AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1096280

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1096280 MtrunA17_Chr7g0226991 92.010 388 31 0 29 416 21 408 0.0 760
Msa1096280 MtrunA17_Chr8g0391481 77.596 366 82 0 51 416 13 378 0.0 615
Msa1096280 MtrunA17_Chr3g0140371 71.745 361 99 3 56 416 9 366 0.0 547
Msa1096280 MtrunA17_Chr5g0414051 63.566 387 134 5 28 412 41 422 6.75e-178 503
Msa1096280 MtrunA17_Chr5g0414091 64.507 355 119 4 62 412 82 433 6.25e-169 480
Msa1096280 MtrunA17_Chr5g0414061 58.449 361 141 5 56 412 85 440 2.78e-154 443
Msa1096280 MtrunA17_Chr5g0414041 59.490 353 136 4 64 412 86 435 1.34e-151 436
Msa1096280 MtrunA17_Chr5g0414081 81.000 200 38 0 213 412 2 201 1.61e-120 348
Msa1096280 MtrunA17_Chr6g0456691 42.697 356 186 9 63 411 76 420 1.29e-103 314
Msa1096280 MtrunA17_Chr8g0387921 41.127 355 197 7 65 413 74 422 1.21e-94 290
Msa1096280 MtrunA17_Chr8g0347321 39.266 354 202 6 63 410 93 439 1.72e-93 288
Msa1096280 MtrunA17_Chr6g0456681 41.061 358 192 8 63 411 62 409 1.91e-88 275
Msa1096280 MtrunA17_Chr6g0451321 35.233 386 233 10 33 412 85 459 1.16e-77 248
Msa1096280 MtrunA17_Chr2g0283851 36.658 371 202 13 59 412 48 402 1.27e-77 246
Msa1096280 MtrunA17_Chr1g0188191 36.124 418 234 14 19 412 175 583 1.55e-73 241
Msa1096280 MtrunA17_Chr6g0476041 35.230 369 207 12 61 412 163 516 6.51e-66 219
Msa1096280 MtrunA17_Chr7g0259711 34.218 377 196 15 64 416 90 438 1.43e-56 192
Msa1096280 MtrunA17_Chr7g0221281 37.247 247 139 8 170 411 2 237 1.02e-54 182
Msa1096280 MtrunA17_Chr1g0175671 32.048 415 228 17 24 412 126 512 2.43e-47 169
Msa1096280 MtrunA17_Chr5g0413271 29.737 380 232 11 48 416 128 483 2.59e-47 169
Msa1096280 MtrunA17_Chr8g0384151 29.765 383 222 12 42 410 67 416 9.84e-47 166
Msa1096280 MtrunA17_Chr2g0287901 31.099 373 204 13 64 412 96 439 1.05e-45 164
Msa1096280 MtrunA17_Chr4g0071391 30.102 392 225 14 40 410 83 446 3.53e-45 162
Msa1096280 MtrunA17_Chr8g0368461 29.381 388 212 12 61 414 174 533 2.05e-44 162
Msa1096280 MtrunA17_Chr7g0258851 32.312 359 203 13 65 406 248 583 3.53e-44 162
Msa1096280 MtrunA17_Chr5g0430371 28.169 355 231 8 62 406 55 395 5.54e-43 155
Msa1096280 MtrunA17_Chr1g0213281 30.809 383 216 14 56 414 166 523 1.70e-42 156
Msa1096280 MtrunA17_Chr4g0005491 29.902 408 251 15 16 406 14 403 7.48e-41 149
Msa1096280 MtrunA17_Chr7g0221271 47.287 129 66 1 63 189 77 205 8.21e-41 144
Msa1096280 MtrunA17_Chr8g0384421 27.225 382 230 11 50 410 118 472 8.41e-40 148
Msa1096280 MtrunA17_Chr8g0360521 29.111 371 224 14 58 412 64 411 1.02e-39 147
Msa1096280 MtrunA17_Chr3g0105301 28.693 352 225 9 62 406 40 372 1.24e-39 145
Msa1096280 MtrunA17_Chr7g0269991 28.718 390 221 12 44 407 106 464 1.95e-39 147
Msa1096280 MtrunA17_Chr4g0068111 30.194 361 218 11 64 410 113 453 5.63e-39 145
Msa1096280 MtrunA17_Chr3g0126021 29.144 374 196 14 64 410 128 459 1.47e-37 142
Msa1096280 MtrunA17_Chr3g0113671 29.558 362 219 12 62 406 103 445 2.28e-37 141
Msa1096280 MtrunA17_Chr3g0085081 29.143 350 208 10 63 406 29 344 5.33e-37 138
Msa1096280 MtrunA17_Chr4g0006991 28.771 358 227 12 65 410 86 427 1.62e-36 138
Msa1096280 MtrunA17_Chr1g0171171 27.654 358 216 11 63 410 51 375 2.75e-36 136
Msa1096280 MtrunA17_Chr7g0243301 30.556 360 214 13 65 406 64 405 3.78e-36 137
Msa1096280 MtrunA17_Chr4g0070341 27.027 370 220 10 63 410 130 471 4.48e-36 137
Msa1096280 MtrunA17_Chr3g0085071 29.310 348 206 10 65 406 46 359 4.54e-36 135
Msa1096280 MtrunA17_Chr7g0242701 29.340 409 234 17 27 410 49 427 1.56e-35 135
Msa1096280 MtrunA17_Chr3g0091031 28.691 359 198 9 63 406 29 344 3.07e-35 133
Msa1096280 MtrunA17_Chr1g0210771 27.401 354 215 12 63 406 57 378 8.14e-33 127
Msa1096280 MtrunA17_Chr2g0314801 29.363 361 206 15 62 410 30 353 4.97e-32 124
Msa1096280 MtrunA17_Chr6g0455901 26.943 386 214 15 64 415 70 421 8.52e-32 125
Msa1096280 MtrunA17_Chr4g0049421 29.581 382 202 15 65 413 48 395 1.72e-31 124
Msa1096280 MtrunA17_Chr3g0114101 28.212 358 223 11 65 407 89 427 7.46e-31 122
Msa1096280 MtrunA17_Chr7g0221291 43.220 118 67 0 37 154 51 168 1.18e-30 115
Msa1096280 MtrunA17_Chr3g0097891 27.920 351 215 11 62 406 28 346 1.29e-30 120
Msa1096280 MtrunA17_Chr2g0283581 27.095 358 224 10 57 410 34 358 1.67e-30 120
Msa1096280 MtrunA17_Chr4g0045941 27.586 348 214 11 64 406 32 346 3.03e-30 119
Msa1096280 MtrunA17_Chr4g0041011 27.749 382 225 15 41 410 21 363 4.62e-30 119
Msa1096280 MtrunA17_Chr5g0437601 26.849 365 225 13 62 407 80 421 5.33e-30 120
Msa1096280 MtrunA17_Chr5g0413851 29.213 356 200 14 63 406 40 355 7.17e-30 119
Msa1096280 MtrunA17_Chr2g0314791 27.147 361 212 12 61 410 25 345 8.03e-30 118
Msa1096280 MtrunA17_Chr4g0045951 28.691 359 220 12 52 406 32 358 1.07e-29 118
Msa1096280 MtrunA17_Chr4g0005481 28.418 373 210 15 63 410 106 446 6.87e-29 117
Msa1096280 MtrunA17_Chr2g0325481 26.997 363 208 13 58 406 43 362 3.95e-28 114
Msa1096280 MtrunA17_Chr5g0437291 26.216 370 222 14 63 406 163 507 1.36e-26 111
Msa1096280 MtrunA17_Chr7g0227021 80.000 55 11 0 2 56 61 115 3.19e-22 91.3
Msa1096280 MtrunA17_Chr1g0209921 34.483 174 104 5 63 231 42 210 3.14e-19 87.0
Msa1096280 MtrunA17_Chr1g0178081 33.684 190 109 8 56 231 47 233 1.25e-17 84.0
Msa1096280 MtrunA17_Chr1g0178081 37.168 113 58 5 302 412 243 344 3.42e-11 64.3
Msa1096280 MtrunA17_Chr7g0275501 55.738 61 24 1 349 409 11 68 1.86e-16 73.6
Msa1096280 MtrunA17_Chr4g0057171 38.776 98 51 4 204 301 1 89 1.87e-14 69.7
Msa1096280 MtrunA17_Chr2g0287911 46.429 56 23 1 65 120 61 109 5.61e-11 59.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1096280 AT1G70230.1 48.493 365 164 9 54 414 71 415 1.09e-122 362
Msa1096280 AT1G01430.1 40.443 361 200 9 59 410 93 447 4.04e-95 293
Msa1096280 AT3G02440.2 41.076 353 192 10 65 411 135 477 9.55e-92 285
Msa1096280 AT3G02440.1 41.076 353 192 10 65 411 127 469 9.67e-92 285
Msa1096280 AT5G15890.1 43.539 356 179 12 62 411 184 523 4.21e-91 285
Msa1096280 AT4G11090.1 38.601 386 221 9 39 414 50 429 2.91e-90 280
Msa1096280 AT4G01080.1 40.230 348 194 8 65 408 91 428 4.78e-90 280
Msa1096280 AT4G23790.1 39.276 359 205 8 63 413 77 430 8.60e-90 278
Msa1096280 AT5G15900.1 38.889 360 201 10 64 415 66 414 2.71e-86 269
Msa1096280 AT5G15900.2 38.889 360 201 10 64 415 85 433 5.19e-86 269
Msa1096280 AT3G28150.1 38.017 363 203 11 59 412 63 412 1.48e-80 254
Msa1096280 AT4G25360.1 34.951 412 229 14 24 414 135 528 1.54e-69 229
Msa1096280 AT4G25360.2 34.951 412 229 14 24 414 135 528 1.54e-69 229
Msa1096280 AT5G51640.1 35.065 385 233 10 39 412 112 490 4.26e-68 224
Msa1096280 AT5G19160.1 31.720 372 214 11 65 416 99 450 1.45e-50 177
Msa1096280 AT1G48880.1 33.243 367 192 14 62 412 112 441 6.38e-49 172
Msa1096280 AT3G12060.1 33.333 366 194 12 63 406 194 531 2.79e-46 167
Msa1096280 AT3G06080.2 31.367 373 203 12 65 412 103 447 8.03e-46 164
Msa1096280 AT2G30010.1 29.104 402 250 12 22 410 17 396 1.35e-45 162
Msa1096280 AT2G30010.2 29.104 402 250 12 22 410 60 439 3.47e-45 162
Msa1096280 AT5G06700.1 31.635 373 204 14 63 412 253 597 5.94e-45 164
Msa1096280 AT5G64020.1 28.919 370 221 11 65 410 57 408 6.88e-45 160
Msa1096280 AT5G58600.1 30.312 353 227 8 62 410 63 400 4.75e-43 155
Msa1096280 AT1G60790.1 29.268 369 219 10 65 413 190 536 1.95e-42 157
Msa1096280 AT5G06230.2 30.214 374 215 13 59 410 15 364 8.92e-42 151
Msa1096280 AT1G73140.1 28.989 376 229 14 57 416 59 412 9.18e-42 152
Msa1096280 AT5G06230.1 30.214 374 215 13 59 410 56 405 2.29e-41 151
Msa1096280 AT2G14530.1 30.208 384 203 15 59 410 56 406 3.72e-41 150
Msa1096280 AT3G11570.1 31.594 345 198 10 81 410 98 419 1.35e-40 149
Msa1096280 AT5G20590.1 31.129 363 213 13 63 410 139 479 2.20e-40 150
Msa1096280 AT5G20680.6 26.190 378 213 11 63 410 116 457 4.81e-40 149
Msa1096280 AT5G20680.2 26.190 378 213 11 63 410 192 533 1.77e-39 148
Msa1096280 AT5G20680.4 26.190 378 213 11 63 410 210 551 2.20e-39 148
Msa1096280 AT5G20680.1 26.190 378 213 11 63 410 210 551 2.20e-39 148
Msa1096280 AT5G20680.3 26.190 378 213 11 63 410 210 551 2.20e-39 148
Msa1096280 AT5G20680.5 26.190 378 213 11 63 410 210 551 2.20e-39 148
Msa1096280 AT2G40160.1 28.382 377 231 13 51 406 61 419 2.80e-38 143
Msa1096280 AT2G40160.2 28.382 377 231 13 51 406 61 419 2.95e-38 144
Msa1096280 AT2G37720.1 27.105 380 231 11 51 410 129 482 9.73e-38 143
Msa1096280 AT3G62390.1 28.266 421 254 17 16 412 78 474 2.20e-37 142
Msa1096280 AT5G49340.1 28.650 363 223 13 64 410 99 441 2.35e-37 141
Msa1096280 AT2G40150.1 28.497 386 235 15 45 406 48 416 3.81e-37 140
Msa1096280 AT3G11030.1 30.601 366 211 13 65 410 106 448 1.47e-36 139
Msa1096280 AT2G38320.1 30.556 360 218 15 63 406 57 400 2.26e-36 138
Msa1096280 AT3G14850.2 30.423 355 208 10 63 410 32 354 4.62e-35 133
Msa1096280 AT3G55990.1 28.571 371 232 14 51 406 127 479 2.21e-34 134
Msa1096280 AT5G01360.2 27.809 356 228 12 65 407 36 375 2.67e-34 131
Msa1096280 AT2G42570.1 27.273 363 230 8 51 410 33 364 3.49e-34 131
Msa1096280 AT2G30900.1 29.661 354 212 12 60 406 38 361 3.89e-34 130
Msa1096280 AT2G40320.1 28.926 363 220 14 62 407 78 419 8.28e-34 131
Msa1096280 AT5G01360.1 27.809 356 228 12 65 407 92 431 1.08e-33 131
Msa1096280 AT5G19160.2 32.800 250 141 7 65 300 99 335 2.39e-33 128
Msa1096280 AT3G54260.1 26.722 363 202 14 65 406 51 370 1.90e-32 126
Msa1096280 AT2G38320.2 30.887 327 195 14 95 406 7 317 9.15e-32 123
Msa1096280 AT5G64470.3 27.793 367 217 15 65 410 55 394 1.20e-30 122
Msa1096280 AT5G64470.2 27.838 370 219 16 65 410 55 400 8.36e-30 119
Msa1096280 AT5G58600.2 31.950 241 147 6 62 299 63 289 1.47e-29 116
Msa1096280 AT1G29050.1 25.323 387 234 12 40 410 31 378 2.01e-29 118
Msa1096280 AT2G34070.1 26.000 350 224 10 65 410 65 383 3.12e-29 117
Msa1096280 AT5G01620.2 27.411 394 227 16 46 410 86 449 3.72e-29 118
Msa1096280 AT5G01620.1 27.411 394 227 16 46 410 86 449 3.72e-29 118
Msa1096280 AT5G01620.3 27.411 394 227 16 46 410 94 457 3.91e-29 118
Msa1096280 AT3G06080.1 31.873 251 144 7 65 301 103 340 8.01e-29 115
Msa1096280 AT2G31110.2 26.377 345 220 10 65 406 45 358 5.57e-27 111
Msa1096280 AT1G78710.1 27.887 355 211 14 65 410 38 356 3.83e-26 108
Msa1096280 AT2G40160.3 27.863 262 164 8 51 299 61 310 5.36e-26 107
Msa1096280 AT3G62390.2 27.922 308 190 10 16 302 78 374 2.38e-25 107
Msa1096280 AT5G20590.2 34.807 181 106 6 63 232 139 318 2.74e-25 106
Msa1096280 AT2G30900.2 35.593 177 104 4 60 232 38 208 6.47e-25 103
Msa1096280 AT5G06230.3 29.167 264 152 9 59 301 56 305 7.51e-24 101
Msa1096280 AT5G64470.1 26.056 284 176 10 65 329 55 323 7.69e-20 90.1
Msa1096280 AT5G64470.4 27.037 270 163 10 65 315 55 309 2.40e-19 88.6
Msa1096280 AT2G31110.3 31.953 169 107 3 65 231 45 207 3.06e-19 87.4
Msa1096280 AT1G78710.2 41.935 93 51 2 65 156 31 121 1.72e-15 77.0
Msa1096280 AT3G14850.1 27.208 283 167 10 135 410 1 251 6.02e-15 74.7
Msa1096280 AT2G34070.2 23.843 281 179 10 135 411 1 250 2.53e-11 63.9

Find 89 sgRNAs with CRISPR-Local

Find 303 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCCTCTCAATTATGGTATTA+AGG 0.127171 7_3:+20530465 None:intergenic
TATGAGAATGATTCAGTTAT+AGG 0.145787 7_3:-20530569 Msa1096280:CDS
TTCCAATGAGAAAGGCTTTA+AGG 0.178598 7_3:-20530493 Msa1096280:CDS
AAATCGAAATATAATGATAT+TGG 0.228288 7_3:-20530524 Msa1096280:CDS
TTCTTCTCCTCATATTTATA+TGG 0.234552 7_3:+20530341 None:intergenic
GGTGCTTGATATAACAAAAT+TGG 0.266267 7_3:-20530225 Msa1096280:CDS
CAGTGGATAATAAGCAAATA+AGG 0.272702 7_3:+20530840 None:intergenic
ATTGAGAGGAAAATGGTTAA+AGG 0.284287 7_3:-20530452 Msa1096280:CDS
CCTCTCAATTATGGTATTAA+GGG 0.288512 7_3:+20530466 None:intergenic
TACCATAATTGAGAGGAAAA+TGG 0.294605 7_3:-20530459 Msa1096280:CDS
AAGAGAGGCCCTTTGTATAA+TGG 0.328150 7_3:-20531058 Msa1096280:CDS
CGGACTCAAGCTACCTATAT+TGG 0.339810 7_3:-20530982 Msa1096280:CDS
GATCCAAATGTATTGTATTA+TGG 0.346737 7_3:+20530684 None:intergenic
TTTGAAGGTGCTTGGGATAA+GGG 0.348514 7_3:-20530386 Msa1096280:CDS
GGAAGCTAAGATAAGAAGTA+TGG 0.354835 7_3:-20530306 Msa1096280:CDS
ATCCTTAAAGCCTTTCTCAT+TGG 0.367454 7_3:+20530491 None:intergenic
CCTATATGATTGATATATAT+AGG 0.370282 7_3:+20530809 None:intergenic
TGATCACCCTTCACAAGAAA+TGG 0.373510 7_3:+20530728 None:intergenic
TTATGTTGTCATTTGGTCAT+TGG 0.375595 7_3:-20530616 Msa1096280:CDS
ACTGGAAGATCACACTCATT+TGG 0.381001 7_3:+20530950 None:intergenic
ACACCATAATACAATACATT+TGG 0.387084 7_3:-20530687 Msa1096280:CDS
CTCTTCTGTGGAGTTTCCAC+CGG 0.387453 7_3:+20532018 None:intergenic
CACAAGAAATGGTGACCAAT+AGG 0.397978 7_3:+20530739 None:intergenic
GATAAGAAGTATGGAAATAG+AGG 0.401481 7_3:-20530297 Msa1096280:CDS
ATGGTCATGCAGGAGCTTAT+AGG 0.404434 7_3:-20530187 Msa1096280:CDS
AGAGAGGCCCTTTGTATAAT+GGG 0.406143 7_3:-20531057 Msa1096280:CDS
CCTATATATATCAATCATAT+AGG 0.409590 7_3:-20530809 Msa1096280:CDS
GGCAAGTCATATAGATCAAA+TGG 0.424659 7_3:-20530645 Msa1096280:CDS
TTGAGAGGAAAATGGTTAAA+GGG 0.425058 7_3:-20530451 Msa1096280:CDS
GACTTGATTATGTTGTCATT+TGG 0.425500 7_3:-20530623 Msa1096280:CDS
TAAGCTCCTGCATGACCATC+TGG 0.436152 7_3:+20530191 None:intergenic
TGCCAGGACCTATTGATACT+TGG 0.439130 7_3:-20530100 Msa1096280:CDS
ATGAGTTTAAGAAAAGTGTT+TGG 0.443851 7_3:+20530920 None:intergenic
CGTGAAGTTTCCACCGGAGG+TGG 0.444506 7_3:+20531364 None:intergenic
GGACAACATGTAATGAGATC+AGG 0.445192 7_3:-20531036 Msa1096280:CDS
GTCAAGTTTGCATTGTAAGA+AGG 0.445730 7_3:+20530764 None:intergenic
TTGGTTTCCATCTCCAATAT+AGG 0.447965 7_3:+20530969 None:intergenic
TGTACCCATTGGTGCTTGCC+AGG 0.448190 7_3:-20530116 Msa1096280:CDS
ACAAATTGGATTAAATTTGA+AGG 0.455918 7_3:-20530246 Msa1096280:CDS
AGCAAATAAGGGACTCTAGT+TGG 0.456340 7_3:+20530852 None:intergenic
ATGCAAACTTGACATCCTAT+TGG 0.463771 7_3:-20530754 Msa1096280:CDS
CTCTTTCGTGAAGTTTCCAC+CGG 0.464812 7_3:+20531358 None:intergenic
TTGGTCACCATTTCTTGTGA+AGG 0.466989 7_3:-20530735 Msa1096280:CDS
ATCTCATTCCAAGTATCAAT+AGG 0.475718 7_3:+20530092 None:intergenic
AGTGGATAATAAGCAAATAA+GGG 0.476978 7_3:+20530841 None:intergenic
ATCAATCATATAGGCTCTGA+TGG 0.483349 7_3:-20530800 Msa1096280:CDS
TATGAGGAGAAGAAACTTGA+AGG 0.484559 7_3:-20530332 Msa1096280:CDS
GGAGAAGAAACTTGAAGGAA+TGG 0.484724 7_3:-20530327 Msa1096280:CDS
TAGGTCCTGGCAAGCACCAA+TGG 0.490539 7_3:+20530111 None:intergenic
AGTCAGAATTGCATTGTCAA+TGG 0.494531 7_3:-20531010 Msa1096280:CDS
AAGTCACATGATTTCTCAAG+AGG 0.505039 7_3:+20531106 None:intergenic
TGTGGAGTTTCCACCGGAGG+AGG 0.505899 7_3:+20532024 None:intergenic
ATGTTGTCCCATTATACAAA+GGG 0.513721 7_3:+20531050 None:intergenic
GATGAGCATCAGACCACCTC+CGG 0.516914 7_3:-20531377 Msa1096280:CDS
TGGTCACCATTTCTTGTGAA+GGG 0.517491 7_3:-20530734 Msa1096280:CDS
TCATTCTCATAGTAAATTGA+AGG 0.519956 7_3:+20530581 None:intergenic
CAATATAGGTAGCTTGAGTC+CGG 0.534234 7_3:+20530983 None:intergenic
CAAGCTACCTATATTGGAGA+TGG 0.534922 7_3:-20530976 Msa1096280:CDS
AGGTCCTGGCAAGCACCAAT+GGG 0.535727 7_3:+20530112 None:intergenic
GATTGGCATCATACCTCCTC+CGG 0.540084 7_3:-20532037 Msa1096280:CDS
GAAGGGTGATCAAAGAAGAA+AGG 0.541962 7_3:-20530717 Msa1096280:CDS
TTCTGTGGAGTTTCCACCGG+AGG 0.544292 7_3:+20532021 None:intergenic
TTGAGACCAGATGGTCATGC+AGG 0.546721 7_3:-20530197 Msa1096280:CDS
TTGTTGGAGACTCTTTAGCT+AGG 0.550665 7_3:-20530877 Msa1096280:CDS
CGTACTTGGTTCCTCTTCTG+TGG 0.560606 7_3:+20532006 None:intergenic
CGGTGGAAACTTCACGAAAG+AGG 0.561511 7_3:-20531357 Msa1096280:CDS
TTCCAAGTATCAATAGGTCC+TGG 0.562983 7_3:+20530098 None:intergenic
TTGCATTGTCAATGGAAGAC+CGG 0.563436 7_3:-20531002 Msa1096280:CDS
TACAAAACGATTGTACCCAT+TGG 0.571841 7_3:-20530127 Msa1096280:CDS
CATGTTGTCCCATTATACAA+AGG 0.572116 7_3:+20531049 None:intergenic
GGATCATGTAAATGAGAAGT+GGG 0.575626 7_3:-20530666 Msa1096280:CDS
AGAGGAAGCTGAAAATGCTA+AGG 0.578269 7_3:-20530279 Msa1096280:CDS
GACAACATGTAATGAGATCA+GGG 0.579294 7_3:-20531035 Msa1096280:CDS
TTGGCATTGTTGAGACCAGA+TGG 0.580057 7_3:-20530206 Msa1096280:CDS
TGGATCATGTAAATGAGAAG+TGG 0.584077 7_3:-20530667 Msa1096280:CDS
ATATAGGCTCTGATGGGAGG+TGG 0.587055 7_3:-20530793 Msa1096280:CDS
CGGTGGAAACTCCACAGAAG+AGG 0.591586 7_3:-20532017 Msa1096280:CDS
GGTGATCAAAGAAGAAAGGA+AGG 0.592694 7_3:-20530713 Msa1096280:CDS
ATCATATAGGCTCTGATGGG+AGG 0.608644 7_3:-20530796 Msa1096280:CDS
TGGCATCATACCTCCTCCGG+TGG 0.614915 7_3:-20532034 Msa1096280:CDS
TTTCGTGAAGTTTCCACCGG+AGG 0.615197 7_3:+20531361 None:intergenic
TCAATCATATAGGCTCTGAT+GGG 0.619159 7_3:-20530799 Msa1096280:CDS
CAAGCACCTTCAAAATGAGT+AGG 0.622237 7_3:+20530395 None:intergenic
CCCTTAATACCATAATTGAG+AGG 0.626460 7_3:-20530466 Msa1096280:CDS
GAAGGTGCTTGGGATAAGGG+TGG 0.629002 7_3:-20530383 Msa1096280:CDS
AATTGGGTTCATGACAAGAG+AGG 0.631764 7_3:-20531073 Msa1096280:CDS
GAGCATCAGACCACCTCCGG+TGG 0.632103 7_3:-20531374 Msa1096280:CDS
AAATGTATTGTATTATGGTG+TGG 0.675839 7_3:+20530689 None:intergenic
GTGATCAAAGAAGAAAGGAA+GGG 0.689434 7_3:-20530712 Msa1096280:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTATTAATGAAAAATTGAA+TGG - chr7_3:20529927-20529946 Msa1096280:three_prime_UTR 10.0%
!! AATTAATTTAAATCATATGA+TGG - chr7_3:20530034-20530053 Msa1096280:three_prime_UTR 10.0%
!! ATTGAAAATATATTCATAAT+CGG + chr7_3:20530237-20530256 None:intergenic 10.0%
!! ATTACTAATAAAAAATTGAA+TGG - chr7_3:20530587-20530606 Msa1096280:CDS 10.0%
!!! TTTTTTTTTCATTACATTTT+AGG + chr7_3:20531994-20532013 None:intergenic 10.0%
!! AAAAAAAAACAAGATTAAAT+AGG + chr7_3:20532072-20532091 None:intergenic 10.0%
!!! TTAATCTTGTTTTTTTTTAA+AGG - chr7_3:20532074-20532093 Msa1096280:CDS 10.0%
!! ATTATTAATGAAAAATTGAA+TGG - chr7_3:20529927-20529946 Msa1096280:three_prime_UTR 10.0%
!! AATTAATTTAAATCATATGA+TGG - chr7_3:20530034-20530053 Msa1096280:three_prime_UTR 10.0%
!! ATTGAAAATATATTCATAAT+CGG + chr7_3:20530237-20530256 None:intergenic 10.0%
!! ATTACTAATAAAAAATTGAA+TGG - chr7_3:20530587-20530606 Msa1096280:CDS 10.0%
!!! TTTTTTTTTCATTACATTTT+AGG + chr7_3:20531994-20532013 None:intergenic 10.0%
!! AAAAAAAAACAAGATTAAAT+AGG + chr7_3:20532072-20532091 None:intergenic 10.0%
!! TTGAAAATATATTCATAATC+GGG + chr7_3:20530236-20530255 None:intergenic 15.0%
!!! AATTTGATTGATATTTTTGA+GGG - chr7_3:20530399-20530418 Msa1096280:CDS 15.0%
!!! ATACTTTAGAAGAATATTTT+GGG - chr7_3:20530492-20530511 Msa1096280:CDS 15.0%
!! CAAAAATTAAAAGAATAATC+AGG + chr7_3:20530850-20530869 None:intergenic 15.0%
!!! CTGATTATTCTTTTAATTTT+TGG - chr7_3:20530848-20530867 Msa1096280:CDS 15.0%
!! AAATCGAAATATAATGATAT+TGG - chr7_3:20531467-20531486 Msa1096280:intron 15.0%
!!! TTTTTTTTTGCTTACATTTT+GGG + chr7_3:20532034-20532053 None:intergenic 15.0%
!!! TTTTTTTTTTGCTTACATTT+TGG + chr7_3:20532035-20532054 None:intergenic 15.0%
!! TTGAAAATATATTCATAATC+GGG + chr7_3:20530236-20530255 None:intergenic 15.0%
!!! AATTTGATTGATATTTTTGA+GGG - chr7_3:20530399-20530418 Msa1096280:CDS 15.0%
!!! ATACTTTAGAAGAATATTTT+GGG - chr7_3:20530492-20530511 Msa1096280:CDS 15.0%
!! CAAAAATTAAAAGAATAATC+AGG + chr7_3:20530850-20530869 None:intergenic 15.0%
!!! CTGATTATTCTTTTAATTTT+TGG - chr7_3:20530848-20530867 Msa1096280:CDS 15.0%
!! AAATCGAAATATAATGATAT+TGG - chr7_3:20531467-20531486 Msa1096280:intron 15.0%
!!! TTTTTTTTTGCTTACATTTT+GGG + chr7_3:20532034-20532053 None:intergenic 15.0%
!!! TTTTTTTTTTGCTTACATTT+TGG + chr7_3:20532035-20532054 None:intergenic 15.0%
!! ATTAATGAAAAATTGAATGG+TGG - chr7_3:20529930-20529949 Msa1096280:three_prime_UTR 20.0%
!!! GAATTTGATTGATATTTTTG+AGG - chr7_3:20530398-20530417 Msa1096280:CDS 20.0%
!!! ATTTGATTGATATTTTTGAG+GGG - chr7_3:20530400-20530419 Msa1096280:CDS 20.0%
!!! AAAGTATCTATATATTGACA+AGG + chr7_3:20530479-20530498 None:intergenic 20.0%
!!! GATACTTTAGAAGAATATTT+TGG - chr7_3:20530491-20530510 Msa1096280:CDS 20.0%
!! ACTAATAAAAAATTGAATGG+TGG - chr7_3:20530590-20530609 Msa1096280:CDS 20.0%
!!! AATTAATTTTAGTCACACTA+TGG - chr7_3:20530694-20530713 Msa1096280:CDS 20.0%
!!! AAATCATGTGACTTTTTAAT+TGG - chr7_3:20530894-20530913 Msa1096280:CDS 20.0%
!! CCTATATGATTGATATATAT+AGG + chr7_3:20531185-20531204 None:intergenic 20.0%
!! CCTATATATATCAATCATAT+AGG - chr7_3:20531182-20531201 Msa1096280:intron 20.0%
!! AAGGAAAAATCTAAACAAAT+TGG - chr7_3:20531731-20531750 Msa1096280:intron 20.0%
!! ACAAATTGGATTAAATTTGA+AGG - chr7_3:20531745-20531764 Msa1096280:intron 20.0%
!!! TTTTTCATTACATTTTAGGA+GGG + chr7_3:20531990-20532009 None:intergenic 20.0%
!!! TTTTTTCATTACATTTTAGG+AGG + chr7_3:20531991-20532010 None:intergenic 20.0%
!! ATTAATGAAAAATTGAATGG+TGG - chr7_3:20529930-20529949 Msa1096280:three_prime_UTR 20.0%
!!! GAATTTGATTGATATTTTTG+AGG - chr7_3:20530398-20530417 Msa1096280:CDS 20.0%
!!! ATTTGATTGATATTTTTGAG+GGG - chr7_3:20530400-20530419 Msa1096280:CDS 20.0%
!!! AAAGTATCTATATATTGACA+AGG + chr7_3:20530479-20530498 None:intergenic 20.0%
!!! GATACTTTAGAAGAATATTT+TGG - chr7_3:20530491-20530510 Msa1096280:CDS 20.0%
!! ACTAATAAAAAATTGAATGG+TGG - chr7_3:20530590-20530609 Msa1096280:CDS 20.0%
!!! AATTAATTTTAGTCACACTA+TGG - chr7_3:20530694-20530713 Msa1096280:CDS 20.0%
!!! AAATCATGTGACTTTTTAAT+TGG - chr7_3:20530894-20530913 Msa1096280:CDS 20.0%
!! CCTATATGATTGATATATAT+AGG + chr7_3:20531185-20531204 None:intergenic 20.0%
!! CCTATATATATCAATCATAT+AGG - chr7_3:20531182-20531201 Msa1096280:intron 20.0%
!! AAGGAAAAATCTAAACAAAT+TGG - chr7_3:20531731-20531750 Msa1096280:intron 20.0%
!! ACAAATTGGATTAAATTTGA+AGG - chr7_3:20531745-20531764 Msa1096280:intron 20.0%
!!! TTTTTCATTACATTTTAGGA+GGG + chr7_3:20531990-20532009 None:intergenic 20.0%
!!! TTTTTTCATTACATTTTAGG+AGG + chr7_3:20531991-20532010 None:intergenic 20.0%
! AAAATTGTGTAACCATAACA+TGG + chr7_3:20530793-20530812 None:intergenic 25.0%
!!! CTTTTAATTTTTGGCAGAAA+AGG - chr7_3:20530857-20530876 Msa1096280:CDS 25.0%
!!! TGACTTTTTAATTGGCAATT+GGG - chr7_3:20530902-20530921 Msa1096280:CDS 25.0%
!!! ATGAGTTTAAGAAAAGTGTT+TGG + chr7_3:20531074-20531093 None:intergenic 25.0%
!! AACATGAACATAGTTTTTGT+TGG - chr7_3:20531098-20531117 Msa1096280:CDS 25.0%
! AGTGGATAATAAGCAAATAA+GGG + chr7_3:20531153-20531172 None:intergenic 25.0%
! AAATGTATTGTATTATGGTG+TGG + chr7_3:20531305-20531324 None:intergenic 25.0%
! ACACCATAATACAATACATT+TGG - chr7_3:20531304-20531323 Msa1096280:intron 25.0%
! GATCCAAATGTATTGTATTA+TGG + chr7_3:20531310-20531329 None:intergenic 25.0%
! TCATTCTCATAGTAAATTGA+AGG + chr7_3:20531413-20531432 None:intergenic 25.0%
! TATGAGAATGATTCAGTTAT+AGG - chr7_3:20531422-20531441 Msa1096280:intron 25.0%
!! ATTTTATGTTCCAATGAGAA+AGG - chr7_3:20531490-20531509 Msa1096280:intron 25.0%
! GAAAAAGCCATATAAATATG+AGG - chr7_3:20531643-20531662 Msa1096280:intron 25.0%
! TTCTTCTCCTCATATTTATA+TGG + chr7_3:20531653-20531672 None:intergenic 25.0%
!!! ACTTTTTTAGCAAATGGAAA+AGG + chr7_3:20531833-20531852 None:intergenic 25.0%
!!! TTTGGAACTTTTTTAGCAAA+TGG + chr7_3:20531839-20531858 None:intergenic 25.0%
!!! TACTTGGAATGAGATTTTTT+TGG - chr7_3:20531907-20531926 Msa1096280:intron 25.0%
! AAAATTGTGTAACCATAACA+TGG + chr7_3:20530793-20530812 None:intergenic 25.0%
!!! CTTTTAATTTTTGGCAGAAA+AGG - chr7_3:20530857-20530876 Msa1096280:CDS 25.0%
!!! TGACTTTTTAATTGGCAATT+GGG - chr7_3:20530902-20530921 Msa1096280:CDS 25.0%
!!! ATGAGTTTAAGAAAAGTGTT+TGG + chr7_3:20531074-20531093 None:intergenic 25.0%
!! AACATGAACATAGTTTTTGT+TGG - chr7_3:20531098-20531117 Msa1096280:CDS 25.0%
! AGTGGATAATAAGCAAATAA+GGG + chr7_3:20531153-20531172 None:intergenic 25.0%
! AAATGTATTGTATTATGGTG+TGG + chr7_3:20531305-20531324 None:intergenic 25.0%
! ACACCATAATACAATACATT+TGG - chr7_3:20531304-20531323 Msa1096280:intron 25.0%
! GATCCAAATGTATTGTATTA+TGG + chr7_3:20531310-20531329 None:intergenic 25.0%
! TCATTCTCATAGTAAATTGA+AGG + chr7_3:20531413-20531432 None:intergenic 25.0%
! TATGAGAATGATTCAGTTAT+AGG - chr7_3:20531422-20531441 Msa1096280:intron 25.0%
!! ATTTTATGTTCCAATGAGAA+AGG - chr7_3:20531490-20531509 Msa1096280:intron 25.0%
! GAAAAAGCCATATAAATATG+AGG - chr7_3:20531643-20531662 Msa1096280:intron 25.0%
! TTCTTCTCCTCATATTTATA+TGG + chr7_3:20531653-20531672 None:intergenic 25.0%
!!! ACTTTTTTAGCAAATGGAAA+AGG + chr7_3:20531833-20531852 None:intergenic 25.0%
!!! TTTGGAACTTTTTTAGCAAA+TGG + chr7_3:20531839-20531858 None:intergenic 25.0%
!!! TACTTGGAATGAGATTTTTT+TGG - chr7_3:20531907-20531926 Msa1096280:intron 25.0%
! AAAAATTGAATGGTGGAGAT+TGG - chr7_3:20529937-20529956 Msa1096280:three_prime_UTR 30.0%
!! GTAATACATATGATTTGCTC+AGG - chr7_3:20530056-20530075 Msa1096280:CDS 30.0%
TTAGTAATTGAAACTGCTTG+TGG + chr7_3:20530575-20530594 None:intergenic 30.0%
ACGTAACATCCAATGAATTT+CGG - chr7_3:20530767-20530786 Msa1096280:CDS 30.0%
!! GTGACTTTTTAATTGGCAAT+TGG - chr7_3:20530901-20530920 Msa1096280:CDS 30.0%
ATGTTGTCCCATTATACAAA+GGG + chr7_3:20530944-20530963 None:intergenic 30.0%
! AAAGTGTTTGGTTCAAAAAC+TGG + chr7_3:20531062-20531081 None:intergenic 30.0%
CAGTGGATAATAAGCAAATA+AGG + chr7_3:20531154-20531173 None:intergenic 30.0%
!!! ATATATAGGTTTTGAAGCAG+TGG + chr7_3:20531171-20531190 None:intergenic 30.0%
GACTTGATTATGTTGTCATT+TGG - chr7_3:20531368-20531387 Msa1096280:CDS 30.0%
! TTATGTTGTCATTTGGTCAT+TGG - chr7_3:20531375-20531394 Msa1096280:CDS 30.0%
CCTCTCAATTATGGTATTAA+GGG + chr7_3:20531528-20531547 None:intergenic 30.0%
TCCTCTCAATTATGGTATTA+AGG + chr7_3:20531529-20531548 None:intergenic 30.0%
TACCATAATTGAGAGGAAAA+TGG - chr7_3:20531532-20531551 Msa1096280:intron 30.0%
! AACCATTTTCCTCTCAATTA+TGG + chr7_3:20531537-20531556 None:intergenic 30.0%
ATTGAGAGGAAAATGGTTAA+AGG - chr7_3:20531539-20531558 Msa1096280:intron 30.0%
TTGAGAGGAAAATGGTTAAA+GGG - chr7_3:20531540-20531559 Msa1096280:intron 30.0%
! TTTTCACCTACTCATTTTGA+AGG - chr7_3:20531590-20531609 Msa1096280:intron 30.0%
! GATAAGAAGTATGGAAATAG+AGG - chr7_3:20531694-20531713 Msa1096280:intron 30.0%
GGTGCTTGATATAACAAAAT+TGG - chr7_3:20531766-20531785 Msa1096280:intron 30.0%
! CAATCGTTTTGTACATACTT+TGG + chr7_3:20531857-20531876 None:intergenic 30.0%
ATCTCATTCCAAGTATCAAT+AGG + chr7_3:20531902-20531921 None:intergenic 30.0%
!!! TTTTTTGGAGATGATGAAGA+AGG - chr7_3:20531922-20531941 Msa1096280:intron 30.0%
!! TTTTTGGAGATGATGAAGAA+GGG - chr7_3:20531923-20531942 Msa1096280:intron 30.0%
!!! CTTACATTTTGGGATAATGA+AGG + chr7_3:20532024-20532043 None:intergenic 30.0%
! AAAAATTGAATGGTGGAGAT+TGG - chr7_3:20529937-20529956 Msa1096280:three_prime_UTR 30.0%
!! GTAATACATATGATTTGCTC+AGG - chr7_3:20530056-20530075 Msa1096280:CDS 30.0%
TTAGTAATTGAAACTGCTTG+TGG + chr7_3:20530575-20530594 None:intergenic 30.0%
ACGTAACATCCAATGAATTT+CGG - chr7_3:20530767-20530786 Msa1096280:CDS 30.0%
!! GTGACTTTTTAATTGGCAAT+TGG - chr7_3:20530901-20530920 Msa1096280:CDS 30.0%
ATGTTGTCCCATTATACAAA+GGG + chr7_3:20530944-20530963 None:intergenic 30.0%
! AAAGTGTTTGGTTCAAAAAC+TGG + chr7_3:20531062-20531081 None:intergenic 30.0%
CAGTGGATAATAAGCAAATA+AGG + chr7_3:20531154-20531173 None:intergenic 30.0%
!!! ATATATAGGTTTTGAAGCAG+TGG + chr7_3:20531171-20531190 None:intergenic 30.0%
GACTTGATTATGTTGTCATT+TGG - chr7_3:20531368-20531387 Msa1096280:CDS 30.0%
! TTATGTTGTCATTTGGTCAT+TGG - chr7_3:20531375-20531394 Msa1096280:CDS 30.0%
CCTCTCAATTATGGTATTAA+GGG + chr7_3:20531528-20531547 None:intergenic 30.0%
TCCTCTCAATTATGGTATTA+AGG + chr7_3:20531529-20531548 None:intergenic 30.0%
TACCATAATTGAGAGGAAAA+TGG - chr7_3:20531532-20531551 Msa1096280:intron 30.0%
! AACCATTTTCCTCTCAATTA+TGG + chr7_3:20531537-20531556 None:intergenic 30.0%
ATTGAGAGGAAAATGGTTAA+AGG - chr7_3:20531539-20531558 Msa1096280:intron 30.0%
TTGAGAGGAAAATGGTTAAA+GGG - chr7_3:20531540-20531559 Msa1096280:intron 30.0%
! TTTTCACCTACTCATTTTGA+AGG - chr7_3:20531590-20531609 Msa1096280:intron 30.0%
! GATAAGAAGTATGGAAATAG+AGG - chr7_3:20531694-20531713 Msa1096280:intron 30.0%
GGTGCTTGATATAACAAAAT+TGG - chr7_3:20531766-20531785 Msa1096280:intron 30.0%
! CAATCGTTTTGTACATACTT+TGG + chr7_3:20531857-20531876 None:intergenic 30.0%
ATCTCATTCCAAGTATCAAT+AGG + chr7_3:20531902-20531921 None:intergenic 30.0%
!!! TTTTTTGGAGATGATGAAGA+AGG - chr7_3:20531922-20531941 Msa1096280:intron 30.0%
!! TTTTTGGAGATGATGAAGAA+GGG - chr7_3:20531923-20531942 Msa1096280:intron 30.0%
!!! CTTACATTTTGGGATAATGA+AGG + chr7_3:20532024-20532043 None:intergenic 30.0%
!! AAAGTGTTGTAACACGTACT+TGG + chr7_3:20530002-20530021 None:intergenic 35.0%
!! AAAGTGTTGTAACACGTACT+TGG + chr7_3:20530002-20530021 None:intergenic 35.0%
TACGTCTACCAGTAAACATT+AGG - chr7_3:20530742-20530761 Msa1096280:CDS 35.0%
ACGTCTACCAGTAAACATTA+GGG - chr7_3:20530743-20530762 Msa1096280:CDS 35.0%
ATAACATGGCCGAAATTCAT+TGG + chr7_3:20530779-20530798 None:intergenic 35.0%
AATGAATTTCGGCCATGTTA+TGG - chr7_3:20530778-20530797 Msa1096280:CDS 35.0%
AAGTCACATGATTTCTCAAG+AGG + chr7_3:20530888-20530907 None:intergenic 35.0%
CATGTTGTCCCATTATACAA+AGG + chr7_3:20530945-20530964 None:intergenic 35.0%
GACAACATGTAATGAGATCA+GGG - chr7_3:20530956-20530975 Msa1096280:CDS 35.0%
AGTCAGAATTGCATTGTCAA+TGG - chr7_3:20530981-20531000 Msa1096280:CDS 35.0%
TTGGTTTCCATCTCCAATAT+AGG + chr7_3:20531025-20531044 None:intergenic 35.0%
! ATCAATCATATAGGCTCTGA+TGG - chr7_3:20531191-20531210 Msa1096280:intron 35.0%
! TCAATCATATAGGCTCTGAT+GGG - chr7_3:20531192-20531211 Msa1096280:intron 35.0%
GTCAAGTTTGCATTGTAAGA+AGG + chr7_3:20531230-20531249 None:intergenic 35.0%
ATGCAAACTTGACATCCTAT+TGG - chr7_3:20531237-20531256 Msa1096280:intron 35.0%
GTGATCAAAGAAGAAAGGAA+GGG - chr7_3:20531279-20531298 Msa1096280:intron 35.0%
TGGATCATGTAAATGAGAAG+TGG - chr7_3:20531324-20531343 Msa1096280:intron 35.0%
GGATCATGTAAATGAGAAGT+GGG - chr7_3:20531325-20531344 Msa1096280:intron 35.0%
GGCAAGTCATATAGATCAAA+TGG - chr7_3:20531346-20531365 Msa1096280:intron 35.0%
!!! GTCATTTGGTCATTGGTTTT+TGG - chr7_3:20531382-20531401 Msa1096280:CDS 35.0%
TTCCAATGAGAAAGGCTTTA+AGG - chr7_3:20531498-20531517 Msa1096280:intron 35.0%
ATCCTTAAAGCCTTTCTCAT+TGG + chr7_3:20531503-20531522 None:intergenic 35.0%
CCCTTAATACCATAATTGAG+AGG - chr7_3:20531525-20531544 Msa1096280:intron 35.0%
!!! TACTCATTTTGAAGGTGCTT+GGG - chr7_3:20531598-20531617 Msa1096280:intron 35.0%
TATGAGGAGAAGAAACTTGA+AGG - chr7_3:20531659-20531678 Msa1096280:intron 35.0%
GGAAGCTAAGATAAGAAGTA+TGG - chr7_3:20531685-20531704 Msa1096280:intron 35.0%
TACAAAACGATTGTACCCAT+TGG - chr7_3:20531864-20531883 Msa1096280:intron 35.0%
!! TTTTGGAGATGATGAAGAAG+GGG - chr7_3:20531924-20531943 Msa1096280:intron 35.0%
!! TTCATTACATTTTAGGAGGG+AGG + chr7_3:20531987-20532006 None:intergenic 35.0%
!! AAAGTGTTGTAACACGTACT+TGG + chr7_3:20530002-20530021 None:intergenic 35.0%
!! AAAGTGTTGTAACACGTACT+TGG + chr7_3:20530002-20530021 None:intergenic 35.0%
TACGTCTACCAGTAAACATT+AGG - chr7_3:20530742-20530761 Msa1096280:CDS 35.0%
ACGTCTACCAGTAAACATTA+GGG - chr7_3:20530743-20530762 Msa1096280:CDS 35.0%
ATAACATGGCCGAAATTCAT+TGG + chr7_3:20530779-20530798 None:intergenic 35.0%
AATGAATTTCGGCCATGTTA+TGG - chr7_3:20530778-20530797 Msa1096280:CDS 35.0%
AAGTCACATGATTTCTCAAG+AGG + chr7_3:20530888-20530907 None:intergenic 35.0%
CATGTTGTCCCATTATACAA+AGG + chr7_3:20530945-20530964 None:intergenic 35.0%
GACAACATGTAATGAGATCA+GGG - chr7_3:20530956-20530975 Msa1096280:CDS 35.0%
AGTCAGAATTGCATTGTCAA+TGG - chr7_3:20530981-20531000 Msa1096280:CDS 35.0%
TTGGTTTCCATCTCCAATAT+AGG + chr7_3:20531025-20531044 None:intergenic 35.0%
! ATCAATCATATAGGCTCTGA+TGG - chr7_3:20531191-20531210 Msa1096280:intron 35.0%
! TCAATCATATAGGCTCTGAT+GGG - chr7_3:20531192-20531211 Msa1096280:intron 35.0%
GTCAAGTTTGCATTGTAAGA+AGG + chr7_3:20531230-20531249 None:intergenic 35.0%
ATGCAAACTTGACATCCTAT+TGG - chr7_3:20531237-20531256 Msa1096280:intron 35.0%
GTGATCAAAGAAGAAAGGAA+GGG - chr7_3:20531279-20531298 Msa1096280:intron 35.0%
TGGATCATGTAAATGAGAAG+TGG - chr7_3:20531324-20531343 Msa1096280:intron 35.0%
GGATCATGTAAATGAGAAGT+GGG - chr7_3:20531325-20531344 Msa1096280:intron 35.0%
GGCAAGTCATATAGATCAAA+TGG - chr7_3:20531346-20531365 Msa1096280:intron 35.0%
!!! GTCATTTGGTCATTGGTTTT+TGG - chr7_3:20531382-20531401 Msa1096280:CDS 35.0%
TTCCAATGAGAAAGGCTTTA+AGG - chr7_3:20531498-20531517 Msa1096280:intron 35.0%
ATCCTTAAAGCCTTTCTCAT+TGG + chr7_3:20531503-20531522 None:intergenic 35.0%
CCCTTAATACCATAATTGAG+AGG - chr7_3:20531525-20531544 Msa1096280:intron 35.0%
!!! TACTCATTTTGAAGGTGCTT+GGG - chr7_3:20531598-20531617 Msa1096280:intron 35.0%
TATGAGGAGAAGAAACTTGA+AGG - chr7_3:20531659-20531678 Msa1096280:intron 35.0%
GGAAGCTAAGATAAGAAGTA+TGG - chr7_3:20531685-20531704 Msa1096280:intron 35.0%
TACAAAACGATTGTACCCAT+TGG - chr7_3:20531864-20531883 Msa1096280:intron 35.0%
!! TTTTGGAGATGATGAAGAAG+GGG - chr7_3:20531924-20531943 Msa1096280:intron 35.0%
!! TTCATTACATTTTAGGAGGG+AGG + chr7_3:20531987-20532006 None:intergenic 35.0%
GTGAAAACATGTCTCATGCA+TGG - chr7_3:20530175-20530194 Msa1096280:CDS 40.0%
CGTCTACCAGTAAACATTAG+GGG - chr7_3:20530744-20530763 Msa1096280:CDS 40.0%
TTACGTCCCCTAATGTTTAC+TGG + chr7_3:20530753-20530772 None:intergenic 40.0%
AATTGGGTTCATGACAAGAG+AGG - chr7_3:20530918-20530937 Msa1096280:CDS 40.0%
AAGAGAGGCCCTTTGTATAA+TGG - chr7_3:20530933-20530952 Msa1096280:CDS 40.0%
AGAGAGGCCCTTTGTATAAT+GGG - chr7_3:20530934-20530953 Msa1096280:CDS 40.0%
GGACAACATGTAATGAGATC+AGG - chr7_3:20530955-20530974 Msa1096280:CDS 40.0%
TTGCATTGTCAATGGAAGAC+CGG - chr7_3:20530989-20531008 Msa1096280:CDS 40.0%
CAATATAGGTAGCTTGAGTC+CGG + chr7_3:20531011-20531030 None:intergenic 40.0%
CAAGCTACCTATATTGGAGA+TGG - chr7_3:20531015-20531034 Msa1096280:CDS 40.0%
ACTGGAAGATCACACTCATT+TGG + chr7_3:20531044-20531063 None:intergenic 40.0%
TTGTTGGAGACTCTTTAGCT+AGG - chr7_3:20531114-20531133 Msa1096280:CDS 40.0%
AGCAAATAAGGGACTCTAGT+TGG + chr7_3:20531142-20531161 None:intergenic 40.0%
CACAAGAAATGGTGACCAAT+AGG + chr7_3:20531255-20531274 None:intergenic 40.0%
TTGGTCACCATTTCTTGTGA+AGG - chr7_3:20531256-20531275 Msa1096280:intron 40.0%
TGGTCACCATTTCTTGTGAA+GGG - chr7_3:20531257-20531276 Msa1096280:intron 40.0%
TGATCACCCTTCACAAGAAA+TGG + chr7_3:20531266-20531285 None:intergenic 40.0%
GAAGGGTGATCAAAGAAGAA+AGG - chr7_3:20531274-20531293 Msa1096280:intron 40.0%
GGTGATCAAAGAAGAAAGGA+AGG - chr7_3:20531278-20531297 Msa1096280:intron 40.0%
CAAGCACCTTCAAAATGAGT+AGG + chr7_3:20531599-20531618 None:intergenic 40.0%
!!! CTACTCATTTTGAAGGTGCT+TGG - chr7_3:20531597-20531616 Msa1096280:intron 40.0%
!!! TTTTGAAGGTGCTTGGGATA+AGG - chr7_3:20531604-20531623 Msa1096280:intron 40.0%
!! TTTGAAGGTGCTTGGGATAA+GGG - chr7_3:20531605-20531624 Msa1096280:intron 40.0%
GGAGAAGAAACTTGAAGGAA+TGG - chr7_3:20531664-20531683 Msa1096280:intron 40.0%
AGAGGAAGCTGAAAATGCTA+AGG - chr7_3:20531712-20531731 Msa1096280:intron 40.0%
TTCCAAGTATCAATAGGTCC+TGG + chr7_3:20531896-20531915 None:intergenic 40.0%
GTGAAAACATGTCTCATGCA+TGG - chr7_3:20530175-20530194 Msa1096280:CDS 40.0%
CGTCTACCAGTAAACATTAG+GGG - chr7_3:20530744-20530763 Msa1096280:CDS 40.0%
TTACGTCCCCTAATGTTTAC+TGG + chr7_3:20530753-20530772 None:intergenic 40.0%
AATTGGGTTCATGACAAGAG+AGG - chr7_3:20530918-20530937 Msa1096280:CDS 40.0%
AAGAGAGGCCCTTTGTATAA+TGG - chr7_3:20530933-20530952 Msa1096280:CDS 40.0%
AGAGAGGCCCTTTGTATAAT+GGG - chr7_3:20530934-20530953 Msa1096280:CDS 40.0%
GGACAACATGTAATGAGATC+AGG - chr7_3:20530955-20530974 Msa1096280:CDS 40.0%
TTGCATTGTCAATGGAAGAC+CGG - chr7_3:20530989-20531008 Msa1096280:CDS 40.0%
CAATATAGGTAGCTTGAGTC+CGG + chr7_3:20531011-20531030 None:intergenic 40.0%
CAAGCTACCTATATTGGAGA+TGG - chr7_3:20531015-20531034 Msa1096280:CDS 40.0%
ACTGGAAGATCACACTCATT+TGG + chr7_3:20531044-20531063 None:intergenic 40.0%
TTGTTGGAGACTCTTTAGCT+AGG - chr7_3:20531114-20531133 Msa1096280:CDS 40.0%
AGCAAATAAGGGACTCTAGT+TGG + chr7_3:20531142-20531161 None:intergenic 40.0%
CACAAGAAATGGTGACCAAT+AGG + chr7_3:20531255-20531274 None:intergenic 40.0%
TTGGTCACCATTTCTTGTGA+AGG - chr7_3:20531256-20531275 Msa1096280:intron 40.0%
TGGTCACCATTTCTTGTGAA+GGG - chr7_3:20531257-20531276 Msa1096280:intron 40.0%
TGATCACCCTTCACAAGAAA+TGG + chr7_3:20531266-20531285 None:intergenic 40.0%
GAAGGGTGATCAAAGAAGAA+AGG - chr7_3:20531274-20531293 Msa1096280:intron 40.0%
GGTGATCAAAGAAGAAAGGA+AGG - chr7_3:20531278-20531297 Msa1096280:intron 40.0%
CAAGCACCTTCAAAATGAGT+AGG + chr7_3:20531599-20531618 None:intergenic 40.0%
!!! CTACTCATTTTGAAGGTGCT+TGG - chr7_3:20531597-20531616 Msa1096280:intron 40.0%
!!! TTTTGAAGGTGCTTGGGATA+AGG - chr7_3:20531604-20531623 Msa1096280:intron 40.0%
!! TTTGAAGGTGCTTGGGATAA+GGG - chr7_3:20531605-20531624 Msa1096280:intron 40.0%
GGAGAAGAAACTTGAAGGAA+TGG - chr7_3:20531664-20531683 Msa1096280:intron 40.0%
AGAGGAAGCTGAAAATGCTA+AGG - chr7_3:20531712-20531731 Msa1096280:intron 40.0%
TTCCAAGTATCAATAGGTCC+TGG + chr7_3:20531896-20531915 None:intergenic 40.0%
TGCTCAGGTACTCATTGTTG+TGG - chr7_3:20530071-20530090 Msa1096280:CDS 45.0%
CTCTTTCGTGAAGTTTCCAC+CGG + chr7_3:20530636-20530655 None:intergenic 45.0%
CGGACTCAAGCTACCTATAT+TGG - chr7_3:20531009-20531028 Msa1096280:CDS 45.0%
! ATCATATAGGCTCTGATGGG+AGG - chr7_3:20531195-20531214 Msa1096280:intron 45.0%
TTGGCATTGTTGAGACCAGA+TGG - chr7_3:20531785-20531804 Msa1096280:intron 45.0%
ATGGTCATGCAGGAGCTTAT+AGG - chr7_3:20531804-20531823 Msa1096280:intron 45.0%
TGCCAGGACCTATTGATACT+TGG - chr7_3:20531891-20531910 Msa1096280:intron 45.0%
TGCTCAGGTACTCATTGTTG+TGG - chr7_3:20530071-20530090 Msa1096280:CDS 45.0%
CTCTTTCGTGAAGTTTCCAC+CGG + chr7_3:20530636-20530655 None:intergenic 45.0%
CGGACTCAAGCTACCTATAT+TGG - chr7_3:20531009-20531028 Msa1096280:CDS 45.0%
! ATCATATAGGCTCTGATGGG+AGG - chr7_3:20531195-20531214 Msa1096280:intron 45.0%
TTGGCATTGTTGAGACCAGA+TGG - chr7_3:20531785-20531804 Msa1096280:intron 45.0%
ATGGTCATGCAGGAGCTTAT+AGG - chr7_3:20531804-20531823 Msa1096280:intron 45.0%
TGCCAGGACCTATTGATACT+TGG - chr7_3:20531891-20531910 Msa1096280:intron 45.0%
GATTGGCATCATACCTCCTC+CGG - chr7_3:20529954-20529973 Msa1096280:three_prime_UTR 50.0%
CTCTTCTGTGGAGTTTCCAC+CGG + chr7_3:20529976-20529995 None:intergenic 50.0%
CGTACTTGGTTCCTCTTCTG+TGG + chr7_3:20529988-20530007 None:intergenic 50.0%
TTTCGTGAAGTTTCCACCGG+AGG + chr7_3:20530633-20530652 None:intergenic 50.0%
CGGTGGAAACTTCACGAAAG+AGG - chr7_3:20530634-20530653 Msa1096280:CDS 50.0%
! ATATAGGCTCTGATGGGAGG+TGG - chr7_3:20531198-20531217 Msa1096280:intron 50.0%
TTGAGACCAGATGGTCATGC+AGG - chr7_3:20531794-20531813 Msa1096280:intron 50.0%
TAAGCTCCTGCATGACCATC+TGG + chr7_3:20531803-20531822 None:intergenic 50.0%
GATTGGCATCATACCTCCTC+CGG - chr7_3:20529954-20529973 Msa1096280:three_prime_UTR 50.0%
CTCTTCTGTGGAGTTTCCAC+CGG + chr7_3:20529976-20529995 None:intergenic 50.0%
CGTACTTGGTTCCTCTTCTG+TGG + chr7_3:20529988-20530007 None:intergenic 50.0%
TTTCGTGAAGTTTCCACCGG+AGG + chr7_3:20530633-20530652 None:intergenic 50.0%
CGGTGGAAACTTCACGAAAG+AGG - chr7_3:20530634-20530653 Msa1096280:CDS 50.0%
! ATATAGGCTCTGATGGGAGG+TGG - chr7_3:20531198-20531217 Msa1096280:intron 50.0%
TTGAGACCAGATGGTCATGC+AGG - chr7_3:20531794-20531813 Msa1096280:intron 50.0%
TAAGCTCCTGCATGACCATC+TGG + chr7_3:20531803-20531822 None:intergenic 50.0%
TTCTGTGGAGTTTCCACCGG+AGG + chr7_3:20529973-20529992 None:intergenic 55.0%
CGGTGGAAACTCCACAGAAG+AGG - chr7_3:20529974-20529993 Msa1096280:three_prime_UTR 55.0%
GATGAGCATCAGACCACCTC+CGG - chr7_3:20530614-20530633 Msa1096280:CDS 55.0%
!! GAAGGTGCTTGGGATAAGGG+TGG - chr7_3:20531608-20531627 Msa1096280:intron 55.0%
! TGTACCCATTGGTGCTTGCC+AGG - chr7_3:20531875-20531894 Msa1096280:intron 55.0%
AGGTCCTGGCAAGCACCAAT+GGG + chr7_3:20531882-20531901 None:intergenic 55.0%
TAGGTCCTGGCAAGCACCAA+TGG + chr7_3:20531883-20531902 None:intergenic 55.0%
TTCTGTGGAGTTTCCACCGG+AGG + chr7_3:20529973-20529992 None:intergenic 55.0%
CGGTGGAAACTCCACAGAAG+AGG - chr7_3:20529974-20529993 Msa1096280:three_prime_UTR 55.0%
GATGAGCATCAGACCACCTC+CGG - chr7_3:20530614-20530633 Msa1096280:CDS 55.0%
!! GAAGGTGCTTGGGATAAGGG+TGG - chr7_3:20531608-20531627 Msa1096280:intron 55.0%
! TGTACCCATTGGTGCTTGCC+AGG - chr7_3:20531875-20531894 Msa1096280:intron 55.0%
AGGTCCTGGCAAGCACCAAT+GGG + chr7_3:20531882-20531901 None:intergenic 55.0%
TAGGTCCTGGCAAGCACCAA+TGG + chr7_3:20531883-20531902 None:intergenic 55.0%
TGGCATCATACCTCCTCCGG+TGG - chr7_3:20529957-20529976 Msa1096280:three_prime_UTR 60.0%
TGTGGAGTTTCCACCGGAGG+AGG + chr7_3:20529970-20529989 None:intergenic 60.0%
CGTGAAGTTTCCACCGGAGG+TGG + chr7_3:20530630-20530649 None:intergenic 60.0%
TGGCATCATACCTCCTCCGG+TGG - chr7_3:20529957-20529976 Msa1096280:three_prime_UTR 60.0%
TGTGGAGTTTCCACCGGAGG+AGG + chr7_3:20529970-20529989 None:intergenic 60.0%
CGTGAAGTTTCCACCGGAGG+TGG + chr7_3:20530630-20530649 None:intergenic 60.0%
GAGCATCAGACCACCTCCGG+TGG - chr7_3:20530617-20530636 Msa1096280:CDS 65.0%
GAGCATCAGACCACCTCCGG+TGG - chr7_3:20530617-20530636 Msa1096280:CDS 65.0%
Chromosome Type Strat End Strand Name
chr7_3 gene 20529918 20532095 20529918 ID=Msa1096280;Name=Msa1096280
chr7_3 mRNA 20529918 20532095 20529918 ID=Msa1096280-mRNA-1;Parent=Msa1096280;Name=Msa1096280-mRNA-1;_AED=0.15;_eAED=0.15;_QI=0|1|0.66|1|1|1|3|137|416
chr7_3 exon 20529918 20531139 20529918 ID=Msa1096280-mRNA-1:exon:4434;Parent=Msa1096280-mRNA-1
chr7_3 exon 20531351 20531431 20531351 ID=Msa1096280-mRNA-1:exon:4433;Parent=Msa1096280-mRNA-1
chr7_3 exon 20532011 20532095 20532011 ID=Msa1096280-mRNA-1:exon:4432;Parent=Msa1096280-mRNA-1
chr7_3 CDS 20532011 20532095 20532011 ID=Msa1096280-mRNA-1:cds;Parent=Msa1096280-mRNA-1
chr7_3 CDS 20531351 20531431 20531351 ID=Msa1096280-mRNA-1:cds;Parent=Msa1096280-mRNA-1
chr7_3 CDS 20530055 20531139 20530055 ID=Msa1096280-mRNA-1:cds;Parent=Msa1096280-mRNA-1
chr7_3 three_prime_UTR 20529918 20530054 20529918 ID=Msa1096280-mRNA-1:three_prime_utr;Parent=Msa1096280-mRNA-1
Gene Sequence

>Msa1096280

GCAGTTTCAATTATTAATGAAAAATTGAATGGTGGAGATTGGCATCATACCTCCTCCGGTGGAAACTCCACAGAAGAGGAACCAATTTCAATTACTAATAAAAAATTGAATGGTGGAGATGAGCATCAGACCACCTCCGGTGGAAACTTCACGAAAGAGGATCCAAAAAAGGAACAACCTCTTGAGAAATCATGTGACTTTTTAATTGGCAATTGGGTTCATGACAAGAGAGGCCCTTTGTATAATGGGACAACATGTAATGAGATCAGGGAAAGTCAGAATTGCATTGTCAATGGAAGACCGGACTCAAGCTACCTATATTGGAGATGGAAACCAAATGAGTGTGATCTTCCAGTTTTTGAACCAAACACTTTTCTTAAACTCATGAGCAACATGAACATAGTTTTTGTTGGAGACTCTTTAGCTAGGAACCAACTAGAGTCCCTTATTTGCTTATTATCCACTGCTTCAAAACCTATATATATCAATCATATAGGCTCTGATGGGAGGTGGTATTTTCCTTCTTACAATGCAAACTTGACATCCTATTGGTCACCATTTCTTGTGAAGGGTGATCAAAGAAGAAAGGAAGGGCCACACCATAATACAATACATTTGGATCATGTAAATGAGAAGTGGGCAAGTCATATAGATCAAATGGACTTGATTATGTTGTCATTTGGTCATTGGTTTTTGGACATTCCTTCAATTTACTATGAGAATGATTCAGTTATAGGTTGTTCAGTATGTCATGATTTTAAATCGAAATATAATGATATTGGATTTTATGTTCCAATGAGAAAGGCTTTAAGGATTGCCCTTAATACCATAATTGAGAGGAAAATGGTTAAAGGGAATGAAATTGATGTGATTGTGAGAACATTTTCACCTACTCATTTTGAAGGTGCTTGGGATAAGGGTGGTACTTGTTCAAAGAAAAAGCCATATAAATATGAGGAGAAGAAACTTGAAGGAATGGAAGCTAAGATAAGAAGTATGGAAATAGAGGAAGCTGAAAATGCTAAGGAAAAATCTAAACAAATTGGATTAAATTTGAAGGTGCTTGATATAACAAAATTGGCATTGTTGAGACCAGATGGTCATGCAGGAGCTTATAGGTTTCCTTTTCCATTTGCTAAAAAAGTTCCAAAGTATGTACAAAACGATTGTACCCATTGGTGCTTGCCAGGACCTATTGATACTTGGAATGAGATTTTTTTGGAGATGATGAAGAAGGGGAAGAACTATTAG
Protein sequence

>Msa1096280

AVSIINEKLNGGDWHHTSSGGNSTEEEPISITNKKLNGGDEHQTTSGGNFTKEDPKKEQPLEKSCDFLIGNWVHDKRGPLYNGTTCNEIRESQNCIVNGRPDSSYLYWRWKPNECDLPVFEPNTFLKLMSNMNIVFVGDSLARNQLESLICLLSTASKPIYINHIGSDGRWYFPSYNANLTSYWSPFLVKGDQRRKEGPHHNTIHLDHVNEKWASHIDQMDLIMLSFGHWFLDIPSIYYENDSVIGCSVCHDFKSKYNDIGFYVPMRKALRIALNTIIERKMVKGNEIDVIVRTFSPTHFEGAWDKGGTCSKKKPYKYEEKKLEGMEAKIRSMEIEEAENAKEKSKQIGLNLKVLDITKLALLRPDGHAGAYRFPFPFAKKVPKYVQNDCTHWCLPGPIDTWNEIFLEMMKKGKNY*