AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0951770

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0951770 MtrunA17_Chr6g0468531 88.017 484 18 2 1 444 1 484 0.0 830
Msa0951770 MtrunA17_Chr6g0468521 76.240 484 74 2 1 444 1 483 0.0 735
Msa0951770 MtrunA17_Chr6g0468511 72.385 478 91 2 1 438 1 477 0.0 666
Msa0951770 MtrunA17_Chr1g0202761 45.940 468 213 1 15 442 27 494 2.41e-148 431
Msa0951770 MtrunA17_Chr7g0248051 45.633 458 209 1 11 428 50 507 1.75e-130 386
Msa0951770 MtrunA17_Chr5g0412771 40.315 444 224 2 32 434 57 500 1.20e-113 343
Msa0951770 MtrunA17_Chr8g0368001 36.017 472 260 3 10 439 28 499 3.10e-108 329
Msa0951770 MtrunA17_Chr7g0254521 37.639 449 239 2 29 436 29 477 1.38e-107 327
Msa0951770 MtrunA17_Chr5g0412541 37.527 461 246 3 23 441 28 488 4.10e-106 323
Msa0951770 MtrunA17_Chr3g0132531 38.622 479 247 5 7 443 27 500 5.92e-104 318
Msa0951770 MtrunA17_Chr7g0254511 35.853 463 255 2 20 442 19 479 4.40e-102 312
Msa0951770 MtrunA17_Chr1g0154441 40.103 389 192 2 90 437 1 389 5.96e-100 304
Msa0951770 MtrunA17_Chr7g0254531 38.131 396 204 2 90 444 1 396 8.31e-97 296
Msa0951770 MtrunA17_Chr4g0024501 34.012 491 268 4 4 438 23 513 1.44e-94 294
Msa0951770 MtrunA17_Chr2g0322671 35.320 453 251 2 30 440 51 503 2.04e-93 291
Msa0951770 MtrunA17_Chr2g0288281 36.761 389 204 2 90 436 1 389 1.76e-86 269
Msa0951770 MtrunA17_Chr6g0460541 37.879 396 204 2 89 442 4 399 3.57e-85 266
Msa0951770 MtrunA17_Chr5g0412571 37.313 402 210 4 79 438 29 430 2.60e-84 265
Msa0951770 MtrunA17_Chr3g0132541 35.840 399 232 3 32 425 42 421 1.08e-81 258
Msa0951770 MtrunA17_Chr5g0442331 34.813 428 237 3 59 444 74 501 6.81e-79 253
Msa0951770 MtrunA17_Chr6g0483361 30.105 475 280 4 1 431 3 469 7.90e-67 221
Msa0951770 MtrunA17_Chr6g0483381 29.560 477 282 8 1 431 3 471 4.82e-63 211
Msa0951770 MtrunA17_Chr6g0477961 31.175 417 243 3 59 431 55 471 4.72e-62 208
Msa0951770 MtrunA17_Chr1g0208791 29.424 469 284 4 1 423 10 477 8.77e-61 206
Msa0951770 MtrunA17_Chr8g0392601 28.477 453 274 3 22 432 11 455 9.50e-61 205
Msa0951770 MtrunA17_Chr7g0254501 34.551 301 157 1 175 435 2 302 4.59e-60 198
Msa0951770 MtrunA17_Chr7g0251331 29.221 462 283 4 24 443 19 478 5.40e-60 203
Msa0951770 MtrunA17_Chr6g0483351 32.632 380 212 3 90 425 1 380 1.56e-59 201
Msa0951770 MtrunA17_Chr2g0317131 32.553 470 264 9 2 422 11 476 2.03e-59 202
Msa0951770 MtrunA17_Chr2g0317151 31.489 470 259 8 2 422 11 466 8.54e-56 192
Msa0951770 MtrunA17_Chr1g0208821 30.689 479 279 7 1 432 8 480 1.12e-55 192
Msa0951770 MtrunA17_Chr6g0483331 28.855 454 268 6 23 431 12 455 1.72e-55 191
Msa0951770 MtrunA17_Chr6g0483161 33.333 360 217 3 89 425 2 361 2.66e-53 182
Msa0951770 MtrunA17_Chr2g0317171 29.936 471 280 5 1 422 1 470 2.79e-53 186
Msa0951770 MtrunA17_Chr6g0483341 28.540 452 272 5 23 431 41 484 7.86e-53 184
Msa0951770 MtrunA17_Chr1g0208881 29.596 446 272 3 28 431 22 467 3.44e-52 182
Msa0951770 MtrunA17_Chr6g0449061 27.292 469 295 6 20 444 19 485 1.05e-51 181
Msa0951770 MtrunA17_Chr2g0317221 32.891 377 209 4 89 422 9 384 1.26e-50 176
Msa0951770 MtrunA17_Chr1g0208891 29.032 465 284 4 13 431 2 466 1.02e-49 176
Msa0951770 MtrunA17_Chr2g0317161 30.282 426 253 4 40 422 40 464 2.84e-49 175
Msa0951770 MtrunA17_Chr7g0251321 31.522 368 223 5 90 431 1 365 9.66e-48 168
Msa0951770 MtrunA17_Chr6g0460531 36.576 257 159 2 14 266 4 260 3.92e-47 163
Msa0951770 MtrunA17_Chr5g0440661 32.110 327 197 6 90 414 1 304 7.40e-46 161
Msa0951770 MtrunA17_Chr5g0397991 26.964 471 290 8 1 426 41 502 3.03e-43 159
Msa0951770 MtrunA17_Chr8g0364761 34.286 245 158 2 59 300 81 325 1.90e-39 144
Msa0951770 MtrunA17_Chr6g0473701 26.398 447 283 5 38 442 135 577 8.95e-37 142
Msa0951770 MtrunA17_Chr1g0203791 25.541 462 300 4 4 423 39 498 2.81e-35 137
Msa0951770 MtrunA17_Chr6g0460521 33.796 216 103 2 265 440 1 216 2.17e-34 128
Msa0951770 MtrunA17_Chr5g0428251 24.122 427 279 4 59 443 83 506 1.99e-33 132
Msa0951770 MtrunA17_Chr3g0140931 24.429 438 287 5 38 432 58 494 7.86e-33 130
Msa0951770 MtrunA17_Chr6g0467321 24.270 445 283 7 32 423 42 485 1.01e-32 129
Msa0951770 MtrunA17_Chr8g0364751 46.552 116 62 0 316 431 60 175 2.17e-25 102
Msa0951770 MtrunA17_Chr8g0389801 22.650 468 310 5 1 426 1 458 5.67e-25 107
Msa0951770 MtrunA17_Chr4g0013031 23.045 486 319 9 5 444 44 520 6.14e-25 107
Msa0951770 MtrunA17_Chr6g0483241 38.889 180 108 1 89 266 2 181 3.24e-23 96.3
Msa0951770 MtrunA17_Chr5g0442311 33.520 179 117 1 90 266 1 179 8.46e-22 92.4
Msa0951770 MtrunA17_Chr6g0483264 26.961 204 109 2 268 431 1 204 8.47e-19 85.1
Msa0951770 MtrunA17_Chr2g0295631 20.190 421 276 4 62 423 51 470 3.09e-18 87.0
Msa0951770 MtrunA17_Chr7g0254491 37.168 113 65 1 5 117 10 116 2.47e-15 72.0
Msa0951770 MtrunA17_Chr6g0483221 28.777 139 89 1 296 424 17 155 6.36e-15 72.8
Msa0951770 MtrunA17_Chr6g0483261 30.275 109 76 0 323 431 54 162 2.66e-13 68.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0951770 AT4G00350.1 46.444 478 215 2 1 437 56 533 1.78e-156 454
Msa0951770 AT4G25640.1 47.826 483 211 2 3 444 5 487 1.41e-145 424
Msa0951770 AT4G25640.2 47.826 483 211 2 3 444 5 487 3.31e-145 424
Msa0951770 AT4G25640.3 48.028 431 184 1 3 393 5 435 3.50e-130 384
Msa0951770 AT1G47530.1 39.955 448 228 2 31 437 34 481 1.83e-121 362
Msa0951770 AT1G23300.1 37.975 474 253 2 12 444 24 497 1.51e-112 341
Msa0951770 AT1G12950.1 35.983 478 264 3 9 444 43 520 8.87e-109 331
Msa0951770 AT5G38030.1 36.157 484 263 4 2 441 17 498 1.69e-108 330
Msa0951770 AT1G47530.2 41.902 389 185 2 90 437 1 389 1.93e-108 326
Msa0951770 AT3G26590.1 37.339 466 251 2 10 434 23 488 1.47e-107 327
Msa0951770 AT5G44050.1 36.875 480 255 6 4 441 18 491 7.32e-101 310
Msa0951770 AT1G61890.1 34.459 444 249 2 37 438 52 495 4.32e-99 306
Msa0951770 AT1G11670.1 33.402 488 274 4 1 438 12 498 1.46e-98 304
Msa0951770 AT4G21910.2 36.748 449 239 4 37 441 62 509 1.80e-96 299
Msa0951770 AT4G21910.4 36.748 449 239 4 37 441 62 509 1.80e-96 299
Msa0951770 AT4G21910.3 36.526 449 240 4 37 441 60 507 2.79e-96 298
Msa0951770 AT4G21910.1 36.526 449 240 4 37 441 60 507 2.79e-96 298
Msa0951770 AT5G65380.1 37.238 478 252 6 2 437 13 484 4.23e-96 297
Msa0951770 AT1G61890.2 34.884 430 238 2 37 424 52 481 8.74e-95 294
Msa0951770 AT1G33080.1 35.837 466 251 3 25 442 29 494 7.52e-94 292
Msa0951770 AT3G26590.2 38.601 386 196 2 90 434 1 386 9.29e-94 288
Msa0951770 AT3G21690.1 34.505 455 254 3 32 444 52 504 2.33e-93 291
Msa0951770 AT4G21903.1 37.037 432 228 4 53 441 74 504 1.93e-91 286
Msa0951770 AT1G33110.1 36.000 475 260 4 1 434 8 479 2.13e-91 286
Msa0951770 AT1G33080.2 36.735 441 238 2 25 424 29 469 3.06e-91 285
Msa0951770 AT1G33100.1 34.607 471 261 3 5 434 12 476 8.67e-89 279
Msa0951770 AT1G33090.1 33.836 464 260 3 12 434 22 479 4.50e-87 275
Msa0951770 AT3G59030.1 35.142 424 233 3 59 440 78 501 1.25e-86 274
Msa0951770 AT4G21903.2 37.198 414 217 3 53 424 74 486 2.59e-86 273
Msa0951770 AT3G03620.2 33.954 483 263 7 8 444 21 493 3.64e-86 272
Msa0951770 AT3G03620.1 33.954 483 263 7 8 444 21 493 3.64e-86 272
Msa0951770 AT4G21903.3 37.215 395 205 3 90 441 1 395 4.08e-84 264
Msa0951770 AT1G61890.3 34.750 400 219 2 37 394 52 451 3.59e-83 264
Msa0951770 AT5G10420.1 36.819 459 248 5 25 441 31 489 1.69e-81 260
Msa0951770 AT5G17700.2 33.054 478 274 4 1 437 8 480 4.14e-80 256
Msa0951770 AT5G17700.1 33.054 478 274 4 1 437 8 480 4.14e-80 256
Msa0951770 AT2G04070.1 30.290 449 269 4 32 438 27 473 4.24e-64 214
Msa0951770 AT1G33110.2 33.835 399 220 4 1 358 8 403 2.07e-63 210
Msa0951770 AT2G04040.1 29.325 474 285 4 13 438 2 473 2.96e-62 209
Msa0951770 AT2G04080.1 28.953 449 275 3 32 438 27 473 1.37e-61 207
Msa0951770 AT5G52450.1 32.143 420 243 2 59 436 53 472 3.58e-60 204
Msa0951770 AT1G66760.2 27.789 493 289 7 1 441 5 482 3.32e-59 201
Msa0951770 AT2G04080.2 28.670 436 269 2 32 425 27 462 4.67e-59 201
Msa0951770 AT1G73700.1 30.498 482 279 6 4 443 8 475 1.75e-58 199
Msa0951770 AT2G04050.1 29.314 481 292 5 1 439 1 475 4.12e-58 198
Msa0951770 AT1G66760.1 28.512 477 277 6 1 428 5 466 8.75e-58 197
Msa0951770 AT1G71140.1 28.903 474 275 6 11 431 3 467 9.01e-58 197
Msa0951770 AT1G15150.1 28.998 469 281 6 20 442 21 483 6.30e-57 195
Msa0951770 AT2G34360.1 30.244 410 250 5 59 432 54 463 1.22e-54 189
Msa0951770 AT1G15170.1 29.512 471 284 3 11 433 7 477 1.92e-54 189
Msa0951770 AT2G04090.1 28.361 476 291 4 1 431 1 471 5.51e-54 187
Msa0951770 AT2G34360.2 31.398 379 244 4 59 432 54 421 8.84e-54 186
Msa0951770 AT1G15160.1 27.991 468 287 5 20 442 21 483 9.24e-54 187
Msa0951770 AT2G04100.1 27.235 481 302 4 1 437 1 477 4.31e-53 185
Msa0951770 AT3G23560.1 28.694 467 285 6 2 422 7 471 6.34e-53 184
Msa0951770 AT3G59030.2 30.678 339 193 3 59 355 78 416 3.53e-52 181
Msa0951770 AT2G04100.2 27.719 469 291 4 1 425 1 465 7.92e-52 181
Msa0951770 AT3G23550.1 28.541 466 282 6 11 427 5 468 9.36e-52 181
Msa0951770 AT1G66780.1 26.327 471 302 4 5 431 7 476 1.60e-51 181
Msa0951770 AT5G17700.3 30.303 396 230 4 1 355 8 398 8.34e-51 177
Msa0951770 AT1G15180.1 28.632 475 289 5 8 433 5 478 6.79e-49 174
Msa0951770 AT1G64820.1 25.714 455 294 4 20 431 17 470 2.35e-48 173
Msa0951770 AT1G15170.2 30.769 338 192 2 138 433 21 358 2.74e-44 159
Msa0951770 AT1G15150.2 29.070 344 202 2 141 442 24 367 9.46e-44 157
Msa0951770 AT1G66760.3 28.698 338 199 2 133 428 1 338 4.86e-39 144
Msa0951770 AT3G23560.2 29.503 322 219 4 2 317 7 326 3.80e-34 132
Msa0951770 AT1G66760.4 29.630 324 204 5 1 315 5 313 2.97e-33 129
Msa0951770 AT2G38510.1 22.616 451 300 5 38 442 12 459 8.36e-33 130
Msa0951770 AT4G29140.1 22.976 457 305 5 31 444 55 507 5.27e-32 128
Msa0951770 AT5G19700.1 24.485 437 288 4 29 423 33 469 1.24e-31 127
Msa0951770 AT1G58340.1 22.889 450 297 4 19 426 53 494 5.32e-27 114
Msa0951770 AT5G52050.1 23.026 456 303 4 19 426 22 477 3.34e-26 111
Msa0951770 AT1G71870.1 21.385 491 302 10 1 423 1 475 8.34e-25 107
Msa0951770 AT4G23030.1 24.533 428 277 6 59 442 59 484 2.74e-24 105
Msa0951770 AT4G22790.1 25.325 462 267 14 38 438 32 476 2.20e-21 97.1
Msa0951770 AT2G04066.1 33.613 119 77 1 320 438 52 168 3.31e-21 90.9
Msa0951770 AT5G49130.1 21.806 454 289 9 31 423 25 473 1.65e-19 91.3
Msa0951770 AT1G15180.2 25.912 274 159 4 125 355 8 280 3.47e-19 89.7

Find 132 sgRNAs with CRISPR-Local

Find 271 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGTACCATCGTTAAACTTTA+TGG 0.112040 6_3:-43995750 None:intergenic
GATTTGAAATTCTCAGTTTC+TGG 0.147984 6_3:+43995398 Msa0951770:exon
TACTATCTATTTCTCTATTT+TGG 0.156773 6_3:+43991357 Msa0951770:CDS
GATTGTCTTGGATGGCATTT+AGG 0.156838 6_3:+43992628 Msa0951770:CDS
CGGCAATATTCTTCAGATTT+TGG 0.172137 6_3:+43994938 Msa0951770:CDS
TTCATTAGTTATAGAGAAAA+TGG 0.172587 6_3:+43995570 Msa0951770:three_prime_UTR
TATGGTTGGTTACATAAATT+TGG 0.175731 6_3:+43994108 Msa0951770:CDS
CTTGGTTTCAACCAGCATTT+AGG 0.184697 6_3:+43994169 Msa0951770:CDS
GGATGGCATTTAGGGAATTA+TGG 0.195593 6_3:+43992637 Msa0951770:CDS
GAATTTCATCTGAAACTTAT+AGG 0.233106 6_3:+43995493 Msa0951770:three_prime_UTR
CATCTGAAACTTATAGGAAT+TGG 0.240227 6_3:+43995499 Msa0951770:three_prime_UTR
ACTCTAATCTTAAAACTTCT+TGG 0.251742 6_3:+43992306 Msa0951770:CDS
CGGCTAATCGCATGAGAATT+TGG 0.262057 6_3:+43995349 Msa0951770:CDS
ATAAGAAAGTGGAGTCTTAT+TGG 0.266792 6_3:+43991064 Msa0951770:five_prime_UTR
ATTTATATAGGTGTGGTAAT+TGG 0.266990 6_3:+43994070 Msa0951770:intron
ATCAAACATAATTACCTCTT+TGG 0.279611 6_3:-43994994 None:intergenic
TAATATCCACCACGTGGTTT+TGG 0.299655 6_3:+43991006 None:intergenic
AAGTTTCAGATGAAATTCTT+AGG 0.303228 6_3:-43995488 None:intergenic
GCTTGCATTATCCTTCTTGC+TGG 0.308510 6_3:+43992720 Msa0951770:CDS
TCCATCTATGCTGGTCATAT+TGG 0.310648 6_3:+43991289 Msa0951770:CDS
TGGAACATGATGCTGCTTCT+TGG 0.318875 6_3:+43993110 Msa0951770:CDS
CTTCATCAGTGTATTTGATT+GGG 0.322121 6_3:+43992506 Msa0951770:CDS
GATGGCATTTAGGGAATTAT+GGG 0.335429 6_3:+43992638 Msa0951770:CDS
TCTTCATCAGTGTATTTGAT+TGG 0.340775 6_3:+43992505 Msa0951770:CDS
AGTATTTCACAAACTATATC+AGG 0.341370 6_3:+43993915 Msa0951770:CDS
GCATTACAATGGGGTGCAAT+TGG 0.341543 6_3:+43995806 Msa0951770:three_prime_UTR
CTTTACCAATAGTGATGATA+TGG 0.342078 6_3:+43993839 Msa0951770:CDS
TGTTCCAACCCTGAATATTA+AGG 0.345929 6_3:-43993094 None:intergenic
ACCAATATGACCAGCATAGA+TGG 0.347961 6_3:-43991290 None:intergenic
ATTGTCTTGGATGGCATTTA+GGG 0.356470 6_3:+43992629 Msa0951770:CDS
AGAGTTGCATATAGATGAAT+TGG 0.356907 6_3:-43992288 None:intergenic
AGTGAATTAGCATACCTTCT+TGG 0.357398 6_3:+43993873 Msa0951770:CDS
ATCTGAAACTTATAGGAATT+GGG 0.360635 6_3:+43995500 Msa0951770:three_prime_UTR
ACACTATGTGGCCAAGCTTA+TGG 0.367252 6_3:+43992186 Msa0951770:CDS
GAATTTACTAAGCTAAGTTT+TGG 0.370077 6_3:+43992660 Msa0951770:CDS
TTGGTTTCAACCAGCATTTA+GGG 0.380303 6_3:+43994170 Msa0951770:CDS
AAAGTAGAATCTCACTCATA+TGG 0.385219 6_3:+43991099 Msa0951770:exon
TTGGCATGCTATTACATTGT+TGG 0.389393 6_3:+43994127 Msa0951770:CDS
GAATTGGGTGATTAGAAGTA+GGG 0.411142 6_3:+43995515 Msa0951770:three_prime_UTR
TTATGCATCCGAGATCAAAC+TGG 0.413945 6_3:-43995778 None:intergenic
CATAAAGTAGGCATTACAAT+GGG 0.417454 6_3:+43995796 Msa0951770:three_prime_UTR
AAAGAGATAGCCGATCTTGC+CGG 0.440212 6_3:+43992336 Msa0951770:CDS
TCATTATTTATAAGACCAAC+TGG 0.443175 6_3:+43994970 Msa0951770:CDS
GTATTTGATTGGGGAATGAT+TGG 0.446046 6_3:+43992516 Msa0951770:CDS
GGAATTGGGTGATTAGAAGT+AGG 0.453215 6_3:+43995514 Msa0951770:three_prime_UTR
CATTACAATGGGGTGCAATT+GGG 0.457665 6_3:+43995807 Msa0951770:three_prime_UTR
ATGTACCATATCATCACTAT+TGG 0.457968 6_3:-43993844 None:intergenic
ACGAAATTCTAGCCCGTGCT+TGG 0.457987 6_3:-43995634 None:intergenic
GATAATCCTGTCATTGCTGT+TGG 0.465528 6_3:+43992750 Msa0951770:CDS
GCAGGAAAATTTCAAAATGC+TGG 0.468904 6_3:+43992210 Msa0951770:CDS
GTATTTATCTTCAAAGGTCA+TGG 0.471386 6_3:+43992232 Msa0951770:CDS
ATCACTATTGGTAAAGATGA+AGG 0.476018 6_3:-43993832 None:intergenic
TACATTGTTGGACTCCCCAT+TGG 0.477043 6_3:+43994139 Msa0951770:CDS
TTCTAGCCCGTGCTTGGCAC+GGG 0.482163 6_3:-43995628 None:intergenic
TTATTCTTACCAAATTGAAA+AGG 0.488312 6_3:-43992775 None:intergenic
ATGCTGGTATTTATCTTCAA+AGG 0.493117 6_3:+43992226 Msa0951770:CDS
TTGGAATAAGTTCAGCAGTA+AGG 0.499155 6_3:+43993129 Msa0951770:CDS
TGGAGTCTTATTGGTATATG+TGG 0.499182 6_3:+43991073 Msa0951770:five_prime_UTR
TGGATGTGGATGGCAAGTTA+TGG 0.499825 6_3:+43994090 Msa0951770:CDS
TAGTGACCCGTGCCAAGCAC+GGG 0.502503 6_3:+43995622 Msa0951770:three_prime_UTR
ATTCTAGCCCGTGCTTGGCA+CGG 0.506048 6_3:-43995629 None:intergenic
CAACCAGCATTTAGGGGTCA+AGG 0.506365 6_3:+43994177 Msa0951770:CDS
TAATGATTTGTTTAGAACAA+TGG 0.510219 6_3:+43992691 Msa0951770:CDS
AAACCAAGGAAAATTCCAAT+GGG 0.511526 6_3:-43994154 None:intergenic
TTAGAGTCACATTAGAGCTA+TGG 0.514239 6_3:+43995463 Msa0951770:three_prime_UTR
ACCATAGCCCAGTTTGATCT+CGG 0.519479 6_3:+43995770 Msa0951770:three_prime_UTR
AATTACCTCTTTGGTCCAGT+TGG 0.521889 6_3:-43994985 None:intergenic
AAGGATGGAATGGATTGTCT+TGG 0.523770 6_3:+43992616 Msa0951770:CDS
TCCGAGATCAAACTGGGCTA+TGG 0.524992 6_3:-43995771 None:intergenic
TGTTATTATGTACATAGCAA+TGG 0.525747 6_3:+43992449 Msa0951770:CDS
TGTGGCCAAGCTTATGGTGC+AGG 0.527728 6_3:+43992192 Msa0951770:CDS
GCAATGGCAAGTAATATCTC+AGG 0.528753 6_3:+43992543 Msa0951770:CDS
CATGTAGGGAATTAGTAGAA+TGG 0.533759 6_3:-43992367 None:intergenic
ATGATTGCAGGTAGAGCAAA+CGG 0.534109 6_3:+43995329 Msa0951770:intron
TTCATCAGTGTATTTGATTG+GGG 0.536727 6_3:+43992507 Msa0951770:CDS
TCTTCAAATTCCATCTATGC+TGG 0.537679 6_3:+43991280 Msa0951770:CDS
TAACCATTGTTATACCAAGA+AGG 0.539016 6_3:-43993887 None:intergenic
CTTCACGAGAGGCAAATTGA+CGG 0.542556 6_3:-43992400 None:intergenic
ATAGGTGTGGTAATTGGATG+TGG 0.550106 6_3:+43994076 Msa0951770:intron
GTGCACATGCATAGTCACTT+TGG 0.550525 6_3:+43995430 Msa0951770:three_prime_UTR
TTGGCTTAGGGTCTATGGGG+AGG 0.550606 6_3:+43994906 Msa0951770:intron
GTAGTGACCCGTGCCAAGCA+CGG 0.555375 6_3:+43995621 Msa0951770:three_prime_UTR
GGGAATGATTGGTTTAGCAA+TGG 0.557339 6_3:+43992527 Msa0951770:CDS
AACTTAGTACTATAAGAAAG+TGG 0.558294 6_3:+43991053 Msa0951770:five_prime_UTR
GCCATTGGTTGGTGTAAAGA+AGG 0.560351 6_3:+43992597 Msa0951770:CDS
TAATGAAGAATTAAGACTGA+GGG 0.560531 6_3:-43995554 None:intergenic
TTAGCCTTAATATTCAGGGT+TGG 0.565916 6_3:+43993090 Msa0951770:intron
AAGGAACCAACAGCAATGAC+AGG 0.568244 6_3:-43992756 None:intergenic
GAAACCAAGGAAAATTCCAA+TGG 0.569581 6_3:-43994155 None:intergenic
AAAAGTAGAGACAAAGCCAC+TGG 0.570960 6_3:-43991241 None:intergenic
TGGTGTAAAGAAGGATGGAA+TGG 0.573821 6_3:+43992606 Msa0951770:CDS
CTAAATGCTGGTTGAAACCA+AGG 0.575956 6_3:-43994168 None:intergenic
TTGGTTGGTGTAAAGAAGGA+TGG 0.577321 6_3:+43992601 Msa0951770:CDS
TGATCTCGGATGCATAAAGT+AGG 0.577389 6_3:+43995784 Msa0951770:three_prime_UTR
GCATTGGTAATATATGCCAT+TGG 0.580938 6_3:+43992582 Msa0951770:CDS
ATACCTTGACCCCTAAATGC+TGG 0.585343 6_3:-43994180 None:intergenic
TGTGGATGGCAAGTTATGGT+TGG 0.586186 6_3:+43994094 Msa0951770:CDS
GACGGCGAAGGAAAACATGT+AGG 0.589287 6_3:-43992382 None:intergenic
TGGAATTTGAAGAGCCAATG+AGG 0.590690 6_3:-43991270 None:intergenic
ACGGCGAAGGAAAACATGTA+GGG 0.600604 6_3:-43992381 None:intergenic
TATCAAGATGACCAGCAAGA+AGG 0.603608 6_3:-43992731 None:intergenic
CATATAGATGAATTGGCAAG+AGG 0.604027 6_3:-43992281 None:intergenic
ATACCTTCTTGGTATAACAA+TGG 0.609585 6_3:+43993884 Msa0951770:CDS
TGGTAATATATGCCATTGGT+TGG 0.614924 6_3:+43992586 Msa0951770:CDS
TCCTTCTTTACACCAACCAA+TGG 0.619153 6_3:-43992598 None:intergenic
ATGGAATGGATTGTCTTGGA+TGG 0.624219 6_3:+43992620 Msa0951770:CDS
TATGCATCCGAGATCAAACT+GGG 0.629598 6_3:-43995777 None:intergenic
AATGCACTAGCAACACTATG+TGG 0.632641 6_3:+43992174 Msa0951770:CDS
GCATAAAGTAGGCATTACAA+TGG 0.632981 6_3:+43995795 Msa0951770:three_prime_UTR
TGGTTTCAACCAGCATTTAG+GGG 0.633107 6_3:+43994171 Msa0951770:CDS
GTGTGGTAATTGGATGTGGA+TGG 0.640076 6_3:+43994080 Msa0951770:CDS
TAGTTATAGAGAAAATGGAA+AGG 0.641926 6_3:+43995575 Msa0951770:three_prime_UTR
GGAATGAGACATTGAAGACA+TGG 0.645340 6_3:+43991206 Msa0951770:CDS
GAGAGGCAAATTGACGGCGA+AGG 0.648088 6_3:-43992394 None:intergenic
CTAATGAAGAATTAAGACTG+AGG 0.648310 6_3:-43995555 None:intergenic
CTTTATGGAGGAGTCAACAC+TGG 0.652964 6_3:-43995735 None:intergenic
ACCATCGTTAAACTTTATGG+AGG 0.653613 6_3:-43995747 None:intergenic
TGGCAAGAGGAATATACAAG+TGG 0.656634 6_3:-43992268 None:intergenic
ATGAAGAATTAAGACTGAGG+GGG 0.657370 6_3:-43995552 None:intergenic
GCTTGAAGAAACTTCACGAG+AGG 0.663335 6_3:-43992411 None:intergenic
CTATGGGGAGGAACAATGTG+CGG 0.665533 6_3:+43994918 Msa0951770:CDS
AATTGGGTGATTAGAAGTAG+GGG 0.666674 6_3:+43995516 Msa0951770:three_prime_UTR
TGGCAAGTAATATCTCAGGA+TGG 0.670260 6_3:+43992547 Msa0951770:CDS
TAAGACCAACTGGACCAAAG+AGG 0.670533 6_3:+43994980 Msa0951770:CDS
AATGAAGAATTAAGACTGAG+GGG 0.682653 6_3:-43995553 None:intergenic
CAACAACCAAAACCACGTGG+TGG 0.685183 6_3:-43991012 None:intergenic
TCCTCCATAAAGTTTAACGA+TGG 0.686192 6_3:+43995746 Msa0951770:three_prime_UTR
CCAATATAATATCCACCACG+TGG 0.694900 6_3:+43991000 None:intergenic
ATGGAAGATAGCAATTCCAG+TGG 0.711281 6_3:+43991225 Msa0951770:CDS
AACCAAGGAAAATTCCAATG+GGG 0.752925 6_3:-43994153 None:intergenic
ATAAAGTAGGCATTACAATG+GGG 0.757583 6_3:+43995797 Msa0951770:three_prime_UTR
AAGCAACAACCAAAACCACG+TGG 0.783784 6_3:-43991015 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAAAATAAAAAGCTTAATT+TGG - chr6_3:43991412-43991431 None:intergenic 10.0%
!!! TTCTTTTTAATTTTCTTTTT+TGG - chr6_3:43993593-43993612 None:intergenic 10.0%
!!! TTACAAATTTACATATTTTT+TGG + chr6_3:43994887-43994906 Msa0951770:intron 10.0%
!!! AAAGAATTTGTTAAAAAAAA+AGG + chr6_3:43995277-43995296 Msa0951770:intron 10.0%
!! CAATTACTAATTATTGAATT+TGG - chr6_3:43991477-43991496 None:intergenic 15.0%
!! AATTCAATAATTAGTAATTG+TGG + chr6_3:43991477-43991496 Msa0951770:intron 15.0%
!!! ATTATAGCTTTTAGTTTATA+AGG + chr6_3:43991768-43991787 Msa0951770:intron 15.0%
!!! TCATTTTCTCAAATTATTAT+CGG + chr6_3:43992907-43992926 Msa0951770:intron 15.0%
!!! TAAACATAAGAACTTTTTTT+TGG - chr6_3:43994775-43994794 None:intergenic 15.0%
!! ATATGTAAATTTGTAAGAAA+AGG - chr6_3:43994883-43994902 None:intergenic 15.0%
!!! TTTCCTTTTTAAAAAAACAA+AGG + chr6_3:43995072-43995091 Msa0951770:intron 15.0%
!!! TTCCTTTTTAAAAAAACAAA+GGG + chr6_3:43995073-43995092 Msa0951770:intron 15.0%
!!! TACTATCTATTTCTCTATTT+TGG + chr6_3:43991357-43991376 Msa0951770:CDS 20.0%
!!! TAAGTTCATGTTTGAAATAA+TGG + chr6_3:43991512-43991531 Msa0951770:intron 20.0%
!!! TAATATATAAGCTAGTTTCT+TGG - chr6_3:43991752-43991771 None:intergenic 20.0%
!! ATAAACTCACAATAAAAAGA+TGG - chr6_3:43991824-43991843 None:intergenic 20.0%
!! GTTCATCATATAATAATAAC+GGG - chr6_3:43991984-43992003 None:intergenic 20.0%
!! CGTTCATCATATAATAATAA+CGG - chr6_3:43991985-43992004 None:intergenic 20.0%
!!! TAATGATTTGTTTAGAACAA+TGG + chr6_3:43992691-43992710 Msa0951770:CDS 20.0%
!! TTATTCTTACCAAATTGAAA+AGG - chr6_3:43992778-43992797 None:intergenic 20.0%
!! AATTCAATGTAATTATGTGT+CGG - chr6_3:43992884-43992903 None:intergenic 20.0%
!!! TATTTTTAGCCTTAATATTC+AGG + chr6_3:43993085-43993104 Msa0951770:intron 20.0%
!!! ATTTTTAGCCTTAATATTCA+GGG + chr6_3:43993086-43993105 Msa0951770:intron 20.0%
!! TCACATAAAGTCAAATTTAT+AGG - chr6_3:43993205-43993224 None:intergenic 20.0%
!!! TATAAATTTGACTTTATGTG+AGG + chr6_3:43993204-43993223 Msa0951770:intron 20.0%
!! ACATAATTTAGTGTAATCAT+AGG + chr6_3:43993335-43993354 Msa0951770:intron 20.0%
!!! GGTTATAATTTATTTGCTTT+TGG + chr6_3:43993936-43993955 Msa0951770:intron 20.0%
!! TGGTTATATGTCTATTTATT+AGG + chr6_3:43994256-43994275 Msa0951770:intron 20.0%
!! ATGAGTTCAATATTACAATT+TGG - chr6_3:43994485-43994504 None:intergenic 20.0%
!! AACTTATCTACTATTAATGT+GGG + chr6_3:43994560-43994579 Msa0951770:intron 20.0%
!! AATTAGAACATAACATTCTT+AGG - chr6_3:43994674-43994693 None:intergenic 20.0%
!!! ACTTTTTTTTGGTAGATAAA+TGG - chr6_3:43994764-43994783 None:intergenic 20.0%
!! AAGGAAATCATAATATAAGT+TGG - chr6_3:43994864-43994883 None:intergenic 20.0%
!!! ATTTACATATTTTTTGGCTT+AGG + chr6_3:43994893-43994912 Msa0951770:intron 20.0%
!!! TTTACATATTTTTTGGCTTA+GGG + chr6_3:43994894-43994913 Msa0951770:intron 20.0%
!!! AACCCTTTGTTTTTTTAAAA+AGG - chr6_3:43995078-43995097 None:intergenic 20.0%
!! TTAAAAGTAGAGATTAAAAG+TGG - chr6_3:43995195-43995214 None:intergenic 20.0%
!! TTCATTAGTTATAGAGAAAA+TGG + chr6_3:43995570-43995589 Msa0951770:three_prime_UTR 20.0%
! AACTTAGTACTATAAGAAAG+TGG + chr6_3:43991053-43991072 Msa0951770:five_prime_UTR 25.0%
!! GTAAAGCTTTTAATCAACAA+TGG - chr6_3:43991130-43991149 None:intergenic 25.0%
!!! ACATCTTTCAAGTTTTTCAA+AGG - chr6_3:43991172-43991191 None:intergenic 25.0%
!! AAGATGTGAAATATGTTTTG+TGG + chr6_3:43991185-43991204 Msa0951770:CDS 25.0%
!! AACTTTTGTCAAAATCACAT+TGG + chr6_3:43991587-43991606 Msa0951770:intron 25.0%
! ACTCTAATCTTAAAACTTCT+TGG + chr6_3:43992306-43992325 Msa0951770:CDS 25.0%
! TGTTATTATGTACATAGCAA+TGG + chr6_3:43992449-43992468 Msa0951770:CDS 25.0%
!! ATGGATATTTTCTATTGCAT+TGG + chr6_3:43992566-43992585 Msa0951770:CDS 25.0%
!! GAATTTACTAAGCTAAGTTT+TGG + chr6_3:43992660-43992679 Msa0951770:CDS 25.0%
!!! TTTTAACTGTCTTTGTTTCT+TGG + chr6_3:43993039-43993058 Msa0951770:intron 25.0%
! TCTCAAATTATTATCAGTGT+CGG - chr6_3:43993310-43993329 None:intergenic 25.0%
!!! TTTTGGCTGAATAAAAGTTT+AGG - chr6_3:43993576-43993595 None:intergenic 25.0%
! AGTATTTCACAAACTATATC+AGG + chr6_3:43993915-43993934 Msa0951770:CDS 25.0%
!!! AAGAAGTTCGATTTTGAAAA+CGG - chr6_3:43994046-43994065 None:intergenic 25.0%
! AACTTCTTGGACATTTATAT+AGG + chr6_3:43994058-43994077 Msa0951770:intron 25.0%
! ATTTATATAGGTGTGGTAAT+TGG + chr6_3:43994070-43994089 Msa0951770:intron 25.0%
!! TATGGTTGGTTACATAAATT+TGG + chr6_3:43994108-43994127 Msa0951770:CDS 25.0%
! GACACTCTTTACATTATAAA+TGG - chr6_3:43994316-43994335 None:intergenic 25.0%
! GAACTTATCTACTATTAATG+TGG + chr6_3:43994559-43994578 Msa0951770:intron 25.0%
! AAATCTGTTTCAGCTTAAAT+AGG + chr6_3:43994632-43994651 Msa0951770:intron 25.0%
! GTAGATAAATGGTACAAAAT+AGG - chr6_3:43994753-43994772 None:intergenic 25.0%
! TCATTATTTATAAGACCAAC+TGG + chr6_3:43994970-43994989 Msa0951770:CDS 25.0%
! ATCAAACATAATTACCTCTT+TGG - chr6_3:43994997-43995016 None:intergenic 25.0%
! TTATACAGATTGAAAATCGA+AGG - chr6_3:43995160-43995179 None:intergenic 25.0%
!! TTCGACTTGTAAAAATATGA+AGG - chr6_3:43995234-43995253 None:intergenic 25.0%
!! AAAGGATGTTAACATTTTCA+TGG + chr6_3:43995295-43995314 Msa0951770:intron 25.0%
! AAGTTTCAGATGAAATTCTT+AGG - chr6_3:43995491-43995510 None:intergenic 25.0%
!! GAATTTCATCTGAAACTTAT+AGG + chr6_3:43995493-43995512 Msa0951770:three_prime_UTR 25.0%
!! ATCTGAAACTTATAGGAATT+GGG + chr6_3:43995500-43995519 Msa0951770:three_prime_UTR 25.0%
! TAATGAAGAATTAAGACTGA+GGG - chr6_3:43995557-43995576 None:intergenic 25.0%
! TAGTTATAGAGAAAATGGAA+AGG + chr6_3:43995575-43995594 Msa0951770:three_prime_UTR 25.0%
! ATAAGAAAGTGGAGTCTTAT+TGG + chr6_3:43991064-43991083 Msa0951770:five_prime_UTR 30.0%
AAAGTAGAATCTCACTCATA+TGG + chr6_3:43991099-43991118 Msa0951770:exon 30.0%
ATCAAAAGCAATTTAAGCTC+TGG + chr6_3:43991717-43991736 Msa0951770:intron 30.0%
!!! TTTTAGTTTATAAGGTCGTC+TGG + chr6_3:43991776-43991795 Msa0951770:intron 30.0%
!!! AGTCTTTTTAAAACAGTGTC+AGG - chr6_3:43991857-43991876 None:intergenic 30.0%
! AATTTGTTTAGTGAGCGTAA+GGG + chr6_3:43991888-43991907 Msa0951770:intron 30.0%
TGTGTCATATAAGAGACTTT+AGG + chr6_3:43991941-43991960 Msa0951770:intron 30.0%
TCACATGTAAAATTGCAGTA+TGG + chr6_3:43992144-43992163 Msa0951770:intron 30.0%
ATGCTGGTATTTATCTTCAA+AGG + chr6_3:43992226-43992245 Msa0951770:CDS 30.0%
GTATTTATCTTCAAAGGTCA+TGG + chr6_3:43992232-43992251 Msa0951770:CDS 30.0%
AGAGTTGCATATAGATGAAT+TGG - chr6_3:43992291-43992310 None:intergenic 30.0%
! TAGTAGAATGGCATATTTTC+CGG - chr6_3:43992358-43992377 None:intergenic 30.0%
TCTTCATCAGTGTATTTGAT+TGG + chr6_3:43992505-43992524 Msa0951770:CDS 30.0%
CTTCATCAGTGTATTTGATT+GGG + chr6_3:43992506-43992525 Msa0951770:CDS 30.0%
TTCATCAGTGTATTTGATTG+GGG + chr6_3:43992507-43992526 Msa0951770:CDS 30.0%
TTCTCAAATTATTATCGGTG+TGG + chr6_3:43992912-43992931 Msa0951770:intron 30.0%
TTATGTGAGGAATTGAAATC+TGG + chr6_3:43993217-43993236 Msa0951770:intron 30.0%
TGTAATCATAGGTATCATGT+CGG + chr6_3:43993346-43993365 Msa0951770:intron 30.0%
! ATATTGACTACTATGAAGCA+AGG - chr6_3:43993425-43993444 None:intergenic 30.0%
ATCACTATTGGTAAAGATGA+AGG - chr6_3:43993835-43993854 None:intergenic 30.0%
CTTTACCAATAGTGATGATA+TGG + chr6_3:43993839-43993858 Msa0951770:CDS 30.0%
ATGTACCATATCATCACTAT+TGG - chr6_3:43993847-43993866 None:intergenic 30.0%
ATACCTTCTTGGTATAACAA+TGG + chr6_3:43993884-43993903 Msa0951770:CDS 30.0%
TAACCATTGTTATACCAAGA+AGG - chr6_3:43993890-43993909 None:intergenic 30.0%
GTTACTCTGGTAAAATAAAG+GGG - chr6_3:43994010-43994029 None:intergenic 30.0%
CGTTACTCTGGTAAAATAAA+GGG - chr6_3:43994011-43994030 None:intergenic 30.0%
TCGTTACTCTGGTAAAATAA+AGG - chr6_3:43994012-43994031 None:intergenic 30.0%
! GTTTTCAAAATCGAACTTCT+TGG + chr6_3:43994045-43994064 Msa0951770:intron 30.0%
AAACCAAGGAAAATTCCAAT+GGG - chr6_3:43994157-43994176 None:intergenic 30.0%
! CCAACTTCATTGATGATTTA+GGG - chr6_3:43994239-43994258 None:intergenic 30.0%
! ACCAACTTCATTGATGATTT+AGG - chr6_3:43994240-43994259 None:intergenic 30.0%
! GTGTTATTGATTATGATTGC+AGG + chr6_3:43995317-43995336 Msa0951770:intron 30.0%
! TTCAAATCACATCGTTTTGA+AGG - chr6_3:43995386-43995405 None:intergenic 30.0%
! GATTTGAAATTCTCAGTTTC+TGG + chr6_3:43995398-43995417 Msa0951770:exon 30.0%
! CATCTGAAACTTATAGGAAT+TGG + chr6_3:43995499-43995518 Msa0951770:three_prime_UTR 30.0%
AATGAAGAATTAAGACTGAG+GGG - chr6_3:43995556-43995575 None:intergenic 30.0%
CTAATGAAGAATTAAGACTG+AGG - chr6_3:43995558-43995577 None:intergenic 30.0%
CATAAAGTAGGCATTACAAT+GGG + chr6_3:43995796-43995815 Msa0951770:three_prime_UTR 30.0%
ATAAAGTAGGCATTACAATG+GGG + chr6_3:43995797-43995816 Msa0951770:three_prime_UTR 30.0%
!! TGGAGTCTTATTGGTATATG+TGG + chr6_3:43991073-43991092 Msa0951770:five_prime_UTR 35.0%
!!! CTACTTTTTCAGAACCTCAT+TGG + chr6_3:43991256-43991275 Msa0951770:CDS 35.0%
TCTTCAAATTCCATCTATGC+TGG + chr6_3:43991280-43991299 Msa0951770:CDS 35.0%
! TTGTCAAAATCACATTGGCT+AGG + chr6_3:43991592-43991611 Msa0951770:intron 35.0%
! CAATTTGTTTAGTGAGCGTA+AGG + chr6_3:43991887-43991906 Msa0951770:intron 35.0%
! CATATAAGAGACTTTAGGAG+AGG + chr6_3:43991946-43991965 Msa0951770:intron 35.0%
! ATGAACGAACTAGTTCTTGA+AGG + chr6_3:43991998-43992017 Msa0951770:intron 35.0%
!! ATGCAGAAGGAGTATTAAGA+AGG + chr6_3:43992045-43992064 Msa0951770:intron 35.0%
GCAGGAAAATTTCAAAATGC+TGG + chr6_3:43992210-43992229 Msa0951770:CDS 35.0%
CATATAGATGAATTGGCAAG+AGG - chr6_3:43992284-43992303 None:intergenic 35.0%
CATGTAGGGAATTAGTAGAA+TGG - chr6_3:43992370-43992389 None:intergenic 35.0%
GTATTTGATTGGGGAATGAT+TGG + chr6_3:43992516-43992535 Msa0951770:CDS 35.0%
! GCATTGGTAATATATGCCAT+TGG + chr6_3:43992582-43992601 Msa0951770:CDS 35.0%
TGGTAATATATGCCATTGGT+TGG + chr6_3:43992586-43992605 Msa0951770:CDS 35.0%
ATTGTCTTGGATGGCATTTA+GGG + chr6_3:43992629-43992648 Msa0951770:CDS 35.0%
GATGGCATTTAGGGAATTAT+GGG + chr6_3:43992638-43992657 Msa0951770:CDS 35.0%
!!! CTGTTGGTTCCTTTTCAATT+TGG + chr6_3:43992766-43992785 Msa0951770:CDS 35.0%
CAAGATAAATATTCGACACC+AGG - chr6_3:43992843-43992862 None:intergenic 35.0%
TCAAATTATTATCGGTGTGG+TGG + chr6_3:43992915-43992934 Msa0951770:intron 35.0%
!! TTAGCCTTAATATTCAGGGT+TGG + chr6_3:43993090-43993109 Msa0951770:intron 35.0%
TGTTCCAACCCTGAATATTA+AGG - chr6_3:43993097-43993116 None:intergenic 35.0%
TTGGAATAAGTTCAGCAGTA+AGG + chr6_3:43993129-43993148 Msa0951770:CDS 35.0%
! GTTTAGGTTAGTTCAGTCTT+AGG - chr6_3:43993560-43993579 None:intergenic 35.0%
!! AAAGAGTATTTGGATGCTCT+TGG - chr6_3:43993735-43993754 None:intergenic 35.0%
AGCATCCAAATACTCTTTCT+TGG + chr6_3:43993737-43993756 Msa0951770:intron 35.0%
ATCCAAATACTCTTTCTTGG+TGG + chr6_3:43993740-43993759 Msa0951770:intron 35.0%
AGTGAATTAGCATACCTTCT+TGG + chr6_3:43993873-43993892 Msa0951770:CDS 35.0%
! AGTGACTATTTTCGTTACTC+TGG - chr6_3:43994023-43994042 None:intergenic 35.0%
CTTGGACATTTATATAGGTG+TGG + chr6_3:43994063-43994082 Msa0951770:intron 35.0%
TTGGCATGCTATTACATTGT+TGG + chr6_3:43994127-43994146 Msa0951770:CDS 35.0%
AACCAAGGAAAATTCCAATG+GGG - chr6_3:43994156-43994175 None:intergenic 35.0%
GAAACCAAGGAAAATTCCAA+TGG - chr6_3:43994158-43994177 None:intergenic 35.0%
TTGGTTTCAACCAGCATTTA+GGG + chr6_3:43994170-43994189 Msa0951770:CDS 35.0%
! TAGGGAGGATACATTTTCTA+GGG - chr6_3:43994221-43994240 None:intergenic 35.0%
! TTAGGGAGGATACATTTTCT+AGG - chr6_3:43994222-43994241 None:intergenic 35.0%
! ACTTCATTGATGATTTAGGG+AGG - chr6_3:43994236-43994255 None:intergenic 35.0%
CCCTAAATCATCAATGAAGT+TGG + chr6_3:43994236-43994255 Msa0951770:intron 35.0%
TCTTAACTGTTTCAACGTGA+TGG + chr6_3:43994359-43994378 Msa0951770:intron 35.0%
GGTACCAAATCCTATCATTT+CGG - chr6_3:43994464-43994483 None:intergenic 35.0%
! TTTCATCTGAAATTCGAGGT+AGG - chr6_3:43994606-43994625 None:intergenic 35.0%
! GTCATTTCATCTGAAATTCG+AGG - chr6_3:43994610-43994629 None:intergenic 35.0%
! GTCTTTTACCAAACTATGAG+TGG + chr6_3:43994724-43994743 Msa0951770:intron 35.0%
CATTCTACATATACTTTGCC+TGG + chr6_3:43994817-43994836 Msa0951770:intron 35.0%
TTAAAACCATGATGCTTTCC+AGG - chr6_3:43994838-43994857 None:intergenic 35.0%
!!! ATTTTTTGGCTTAGGGTCTA+TGG + chr6_3:43994901-43994920 Msa0951770:intron 35.0%
!!! TTTTTTGGCTTAGGGTCTAT+GGG + chr6_3:43994902-43994921 Msa0951770:intron 35.0%
! CGGCAATATTCTTCAGATTT+TGG + chr6_3:43994938-43994957 Msa0951770:CDS 35.0%
AAGCATTCACTGCAAAATCT+TGG - chr6_3:43995029-43995048 None:intergenic 35.0%
TTAGAGTCACATTAGAGCTA+TGG + chr6_3:43995463-43995482 Msa0951770:three_prime_UTR 35.0%
GAATTGGGTGATTAGAAGTA+GGG + chr6_3:43995515-43995534 Msa0951770:three_prime_UTR 35.0%
AATTGGGTGATTAGAAGTAG+GGG + chr6_3:43995516-43995535 Msa0951770:three_prime_UTR 35.0%
ATGAAGAATTAAGACTGAGG+GGG - chr6_3:43995555-43995574 None:intergenic 35.0%
TCCTCCATAAAGTTTAACGA+TGG + chr6_3:43995746-43995765 Msa0951770:three_prime_UTR 35.0%
ACCATCGTTAAACTTTATGG+AGG - chr6_3:43995750-43995769 None:intergenic 35.0%
GGTACCATCGTTAAACTTTA+TGG - chr6_3:43995753-43995772 None:intergenic 35.0%
GCATAAAGTAGGCATTACAA+TGG + chr6_3:43995795-43995814 Msa0951770:three_prime_UTR 35.0%
GGAATGAGACATTGAAGACA+TGG + chr6_3:43991206-43991225 Msa0951770:CDS 40.0%
ATGGAAGATAGCAATTCCAG+TGG + chr6_3:43991225-43991244 Msa0951770:CDS 40.0%
AAAAGTAGAGACAAAGCCAC+TGG - chr6_3:43991244-43991263 None:intergenic 40.0%
TGGAATTTGAAGAGCCAATG+AGG - chr6_3:43991273-43991292 None:intergenic 40.0%
TCCATCTATGCTGGTCATAT+TGG + chr6_3:43991289-43991308 Msa0951770:CDS 40.0%
ACCAATATGACCAGCATAGA+TGG - chr6_3:43991293-43991312 None:intergenic 40.0%
! TGTATGAGTTGAGATGCAGA+AGG + chr6_3:43992032-43992051 Msa0951770:intron 40.0%
!! CAGAAGGAGTATTAAGAAGG+AGG + chr6_3:43992048-43992067 Msa0951770:intron 40.0%
AATGCACTAGCAACACTATG+TGG + chr6_3:43992174-43992193 Msa0951770:CDS 40.0%
! ATTTTCCTGCACCATAAGCT+TGG - chr6_3:43992200-43992219 None:intergenic 40.0%
TGGCAAGAGGAATATACAAG+TGG - chr6_3:43992271-43992290 None:intergenic 40.0%
!! GGGAATGATTGGTTTAGCAA+TGG + chr6_3:43992527-43992546 Msa0951770:CDS 40.0%
GCAATGGCAAGTAATATCTC+AGG + chr6_3:43992543-43992562 Msa0951770:CDS 40.0%
TGGCAAGTAATATCTCAGGA+TGG + chr6_3:43992547-43992566 Msa0951770:CDS 40.0%
TCCTTCTTTACACCAACCAA+TGG - chr6_3:43992601-43992620 None:intergenic 40.0%
! TTGGTTGGTGTAAAGAAGGA+TGG + chr6_3:43992601-43992620 Msa0951770:CDS 40.0%
TGGTGTAAAGAAGGATGGAA+TGG + chr6_3:43992606-43992625 Msa0951770:CDS 40.0%
!! AAGGATGGAATGGATTGTCT+TGG + chr6_3:43992616-43992635 Msa0951770:CDS 40.0%
!! ATGGAATGGATTGTCTTGGA+TGG + chr6_3:43992620-43992639 Msa0951770:CDS 40.0%
GATTGTCTTGGATGGCATTT+AGG + chr6_3:43992628-43992647 Msa0951770:CDS 40.0%
GGATGGCATTTAGGGAATTA+TGG + chr6_3:43992637-43992656 Msa0951770:CDS 40.0%
TATCAAGATGACCAGCAAGA+AGG - chr6_3:43992734-43992753 None:intergenic 40.0%
GATAATCCTGTCATTGCTGT+TGG + chr6_3:43992750-43992769 Msa0951770:CDS 40.0%
AAACACATACTCCTCGGATT+AGG + chr6_3:43992812-43992831 Msa0951770:intron 40.0%
ATGAAGCACAAACACAGACA+CGG + chr6_3:43993253-43993272 Msa0951770:intron 40.0%
! AAGGACATTCCACTGATTAG+GGG - chr6_3:43993406-43993425 None:intergenic 40.0%
! CAAGGACATTCCACTGATTA+GGG - chr6_3:43993407-43993426 None:intergenic 40.0%
TTTGTTCTATACACCAGCAC+AGG + chr6_3:43993456-43993475 Msa0951770:intron 40.0%
ACTAACATGAAAACCTGTGC+TGG - chr6_3:43993472-43993491 None:intergenic 40.0%
!! TGCCACCAAGAAAGAGTATT+TGG - chr6_3:43993745-43993764 None:intergenic 40.0%
ATGTCTCAGTCTCTTCTCAT+TGG + chr6_3:43993765-43993784 Msa0951770:intron 40.0%
ATAGGTGTGGTAATTGGATG+TGG + chr6_3:43994076-43994095 Msa0951770:intron 40.0%
! CTAAATGCTGGTTGAAACCA+AGG - chr6_3:43994171-43994190 None:intergenic 40.0%
CTTGGTTTCAACCAGCATTT+AGG + chr6_3:43994169-43994188 Msa0951770:CDS 40.0%
TGGTTTCAACCAGCATTTAG+GGG + chr6_3:43994171-43994190 Msa0951770:CDS 40.0%
CTCACACCTAGTCGTATTAT+AGG + chr6_3:43994409-43994428 Msa0951770:intron 40.0%
CTCAAGCCTATAATACGACT+AGG - chr6_3:43994418-43994437 None:intergenic 40.0%
GGCTTGAGTGATTAATATGC+AGG + chr6_3:43994430-43994449 Msa0951770:intron 40.0%
GTGATTAATATGCAGGTCGT+TGG + chr6_3:43994437-43994456 Msa0951770:intron 40.0%
TGGTCCGAAATGATAGGATT+TGG + chr6_3:43994457-43994476 Msa0951770:intron 40.0%
!!! TTTTTGGCTTAGGGTCTATG+GGG + chr6_3:43994903-43994922 Msa0951770:intron 40.0%
AATTACCTCTTTGGTCCAGT+TGG - chr6_3:43994988-43995007 None:intergenic 40.0%
ATGATTGCAGGTAGAGCAAA+CGG + chr6_3:43995329-43995348 Msa0951770:intron 40.0%
GGAATTGGGTGATTAGAAGT+AGG + chr6_3:43995514-43995533 Msa0951770:three_prime_UTR 40.0%
TATGCATCCGAGATCAAACT+GGG - chr6_3:43995780-43995799 None:intergenic 40.0%
TTATGCATCCGAGATCAAAC+TGG - chr6_3:43995781-43995800 None:intergenic 40.0%
TGATCTCGGATGCATAAAGT+AGG + chr6_3:43995784-43995803 Msa0951770:three_prime_UTR 40.0%
CATTACAATGGGGTGCAATT+GGG + chr6_3:43995807-43995826 Msa0951770:three_prime_UTR 40.0%
AAGCAACAACCAAAACCACG+TGG - chr6_3:43991018-43991037 None:intergenic 45.0%
!!! ACGTGGTTTTGGTTGTTGCT+TGG + chr6_3:43991017-43991036 Msa0951770:five_prime_UTR 45.0%
!!! CGTGGTTTTGGTTGTTGCTT+GGG + chr6_3:43991018-43991037 Msa0951770:five_prime_UTR 45.0%
ACACTATGTGGCCAAGCTTA+TGG + chr6_3:43992186-43992205 Msa0951770:CDS 45.0%
AAAGAGATAGCCGATCTTGC+CGG + chr6_3:43992336-43992355 Msa0951770:CDS 45.0%
! GGCATATTTTCCGGCAAGAT+CGG - chr6_3:43992349-43992368 None:intergenic 45.0%
ACGGCGAAGGAAAACATGTA+GGG - chr6_3:43992384-43992403 None:intergenic 45.0%
CTTCACGAGAGGCAAATTGA+CGG - chr6_3:43992403-43992422 None:intergenic 45.0%
GCTTGAAGAAACTTCACGAG+AGG - chr6_3:43992414-43992433 None:intergenic 45.0%
! GCCATTGGTTGGTGTAAAGA+AGG + chr6_3:43992597-43992616 Msa0951770:CDS 45.0%
GCTTGCATTATCCTTCTTGC+TGG + chr6_3:43992720-43992739 Msa0951770:CDS 45.0%
AAGGAACCAACAGCAATGAC+AGG - chr6_3:43992759-43992778 None:intergenic 45.0%
GCTACGAAACACATACTCCT+CGG + chr6_3:43992806-43992825 Msa0951770:intron 45.0%
!! ATTATGTGTCGGTGTCGTGT+CGG - chr6_3:43992873-43992892 None:intergenic 45.0%
! TGGACTTGTTTGTGTCGTGT+CGG + chr6_3:43992935-43992954 Msa0951770:intron 45.0%
! TGGAACATGATGCTGCTTCT+TGG + chr6_3:43993110-43993129 Msa0951770:CDS 45.0%
ACAAACACAGACACGGACAT+CGG + chr6_3:43993260-43993279 Msa0951770:intron 45.0%
CATAGGTATCATGTCGGTGT+TGG + chr6_3:43993352-43993371 Msa0951770:intron 45.0%
! GCAAGGACATTCCACTGATT+AGG - chr6_3:43993408-43993427 None:intergenic 45.0%
TAGAGACACGAACACTTGCA+AGG - chr6_3:43993692-43993711 None:intergenic 45.0%
GTTCGTGTCTCTAATACCCT+TGG + chr6_3:43993699-43993718 Msa0951770:intron 45.0%
TCTTGGATGTGACATGCCAA+GGG - chr6_3:43993718-43993737 None:intergenic 45.0%
GTGTGGTAATTGGATGTGGA+TGG + chr6_3:43994080-43994099 Msa0951770:CDS 45.0%
TGGATGTGGATGGCAAGTTA+TGG + chr6_3:43994090-43994109 Msa0951770:CDS 45.0%
TGTGGATGGCAAGTTATGGT+TGG + chr6_3:43994094-43994113 Msa0951770:CDS 45.0%
TACATTGTTGGACTCCCCAT+TGG + chr6_3:43994139-43994158 Msa0951770:CDS 45.0%
! CTCCCCATTGGAATTTTCCT+TGG + chr6_3:43994151-43994170 Msa0951770:CDS 45.0%
ATACCTTGACCCCTAAATGC+TGG - chr6_3:43994183-43994202 None:intergenic 45.0%
ATACGACTAGGTGTGAGTAG+TGG - chr6_3:43994406-43994425 None:intergenic 45.0%
ATAGGCGACCACTCATAGTT+TGG - chr6_3:43994735-43994754 None:intergenic 45.0%
!! ACTTTGCCTGGAAAGCATCA+TGG + chr6_3:43994829-43994848 Msa0951770:intron 45.0%
TAAGACCAACTGGACCAAAG+AGG + chr6_3:43994980-43994999 Msa0951770:CDS 45.0%
CGGCTAATCGCATGAGAATT+TGG + chr6_3:43995349-43995368 Msa0951770:CDS 45.0%
GTGCACATGCATAGTCACTT+TGG + chr6_3:43995430-43995449 Msa0951770:three_prime_UTR 45.0%
CTTTATGGAGGAGTCAACAC+TGG - chr6_3:43995738-43995757 None:intergenic 45.0%
ACCATAGCCCAGTTTGATCT+CGG + chr6_3:43995770-43995789 Msa0951770:three_prime_UTR 45.0%
GCATTACAATGGGGTGCAAT+TGG + chr6_3:43995806-43995825 Msa0951770:three_prime_UTR 45.0%
CAACAACCAAAACCACGTGG+TGG - chr6_3:43991015-43991034 None:intergenic 50.0%
GACGGCGAAGGAAAACATGT+AGG - chr6_3:43992385-43992404 None:intergenic 50.0%
ACTGGAACACCCCTAATCAG+TGG + chr6_3:43993394-43993413 Msa0951770:intron 50.0%
CTCTTGGATGTGACATGCCA+AGG - chr6_3:43993719-43993738 None:intergenic 50.0%
CAACCAGCATTTAGGGGTCA+AGG + chr6_3:43994177-43994196 Msa0951770:CDS 50.0%
GGTCGTTGGTCCGAAATGAT+AGG + chr6_3:43994451-43994470 Msa0951770:intron 50.0%
CTATGGGGAGGAACAATGTG+CGG + chr6_3:43994918-43994937 Msa0951770:CDS 50.0%
! GACTGAGGGGGCTTGATTTT+GGG - chr6_3:43995543-43995562 None:intergenic 50.0%
! AGACTGAGGGGGCTTGATTT+TGG - chr6_3:43995544-43995563 None:intergenic 50.0%
ACGAAATTCTAGCCCGTGCT+TGG - chr6_3:43995637-43995656 None:intergenic 50.0%
TCCGAGATCAAACTGGGCTA+TGG - chr6_3:43995774-43995793 None:intergenic 50.0%
TGTGGCCAAGCTTATGGTGC+AGG + chr6_3:43992192-43992211 Msa0951770:CDS 55.0%
GAGAGGCAAATTGACGGCGA+AGG - chr6_3:43992397-43992416 None:intergenic 55.0%
! TCCTCGGATTAGGCATGTCC+TGG + chr6_3:43992822-43992841 Msa0951770:intron 55.0%
ACCAGGACATGCCTAATCCG+AGG - chr6_3:43992826-43992845 None:intergenic 55.0%
TTCCAGTGTCAGACACGCGT+CGG - chr6_3:43993381-43993400 None:intergenic 55.0%
TTGGCTTAGGGTCTATGGGG+AGG + chr6_3:43994906-43994925 Msa0951770:intron 55.0%
ATTCTAGCCCGTGCTTGGCA+CGG - chr6_3:43995632-43995651 None:intergenic 55.0%
GTAGTGACCCGTGCCAAGCA+CGG + chr6_3:43995621-43995640 Msa0951770:three_prime_UTR 60.0%
TAGTGACCCGTGCCAAGCAC+GGG + chr6_3:43995622-43995641 Msa0951770:three_prime_UTR 60.0%
TTCTAGCCCGTGCTTGGCAC+GGG - chr6_3:43995631-43995650 None:intergenic 60.0%
CACCGACGCGTGTCTGACAC+TGG + chr6_3:43993376-43993395 Msa0951770:intron 65.0%
Chromosome Type Strat End Strand Name
chr6_3 gene 43991012 43995849 43991012 ID=Msa0951770;Name=Msa0951770
chr6_3 mRNA 43991012 43995849 43991012 ID=Msa0951770-mRNA-1;Parent=Msa0951770;Name=Msa0951770-mRNA-1;_AED=0.19;_eAED=0.19;_QI=106|0.83|0.85|1|1|1|7|445|444
chr6_3 exon 43991012 43991378 43991012 ID=Msa0951770-mRNA-1:exon:10029;Parent=Msa0951770-mRNA-1
chr6_3 exon 43992162 43992787 43992162 ID=Msa0951770-mRNA-1:exon:10030;Parent=Msa0951770-mRNA-1
chr6_3 exon 43993094 43993150 43993094 ID=Msa0951770-mRNA-1:exon:10031;Parent=Msa0951770-mRNA-1
chr6_3 exon 43993818 43993936 43993818 ID=Msa0951770-mRNA-1:exon:10032;Parent=Msa0951770-mRNA-1
chr6_3 exon 43994080 43994198 43994080 ID=Msa0951770-mRNA-1:exon:10033;Parent=Msa0951770-mRNA-1
chr6_3 exon 43994915 43995001 43994915 ID=Msa0951770-mRNA-1:exon:10034;Parent=Msa0951770-mRNA-1
chr6_3 exon 43995339 43995849 43995339 ID=Msa0951770-mRNA-1:exon:10035;Parent=Msa0951770-mRNA-1
chr6_3 five_prime_UTR 43991012 43991117 43991012 ID=Msa0951770-mRNA-1:five_prime_utr;Parent=Msa0951770-mRNA-1
chr6_3 CDS 43991118 43991378 43991118 ID=Msa0951770-mRNA-1:cds;Parent=Msa0951770-mRNA-1
chr6_3 CDS 43992162 43992787 43992162 ID=Msa0951770-mRNA-1:cds;Parent=Msa0951770-mRNA-1
chr6_3 CDS 43993094 43993150 43993094 ID=Msa0951770-mRNA-1:cds;Parent=Msa0951770-mRNA-1
chr6_3 CDS 43993818 43993936 43993818 ID=Msa0951770-mRNA-1:cds;Parent=Msa0951770-mRNA-1
chr6_3 CDS 43994080 43994198 43994080 ID=Msa0951770-mRNA-1:cds;Parent=Msa0951770-mRNA-1
chr6_3 CDS 43994915 43995001 43994915 ID=Msa0951770-mRNA-1:cds;Parent=Msa0951770-mRNA-1
chr6_3 CDS 43995339 43995404 43995339 ID=Msa0951770-mRNA-1:cds;Parent=Msa0951770-mRNA-1
chr6_3 three_prime_UTR 43995405 43995849 43995405 ID=Msa0951770-mRNA-1:three_prime_utr;Parent=Msa0951770-mRNA-1
Gene Sequence

>Msa0951770

ATGGAAGCACCATTGTTGATTAAAAGCTTTACTTCAGAAAATGATTACTTACCTTTGAAAAACTTGAAAGATGTGAAATATGTTTTGTGGAATGAGACATTGAAGACATGGAAGATAGCAATTCCAGTGGCTTTGTCTCTACTTTTTCAGAACCTCATTGGCTCTTCAAATTCCATCTATGCTGGTCATATTGGTGATATTCAGCTCTCTTCTTACTCTGTGTATCAAAGTGTCATCACTACTATCTATTTCTCTATTTTGTATGGTATGTCAAATGCACTAGCAACACTATGTGGCCAAGCTTATGGTGCAGGAAAATTTCAAAATGCTGGTATTTATCTTCAAAGGTCATGGATAGTACTCTTCACCACTTGTATATTCCTCTTGCCAATTCATCTATATGCAACTCTAATCTTAAAACTTCTTGGTCAAGAAAAAGAGATAGCCGATCTTGCCGGAAAATATGCCATTCTACTAATTCCCTACATGTTTTCCTTCGCCGTCAATTTGCCTCTCGTGAAGTTTCTTCAAGCACAAAGCAAAGTTAATGTTATTATGTACATAGCAATGGTTACATTACTCATTCAAAATGTTCTACTTTACATCTTCATCAGTGTATTTGATTGGGGAATGATTGGTTTAGCAATGGCAAGTAATATCTCAGGATGGATATTTTCTATTGCATTGGTAATATATGCCATTGGTTGGTGTAAAGAAGGATGGAATGGATTGTCTTGGATGGCATTTAGGGAATTATGGGAATTTACTAAGCTAAGTTTTGGTTCATCTGTAATGATTTGTTTAGAACAATGGTATACTGCTTGCATTATCCTTCTTGCTGGTCATCTTGATAATCCTGTCATTGCTGTTGGTTCCTTTTCAATTTGCCTTAATATTCAGGGTTGGAACATGATGCTGCTTCTTGGAATAAGTTCAGCAGTAAGTAAAGAAAAATTTGCCTTCATCTTTACCAATAGTGATGATATGGTACATGCTGCTAGTGAATTAGCATACCTTCTTGGTATAACAATGGTTATCAACAGTATTTCACAAACTATATCAGGTGTGGTAATTGGATGTGGATGGCAAGTTATGGTTGGTTACATAAATTTGGCATGCTATTACATTGTTGGACTCCCCATTGGAATTTTCCTTGGTTTCAACCAGCATTTAGGGGTCAAGGGTCTATGGGGAGGAACAATGTGCGGCAATATTCTTCAGATTTTGGTGCTCATAGTCATTATTTATAAGACCAACTGGACCAAAGAGGTAGAGCAAACGGCTAATCGCATGAGAATTTGGAGCTCTAACAACCTTCAAAACGATGTGATTTGA
Protein sequence

>Msa0951770

MEAPLLIKSFTSENDYLPLKNLKDVKYVLWNETLKTWKIAIPVALSLLFQNLIGSSNSIYAGHIGDIQLSSYSVYQSVITTIYFSILYGMSNALATLCGQAYGAGKFQNAGIYLQRSWIVLFTTCIFLLPIHLYATLILKLLGQEKEIADLAGKYAILLIPYMFSFAVNLPLVKFLQAQSKVNVIMYIAMVTLLIQNVLLYIFISVFDWGMIGLAMASNISGWIFSIALVIYAIGWCKEGWNGLSWMAFRELWEFTKLSFGSSVMICLEQWYTACIILLAGHLDNPVIAVGSFSICLNIQGWNMMLLLGISSAVSKEKFAFIFTNSDDMVHAASELAYLLGITMVINSISQTISGVVIGCGWQVMVGYINLACYYIVGLPIGIFLGFNQHLGVKGLWGGTMCGNILQILVLIVIIYKTNWTKEVEQTANRMRIWSSNNLQNDVI*