AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0550760


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0550760 MtrunA17_Chr4g0035691 97.683 259 6 0 222 480 19 277 0.0 517
Msa0550760 MtrunA17_Chr4g0035681 89.610 231 18 4 1 227 1 229 1.01e-141 405
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0550760 AT2G21370.1 71.868 423 119 0 56 478 53 475 0.0 646
Msa0550760 AT2G21370.2 73.684 380 100 0 99 478 3 382 0.0 593
Msa0550760 AT2G21370.4 72.626 358 98 0 56 413 53 410 0.0 554
Msa0550760 AT2G21370.3 74.921 315 79 0 99 413 3 317 4.59e-178 502

Find 124 sgRNAs with CRISPR-Local

Find 374 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCCTTTATGTTCCTGAAAA+TGG 0.083707 4_1:+46299647 None:intergenic
AGTCAAGTTTCTATGTTATT+TGG 0.172075 4_1:+46304870 Msa0550760:three_prime_UTR
TGAATACTTGCATGGAATTT+TGG 0.206439 4_1:+46303869 Msa0550760:CDS
AACTCCAATTGCTTGTTTAA+AGG 0.241909 4_1:+46301159 Msa0550760:CDS
AGAGACATTGATACTGTTCT+TGG 0.256310 4_1:-46299939 None:intergenic
AACTGCATTGTTGGCAATAA+AGG 0.290593 4_1:+46304726 Msa0550760:CDS
GAATCGAGGATTCTCGGTTT+GGG 0.302099 4_1:+46302283 Msa0550760:CDS
TGATTCTTAGGTTACATCAT+TGG 0.316523 4_1:+46302224 Msa0550760:intron
GGGTTGGACTTTGGCACTTC+CGG 0.317976 4_1:+46300017 Msa0550760:CDS
CTTATCTTCCCAATGGATAA+GGG 0.320824 4_1:-46299724 None:intergenic
AAACAAGCAATTGGAGTTCC+AGG 0.322393 4_1:-46301154 None:intergenic
ATACGTCAAAGATGTTAAAA+TGG 0.337262 4_1:-46299787 None:intergenic
GTCATCGCCTTGATGATAAA+TGG 0.338306 4_1:+46302313 Msa0550760:CDS
CAGTACCTTGGAGCCAAATC+TGG 0.341368 4_1:-46302495 None:intergenic
GTTGGTGGTGCTTCAAATAC+TGG 0.348663 4_1:+46302339 Msa0550760:CDS
GGAAATCTTTCACCAGCTTT+TGG 0.354679 4_1:-46302462 None:intergenic
TCTTATCTTCCCAATGGATA+AGG 0.356064 4_1:-46299725 None:intergenic
GATTCTTAGGTTACATCATT+GGG 0.360067 4_1:+46302225 Msa0550760:intron
ATTGTGTCGATTTCTATTGA+TGG 0.361270 4_1:+46300378 Msa0550760:CDS
TCCTCCTTTAAACAAGCAAT+TGG 0.368678 4_1:-46301163 None:intergenic
TCCGGTTGCAGATCCAGATT+TGG 0.369397 4_1:+46302482 Msa0550760:CDS
GACGGTAAAAGATGAGAATA+TGG 0.373140 4_1:-46301121 None:intergenic
TGGCAGAGGATAGTAGTCTA+AGG 0.378260 4_1:-46302442 None:intergenic
AAAAGCTGGTGAAAGATTTC+CGG 0.379132 4_1:+46302464 Msa0550760:CDS
TTCCATATGCAGCTTCTGTT+TGG 0.383919 4_1:-46304705 None:intergenic
AGAATCGAGGATTCTCGGTT+TGG 0.386944 4_1:+46302282 Msa0550760:CDS
GATGGATATGAGTCCACTTC+AGG 0.389322 4_1:-46301082 None:intergenic
TCCTTTATGTTCCTGAAAAT+GGG 0.390367 4_1:+46299648 None:intergenic
TGGCTTCTTCATGGAAAGCT+TGG 0.398484 4_1:+46300907 Msa0550760:CDS
GATGTTAAAATGGTGCTTGC+TGG 0.405842 4_1:-46299777 None:intergenic
CAACTACTATCATTGTTGAT+AGG 0.411174 4_1:+46300409 Msa0550760:CDS
AGCTATACTGTCAGTGGTTC+CGG 0.412191 4_1:-46301760 None:intergenic
TCCTTGTTCTAACTTACTCT+TGG 0.416459 4_1:-46304931 None:intergenic
GGAAACAGGTTATTACTGTT+AGG 0.425830 4_1:+46299909 Msa0550760:intron
AATGACAAACTTGAGGTGTC+TGG 0.428444 4_1:+46304965 Msa0550760:three_prime_UTR
CCATTGGGAAGATAAGAAAA+TGG 0.430869 4_1:+46299731 Msa0550760:exon
GCAGAGCATACTGTATGGTT+TGG 0.432761 4_1:-46300790 None:intergenic
CTTGATGATAAATGGCTTGT+TGG 0.440900 4_1:+46302321 Msa0550760:CDS
TGCATATGGAACTGCATTGT+TGG 0.441013 4_1:+46304717 Msa0550760:CDS
TTTACAGCAGGTAGTGCATC+AGG 0.446244 4_1:-46300754 None:intergenic
CTGTATCTCGGGTTGGACTT+TGG 0.462776 4_1:+46300008 Msa0550760:CDS
TGTTATTGCACCAAGCAGAT+TGG 0.463073 4_1:+46300878 Msa0550760:CDS
GCCAAATCTGGATCTGCAAC+CGG 0.465717 4_1:-46302483 None:intergenic
GAATGGAGAGTCACATGATT+GGG 0.467158 4_1:+46300290 Msa0550760:intron
AACCAAACAGAAGCTGCATA+TGG 0.468872 4_1:+46304703 Msa0550760:CDS
CTCTATTAGATGCAATATCT+AGG 0.477068 4_1:-46304829 None:intergenic
GGAGTCCATTGCACGTATAG+AGG 0.485788 4_1:+46303890 Msa0550760:CDS
TATGGGTTGCTAAAGGATCT+AGG 0.488772 4_1:+46304577 Msa0550760:CDS
GCCACAAAAGCCAATCTGCT+TGG 0.490266 4_1:-46300888 None:intergenic
CAGGTGAAAGGCTGTATCTC+GGG 0.490454 4_1:+46299997 Msa0550760:CDS
AGAATGGAGAGTCACATGAT+TGG 0.492505 4_1:+46300289 Msa0550760:intron
CAACTCTCATTGTAAAGTAA+AGG 0.495280 4_1:-46300730 None:intergenic
ATGTATTTGCGAAGGTTAAG+TGG 0.497027 4_1:-46300357 None:intergenic
TTACCGTCCGTTATTGCACC+TGG 0.498572 4_1:+46301136 Msa0550760:CDS
TGGAGTTCCAGGTGCAATAA+CGG 0.499241 4_1:-46301143 None:intergenic
TGGCGCATTTGCCCTTAAGT+TGG 0.500171 4_1:-46304772 None:intergenic
TACTATCCTCTGCCAAAAGC+TGG 0.504038 4_1:+46302450 Msa0550760:CDS
GATGATAAATGGCTTGTTGG+TGG 0.509846 4_1:+46302324 Msa0550760:CDS
ACACAAGAATCGAGGATTCT+CGG 0.510380 4_1:+46302277 Msa0550760:CDS
ATTGCTCAAAATATTTGCAT+AGG 0.518697 4_1:-46304993 None:intergenic
GCAGGTGAAAGGCTGTATCT+CGG 0.519687 4_1:+46299996 Msa0550760:CDS
TTGACGTATAGTCGAAAACT+TGG 0.520917 4_1:+46299801 Msa0550760:CDS
GTTTGGTTTGCACGACTCAC+AGG 0.521003 4_1:-46304688 None:intergenic
ATGGTGGTAAAGTTGCGGAC+AGG 0.521903 4_1:-46299688 None:intergenic
ACTGCATTGTTGGCAATAAA+GGG 0.523185 4_1:+46304727 Msa0550760:CDS
TTTGCTATCATTGACATTGG+TGG 0.527618 4_1:+46300047 Msa0550760:CDS
TAAAATGGTGCTTGCTGGGT+GGG 0.528829 4_1:-46299772 None:intergenic
TCCAATTGCTTGTTTAAAGG+AGG 0.535092 4_1:+46301162 Msa0550760:CDS
TCTTACCTCTATACGTGCAA+TGG 0.535768 4_1:-46303895 None:intergenic
AAGATACGAGAAAGGGTGCT+TGG 0.539627 4_1:+46304661 Msa0550760:CDS
TGGTGGTAAAGTTGCGGACA+GGG 0.543063 4_1:-46299687 None:intergenic
AGATTATAATAATGCTCTGA+AGG 0.544841 4_1:+46300936 Msa0550760:CDS
GCAGCTCGTGCTACTCAACC+TGG 0.545958 4_1:+46301792 Msa0550760:CDS
GGTTGAGAGACTAGCCATGA+TGG 0.547884 4_1:-46301100 None:intergenic
CAGTTTCTCTAGTTGATCAT+CGG 0.550710 4_1:-46302388 None:intergenic
AAAGGGATATGGGTTGCTAA+AGG 0.551626 4_1:+46304570 Msa0550760:CDS
CAACAAGCCATTTATCATCA+AGG 0.552580 4_1:-46302320 None:intergenic
AGTGGACAAAGATACGAGAA+AGG 0.554823 4_1:+46304653 Msa0550760:CDS
GGTAAAGTTGCGGACAGGGA+GGG 0.555265 4_1:-46299683 None:intergenic
CGGATAGGGTCGCTTTGCCT+CGG 0.556796 4_1:-46300081 None:intergenic
TGATACCGAGTATAGCGGAT+AGG 0.556996 4_1:-46300096 None:intergenic
ATGTTAAAATGGTGCTTGCT+GGG 0.557496 4_1:-46299776 None:intergenic
CAGATCCAGATTTGGCTCCA+AGG 0.557605 4_1:+46302490 Msa0550760:CDS
GATACCGAGTATAGCGGATA+GGG 0.560278 4_1:-46300095 None:intergenic
AATGATGTTGAATACTTGCA+TGG 0.562603 4_1:+46303861 Msa0550760:CDS
AATCGAGGATTCTCGGTTTG+GGG 0.569766 4_1:+46302284 Msa0550760:CDS
CACATGATTGGGTACGCTCG+TGG 0.572462 4_1:+46300301 Msa0550760:CDS
AAGTGGACTCATATCCATCA+TGG 0.572768 4_1:+46301086 Msa0550760:CDS
AAGGAGTGTGTTGTATGCAC+CGG 0.573060 4_1:+46301741 Msa0550760:CDS
TTATCTTCCCAATGGATAAG+GGG 0.575519 4_1:-46299723 None:intergenic
TGAAAGGCTGTATCTCGGGT+TGG 0.578609 4_1:+46300001 Msa0550760:CDS
TGTATTTGCGAAGGTTAAGT+GGG 0.579701 4_1:-46300356 None:intergenic
TGATTGGGTACGCTCGTGGA+AGG 0.582998 4_1:+46300305 Msa0550760:CDS
CTCTGTGTAAGCTCGTGTCA+TGG 0.583558 4_1:+46300821 Msa0550760:CDS
TGGGAAGATAAGAAAATGGT+AGG 0.584118 4_1:+46299735 Msa0550760:exon
GAGCATACTGTATGGTTTGG+AGG 0.585331 4_1:-46300787 None:intergenic
TATCTTCCCAATGGATAAGG+GGG 0.585551 4_1:-46299722 None:intergenic
AGATTTGCTATCATTGACAT+TGG 0.585612 4_1:+46300044 Msa0550760:CDS
TGTATGGTTTGGAGGTGCAA+TGG 0.588665 4_1:-46300779 None:intergenic
TCGACACAATGTATTTGCGA+AGG 0.590674 4_1:-46300365 None:intergenic
GTAGTGTGGGAGCAGGTGAA+AGG 0.597368 4_1:+46299985 Msa0550760:CDS
GTCTAAGGAAGATATTTGTG+AGG 0.598899 4_1:-46302427 None:intergenic
TTAAAATGGTGCTTGCTGGG+TGG 0.598985 4_1:-46299773 None:intergenic
ACGATGCAGAGCATACTGTA+TGG 0.600239 4_1:-46300795 None:intergenic
AATGATAGCAAATCTTGCAC+CGG 0.609625 4_1:-46300036 None:intergenic
GCGACCCTATCCGCTATACT+CGG 0.613065 4_1:+46300091 Msa0550760:CDS
ATGTTGTACTGCAGTGACAC+AGG 0.614244 4_1:+46300691 Msa0550760:intron
TCTAAGGAAGATATTTGTGA+GGG 0.615510 4_1:-46302426 None:intergenic
GAACAATGGTGGTAAAGTTG+CGG 0.627822 4_1:-46299693 None:intergenic
ACCAAGAGTAAGTTAGAACA+AGG 0.627844 4_1:+46304930 Msa0550760:three_prime_UTR
AAACGCAGCTATACTGTCAG+TGG 0.632976 4_1:-46301766 None:intergenic
GTGACACAGGAGAACCGTTG+TGG 0.635099 4_1:+46300704 Msa0550760:intron
GTGTCATGGTGGAATCGTGA+TGG 0.637856 4_1:+46300835 Msa0550760:CDS
GAAAATGATACCGAGTATAG+CGG 0.639931 4_1:-46300101 None:intergenic
TGGTAAAGTTGCGGACAGGG+AGG 0.643374 4_1:-46299684 None:intergenic
TGGTGGCACAATTCAAGCCG+AGG 0.648456 4_1:+46300064 Msa0550760:CDS
GTGGACAAAGATACGAGAAA+GGG 0.650371 4_1:+46304654 Msa0550760:CDS
GTTCCAGGTGCAATAACGGA+CGG 0.663749 4_1:-46301139 None:intergenic
GGTTGGGTATGATCCTGAAG+TGG 0.669877 4_1:+46301069 Msa0550760:intron
ATTAAGCAACACAAGAATCG+AGG 0.670864 4_1:+46302269 Msa0550760:CDS
TAAAGTAAAGGTCTCCACAA+CGG 0.675201 4_1:-46300718 None:intergenic
TGTGTAAGCTCGTGTCATGG+TGG 0.682794 4_1:+46300824 Msa0550760:CDS
TGTGAAAACTTGATCTACTG+CGG 0.714232 4_1:-46304605 None:intergenic
GGTGGTGCTTCAAATACTGG+AGG 0.715567 4_1:+46302342 Msa0550760:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTTAAATTTGATTCTTTATA+TGG - chr4_1:46303663-46303682 None:intergenic 10.0%
!! CATGAATAAATAATTAAAGA+AGG - chr4_1:46301846-46301865 None:intergenic 15.0%
!!! AAATTAAGATTTTCAAAAGA+TGG + chr4_1:46301889-46301908 Msa0550760:intron 15.0%
!!! AGAGCATTTAAATTATATTT+TGG - chr4_1:46302047-46302066 None:intergenic 15.0%
!! TTTATAAAATTAACTCACTT+GGG + chr4_1:46302599-46302618 Msa0550760:intron 15.0%
!! AATAAAAAACTATTATTGAC+AGG - chr4_1:46302837-46302856 None:intergenic 15.0%
!!! AATAGTATTCTAAAAACAAA+AGG - chr4_1:46302860-46302879 None:intergenic 15.0%
!!! TTATTTTGCATAATAACTAA+TGG + chr4_1:46303800-46303819 Msa0550760:intron 15.0%
!!! AATTTTACTTCATATAATGA+TGG - chr4_1:46303945-46303964 None:intergenic 15.0%
!! AAAAATGGTGTAAAAATAAG+TGG - chr4_1:46299863-46299882 None:intergenic 20.0%
!!! TAATGTGATTGAGAATATTT+TGG + chr4_1:46300169-46300188 Msa0550760:intron 20.0%
!! TTGACATTGTTATAAAATTG+TGG + chr4_1:46300207-46300226 Msa0550760:intron 20.0%
!! AGTACAAAATATTGTCAAAT+TGG + chr4_1:46300544-46300563 Msa0550760:intron 20.0%
!! GTACAAAATATTGTCAAATT+GGG + chr4_1:46300545-46300564 Msa0550760:intron 20.0%
!! TACAAAATATTGTCAAATTG+GGG + chr4_1:46300546-46300565 Msa0550760:intron 20.0%
!!! TATTATCTATTTTTCTAGCT+AGG + chr4_1:46300981-46301000 Msa0550760:intron 20.0%
!! TGCAAAACATAAAAAAATTG+TGG - chr4_1:46301049-46301068 None:intergenic 20.0%
!!! ACAATTTTTTTATGTTTTGC+AGG + chr4_1:46301048-46301067 Msa0550760:intron 20.0%
!! GAGGAACTTAAAAATAAATT+TGG + chr4_1:46301181-46301200 Msa0550760:CDS 20.0%
!! TAAAAAGTTTATATGTGAGT+TGG - chr4_1:46301368-46301387 None:intergenic 20.0%
!! TTATTTATTCATGATCTGTT+AGG + chr4_1:46301853-46301872 Msa0550760:intron 20.0%
!! ATCTTATTATAAATACAGTG+TGG - chr4_1:46301951-46301970 None:intergenic 20.0%
!! AATATAATTTAAATGCTCTG+TGG + chr4_1:46302048-46302067 Msa0550760:intron 20.0%
!! CTTATTAATTCAAAACCTTA+AGG + chr4_1:46302134-46302153 Msa0550760:intron 20.0%
!! TATACAAGCTAATGTTATAA+GGG - chr4_1:46302573-46302592 None:intergenic 20.0%
!!! GTGAGTTAATTTTATAAAGA+AGG - chr4_1:46302597-46302616 None:intergenic 20.0%
!! CTTTATAAAATTAACTCACT+TGG + chr4_1:46302598-46302617 Msa0550760:intron 20.0%
!!! TTAGAATACTATTTTTTCTC+TGG + chr4_1:46302867-46302886 Msa0550760:intron 20.0%
!!! CTACTACTATTTTAGAATTT+AGG + chr4_1:46303088-46303107 Msa0550760:intron 20.0%
!! CAAGAACAAATTTGAATATA+CGG - chr4_1:46303244-46303263 None:intergenic 20.0%
!! AATAAATATACTCCAATGTA+AGG - chr4_1:46303467-46303486 None:intergenic 20.0%
!! TACATTGGAGTATATTTATT+AGG + chr4_1:46303467-46303486 Msa0550760:intron 20.0%
!!! GACATTTTTTATTTCCTTTT+GGG - chr4_1:46303551-46303570 None:intergenic 20.0%
!! TCCAATAAAGTTTATGAAAA+TGG - chr4_1:46304166-46304185 None:intergenic 20.0%
!! TAATTTATGTGAGACTATTT+GGG - chr4_1:46304247-46304266 None:intergenic 20.0%
!! ATAATTTATGTGAGACTATT+TGG - chr4_1:46304248-46304267 None:intergenic 20.0%
!!! TGAGTTGAACAATAAATTTA+AGG - chr4_1:46304351-46304370 None:intergenic 20.0%
!!! TTCTTGAAATATGGTATTTT+AGG + chr4_1:46304546-46304565 Msa0550760:intron 20.0%
! ATACGTCAAAGATGTTAAAA+TGG - chr4_1:46299790-46299809 None:intergenic 25.0%
!! GTAGCATGAAAGTATAAAAA+TGG - chr4_1:46299878-46299897 None:intergenic 25.0%
! AGATAACAAAAAAAGTAGTG+TGG + chr4_1:46299971-46299990 Msa0550760:CDS 25.0%
! GATAACAAAAAAAGTAGTGT+GGG + chr4_1:46299972-46299991 Msa0550760:CDS 25.0%
!! ATTGTATTTGAATTCTGAAG+TGG + chr4_1:46300666-46300685 Msa0550760:intron 25.0%
!!! TTGTATTTGAATTCTGAAGT+GGG + chr4_1:46300667-46300686 Msa0550760:intron 25.0%
! AGATTATAATAATGCTCTGA+AGG + chr4_1:46300936-46300955 Msa0550760:CDS 25.0%
!!! TTTTTTTATGTTTTGCAGGT+TGG + chr4_1:46301052-46301071 Msa0550760:intron 25.0%
!!! TTTTTTATGTTTTGCAGGTT+GGG + chr4_1:46301053-46301072 Msa0550760:intron 25.0%
! AAGCATTATCCCTATAAAAT+GGG - chr4_1:46301437-46301456 None:intergenic 25.0%
! TAAGCATTATCCCTATAAAA+TGG - chr4_1:46301438-46301457 None:intergenic 25.0%
! AGGGATAATGCTTATTAATA+TGG + chr4_1:46301444-46301463 Msa0550760:intron 25.0%
! GAAAGAAGAATATTGAGATA+AGG - chr4_1:46301501-46301520 None:intergenic 25.0%
! TCTCAATATTCTTCTTTCTT+TGG + chr4_1:46301503-46301522 Msa0550760:intron 25.0%
!!! CAAAGATTTTAACCAAGTTA+AGG - chr4_1:46301668-46301687 None:intergenic 25.0%
! CCATAGCAATCATATATATT+AGG - chr4_1:46301990-46302009 None:intergenic 25.0%
! CCTAATATATATGATTGCTA+TGG + chr4_1:46301987-46302006 Msa0550760:intron 25.0%
!!! AAATTATATTTTGGTAGACC+AGG - chr4_1:46302038-46302057 None:intergenic 25.0%
! ACATTATGAGAAACAAAACA+AGG - chr4_1:46302203-46302222 None:intergenic 25.0%
! TCTCATAATGTTTGATTCTT+AGG + chr4_1:46302212-46302231 Msa0550760:intron 25.0%
! CTATACAAGCTAATGTTATA+AGG - chr4_1:46302574-46302593 None:intergenic 25.0%
!!! TTTTTTTAAAACTCGGTATC+CGG - chr4_1:46302766-46302785 None:intergenic 25.0%
! ATCTACAAATCATCATGTTA+AGG + chr4_1:46302901-46302920 Msa0550760:intron 25.0%
!! CAATGCTTAGTTTAGAATTT+GGG + chr4_1:46303012-46303031 Msa0550760:intron 25.0%
!! ATTCAAATTTGTTCTTGATG+AGG + chr4_1:46303247-46303266 Msa0550760:intron 25.0%
! AGTATTTCTTAATTACCTAG+CGG - chr4_1:46303366-46303385 None:intergenic 25.0%
! GAAATCTTCAACAAAAGAAA+AGG + chr4_1:46303388-46303407 Msa0550760:intron 25.0%
! AGAAAAGGACAGTATTTATT+AGG + chr4_1:46303403-46303422 Msa0550760:intron 25.0%
!!! TTAGGAGCTTTTAAAATCAT+TGG + chr4_1:46303421-46303440 Msa0550760:intron 25.0%
!! ATTTATTAGGAGCTTTAACA+AGG + chr4_1:46303480-46303499 Msa0550760:intron 25.0%
!!! GGACATTTTTTATTTCCTTT+TGG - chr4_1:46303552-46303571 None:intergenic 25.0%
! GAAATAAAAAATGTCCCAAA+AGG + chr4_1:46303556-46303575 Msa0550760:intron 25.0%
!! AAATGTCAAATAGTCCTTTT+GGG - chr4_1:46303573-46303592 None:intergenic 25.0%
!! ATTTTCTTCTTCCAAAAACT+GGG - chr4_1:46303628-46303647 None:intergenic 25.0%
! AAAATAAAAAGAGTCTTGGT+TGG - chr4_1:46303787-46303806 None:intergenic 25.0%
! ATGCAAAATAAAAAGAGTCT+TGG - chr4_1:46303791-46303810 None:intergenic 25.0%
!!! ACTAATGGAATTTGATTTTC+TGG + chr4_1:46303815-46303834 Msa0550760:intron 25.0%
!!! CTAATGGAATTTGATTTTCT+GGG + chr4_1:46303816-46303835 Msa0550760:intron 25.0%
!! AAGTATTCAACATCATTTTC+TGG - chr4_1:46303858-46303877 None:intergenic 25.0%
!!! GCCATTTTCATAAACTTTAT+TGG + chr4_1:46304162-46304181 Msa0550760:intron 25.0%
!!! TGTTTTCAGCTTATTTTCAT+TGG - chr4_1:46304192-46304211 None:intergenic 25.0%
! GAACTTATGAAAACAACTTA+TGG - chr4_1:46304223-46304242 None:intergenic 25.0%
! TCAAATAAGTCAATCTAAAC+AGG + chr4_1:46304277-46304296 Msa0550760:intron 25.0%
! ACTCCAAATTCTAACTTTAT+GGG - chr4_1:46304303-46304322 None:intergenic 25.0%
! AACTCCAAATTCTAACTTTA+TGG - chr4_1:46304304-46304323 None:intergenic 25.0%
! AGCTGTAAAAAAAAAAGAGT+TGG - chr4_1:46304460-46304479 None:intergenic 25.0%
!!! AAATATGGTATTTTAGGCAA+AGG + chr4_1:46304552-46304571 Msa0550760:intron 25.0%
!!! AATATGGTATTTTAGGCAAA+GGG + chr4_1:46304553-46304572 Msa0550760:intron 25.0%
!! AATATTTTGTGACCAACTTA+AGG + chr4_1:46304760-46304779 Msa0550760:exon 25.0%
!! ATATTTTGTGACCAACTTAA+GGG + chr4_1:46304761-46304780 Msa0550760:exon 25.0%
! AGTAGTAACAAAAATTAGGA+TGG + chr4_1:46304802-46304821 Msa0550760:three_prime_UTR 25.0%
! AGTCAAGTTTCTATGTTATT+TGG + chr4_1:46304870-46304889 Msa0550760:three_prime_UTR 25.0%
! ATTCAAAAATGACAAACTTG+AGG + chr4_1:46304958-46304977 Msa0550760:three_prime_UTR 25.0%
!!! TTCATGCTACTTTTCTTATC+AGG + chr4_1:46299888-46299907 Msa0550760:intron 30.0%
! TACTTTTCTTATCAGGAAAC+AGG + chr4_1:46299895-46299914 Msa0550760:intron 30.0%
GTATCAATGTCTCTCAAAAA+CGG + chr4_1:46299948-46299967 Msa0550760:CDS 30.0%
!! AGATTTGCTATCATTGACAT+TGG + chr4_1:46300044-46300063 Msa0550760:CDS 30.0%
ACAAAAATCTCAGCATACTT+TGG - chr4_1:46300254-46300273 None:intergenic 30.0%
TTTCTCTTGTCTAGAAAGAA+TGG + chr4_1:46300273-46300292 Msa0550760:intron 30.0%
!! ATTGTGTCGATTTCTATTGA+TGG + chr4_1:46300378-46300397 Msa0550760:CDS 30.0%
CAACTACTATCATTGTTGAT+AGG + chr4_1:46300409-46300428 Msa0550760:CDS 30.0%
! GAATCAGTGTTGTTAAATAG+TGG + chr4_1:46300457-46300476 Msa0550760:intron 30.0%
CAACTCTCATTGTAAAGTAA+AGG - chr4_1:46300733-46300752 None:intergenic 30.0%
! TGTGGATAAATTTTCCAACT+CGG - chr4_1:46301031-46301050 None:intergenic 30.0%
AACTCCAATTGCTTGTTTAA+AGG + chr4_1:46301159-46301178 Msa0550760:CDS 30.0%
GCTTAATATAGTTGTTTGGA+AGG - chr4_1:46301293-46301312 None:intergenic 30.0%
TGGTGCTTAATATAGTTGTT+TGG - chr4_1:46301297-46301316 None:intergenic 30.0%
AACAACTATATTAAGCACCA+CGG + chr4_1:46301297-46301316 Msa0550760:intron 30.0%
! TTTATATGTGAGTTGGCTAT+CGG - chr4_1:46301361-46301380 None:intergenic 30.0%
AGCATTATCCCTATAAAATG+GGG - chr4_1:46301436-46301455 None:intergenic 30.0%
TAAGGTTGCACTATTCAAAT+TGG - chr4_1:46301483-46301502 None:intergenic 30.0%
! TTGTGCATCAATTTTACTTG+TGG - chr4_1:46301589-46301608 None:intergenic 30.0%
TATATATTGCTGTGTTGCAA+TGG + chr4_1:46301631-46301650 Msa0550760:intron 30.0%
!!! TATCCTTTCAGGTTTTCAAA+AGG + chr4_1:46301722-46301741 Msa0550760:intron 30.0%
!! TAAATACAGTGTGGTGTTAT+AGG - chr4_1:46301942-46301961 None:intergenic 30.0%
AATTAATAAGCACCAACCAT+GGG - chr4_1:46302124-46302143 None:intergenic 30.0%
TGATTCTTAGGTTACATCAT+TGG + chr4_1:46302224-46302243 Msa0550760:intron 30.0%
GATTCTTAGGTTACATCATT+GGG + chr4_1:46302225-46302244 Msa0550760:intron 30.0%
TCTAAGGAAGATATTTGTGA+GGG - chr4_1:46302429-46302448 None:intergenic 30.0%
TAAAATTAACTCACTTGGGT+TGG + chr4_1:46302603-46302622 Msa0550760:intron 30.0%
CTTCATGATTTCAACAATGT+GGG - chr4_1:46302968-46302987 None:intergenic 30.0%
ACTTCATGATTTCAACAATG+TGG - chr4_1:46302969-46302988 None:intergenic 30.0%
CCAAATTCTAAACTAAGCAT+TGG - chr4_1:46303014-46303033 None:intergenic 30.0%
! CCAATGCTTAGTTTAGAATT+TGG + chr4_1:46303011-46303030 Msa0550760:intron 30.0%
!! CTTATCAGTCAGTTTTGTAA+GGG - chr4_1:46303129-46303148 None:intergenic 30.0%
!! TCTTATCAGTCAGTTTTGTA+AGG - chr4_1:46303130-46303149 None:intergenic 30.0%
CTCACTTATAAACACATTGT+TGG + chr4_1:46303161-46303180 Msa0550760:intron 30.0%
GGATTATATATCTACCAATG+TGG + chr4_1:46303182-46303201 Msa0550760:intron 30.0%
AAGTGTTAAAAGTTCCACAT+TGG - chr4_1:46303199-46303218 None:intergenic 30.0%
! GAAATGTCAAATAGTCCTTT+TGG - chr4_1:46303574-46303593 None:intergenic 30.0%
TTTCCTTGTCTTTAGTACTT+AGG + chr4_1:46303590-46303609 Msa0550760:intron 30.0%
TTCCTTGTCTTTAGTACTTA+GGG + chr4_1:46303591-46303610 Msa0550760:intron 30.0%
! CATTTTCTTCTTCCAAAAAC+TGG - chr4_1:46303629-46303648 None:intergenic 30.0%
AAGTTGCTTCATTTATGTTC+AGG + chr4_1:46303681-46303700 Msa0550760:intron 30.0%
AGTTGCTTCATTTATGTTCA+GGG + chr4_1:46303682-46303701 Msa0550760:intron 30.0%
ACAGATAACAGTACCAAATT+TGG - chr4_1:46303714-46303733 None:intergenic 30.0%
! AGTTTGCTTTGATTGTGTTA+TGG - chr4_1:46303746-46303765 None:intergenic 30.0%
AATGATGTTGAATACTTGCA+TGG + chr4_1:46303861-46303880 Msa0550760:CDS 30.0%
! TGAATACTTGCATGGAATTT+TGG + chr4_1:46303869-46303888 Msa0550760:CDS 30.0%
!! ATTGATTTTGTTCCAAGAAC+TGG + chr4_1:46303996-46304015 Msa0550760:intron 30.0%
TTAAGTTAGAAACCAGTTCT+TGG - chr4_1:46304011-46304030 None:intergenic 30.0%
! AAGAACTGGTTTCTAACTTA+AGG + chr4_1:46304010-46304029 Msa0550760:intron 30.0%
TTCTAACTTAAGGCTATGTT+TGG + chr4_1:46304020-46304039 Msa0550760:intron 30.0%
!! TATTTTAGGCAAAGGGATAT+GGG + chr4_1:46304560-46304579 Msa0550760:intron 30.0%
TCGCAGTAGTAACAAAAATT+AGG + chr4_1:46304798-46304817 Msa0550760:three_prime_UTR 30.0%
CTCTATTAGATGCAATATCT+AGG - chr4_1:46304832-46304851 None:intergenic 30.0%
TTATCTTCCCAATGGATAAG+GGG - chr4_1:46299726-46299745 None:intergenic 35.0%
CTTATCTTCCCAATGGATAA+GGG - chr4_1:46299727-46299746 None:intergenic 35.0%
TCTTATCTTCCCAATGGATA+AGG - chr4_1:46299728-46299747 None:intergenic 35.0%
! CCATTTTCTTATCTTCCCAA+TGG - chr4_1:46299734-46299753 None:intergenic 35.0%
CCATTGGGAAGATAAGAAAA+TGG + chr4_1:46299731-46299750 Msa0550760:exon 35.0%
TGGGAAGATAAGAAAATGGT+AGG + chr4_1:46299735-46299754 Msa0550760:exon 35.0%
ATGTTAAAATGGTGCTTGCT+GGG - chr4_1:46299779-46299798 None:intergenic 35.0%
TTGACGTATAGTCGAAAACT+TGG + chr4_1:46299801-46299820 Msa0550760:CDS 35.0%
GGAAACAGGTTATTACTGTT+AGG + chr4_1:46299909-46299928 Msa0550760:intron 35.0%
AGAGACATTGATACTGTTCT+TGG - chr4_1:46299942-46299961 None:intergenic 35.0%
AATGATAGCAAATCTTGCAC+CGG - chr4_1:46300039-46300058 None:intergenic 35.0%
! TTTGCTATCATTGACATTGG+TGG + chr4_1:46300047-46300066 Msa0550760:CDS 35.0%
GAAAATGATACCGAGTATAG+CGG - chr4_1:46300104-46300123 None:intergenic 35.0%
!!! GAGACACTTTTTTTGTTGCT+TGG + chr4_1:46300327-46300346 Msa0550760:CDS 35.0%
TGTATTTGCGAAGGTTAAGT+GGG - chr4_1:46300359-46300378 None:intergenic 35.0%
ATGTATTTGCGAAGGTTAAG+TGG - chr4_1:46300360-46300379 None:intergenic 35.0%
! GTGTTGTTAAATAGTGGCTA+TGG + chr4_1:46300463-46300482 Msa0550760:intron 35.0%
TAAAGTAAAGGTCTCCACAA+CGG - chr4_1:46300721-46300740 None:intergenic 35.0%
GACGGTAAAAGATGAGAATA+TGG - chr4_1:46301124-46301143 None:intergenic 35.0%
TCCAATTGCTTGTTTAAAGG+AGG + chr4_1:46301162-46301181 Msa0550760:CDS 35.0%
TCCTCCTTTAAACAAGCAAT+TGG - chr4_1:46301166-46301185 None:intergenic 35.0%
! TTATATGTGAGTTGGCTATC+GGG - chr4_1:46301360-46301379 None:intergenic 35.0%
! AAGTTCCAACCCCATTTTAT+AGG + chr4_1:46301424-46301443 Msa0550760:intron 35.0%
! AGTTCCAACCCCATTTTATA+GGG + chr4_1:46301425-46301444 Msa0550760:intron 35.0%
TTATCCCTATAAAATGGGGT+TGG - chr4_1:46301432-46301451 None:intergenic 35.0%
! AATTTTACTTGTGGCACAAC+TGG - chr4_1:46301580-46301599 None:intergenic 35.0%
! GCATTGGATTTTCCTTAACT+TGG + chr4_1:46301653-46301672 Msa0550760:intron 35.0%
!! ACTCCTTTTGAAAACCTGAA+AGG - chr4_1:46301728-46301747 None:intergenic 35.0%
! CAAGAAATTACAGCTTTTCC+AGG - chr4_1:46301813-46301832 None:intergenic 35.0%
GGATGCATTTAAATACAGTG+TGG - chr4_1:46302017-46302036 None:intergenic 35.0%
CACTGTATTTAAATGCATCC+TGG + chr4_1:46302017-46302036 Msa0550760:intron 35.0%
GATAAGCTTTGCAGCTATAT+AGG + chr4_1:46302084-46302103 Msa0550760:intron 35.0%
GAATTAATAAGCACCAACCA+TGG - chr4_1:46302125-46302144 None:intergenic 35.0%
GCATAAAAAGCTATCCACAA+TGG - chr4_1:46302181-46302200 None:intergenic 35.0%
ATTAAGCAACACAAGAATCG+AGG + chr4_1:46302269-46302288 Msa0550760:CDS 35.0%
CAACAAGCCATTTATCATCA+AGG - chr4_1:46302323-46302342 None:intergenic 35.0%
! CTTGATGATAAATGGCTTGT+TGG + chr4_1:46302321-46302340 Msa0550760:CDS 35.0%
CAGTTTCTCTAGTTGATCAT+CGG - chr4_1:46302391-46302410 None:intergenic 35.0%
GTCTAAGGAAGATATTTGTG+AGG - chr4_1:46302430-46302449 None:intergenic 35.0%
AAAAGCTGGTGAAAGATTTC+CGG + chr4_1:46302464-46302483 Msa0550760:CDS 35.0%
ATCTCACGTTATATTCTCCT+TGG + chr4_1:46302664-46302683 Msa0550760:intron 35.0%
GACAGGATTTCAACTTCATT+TGG - chr4_1:46302820-46302839 None:intergenic 35.0%
CAATGTGGGAAATTATGCTT+TGG - chr4_1:46302954-46302973 None:intergenic 35.0%
! TTGGCTATTTCAACAATGTG+AGG - chr4_1:46302995-46303014 None:intergenic 35.0%
! GCTTAGTTTAGAATTTGGGT+TGG + chr4_1:46303016-46303035 Msa0550760:intron 35.0%
ACAACAAGATGTCCAGAATT+GGG - chr4_1:46303061-46303080 None:intergenic 35.0%
TACAACAAGATGTCCAGAAT+TGG - chr4_1:46303062-46303081 None:intergenic 35.0%
! TTCTGGACATCTTGTTGTAT+AGG + chr4_1:46303063-46303082 Msa0550760:intron 35.0%
CAAAACTGACTGATAAGATG+AGG + chr4_1:46303132-46303151 Msa0550760:intron 35.0%
! TTGTTCACTGTTTCTTGAGA+AGG + chr4_1:46303338-46303357 Msa0550760:intron 35.0%
! TCATTGGAGTACTTCTCATT+TGG + chr4_1:46303437-46303456 Msa0550760:intron 35.0%
TCATTTGGCATTCCTTACAT+TGG + chr4_1:46303452-46303471 Msa0550760:intron 35.0%
TCCTTAACAAGTATCCCAAA+AGG + chr4_1:46303534-46303553 Msa0550760:intron 35.0%
!!! TCCTTTTGGGATACTTGTTA+AGG - chr4_1:46303538-46303557 None:intergenic 35.0%
ATCCCTAAGTACTAAAGACA+AGG - chr4_1:46303596-46303615 None:intergenic 35.0%
TTGCTTTGATTGTGTTATGG+TGG - chr4_1:46303743-46303762 None:intergenic 35.0%
AGGCCCATAAAGTTAGAATT+TGG + chr4_1:46304297-46304316 Msa0550760:intron 35.0%
!! AGGCTTTTAACTAACTGTGA+AGG - chr4_1:46304331-46304350 None:intergenic 35.0%
ATTCATCCACTAGATCCTAA+TGG + chr4_1:46304517-46304536 Msa0550760:intron 35.0%
TTCATCCACTAGATCCTAAT+GGG + chr4_1:46304518-46304537 Msa0550760:intron 35.0%
TTTCAAGAATGCTTCCCATT+AGG - chr4_1:46304535-46304554 None:intergenic 35.0%
!! TGGGAAGCATTCTTGAAATA+TGG + chr4_1:46304537-46304556 Msa0550760:intron 35.0%
!! GTATTTTAGGCAAAGGGATA+TGG + chr4_1:46304559-46304578 Msa0550760:intron 35.0%
TGTGAAAACTTGATCTACTG+CGG - chr4_1:46304608-46304627 None:intergenic 35.0%
AACTGCATTGTTGGCAATAA+AGG + chr4_1:46304726-46304745 Msa0550760:CDS 35.0%
ACTGCATTGTTGGCAATAAA+GGG + chr4_1:46304727-46304746 Msa0550760:CDS 35.0%
! TTTTGTTACTACTGCGACAA+TGG - chr4_1:46304795-46304814 None:intergenic 35.0%
ACCAAGAGTAAGTTAGAACA+AGG + chr4_1:46304930-46304949 Msa0550760:three_prime_UTR 35.0%
TCCTTGTTCTAACTTACTCT+TGG - chr4_1:46304934-46304953 None:intergenic 35.0%
GAACAATGGTGGTAAAGTTG+CGG - chr4_1:46299696-46299715 None:intergenic 40.0%
!!! TAAGGGGGTTTTAGGAACAA+TGG - chr4_1:46299710-46299729 None:intergenic 40.0%
CTAAAACCCCCTTATCCATT+GGG + chr4_1:46299716-46299735 Msa0550760:five_prime_UTR 40.0%
TATCTTCCCAATGGATAAGG+GGG - chr4_1:46299725-46299744 None:intergenic 40.0%
GATGTTAAAATGGTGCTTGC+TGG - chr4_1:46299780-46299799 None:intergenic 40.0%
AAAAAAAGTAGTGTGGGAGC+AGG + chr4_1:46299978-46299997 Msa0550760:CDS 40.0%
AGAATGGAGAGTCACATGAT+TGG + chr4_1:46300289-46300308 Msa0550760:intron 40.0%
GAATGGAGAGTCACATGATT+GGG + chr4_1:46300290-46300309 Msa0550760:intron 40.0%
TCGACACAATGTATTTGCGA+AGG - chr4_1:46300368-46300387 None:intergenic 40.0%
TGTTATTGCACCAAGCAGAT+TGG + chr4_1:46300878-46300897 Msa0550760:CDS 40.0%
! AAGTGGACTCATATCCATCA+TGG + chr4_1:46301086-46301105 Msa0550760:CDS 40.0%
AAACAAGCAATTGGAGTTCC+AGG - chr4_1:46301157-46301176 None:intergenic 40.0%
ATCTGTACCAAGCAACACTT+TGG + chr4_1:46301243-46301262 Msa0550760:intron 40.0%
TCTGTACCAAGCAACACTTT+GGG + chr4_1:46301244-46301263 Msa0550760:intron 40.0%
!! TATTACCCCAAAGTGTTGCT+TGG - chr4_1:46301253-46301272 None:intergenic 40.0%
! TATATGTGAGTTGGCTATCG+GGG - chr4_1:46301359-46301378 None:intergenic 40.0%
GCACAAGTAACACAACTTTC+TGG + chr4_1:46301603-46301622 Msa0550760:intron 40.0%
TACACAGTGCATATCCTTTC+AGG + chr4_1:46301711-46301730 Msa0550760:intron 40.0%
CCACAATGGTGAATCTAAAG+AGG - chr4_1:46302167-46302186 None:intergenic 40.0%
CCTCTTTAGATTCACCATTG+TGG + chr4_1:46302164-46302183 Msa0550760:intron 40.0%
ACACAAGAATCGAGGATTCT+CGG + chr4_1:46302277-46302296 Msa0550760:CDS 40.0%
! GTCATCGCCTTGATGATAAA+TGG + chr4_1:46302313-46302332 Msa0550760:CDS 40.0%
!! GATGATAAATGGCTTGTTGG+TGG + chr4_1:46302324-46302343 Msa0550760:CDS 40.0%
! GGAAATCTTTCACCAGCTTT+TGG - chr4_1:46302465-46302484 None:intergenic 40.0%
AATGGATCCATTCAGTACCT+TGG - chr4_1:46302510-46302529 None:intergenic 40.0%
ATATAACGTGAGATGTCGAG+AGG - chr4_1:46302658-46302677 None:intergenic 40.0%
!! ATTGGATCCCTTGGATTAGT+CGG + chr4_1:46302733-46302752 Msa0550760:intron 40.0%
CTTAAGACCGACTAATCCAA+GGG - chr4_1:46302743-46302762 None:intergenic 40.0%
TGTGGGAAATTATGCTTTGG+AGG - chr4_1:46302951-46302970 None:intergenic 40.0%
ATGTCCAGAATTGGGCATAA+GGG - chr4_1:46303053-46303072 None:intergenic 40.0%
ATTTCGATAGAACACCTGAC+TGG + chr4_1:46303305-46303324 Msa0550760:intron 40.0%
AACACCTGACTGGCAATATT+AGG + chr4_1:46303315-46303334 Msa0550760:intron 40.0%
ACAACCTAATATTGCCAGTC+AGG - chr4_1:46303322-46303341 None:intergenic 40.0%
! TTAGGAGCTTTAACAAGGAC+AGG + chr4_1:46303485-46303504 Msa0550760:intron 40.0%
! ATGATGACTGACCCAGTTTT+TGG + chr4_1:46303614-46303633 Msa0550760:intron 40.0%
TTCAGGGACAAAGCCAAATT+TGG + chr4_1:46303698-46303717 Msa0550760:intron 40.0%
!! TGGAATTTGATTTTCTGGGC+AGG + chr4_1:46303820-46303839 Msa0550760:intron 40.0%
! TCAACATCATTTTCTGGACG+TGG - chr4_1:46303852-46303871 None:intergenic 40.0%
TCTTACCTCTATACGTGCAA+TGG - chr4_1:46303898-46303917 None:intergenic 40.0%
! AAAGGGATATGGGTTGCTAA+AGG + chr4_1:46304570-46304589 Msa0550760:CDS 40.0%
! TATGGGTTGCTAAAGGATCT+AGG + chr4_1:46304577-46304596 Msa0550760:CDS 40.0%
! GTAGATCAAGTTTTCACAGC+CGG + chr4_1:46304610-46304629 Msa0550760:CDS 40.0%
AGTGGACAAAGATACGAGAA+AGG + chr4_1:46304653-46304672 Msa0550760:CDS 40.0%
GTGGACAAAGATACGAGAAA+GGG + chr4_1:46304654-46304673 Msa0550760:CDS 40.0%
AACCAAACAGAAGCTGCATA+TGG + chr4_1:46304703-46304722 Msa0550760:CDS 40.0%
TTCCATATGCAGCTTCTGTT+TGG - chr4_1:46304708-46304727 None:intergenic 40.0%
TGCATATGGAACTGCATTGT+TGG + chr4_1:46304717-46304736 Msa0550760:CDS 40.0%
! AATGACAAACTTGAGGTGTC+TGG + chr4_1:46304965-46304984 Msa0550760:three_prime_UTR 40.0%
GGACAGGGAGGGAAAAAAAA+GGG - chr4_1:46299675-46299694 None:intergenic 45.0%
! CCAATGGATAAGGGGGTTTT+AGG - chr4_1:46299718-46299737 None:intergenic 45.0%
CCTAAAACCCCCTTATCCAT+TGG + chr4_1:46299715-46299734 Msa0550760:five_prime_UTR 45.0%
! TAAAATGGTGCTTGCTGGGT+GGG - chr4_1:46299775-46299794 None:intergenic 45.0%
! TTAAAATGGTGCTTGCTGGG+TGG - chr4_1:46299776-46299795 None:intergenic 45.0%
!! GATACCGAGTATAGCGGATA+GGG - chr4_1:46300098-46300117 None:intergenic 45.0%
!! TGATACCGAGTATAGCGGAT+AGG - chr4_1:46300099-46300118 None:intergenic 45.0%
ATGTTGTACTGCAGTGACAC+AGG + chr4_1:46300691-46300710 Msa0550760:intron 45.0%
TTTACAGCAGGTAGTGCATC+AGG - chr4_1:46300757-46300776 None:intergenic 45.0%
!! GGTGCAATGGATTTTACAGC+AGG - chr4_1:46300769-46300788 None:intergenic 45.0%
! TGTATGGTTTGGAGGTGCAA+TGG - chr4_1:46300782-46300801 None:intergenic 45.0%
! GAGCATACTGTATGGTTTGG+AGG - chr4_1:46300790-46300809 None:intergenic 45.0%
GCAGAGCATACTGTATGGTT+TGG - chr4_1:46300793-46300812 None:intergenic 45.0%
ACGATGCAGAGCATACTGTA+TGG - chr4_1:46300798-46300817 None:intergenic 45.0%
!!! ACCAAGCAGATTGGCTTTTG+TGG + chr4_1:46300887-46300906 Msa0550760:CDS 45.0%
! TGGCTTTTGTGGCTTCTTCA+TGG + chr4_1:46300898-46300917 Msa0550760:CDS 45.0%
TGGCTTCTTCATGGAAAGCT+TGG + chr4_1:46300907-46300926 Msa0550760:CDS 45.0%
GATGGATATGAGTCCACTTC+AGG - chr4_1:46301085-46301104 None:intergenic 45.0%
TGGAGTTCCAGGTGCAATAA+CGG - chr4_1:46301146-46301165 None:intergenic 45.0%
CTGTACCAAGCAACACTTTG+GGG + chr4_1:46301245-46301264 Msa0550760:intron 45.0%
TCAAGTCTCAACGCTCAAGA+AGG - chr4_1:46301536-46301555 None:intergenic 45.0%
CTTGTGGCACAACTGGAATT+TGG - chr4_1:46301573-46301592 None:intergenic 45.0%
TTGCTGTGTTGCAATGGCAT+TGG + chr4_1:46301637-46301656 Msa0550760:intron 45.0%
! AAGGAGTGTGTTGTATGCAC+CGG + chr4_1:46301741-46301760 Msa0550760:CDS 45.0%
AGCTATACTGTCAGTGGTTC+CGG - chr4_1:46301763-46301782 None:intergenic 45.0%
AAACGCAGCTATACTGTCAG+TGG - chr4_1:46301769-46301788 None:intergenic 45.0%
AATGCTCTGTGGTCTTCTCA+TGG + chr4_1:46302059-46302078 Msa0550760:intron 45.0%
ATGCTCTGTGGTCTTCTCAT+GGG + chr4_1:46302060-46302079 Msa0550760:intron 45.0%
!! TAAAGAGGTGCTTGGCCTTA+AGG - chr4_1:46302152-46302171 None:intergenic 45.0%
!! GGTGAATCTAAAGAGGTGCT+TGG - chr4_1:46302160-46302179 None:intergenic 45.0%
AGAATCGAGGATTCTCGGTT+TGG + chr4_1:46302282-46302301 Msa0550760:CDS 45.0%
GAATCGAGGATTCTCGGTTT+GGG + chr4_1:46302283-46302302 Msa0550760:CDS 45.0%
! AATCGAGGATTCTCGGTTTG+GGG + chr4_1:46302284-46302303 Msa0550760:CDS 45.0%
!! GTTGGTGGTGCTTCAAATAC+TGG + chr4_1:46302339-46302358 Msa0550760:CDS 45.0%
TGGCAGAGGATAGTAGTCTA+AGG - chr4_1:46302445-46302464 None:intergenic 45.0%
TACTATCCTCTGCCAAAAGC+TGG + chr4_1:46302450-46302469 Msa0550760:CDS 45.0%
!! TTTGGCTCCAAGGTACTGAA+TGG + chr4_1:46302500-46302519 Msa0550760:intron 45.0%
! GGATCCATTTTGCTCTCTGT+TGG + chr4_1:46302521-46302540 Msa0550760:intron 45.0%
CGTTCCAACAGAGAGCAAAA+TGG - chr4_1:46302528-46302547 None:intergenic 45.0%
!! TCCTTGGTGCCAATTTCGTT+GGG + chr4_1:46302680-46302699 Msa0550760:intron 45.0%
!! ATGGACTAGCCCAACGAAAT+TGG - chr4_1:46302692-46302711 None:intergenic 45.0%
ATAACCTGCAAGTGGACGAT+GGG + chr4_1:46302710-46302729 Msa0550760:intron 45.0%
GCTTAAGACCGACTAATCCA+AGG - chr4_1:46302744-46302763 None:intergenic 45.0%
!! TGGATTAGTCGGTCTTAAGC+CGG + chr4_1:46302744-46302763 Msa0550760:intron 45.0%
TCAACCCTTATGCCCAATTC+TGG + chr4_1:46303046-46303065 Msa0550760:intron 45.0%
GATGTCCAGAATTGGGCATA+AGG - chr4_1:46303054-46303073 None:intergenic 45.0%
TGCTTCCCATTAGGATCTAG+TGG - chr4_1:46304526-46304545 None:intergenic 45.0%
GAGGAGCGAAAAATGAGAAG+TGG + chr4_1:46304635-46304654 Msa0550760:CDS 45.0%
!! AAGATACGAGAAAGGGTGCT+TGG + chr4_1:46304661-46304680 Msa0550760:CDS 45.0%
!!! AATTATTTTTTTTTAAAACT+CGG - chr4_1:46302773-46302792 None:intergenic 5.0%
CGGACAGGGAGGGAAAAAAA+AGG - chr4_1:46299676-46299695 None:intergenic 50.0%
TGGTGGTAAAGTTGCGGACA+GGG - chr4_1:46299690-46299709 None:intergenic 50.0%
ATGGTGGTAAAGTTGCGGAC+AGG - chr4_1:46299691-46299710 None:intergenic 50.0%
!!! GGGGGTTTTAGGAACAATGG+TGG - chr4_1:46299707-46299726 None:intergenic 50.0%
GCAGGTGAAAGGCTGTATCT+CGG + chr4_1:46299996-46300015 Msa0550760:CDS 50.0%
CAGGTGAAAGGCTGTATCTC+GGG + chr4_1:46299997-46300016 Msa0550760:CDS 50.0%
TGAAAGGCTGTATCTCGGGT+TGG + chr4_1:46300001-46300020 Msa0550760:CDS 50.0%
!! CTGTATCTCGGGTTGGACTT+TGG + chr4_1:46300008-46300027 Msa0550760:CDS 50.0%
CTCTGTGTAAGCTCGTGTCA+TGG + chr4_1:46300821-46300840 Msa0550760:CDS 50.0%
TGTGTAAGCTCGTGTCATGG+TGG + chr4_1:46300824-46300843 Msa0550760:CDS 50.0%
! GTGTCATGGTGGAATCGTGA+TGG + chr4_1:46300835-46300854 Msa0550760:CDS 50.0%
GCCACAAAAGCCAATCTGCT+TGG - chr4_1:46300891-46300910 None:intergenic 50.0%
CTCTGTTGCGATATCCGAGT+TGG + chr4_1:46301014-46301033 Msa0550760:intron 50.0%
GGTTGGGTATGATCCTGAAG+TGG + chr4_1:46301069-46301088 Msa0550760:intron 50.0%
! GGTTGAGAGACTAGCCATGA+TGG - chr4_1:46301103-46301122 None:intergenic 50.0%
TTACCGTCCGTTATTGCACC+TGG + chr4_1:46301136-46301155 Msa0550760:CDS 50.0%
! GTTCCAGGTGCAATAACGGA+CGG - chr4_1:46301142-46301161 None:intergenic 50.0%
GCGTTGAGACTTGAGACACA+CGG + chr4_1:46301542-46301561 Msa0550760:intron 50.0%
CCAACCATGGGAACGAACAA+AGG - chr4_1:46302112-46302131 None:intergenic 50.0%
CCTTTGTTCGTTCCCATGGT+TGG + chr4_1:46302109-46302128 Msa0550760:intron 50.0%
GGTGGTGCTTCAAATACTGG+AGG + chr4_1:46302342-46302361 Msa0550760:CDS 50.0%
! CTTTCACCAGCTTTTGGCAG+AGG - chr4_1:46302459-46302478 None:intergenic 50.0%
TCCGGTTGCAGATCCAGATT+TGG + chr4_1:46302482-46302501 Msa0550760:CDS 50.0%
GCCAAATCTGGATCTGCAAC+CGG - chr4_1:46302486-46302505 None:intergenic 50.0%
! CAGATCCAGATTTGGCTCCA+AGG + chr4_1:46302490-46302509 Msa0550760:CDS 50.0%
CAGTACCTTGGAGCCAAATC+TGG - chr4_1:46302498-46302517 None:intergenic 50.0%
!! ACTCACTTGGGTTGGCATGA+TGG + chr4_1:46302611-46302630 Msa0550760:intron 50.0%
!! TTGGGTTGGCATGATGGTGT+TGG + chr4_1:46302617-46302636 Msa0550760:intron 50.0%
!! TTGGCATGATGGTGTTGGCT+TGG + chr4_1:46302622-46302641 Msa0550760:intron 50.0%
!! TGGCATGATGGTGTTGGCTT+GGG + chr4_1:46302623-46302642 Msa0550760:intron 50.0%
!! CTCCTTGGTGCCAATTTCGT+TGG + chr4_1:46302679-46302698 Msa0550760:intron 50.0%
GCTAGTCCATAACCTGCAAG+TGG + chr4_1:46302702-46302721 Msa0550760:intron 50.0%
CATCGTCCACTTGCAGGTTA+TGG - chr4_1:46302711-46302730 None:intergenic 50.0%
CATAACCTGCAAGTGGACGA+TGG + chr4_1:46302709-46302728 Msa0550760:intron 50.0%
!! TTTCTTGAGAAGGCACCGCT+AGG + chr4_1:46303348-46303367 Msa0550760:intron 50.0%
GGAGTCCATTGCACGTATAG+AGG + chr4_1:46303890-46303909 Msa0550760:CDS 50.0%
! GATCAAGTTTTCACAGCCGG+TGG + chr4_1:46304613-46304632 Msa0550760:CDS 50.0%
!! CTCATTTTTCGCTCCTCCAC+CGG - chr4_1:46304632-46304651 None:intergenic 50.0%
!! GTTTGGTTTGCACGACTCAC+AGG - chr4_1:46304691-46304710 None:intergenic 50.0%
TGGCGCATTTGCCCTTAAGT+TGG - chr4_1:46304775-46304794 None:intergenic 50.0%
GGTAAAGTTGCGGACAGGGA+GGG - chr4_1:46299686-46299705 None:intergenic 55.0%
TGGTAAAGTTGCGGACAGGG+AGG - chr4_1:46299687-46299706 None:intergenic 55.0%
GTAGTGTGGGAGCAGGTGAA+AGG + chr4_1:46299985-46300004 Msa0550760:CDS 55.0%
GGGTTGGACTTTGGCACTTC+CGG + chr4_1:46300017-46300036 Msa0550760:CDS 55.0%
TGGTGGCACAATTCAAGCCG+AGG + chr4_1:46300064-46300083 Msa0550760:CDS 55.0%
GCGACCCTATCCGCTATACT+CGG + chr4_1:46300091-46300110 Msa0550760:CDS 55.0%
CACATGATTGGGTACGCTCG+TGG + chr4_1:46300301-46300320 Msa0550760:CDS 55.0%
TGATTGGGTACGCTCGTGGA+AGG + chr4_1:46300305-46300324 Msa0550760:CDS 55.0%
GTGACACAGGAGAACCGTTG+TGG + chr4_1:46300704-46300723 Msa0550760:intron 55.0%
GGCTCCTTTGTTCGTTCCCA+TGG + chr4_1:46302105-46302124 Msa0550760:intron 55.0%
GCCCAACGAAATTGGCACCA+AGG - chr4_1:46302684-46302703 None:intergenic 55.0%
CAATCCCATCGTCCACTTGC+AGG - chr4_1:46302717-46302736 None:intergenic 55.0%
CTGCAAGTGGACGATGGGAT+TGG + chr4_1:46302715-46302734 Msa0550760:intron 55.0%
GACGATGGGATTGGATCCCT+TGG + chr4_1:46302724-46302743 Msa0550760:intron 55.0%
! CAAGTTTTCACAGCCGGTGG+AGG + chr4_1:46304616-46304635 Msa0550760:CDS 55.0%
! CGGATAGGGTCGCTTTGCCT+CGG - chr4_1:46300084-46300103 None:intergenic 60.0%
! GCAGCTCGTGCTACTCAACC+TGG + chr4_1:46301792-46301811 Msa0550760:CDS 60.0%
CGCTCTCTGAGCCTTGAGCC+TGG + chr4_1:46301324-46301343 Msa0550760:intron 65.0%
TCTGAGCCTTGAGCCTGGCC+TGG + chr4_1:46301329-46301348 Msa0550760:intron 65.0%
GTTGGCTATCGGGGCTCACC+AGG - chr4_1:46301350-46301369 None:intergenic 65.0%
!! GGCTCAGAGAGCGCTGACCG+TGG - chr4_1:46301317-46301336 None:intergenic 70.0%
GGCTCACCAGGCCAGGCTCA+AGG - chr4_1:46301338-46301357 None:intergenic 70.0%
CTATCGGGGCTCACCAGGCC+AGG - chr4_1:46301345-46301364 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr4_1 gene 46299660 46305002 46299660 ID=Msa0550760;Name=Msa0550760
chr4_1 mRNA 46299660 46305002 46299660 ID=Msa0550760-mRNA-1;Parent=Msa0550760;Name=Msa0550760-mRNA-1;_AED=0.23;_eAED=0.23;_QI=90|1|1|1|1|1|9|231|480
chr4_1 exon 46299660 46299822 46299660 ID=Msa0550760-mRNA-1:exon:12407;Parent=Msa0550760-mRNA-1
chr4_1 exon 46299910 46300112 46299910 ID=Msa0550760-mRNA-1:exon:12408;Parent=Msa0550760-mRNA-1
chr4_1 exon 46300291 46300430 46300291 ID=Msa0550760-mRNA-1:exon:12409;Parent=Msa0550760-mRNA-1
chr4_1 exon 46300705 46300957 46300705 ID=Msa0550760-mRNA-1:exon:12410;Parent=Msa0550760-mRNA-1
chr4_1 exon 46301070 46301202 46301070 ID=Msa0550760-mRNA-1:exon:12411;Parent=Msa0550760-mRNA-1
chr4_1 exon 46301733 46301821 46301733 ID=Msa0550760-mRNA-1:exon:12412;Parent=Msa0550760-mRNA-1
chr4_1 exon 46302234 46302511 46302234 ID=Msa0550760-mRNA-1:exon:12413;Parent=Msa0550760-mRNA-1
chr4_1 exon 46303842 46303911 46303842 ID=Msa0550760-mRNA-1:exon:12414;Parent=Msa0550760-mRNA-1
chr4_1 exon 46304568 46305002 46304568 ID=Msa0550760-mRNA-1:exon:12415;Parent=Msa0550760-mRNA-1
chr4_1 five_prime_UTR 46299660 46299749 46299660 ID=Msa0550760-mRNA-1:five_prime_utr;Parent=Msa0550760-mRNA-1
chr4_1 CDS 46299750 46299822 46299750 ID=Msa0550760-mRNA-1:cds;Parent=Msa0550760-mRNA-1
chr4_1 CDS 46299910 46300112 46299910 ID=Msa0550760-mRNA-1:cds;Parent=Msa0550760-mRNA-1
chr4_1 CDS 46300291 46300430 46300291 ID=Msa0550760-mRNA-1:cds;Parent=Msa0550760-mRNA-1
chr4_1 CDS 46300705 46300957 46300705 ID=Msa0550760-mRNA-1:cds;Parent=Msa0550760-mRNA-1
chr4_1 CDS 46301070 46301202 46301070 ID=Msa0550760-mRNA-1:cds;Parent=Msa0550760-mRNA-1
chr4_1 CDS 46301733 46301821 46301733 ID=Msa0550760-mRNA-1:cds;Parent=Msa0550760-mRNA-1
chr4_1 CDS 46302234 46302511 46302234 ID=Msa0550760-mRNA-1:cds;Parent=Msa0550760-mRNA-1
chr4_1 CDS 46303842 46303911 46303842 ID=Msa0550760-mRNA-1:cds;Parent=Msa0550760-mRNA-1
chr4_1 CDS 46304568 46304771 46304568 ID=Msa0550760-mRNA-1:cds;Parent=Msa0550760-mRNA-1
chr4_1 three_prime_UTR 46304772 46305002 46304772 ID=Msa0550760-mRNA-1:three_prime_utr;Parent=Msa0550760-mRNA-1
Gene Sequence

>Msa0550760

ATGGTAGGCACTGTTTCAGTAACCCACCCAGCAAGCACCATTTTAACATCTTTGACGTATAGTCGAAAACTTGGAAACAGGTTATTACTGTTAGGTAACAAACCAAGAACAGTATCAATGTCTCTCAAAAACGGAGATAACAAAAAAAGTAGTGTGGGAGCAGGTGAAAGGCTGTATCTCGGGTTGGACTTTGGCACTTCCGGTGCAAGATTTGCTATCATTGACATTGGTGGCACAATTCAAGCCGAGGCAAAGCGACCCTATCCGCTATACTCGAATGGAGAGTCACATGATTGGGTACGCTCGTGGAAGGAGACACTTTTTTTGTTGCTTGGAGATATCCCACTTAACCTTCGCAAATACATTGTGTCGATTTCTATTGATGGCACATCTGCAACTACTATCATTGTTGATAGTGACACAGGAGAACCGTTGTGGAGACCTTTACTTTACAATGAGAGTTGTCCTGATGCACTACCTGCTGTAAAATCCATTGCACCTCCAAACCATACAGTATGCTCTGCATCGTCGACTCTGTGTAAGCTCGTGTCATGGTGGAATCGTGATGGTTCAAACAAAAAATCTGCTCTGTTATTGCACCAAGCAGATTGGCTTTTGTGGCTTCTTCATGGAAAGCTTGGAGTTTCAGATTATAATAATGCTCTGAAGGTTGGGTATGATCCTGAAGTGGACTCATATCCATCATGGCTAGTCTCTCAACCATATTCTCATCTTTTACCGTCCGTTATTGCACCTGGAACTCCAATTGCTTGTTTAAAGGAGGAACTTAAAAATAAATTTGGTTTTCAAAAGGAGTGTGTTGTATGCACCGGAACCACTGACAGTATAGCTGCGTTTCTTGCAGCTCGTGCTACTCAACCTGGAAAAGCTGTTACATCATTGGGTTCAACACTTGCTATTAAACTATTAAGCAACACAAGAATCGAGGATTCTCGGTTTGGGGTGTATAGTCATCGCCTTGATGATAAATGGCTTGTTGGTGGTGCTTCAAATACTGGAGGAGTTGTTCTTAGACAGCTTTTCACCGATGATCAACTAGAGAAACTGAGTGAACAAATCAATCCCTCACAAATATCTTCCTTAGACTACTATCCTCTGCCAAAAGCTGGTGAAAGATTTCCGGTTGCAGATCCAGATTTGGCTCCAAGGTTACTTCCACGTCCAGAAAATGATGTTGAATACTTGCATGGAATTTTGGAGTCCATTGCACGTATAGAGGCAAAGGGATATGGGTTGCTAAAGGATCTAGGTGCAACCGCAGTAGATCAAGTTTTCACAGCCGGTGGAGGAGCGAAAAATGAGAAGTGGACAAAGATACGAGAAAGGGTGCTTGGTTTACCTGTGAGTCGTGCAAACCAAACAGAAGCTGCATATGGAACTGCATTGTTGGCAATAAAGGGTGATCAACAAAATATTTTGTGA

Protein sequence

>Msa0550760

MVGTVSVTHPASTILTSLTYSRKLGNRLLLLGNKPRTVSMSLKNGDNKKSSVGAGERLYLGLDFGTSGARFAIIDIGGTIQAEAKRPYPLYSNGESHDWVRSWKETLFLLLGDIPLNLRKYIVSISIDGTSATTIIVDSDTGEPLWRPLLYNESCPDALPAVKSIAPPNHTVCSASSTLCKLVSWWNRDGSNKKSALLLHQADWLLWLLHGKLGVSDYNNALKVGYDPEVDSYPSWLVSQPYSHLLPSVIAPGTPIACLKEELKNKFGFQKECVVCTGTTDSIAAFLAARATQPGKAVTSLGSTLAIKLLSNTRIEDSRFGVYSHRLDDKWLVGGASNTGGVVLRQLFTDDQLEKLSEQINPSQISSLDYYPLPKAGERFPVADPDLAPRLLPRPENDVEYLHGILESIARIEAKGYGLLKDLGATAVDQVFTAGGGAKNEKWTKIRERVLGLPVSRANQTEAAYGTALLAIKGDQQNIL*