.0% | |
| CTGATTATTGAGGAAGGGTC+TGG | - | chr3_3:16908318-16908337 | Msa0444130:intron | 45.0% | |
| AGGATGAGATTGGAGTGTAG+AGG | - | chr3_3:16908600-16908619 | Msa0444130:intron | 45.0% | |
| AGATTGGAGTGTAGAGGTAG+AGG | - | chr3_3:16908606-16908625 | Msa0444130:intron | 45.0% | |
| TAGAGGCAACTGTGAATGGA+AGG | - | chr3_3:16908623-16908642 | Msa0444130:intron | 45.0% | |
| GTCCTGACCATACATGTAGT+AGG | - | chr3_3:16908697-16908716 | Msa0444130:intron | 45.0% | |
| CCTGACCATACATGTAGTAG+GGG | - | chr3_3:16908699-16908718 | Msa0444130:intron | 45.0% | |
| !! | AGCCAATGATCTAGCTCTGA+TGG | + | chr3_3:16908865-16908884 | None:intergenic | 45.0% |
| AGAAGGCAGATATGGTGTAC+TGG | + | chr3_3:16908988-16909007 | None:intergenic | 45.0% | |
| !! | AGACCTATCATTGGCTTGGA+TGG | - | chr3_3:16909104-16909123 | Msa0444130:intron | 45.0% |
| CATCCATCCAAGCCAATGAT+AGG | + | chr3_3:16909110-16909129 | None:intergenic | 45.0% | |
| TTGGATGGATGCTTCCTGAA+AGG | - | chr3_3:16909119-16909138 | Msa0444130:intron | 45.0% | |
| GACCACCATAGTAACCTTTC+AGG | + | chr3_3:16909136-16909155 | None:intergenic | 45.0% | |
| TTGAGCAACTCATCCATTGC+TGG | + | chr3_3:16909444-16909463 | None:intergenic | 45.0% | |
| TGCATGGATGGATGCTATGA+AGG | - | chr3_3:16909578-16909597 | Msa0444130:intron | 45.0% | |
| GGATGCTATGAAGGAGATCA+AGG | - | chr3_3:16909587-16909606 | Msa0444130:intron | 45.0% | |
| GATCAAGGCAATCAATCCAG+AGG | - | chr3_3:16909602-16909621 | Msa0444130:intron | 45.0% | |
| ACCAGTGATCACTATGCTTG+AGG | - | chr3_3:16909758-16909777 | Msa0444130:intron | 45.0% | |
| TCCTCAAGCATAGTGATCAC+TGG | + | chr3_3:16909762-16909781 | None:intergenic | 45.0% | |
| ATGTTGGGCAAAACACTGTC+TGG | + | chr3_3:16909843-16909862 | None:intergenic | 45.0% | |
| ! | TATGTGTGAAACAGGCGTTG+TGG | - | chr3_3:16910075-16910094 | Msa0444130:intron | 45.0% |
| TGTAGGAAGTGGTTGTTGAC+TGG | - | chr3_3:16910177-16910196 | Msa0444130:CDS | 45.0% | |
| ! | GTAGGAAGTGGTTGTTGACT+GGG | - | chr3_3:16910178-16910197 | Msa0444130:CDS | 45.0% |
| GGTTGTCTTCTAATAGGTGG+GGG | + | chr3_3:16910372-16910391 | None:intergenic | 45.0% | |
| CCTGGTTGTCTTCTAATAGG+TGG | + | chr3_3:16910375-16910394 | None:intergenic | 45.0% | |
| CCACCTATTAGAAGACAACC+AGG | - | chr3_3:16910372-16910391 | Msa0444130:CDS | 45.0% | |
| TTGAGTGACAGTGGTGGTAT+GGG | + | chr3_3:16910583-16910602 | None:intergenic | 45.0% | |
| ATTGAGTGACAGTGGTGGTA+TGG | + | chr3_3:16910584-16910603 | None:intergenic | 45.0% | |
| !! | TGGTGGTGGAAGTAGTTGAT+TGG | + | chr3_3:16910626-16910645 | None:intergenic | 45.0% |
| GACAGTATTTGTAGTGGTGG+TGG | + | chr3_3:16910640-16910659 | None:intergenic | 45.0% | |
| ! | GCAGTTGATTGGTTATGGGT+TGG | + | chr3_3:16910681-16910700 | None:intergenic | 45.0% |
| TGGTTGACTACAAGTGGTGT+GGG | + | chr3_3:16910709-16910728 | None:intergenic | 45.0% | |
| AGCTGAAGTCTGTGCATTTG+TGG | + | chr3_3:16910763-16910782 | None:intergenic | 45.0% | |
| ! | GGAAGTAGCAGCTACTTTCT+TGG | + | chr3_3:16910862-16910881 | None:intergenic | 45.0% |
| ATGTAGCAGCAAGCTCCAAA+AGG | - | chr3_3:16910919-16910938 | Msa0444130:CDS | 45.0% | |
| TGTAGCAGCAAGCTCCAAAA+GGG | - | chr3_3:16910920-16910939 | Msa0444130:CDS | 45.0% | |
| GAATGGCAACTTCTGTCTTG+TGG | + | chr3_3:16910955-16910974 | None:intergenic | 45.0% | |
| ! | CTTGTTCGACCCCTTTTGAA+TGG | + | chr3_3:16910972-16910991 | None:intergenic | 45.0% |
| TTTGCGGTGGTCTGTCACTA+TGG | - | chr3_3:16907118-16907137 | Msa0444130:CDS | 50.0% | |
| GTGGGACCTCCATTATCAGT+AGG | + | chr3_3:16907481-16907500 | None:intergenic | 50.0% | |
| CCCCTACATTATCCCCTTGT+TGG | + | chr3_3:16907525-16907544 | None:intergenic | 50.0% | |
| ACAAGGGGATAATGTAGGGG+TGG | - | chr3_3:16907525-16907544 | Msa0444130:CDS | 50.0% | |
| CAAGGGGATAATGTAGGGGT+GGG | - | chr3_3:16907526-16907545 | Msa0444130:CDS | 50.0% | |
| AAGGGGATAATGTAGGGGTG+GGG | - | chr3_3:16907527-16907546 | Msa0444130:CDS | 50.0% | |
| GCTACTACTGCCAAGGAAGT+TGG | - | chr3_3:16907742-16907761 | Msa0444130:CDS | 50.0% | |
| ACTGCCAAGGAAGTTGGGTT+AGG | - | chr3_3:16907748-16907767 | Msa0444130:CDS | 50.0% | |
| CTGCCAAGGAAGTTGGGTTA+GGG | - | chr3_3:16907749-16907768 | Msa0444130:CDS | 50.0% | |
| ! | TGCCAAGGAAGTTGGGTTAG+GGG | - | chr3_3:16907750-16907769 | Msa0444130:CDS | 50.0% |
| AGGTAAGGAGCCTGATGTAG+AGG | - | chr3_3:16907840-16907859 | Msa0444130:CDS | 50.0% | |
| GGTAAGGAGCCTGATGTAGA+GGG | - | chr3_3:16907841-16907860 | Msa0444130:CDS | 50.0% | |
| CCATCTTCTCCCTCTACATC+AGG | + | chr3_3:16907853-16907872 | None:intergenic | 50.0% | |
| CCTGATGTAGAGGGAGAAGA+TGG | - | chr3_3:16907850-16907869 | Msa0444130:CDS | 50.0% | |
| TGCTTTGGCTATGATGAGGG+AGG | - | chr3_3:16907964-16907983 | Msa0444130:CDS | 50.0% | |
| GGCTATGATGAGGGAGGTAA+TGG | - | chr3_3:16907970-16907989 | Msa0444130:CDS | 50.0% | |
| ! | TGAGGGAGGTAATGGTGATG+AGG | - | chr3_3:16907978-16907997 | Msa0444130:CDS | 50.0% |
| ! | GAGGGAGGTAATGGTGATGA+GGG | - | chr3_3:16907979-16907998 | Msa0444130:CDS | 50.0% |
| ! | CCCCTTTTCTTCATTGGTGG+TGG | + | chr3_3:16908195-16908214 | None:intergenic | 50.0% |
| TATTGAGGAAGGGTCTGGTC+AGG | - | chr3_3:16908323-16908342 | Msa0444130:intron | 50.0% | |
| GAGGTAGAGGCAACTGTGAA+TGG | - | chr3_3:16908619-16908638 | Msa0444130:intron | 50.0% | |
| AGCTGCCAAGTTGCCTCATT+TGG | + | chr3_3:16908666-16908685 | None:intergenic | 50.0% | |
| CCCCTACTACATGTATGGTC+AGG | + | chr3_3:16908702-16908721 | None:intergenic | 50.0% | |
| GTTGGGTTCTCCCTCACATT+AGG | + | chr3_3:16908774-16908793 | None:intergenic | 50.0% | |
| GGCCATCAGAGCTAGATCAT+TGG | - | chr3_3:16908860-16908879 | Msa0444130:intron | 50.0% | |
| ! | GTGCAGACCTATCATTGGCT+TGG | - | chr3_3:16909100-16909119 | Msa0444130:intron | 50.0% |
| ! | TGTGAATGACTTGGGTGGTG+TGG | - | chr3_3:16909265-16909284 | Msa0444130:intron | 50.0% |
| AGAAGACGCTTGAATGCCTC+TGG | + | chr3_3:16909621-16909640 | None:intergenic | 50.0% | |
| GATCTGCTCCATCTTCTAGG+TGG | + | chr3_3:16909651-16909670 | None:intergenic | 50.0% | |
| GAGACTGCTCTTGTAGGAAG+TGG | - | chr3_3:16910166-16910185 | Msa0444130:CDS | 50.0% | |
| ACTGGGCTACCATGTGTACA+TGG | - | chr3_3:16910195-16910214 | Msa0444130:CDS | 50.0% | |
| TTCTAATAGGTGGGGGTTGC+AGG | + | chr3_3:16910365-16910384 | None:intergenic | 50.0% | |
| ! | CTCTTTTTCTTGGGCCTACC+TGG | + | chr3_3:16910393-16910412 | None:intergenic | 50.0% |
| !!! | TCAGTGGCTTGGTTTTCAGC+AGG | + | chr3_3:16910540-16910559 | None:intergenic | 50.0% |
| ! | GTATGGGTGGTGGTAGTAGA+TGG | + | chr3_3:16910567-16910586 | None:intergenic | 50.0% |
| AGGTGATTGAGTGACAGTGG+TGG | + | chr3_3:16910589-16910608 | None:intergenic | 50.0% | |
| TGCAGGTGATTGAGTGACAG+TGG | + | chr3_3:16910592-16910611 | None:intergenic | 50.0% | |
| !!! | GATTGGTTTTGGGTTGGTGC+AGG | + | chr3_3:16910609-16910628 | None:intergenic | 50.0% |
| !! | GATTGGTTATGGGTTGGTGC+AGG | + | chr3_3:16910675-16910694 | None:intergenic | 50.0% |
| TGTGGGTGGAAGCAGTTGAT+TGG | + | chr3_3:16910692-16910711 | None:intergenic | 50.0% | |
| TTGACTACAAGTGGTGTGGG+TGG | + | chr3_3:16910706-16910725 | None:intergenic | 50.0% | |
| GTGGTTGACTACAAGTGGTG+TGG | + | chr3_3:16910710-16910729 | None:intergenic | 50.0% | |
| GTAGCAGCAAGCTCCAAAAG+GGG | - | chr3_3:16910921-16910940 | Msa0444130:CDS | 50.0% | |
| ! | TGTGGTGTTTGGACCCCTTT+TGG | + | chr3_3:16910937-16910956 | None:intergenic | 50.0% |
| TGGGCCCACTGTTGTTGAAG+TGG | - | chr3_3:16907582-16907601 | Msa0444130:CDS | 55.0% | |
| AGTGGAAGTGGGCCATCTGT+TGG | - | chr3_3:16907631-16907650 | Msa0444130:CDS | 55.0% | |
| ! | TGGGCCAACTGTTGGTGAAG+AGG | - | chr3_3:16907693-16907712 | Msa0444130:CDS | 55.0% |
| GTCCCCTAACCCAACTTCCT+TGG | + | chr3_3:16907755-16907774 | None:intergenic | 55.0% | |
| ! | GGAGGTAATGGTGATGAGGG+AGG | - | chr3_3:16907982-16908001 | Msa0444130:CDS | 55.0% |
| GGATGAACAGGCTGCTTCCT+TGG | + | chr3_3:16908222-16908241 | None:intergenic | 55.0% | |
| GCTGCTCCATCAGTAGCATC+TGG | + | chr3_3:16908243-16908262 | None:intergenic | 55.0% | |
| ATGAGGCAACTTGGCAGCTG+AGG | - | chr3_3:16908667-16908686 | Msa0444130:intron | 55.0% | |
| ACTTGGCAGCTGAGGCAAGT+TGG | - | chr3_3:16908675-16908694 | Msa0444130:intron | 55.0% | |
| !! | TGGTTTTCAGCAGGTGGTGG+AGG | + | chr3_3:16910531-16910550 | None:intergenic | 55.0% |
| !! | GCTTGGTTTTCAGCAGGTGG+TGG | + | chr3_3:16910534-16910553 | None:intergenic | 55.0% |
| !!! | GTGGCTTGGTTTTCAGCAGG+TGG | + | chr3_3:16910537-16910556 | None:intergenic | 55.0% |
| AGTGACAGTGGTGGTATGGG+TGG | + | chr3_3:16910580-16910599 | None:intergenic | 55.0% | |
| !! | TGGTTATGGGTTGGTGCAGG+TGG | + | chr3_3:16910672-16910691 | None:intergenic | 55.0% |
| GCGGTGGTCTGTCACTATGG+TGG | - | chr3_3:16907121-16907140 | Msa0444130:CDS | 60.0% | |
| AGGGTCTGGTCAGGCATGTC+AGG | - | chr3_3:16908332-16908351 | Msa0444130:intron | 60.0% | |
| GCAGGGACTGTTGCCAGCAA+TGG | - | chr3_3:16909428-16909447 | Msa0444130:intron | 60.0% | |
| GACAGTGGTGGTATGGGTGG+TGG | + | chr3_3:16910577-16910596 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_3 | gene | 16907106 | 16911016 | 16907106 | ID=Msa0444130;Name=Msa0444130 |
| chr3_3 | mRNA | 16907106 | 16911016 | 16907106 | ID=Msa0444130-mRNA-1;Parent=Msa0444130;Name=Msa0444130-mRNA-1;_AED=0.24;_eAED=0.25;_QI=0|0|0|0.75|1|1|4|0|670 |
| chr3_3 | exon | 16910089 | 16911016 | 16910089 | ID=Msa0444130-mRNA-1:exon:3530;Parent=Msa0444130-mRNA-1 |
| chr3_3 | exon | 16909853 | 16909962 | 16909853 | ID=Msa0444130-mRNA-1:exon:3529;Parent=Msa0444130-mRNA-1 |
| chr3_3 | exon | 16908209 | 16908255 | 16908209 | ID=Msa0444130-mRNA-1:exon:3528;Parent=Msa0444130-mRNA-1 |
| chr3_3 | exon | 16907106 | 16908033 | 16907106 | ID=Msa0444130-mRNA-1:exon:3527;Parent=Msa0444130-mRNA-1 |
| chr3_3 | CDS | 16910089 | 16911016 | 16910089 | ID=Msa0444130-mRNA-1:cds;Parent=Msa0444130-mRNA-1 |
| chr3_3 | CDS | 16909853 | 16909962 | 16909853 | ID=Msa0444130-mRNA-1:cds;Parent=Msa0444130-mRNA-1 |
| chr3_3 | CDS | 16908209 | 16908255 | 16908209 | ID=Msa0444130-mRNA-1:cds;Parent=Msa0444130-mRNA-1 |
| chr3_3 | CDS | 16907106 | 16908033 | 16907106 | ID=Msa0444130-mRNA-1:cds;Parent=Msa0444130-mRNA-1 |
| Gene Sequence |
| Protein sequence |
