Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0994630 | XP_003619838.1 | 89.333 | 375 | 4 | 1 | 1 | 375 | 1 | 339 | 0.0 | 680 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0994630 | sp|Q8K157|GALM_MOUSE | 41.962 | 367 | 165 | 8 | 9 | 373 | 20 | 340 | 7.58e-91 | 279 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0994630 | G7KPT9 | 89.333 | 375 | 4 | 1 | 1 | 375 | 1 | 339 | 0.0 | 680 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0002490 | Msa0994630 | 0.800415 | 1.456923e-48 | -8.615850e-47 |
| Msa0110970 | Msa0994630 | 0.813497 | 2.484707e-51 | -8.615850e-47 |
| Msa0616220 | Msa0994630 | 0.800175 | 1.630583e-48 | -8.615850e-47 |
| Msa0623700 | Msa0994630 | 0.802841 | 4.633079e-49 | -8.615850e-47 |
| Msa0677290 | Msa0994630 | 0.805697 | 1.177722e-49 | -8.615850e-47 |
| Msa0680240 | Msa0994630 | 0.803100 | 4.094927e-49 | -8.615850e-47 |
| Msa0141620 | Msa0994630 | 0.800748 | 1.245776e-48 | -8.615850e-47 |
| Msa0402330 | Msa0994630 | 0.808381 | 3.184724e-50 | -8.615850e-47 |
| Msa0419820 | Msa0994630 | 0.802179 | 6.342509e-49 | -8.615850e-47 |
| Msa0436050 | Msa0994630 | 0.810318 | 1.223342e-50 | -8.615850e-47 |
| Msa0994630 | Msa1013400 | 0.803819 | 2.906157e-49 | -8.615850e-47 |
| Msa0994630 | Msa1066490 | 0.806811 | 6.861810e-50 | -8.615850e-47 |
| Msa0994630 | Msa1074810 | 0.825466 | 4.617180e-54 | -8.615850e-47 |
| Msa0994630 | Msa1091520 | 0.809752 | 1.620282e-50 | -8.615850e-47 |
| Msa0994630 | Msa1106700 | 0.804350 | 2.253695e-49 | -8.615850e-47 |
| Msa0994630 | Msa1126510 | 0.806524 | 7.888815e-50 | -8.615850e-47 |
| Msa0994630 | Msa1128710 | 0.804960 | 1.680531e-49 | -8.615850e-47 |
| Msa0994630 | Msa1134110 | 0.808762 | 2.641524e-50 | -8.615850e-47 |
| Msa0994630 | Msa1166860 | 0.801153 | 1.030080e-48 | -8.615850e-47 |
| Msa0994630 | Msa1254610 | 0.801843 | 7.435639e-49 | -8.615850e-47 |
| Msa0994630 | Msa1281190 | 0.806302 | 8.787911e-50 | -8.615850e-47 |
| Msa0994630 | Msa1392200 | 0.811701 | 6.137130e-51 | -8.615850e-47 |
| Msa0994630 | Msa1397810 | 0.804420 | 2.178705e-49 | -8.615850e-47 |
| Msa0264570 | Msa0994630 | 0.815814 | 7.621237e-52 | -8.615850e-47 |
| Msa0355270 | Msa0994630 | 0.808962 | 2.393433e-50 | -8.615850e-47 |
| Msa0574890 | Msa0994630 | 0.808592 | 2.870740e-50 | -8.615850e-47 |
| Msa0593650 | Msa0994630 | 0.813377 | 2.639411e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0994630 | MtrunA17_Chr6g0478501 | 89.333 | 375 | 4 | 1 | 1 | 375 | 1 | 339 | 0.0 | 680 |
| Msa0994630 | MtrunA17_Chr7g0217021 | 46.419 | 377 | 161 | 4 | 2 | 375 | 22 | 360 | 5.38e-113 | 333 |
| Msa0994630 | MtrunA17_Chr6g0452991 | 45.013 | 371 | 161 | 6 | 9 | 374 | 34 | 366 | 1.27e-102 | 308 |
| Msa0994630 | MtrunA17_Chr4g0060521 | 42.781 | 374 | 168 | 5 | 2 | 372 | 25 | 355 | 7.03e-102 | 305 |
| Msa0994630 | MtrunA17_Chr6g0452971 | 45.430 | 372 | 160 | 6 | 9 | 375 | 34 | 367 | 9.22e-102 | 305 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0994630 | AT3G17940.1 | 67.021 | 376 | 85 | 4 | 1 | 373 | 1 | 340 | 0.0 | 511 |
| Msa0994630 | AT3G47800.1 | 45.652 | 368 | 160 | 3 | 6 | 373 | 29 | 356 | 9.50e-105 | 313 |
| Msa0994630 | AT5G15140.1 | 42.742 | 372 | 173 | 4 | 3 | 373 | 155 | 487 | 6.27e-98 | 300 |
| Msa0994630 | AT3G01260.1 | 31.720 | 372 | 189 | 8 | 4 | 373 | 115 | 423 | 5.83e-50 | 173 |
Find 119 sgRNAs with CRISPR-Local
Find 175 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACATGTTCTGCTTATTATTA+TGG | 0.189358 | 6_4:+69736259 | Msa0994630:three_prime_UTR |
| AAAGGTCTAGCTCCTTATTT+TGG | 0.241274 | 6_4:+69734935 | Msa0994630:CDS |
| TCCTAGTCCAACTTGATTAA+TGG | 0.246604 | 6_4:-69735880 | None:intergenic |
| TTCGGTTTGTTTACTGCATC+AGG | 0.250942 | 6_4:-69736119 | None:intergenic |
| CCCACAATGCAGCCAAAATA+AGG | 0.261596 | 6_4:-69734947 | None:intergenic |
| TGCAGTATGATGTAACATTT+AGG | 0.277266 | 6_4:-69736396 | None:intergenic |
| CAGCTCCTTGTTACCAATCT+TGG | 0.291278 | 6_4:+69733867 | Msa0994630:CDS |
| ATCACCTCTTTCTCTGTTCC+TGG | 0.292598 | 6_4:+69733897 | Msa0994630:CDS |
| TGAGGCATGCTGCAAAAGTT+AGG | 0.325997 | 6_4:+69735949 | Msa0994630:CDS |
| TGGATACCATGGAGAGTGTT+TGG | 0.329334 | 6_4:-69735046 | None:intergenic |
| TTAAGTACCCTTGAACTTGA+TGG | 0.335877 | 6_4:-69735975 | None:intergenic |
| ATGACTTGAGGGATTAGATT+TGG | 0.348177 | 6_4:+69736480 | Msa0994630:three_prime_UTR |
| GGTAAAGGAGGAGCTGTATA+TGG | 0.349406 | 6_4:+69736059 | Msa0994630:CDS |
| ACTTAGCTCAGCATAGCTAT+TGG | 0.352226 | 6_4:+69735697 | Msa0994630:CDS |
| TTCTCTGTTCCTGGCAAAGA+TGG | 0.363005 | 6_4:+69733906 | Msa0994630:CDS |
| ACAACAATGGATGGAAAATT+CGG | 0.365700 | 6_4:-69736137 | None:intergenic |
| GGATACCATGGAGAGTGTTT+GGG | 0.371971 | 6_4:-69735045 | None:intergenic |
| GTGTTGTCCGATGTTGTTCT+TGG | 0.379740 | 6_4:+69734039 | Msa0994630:CDS |
| TGACTCTGTTGAATCCTATC+AGG | 0.383257 | 6_4:+69734065 | Msa0994630:CDS |
| TTCGACTGAATAAACATTGT+TGG | 0.386434 | 6_4:+69736202 | Msa0994630:exon |
| AATTATGTCGACAATGTAAC+TGG | 0.387537 | 6_4:+69736038 | Msa0994630:CDS |
| TCTTTCTTCAATTCATTCAA+TGG | 0.387886 | 6_4:+69733794 | Msa0994630:exon |
| TGGATTAGTTCATACCTGAT+AGG | 0.393032 | 6_4:-69734079 | None:intergenic |
| TAAACTTTCCATTCTTAATC+CGG | 0.397743 | 6_4:-69734982 | None:intergenic |
| CTCATATTTGATGGTGATCA+AGG | 0.408086 | 6_4:-69734538 | None:intergenic |
| TCTATCGGACAAGGTTATCC+TGG | 0.408757 | 6_4:+69735579 | Msa0994630:intron |
| CAAATTTCAGGTGGAAATGT+TGG | 0.409418 | 6_4:+69735235 | Msa0994630:intron |
| CCATCCATTGTTGTTAAACC+TGG | 0.410103 | 6_4:+69736146 | Msa0994630:CDS |
| AACTTAGCTGGCCATAGCTC+AGG | 0.410334 | 6_4:+69735720 | Msa0994630:CDS |
| CGACCATTCGATTAAGATAT+CGG | 0.417841 | 6_4:+69735752 | Msa0994630:CDS |
| TTAGATAGTGGTCGCAATAT+CGG | 0.423833 | 6_4:+69734497 | Msa0994630:intron |
| ATTAAGAATGTTACGTGTGT+TGG | 0.433281 | 6_4:-69733680 | None:intergenic |
| GGCACGGTGTTCTGATCAAC+AGG | 0.440325 | 6_4:-69735789 | None:intergenic |
| TTCTCAGATGTGAAATCAAA+AGG | 0.445237 | 6_4:-69735843 | None:intergenic |
| ATCAAAAGGTGTACCCTTCA+CGG | 0.447345 | 6_4:-69735829 | None:intergenic |
| TCATACTTAAAAGTAATTGA+TGG | 0.450482 | 6_4:-69735307 | None:intergenic |
| AAATGTTGGGTTTGATAAGA+AGG | 0.451611 | 6_4:+69735249 | Msa0994630:CDS |
| AAATTTCAGGTGGAAATGTT+GGG | 0.453815 | 6_4:+69735236 | Msa0994630:intron |
| TTGTTGAGTTCAAAGATCTC+AGG | 0.457448 | 6_4:-69733834 | None:intergenic |
| GGTGATAGTGCAACCAAGAT+TGG | 0.457727 | 6_4:-69733880 | None:intergenic |
| AATGGAAAGTTTACACTTGA+CGG | 0.464325 | 6_4:+69734992 | Msa0994630:CDS |
| TTGGGTTTGATAAGAAGGTA+TGG | 0.467471 | 6_4:+69735254 | Msa0994630:CDS |
| AATAAACATTGTTGGAGAGT+TGG | 0.471083 | 6_4:+69736210 | Msa0994630:exon |
| ATGGAAAGTTTACACTTGAC+GGG | 0.473267 | 6_4:+69734993 | Msa0994630:CDS |
| TTTAAGTATGACAGTCATGA+TGG | 0.474349 | 6_4:+69735319 | Msa0994630:CDS |
| TGTAATCCAGCATGACTTGA+GGG | 0.479212 | 6_4:+69736469 | Msa0994630:three_prime_UTR |
| ACCGGATCGCTCATATTTGA+TGG | 0.479877 | 6_4:-69734547 | None:intergenic |
| CTATCGGACAAGGTTATCCT+GGG | 0.481061 | 6_4:+69735580 | Msa0994630:intron |
| GAATGCTGATACTTCTCGCC+AGG | 0.481070 | 6_4:-69736164 | None:intergenic |
| CATAGCTATTGGAACTTAGC+TGG | 0.485230 | 6_4:+69735708 | Msa0994630:CDS |
| TTGTGTCTCGAGACATAATC+CGG | 0.485479 | 6_4:-69736090 | None:intergenic |
| TTGTGGGTCGGGTTGCAAAC+CGG | 0.486793 | 6_4:+69734963 | Msa0994630:CDS |
| TTAGGGATCCATCAAGTTCA+AGG | 0.489196 | 6_4:+69735967 | Msa0994630:CDS |
| CCAGTATAAAATTGCACACC+AGG | 0.492670 | 6_4:-69736014 | None:intergenic |
| GATCAGAACACCGTGCCAAC+CGG | 0.493603 | 6_4:+69735795 | Msa0994630:CDS |
| CATCATACTGCAAATTGAAT+CGG | 0.499557 | 6_4:+69736407 | Msa0994630:three_prime_UTR |
| GAGGCATGCTGCAAAAGTTA+GGG | 0.503860 | 6_4:+69735950 | Msa0994630:CDS |
| TCTAATCCCTCAAGTCATGC+TGG | 0.506325 | 6_4:-69736475 | None:intergenic |
| GTCGACAATGTAACTGGTAA+AGG | 0.509535 | 6_4:+69736044 | Msa0994630:CDS |
| CACGATTTCACCGGTTGGCA+CGG | 0.511533 | 6_4:-69735805 | None:intergenic |
| GACAGTCATGATGGAGAGGA+AGG | 0.521046 | 6_4:+69735328 | Msa0994630:CDS |
| GAGAGAGAACCATCTTTGCC+AGG | 0.526221 | 6_4:-69733915 | None:intergenic |
| ATTGAATGAATTGAAGAAAG+AGG | 0.528748 | 6_4:-69733792 | None:intergenic |
| GTGTTTGGGGCTTTGTTGAG+AGG | 0.528867 | 6_4:-69735031 | None:intergenic |
| GTTGCAAACCGGATTAAGAA+TGG | 0.529417 | 6_4:+69734974 | Msa0994630:CDS |
| AAATTGCACACCAGGTGCAT+TGG | 0.534895 | 6_4:-69736006 | None:intergenic |
| TCACCTCAAGCACGACTATG+AGG | 0.535838 | 6_4:+69735631 | Msa0994630:CDS |
| TCAAAAGGTGTACCCTTCAC+GGG | 0.537264 | 6_4:-69735828 | None:intergenic |
| CTTCACGGGCACGATTTCAC+CGG | 0.537634 | 6_4:-69735814 | None:intergenic |
| CACAATTACGTGCTTGATTG+TGG | 0.539060 | 6_4:+69735909 | Msa0994630:CDS |
| CGGTGAAATCGTGCCCGTGA+AGG | 0.542994 | 6_4:+69735815 | Msa0994630:CDS |
| TTCTTCAATTCATTCAATGG+CGG | 0.544296 | 6_4:+69733797 | Msa0994630:exon |
| TTCACATCTGAGAAGAGAAT+AGG | 0.544822 | 6_4:+69735852 | Msa0994630:CDS |
| ACCATCAAATATGAGCGATC+CGG | 0.546294 | 6_4:+69734546 | Msa0994630:CDS |
| GGTGACACCATTAATCAAGT+TGG | 0.549042 | 6_4:+69735873 | Msa0994630:CDS |
| GTCACACTCTCTCTATCTAT+CGG | 0.552807 | 6_4:-69733707 | None:intergenic |
| CGAGTATATTCCCTGAGCTA+TGG | 0.556634 | 6_4:-69735731 | None:intergenic |
| ATGGTTTAGAACATGAACTC+TGG | 0.557119 | 6_4:+69736278 | Msa0994630:three_prime_UTR |
| GCTGTATATGGAAAGCATGC+CGG | 0.559930 | 6_4:+69736071 | Msa0994630:CDS |
| CACAATCAAGCACGTAATTG+TGG | 0.563084 | 6_4:-69735908 | None:intergenic |
| GATTGTGGTGAAGAGAAAGC+AGG | 0.568438 | 6_4:+69735924 | Msa0994630:CDS |
| GTGAAGAGAAAGCAGGTTTG+AGG | 0.571120 | 6_4:+69735931 | Msa0994630:CDS |
| TTGAATGAATTGAAGAAAGA+GGG | 0.573842 | 6_4:-69733791 | None:intergenic |
| CCAGGTTTAACAACAATGGA+TGG | 0.575567 | 6_4:-69736146 | None:intergenic |
| TGAGCTAAGTTAATGATGGT+TGG | 0.577438 | 6_4:-69735684 | None:intergenic |
| GTTCAAGGGTACTTAACTTG+TGG | 0.578336 | 6_4:+69735982 | Msa0994630:CDS |
| ACGGGCACGATTTCACCGGT+TGG | 0.578736 | 6_4:-69735810 | None:intergenic |
| TCGGTTTGTTTACTGCATCA+GGG | 0.578786 | 6_4:-69736118 | None:intergenic |
| GGTGAAATCGTGCCCGTGAA+GGG | 0.579874 | 6_4:+69735816 | Msa0994630:CDS |
| TGGGTTTGATAAGAAGGTAT+GGG | 0.583325 | 6_4:+69735255 | Msa0994630:CDS |
| TTTGCCAGGAACAGAGAAAG+AGG | 0.584847 | 6_4:-69733901 | None:intergenic |
| AACATGACCACAATTGAGAC+CGG | 0.587416 | 6_4:-69734565 | None:intergenic |
| ATGTAATCCAGCATGACTTG+AGG | 0.588022 | 6_4:+69736468 | Msa0994630:three_prime_UTR |
| CTCGCCAGGTTTAACAACAA+TGG | 0.592694 | 6_4:-69736150 | None:intergenic |
| GAGCGATCCGGTCTCAATTG+TGG | 0.593533 | 6_4:+69734558 | Msa0994630:CDS |
| TGCAACCAAGATTGGTAACA+AGG | 0.596737 | 6_4:-69733872 | None:intergenic |
| GAGCCTCATAGTCGTGCTTG+AGG | 0.598141 | 6_4:-69735634 | None:intergenic |
| ACTTAGCTGGCCATAGCTCA+GGG | 0.598357 | 6_4:+69735721 | Msa0994630:CDS |
| GATACCATGGAGAGTGTTTG+GGG | 0.598375 | 6_4:-69735044 | None:intergenic |
| AAAGCCCCAAACACTCTCCA+TGG | 0.598618 | 6_4:+69735040 | Msa0994630:CDS |
| TAGCCGATATCTTAATCGAA+TGG | 0.598641 | 6_4:-69735755 | None:intergenic |
| ATGCTGAGCTAAGTTAATGA+TGG | 0.598911 | 6_4:-69735688 | None:intergenic |
| GCAGTGACAGTGATGTCCCC+AGG | 0.601518 | 6_4:-69735597 | None:intergenic |
| TTACGTGTGTTGGCGTTACG+AGG | 0.607434 | 6_4:-69733670 | None:intergenic |
| AACTTGTGGACCAATGCACC+TGG | 0.609970 | 6_4:+69735996 | Msa0994630:CDS |
| CACGACTATGAGGCTCGACA+TGG | 0.609982 | 6_4:+69735641 | Msa0994630:CDS |
| GAGGCTCGACATGGAAGGAG+TGG | 0.615329 | 6_4:+69735650 | Msa0994630:CDS |
| TAGGGATCCATCAAGTTCAA+GGG | 0.616452 | 6_4:+69735968 | Msa0994630:CDS |
| GAGATCTTTGAACTCAACAA+TGG | 0.628918 | 6_4:+69733837 | Msa0994630:CDS |
| GTATGACAGTCATGATGGAG+AGG | 0.634397 | 6_4:+69735324 | Msa0994630:CDS |
| ACTATGAGGCTCGACATGGA+AGG | 0.635161 | 6_4:+69735645 | Msa0994630:CDS |
| ATTGGTAACAAGGAGCTGCA+TGG | 0.644127 | 6_4:-69733862 | None:intergenic |
| GTCAAGGCCAAGAACAACAT+CGG | 0.644395 | 6_4:-69734046 | None:intergenic |
| GACAATGTAACTGGTAAAGG+AGG | 0.651793 | 6_4:+69736047 | Msa0994630:CDS |
| GATAGGATTCAACAGAGTCA+AGG | 0.652231 | 6_4:-69734062 | None:intergenic |
| ACCATTAATCAAGTTGGACT+AGG | 0.655498 | 6_4:+69735879 | Msa0994630:CDS |
| GGATTATGTCTCGAGACACA+AGG | 0.664274 | 6_4:+69736092 | Msa0994630:CDS |
| TGGAAAGTTTACACTTGACG+GGG | 0.691095 | 6_4:+69734994 | Msa0994630:CDS |
| TATCGGACAAGGTTATCCTG+GGG | 0.702551 | 6_4:+69735581 | Msa0994630:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAAAGATATTTTTTTTTGTT+TGG | - | chr6_4:69734102-69734121 | None:intergenic | 10.0% |
| !!! | TACAATATTTTCTTTTGATA+TGG | + | chr6_4:69733986-69734005 | Msa0994630:intron | 15.0% |
| !!! | AAAAAATATCTTTTTGTGAT+TGG | + | chr6_4:69734108-69734127 | Msa0994630:intron | 15.0% |
| !!! | AAAAATATCTTTTTGTGATT+GGG | + | chr6_4:69734109-69734128 | Msa0994630:intron | 15.0% |
| !!! | GTATTTACAGTTTTAAATAT+AGG | - | chr6_4:69734680-69734699 | None:intergenic | 15.0% |
| !!! | ATAAGGTAGAATTTTGAAAA+GGG | - | chr6_4:69734163-69734182 | None:intergenic | 20.0% |
| !!! | AATAAGGTAGAATTTTGAAA+AGG | - | chr6_4:69734164-69734183 | None:intergenic | 20.0% |
| !! | AATGTTGAAAACTAGAAATA+AGG | - | chr6_4:69734180-69734199 | None:intergenic | 20.0% |
| !! | GATGTACTTGAATATAAAAA+AGG | + | chr6_4:69735277-69735296 | Msa0994630:CDS | 20.0% |
| !! | TCATACTTAAAAGTAATTGA+TGG | - | chr6_4:69735310-69735329 | None:intergenic | 20.0% |
| !! | TCGAATACTTAAAAATGAAA+GGG | - | chr6_4:69735373-69735392 | None:intergenic | 20.0% |
| !! | TTCGAATACTTAAAAATGAA+AGG | - | chr6_4:69735374-69735393 | None:intergenic | 20.0% |
| !! | GAAAACAAATATCAGATTAA+AGG | - | chr6_4:69735561-69735580 | None:intergenic | 20.0% |
| !!! | ATCTGATATTTGTTTTCTAT+CGG | + | chr6_4:69735564-69735583 | Msa0994630:intron | 20.0% |
| ! | TTGAATGAATTGAAGAAAGA+GGG | - | chr6_4:69733794-69733813 | None:intergenic | 25.0% |
| ! | ATTGAATGAATTGAAGAAAG+AGG | - | chr6_4:69733795-69733814 | None:intergenic | 25.0% |
| ! | TCTTTCTTCAATTCATTCAA+TGG | + | chr6_4:69733794-69733813 | Msa0994630:exon | 25.0% |
| !!! | TTCTTTTGATATGGTAATGA+TGG | + | chr6_4:69733995-69734014 | Msa0994630:intron | 25.0% |
| !!! | AATGTGTAGTTTTTAGTTTC+TGG | + | chr6_4:69734861-69734880 | Msa0994630:intron | 25.0% |
| ! | TAAACTTTCCATTCTTAATC+CGG | - | chr6_4:69734985-69735004 | None:intergenic | 25.0% |
| ! | AAGACTATTCATTCATAGAA+TGG | - | chr6_4:69735069-69735088 | None:intergenic | 25.0% |
| ! | TTTATAATCAAGCACTTTGT+TGG | - | chr6_4:69735136-69735155 | None:intergenic | 25.0% |
| ! | CAAATATCAGATTAAAGGAA+TGG | - | chr6_4:69735556-69735575 | None:intergenic | 25.0% |
| ! | ACATGTTCTGCTTATTATTA+TGG | + | chr6_4:69736259-69736278 | Msa0994630:three_prime_UTR | 25.0% |
| ATTAAGAATGTTACGTGTGT+TGG | - | chr6_4:69733683-69733702 | None:intergenic | 30.0% | |
| TTCTTCAATTCATTCAATGG+CGG | + | chr6_4:69733797-69733816 | Msa0994630:exon | 30.0% | |
| !!! | TGGTTTTGTTTGTAACATGA+AGG | + | chr6_4:69734015-69734034 | Msa0994630:intron | 30.0% |
| ! | TCACCGTCTCAAAATTTTAT+CGG | + | chr6_4:69734343-69734362 | Msa0994630:intron | 30.0% |
| !! | TGTCCGATAAAATTTTGAGA+CGG | - | chr6_4:69734349-69734368 | None:intergenic | 30.0% |
| AATGGAAAGTTTACACTTGA+CGG | + | chr6_4:69734992-69735011 | Msa0994630:CDS | 30.0% | |
| AGCTAGTGAAGATCATAAAT+TGG | - | chr6_4:69735197-69735216 | None:intergenic | 30.0% | |
| ! | AAATTTCAGGTGGAAATGTT+GGG | + | chr6_4:69735236-69735255 | Msa0994630:intron | 30.0% |
| AAATGTTGGGTTTGATAAGA+AGG | + | chr6_4:69735249-69735268 | Msa0994630:CDS | 30.0% | |
| TTTAAGTATGACAGTCATGA+TGG | + | chr6_4:69735319-69735338 | Msa0994630:CDS | 30.0% | |
| CTTAAAAATGAAAGGGAAAG+AGG | - | chr6_4:69735366-69735385 | None:intergenic | 30.0% | |
| !! | TATTTGTTTTCTATCGGACA+AGG | + | chr6_4:69735570-69735589 | Msa0994630:intron | 30.0% |
| TTCTCAGATGTGAAATCAAA+AGG | - | chr6_4:69735846-69735865 | None:intergenic | 30.0% | |
| AATTATGTCGACAATGTAAC+TGG | + | chr6_4:69736038-69736057 | Msa0994630:CDS | 30.0% | |
| ACAACAATGGATGGAAAATT+CGG | - | chr6_4:69736140-69736159 | None:intergenic | 30.0% | |
| TTCGACTGAATAAACATTGT+TGG | + | chr6_4:69736202-69736221 | Msa0994630:exon | 30.0% | |
| AATAAACATTGTTGGAGAGT+TGG | + | chr6_4:69736210-69736229 | Msa0994630:exon | 30.0% | |
| TGCAGTATGATGTAACATTT+AGG | - | chr6_4:69736399-69736418 | None:intergenic | 30.0% | |
| CATCATACTGCAAATTGAAT+CGG | + | chr6_4:69736407-69736426 | Msa0994630:three_prime_UTR | 30.0% | |
| TTGTTGAGTTCAAAGATCTC+AGG | - | chr6_4:69733837-69733856 | None:intergenic | 35.0% | |
| GAGATCTTTGAACTCAACAA+TGG | + | chr6_4:69733837-69733856 | Msa0994630:CDS | 35.0% | |
| !! | TGGATTAGTTCATACCTGAT+AGG | - | chr6_4:69734082-69734101 | None:intergenic | 35.0% |
| CAGAAGTCTTAATCTTGTGA+TGG | + | chr6_4:69734472-69734491 | Msa0994630:intron | 35.0% | |
| !!! | CTTGTGATGGTTTTAGATAG+TGG | + | chr6_4:69734485-69734504 | Msa0994630:intron | 35.0% |
| ! | TTAGATAGTGGTCGCAATAT+CGG | + | chr6_4:69734497-69734516 | Msa0994630:intron | 35.0% |
| !! | CTCATATTTGATGGTGATCA+AGG | - | chr6_4:69734541-69734560 | None:intergenic | 35.0% |
| !! | AAAGGTCTAGCTCCTTATTT+TGG | + | chr6_4:69734935-69734954 | Msa0994630:CDS | 35.0% |
| ATGGAAAGTTTACACTTGAC+GGG | + | chr6_4:69734993-69735012 | Msa0994630:CDS | 35.0% | |
| CATTCATAGAATGGATACCA+TGG | - | chr6_4:69735060-69735079 | None:intergenic | 35.0% | |
| CTGAAATTTGGACACATATC+AGG | - | chr6_4:69735225-69735244 | None:intergenic | 35.0% | |
| CTGATATGTGTCCAAATTTC+AGG | + | chr6_4:69735223-69735242 | Msa0994630:intron | 35.0% | |
| ATATGTGTCCAAATTTCAGG+TGG | + | chr6_4:69735226-69735245 | Msa0994630:intron | 35.0% | |
| CAACATTTCCACCTGAAATT+TGG | - | chr6_4:69735237-69735256 | None:intergenic | 35.0% | |
| ! | CAAATTTCAGGTGGAAATGT+TGG | + | chr6_4:69735235-69735254 | Msa0994630:intron | 35.0% |
| TTGGGTTTGATAAGAAGGTA+TGG | + | chr6_4:69735254-69735273 | Msa0994630:CDS | 35.0% | |
| ! | TGGGTTTGATAAGAAGGTAT+GGG | + | chr6_4:69735255-69735274 | Msa0994630:CDS | 35.0% |
| TGAGCTAAGTTAATGATGGT+TGG | - | chr6_4:69735687-69735706 | None:intergenic | 35.0% | |
| ATGCTGAGCTAAGTTAATGA+TGG | - | chr6_4:69735691-69735710 | None:intergenic | 35.0% | |
| CGACCATTCGATTAAGATAT+CGG | + | chr6_4:69735752-69735771 | Msa0994630:CDS | 35.0% | |
| TAGCCGATATCTTAATCGAA+TGG | - | chr6_4:69735758-69735777 | None:intergenic | 35.0% | |
| TTCACATCTGAGAAGAGAAT+AGG | + | chr6_4:69735852-69735871 | Msa0994630:CDS | 35.0% | |
| !! | ACCATTAATCAAGTTGGACT+AGG | + | chr6_4:69735879-69735898 | Msa0994630:CDS | 35.0% |
| TCCTAGTCCAACTTGATTAA+TGG | - | chr6_4:69735883-69735902 | None:intergenic | 35.0% | |
| TTAAGTACCCTTGAACTTGA+TGG | - | chr6_4:69735978-69735997 | None:intergenic | 35.0% | |
| ! | ATGGTTTAGAACATGAACTC+TGG | + | chr6_4:69736278-69736297 | Msa0994630:three_prime_UTR | 35.0% |
| ATGACTTGAGGGATTAGATT+TGG | + | chr6_4:69736480-69736499 | Msa0994630:three_prime_UTR | 35.0% | |
| GTCACACTCTCTCTATCTAT+CGG | - | chr6_4:69733710-69733729 | None:intergenic | 40.0% | |
| ! | TGCAACCAAGATTGGTAACA+AGG | - | chr6_4:69733875-69733894 | None:intergenic | 40.0% |
| GATAGGATTCAACAGAGTCA+AGG | - | chr6_4:69734065-69734084 | None:intergenic | 40.0% | |
| TGACTCTGTTGAATCCTATC+AGG | + | chr6_4:69734065-69734084 | Msa0994630:CDS | 40.0% | |
| ACTGACACAAACACTAGACA+CGG | - | chr6_4:69734375-69734394 | None:intergenic | 40.0% | |
| GTGATTGCGATATGTCTCTA+AGG | + | chr6_4:69734446-69734465 | Msa0994630:intron | 40.0% | |
| ACCATCAAATATGAGCGATC+CGG | + | chr6_4:69734546-69734565 | Msa0994630:CDS | 40.0% | |
| AACATGACCACAATTGAGAC+CGG | - | chr6_4:69734568-69734587 | None:intergenic | 40.0% | |
| TTATATCGCAGCTCATATCG+CGG | + | chr6_4:69734610-69734629 | Msa0994630:intron | 40.0% | |
| GTCGCAATTACGATTGTGAA+CGG | + | chr6_4:69734775-69734794 | Msa0994630:intron | 40.0% | |
| !! | GTGGTTTGTTACAAGCAGAA+AGG | + | chr6_4:69734917-69734936 | Msa0994630:intron | 40.0% |
| !!! | TCCTTATTTTGGCTGCATTG+TGG | + | chr6_4:69734946-69734965 | Msa0994630:CDS | 40.0% |
| !!! | CCTTATTTTGGCTGCATTGT+GGG | + | chr6_4:69734947-69734966 | Msa0994630:CDS | 40.0% |
| GTTGCAAACCGGATTAAGAA+TGG | + | chr6_4:69734974-69734993 | Msa0994630:CDS | 40.0% | |
| TGGAAAGTTTACACTTGACG+GGG | + | chr6_4:69734994-69735013 | Msa0994630:CDS | 40.0% | |
| ! | GCACTGACACTTCATATTGA+AGG | + | chr6_4:69735401-69735420 | Msa0994630:intron | 40.0% |
| TGCAAGCAATGACAATGACA+CGG | - | chr6_4:69735519-69735538 | None:intergenic | 40.0% | |
| ACTTAGCTCAGCATAGCTAT+TGG | + | chr6_4:69735697-69735716 | Msa0994630:CDS | 40.0% | |
| CATAGCTATTGGAACTTAGC+TGG | + | chr6_4:69735708-69735727 | Msa0994630:CDS | 40.0% | |
| ! | ATCAAAAGGTGTACCCTTCA+CGG | - | chr6_4:69735832-69735851 | None:intergenic | 40.0% |
| GGTGACACCATTAATCAAGT+TGG | + | chr6_4:69735873-69735892 | Msa0994630:CDS | 40.0% | |
| CACAATCAAGCACGTAATTG+TGG | - | chr6_4:69735911-69735930 | None:intergenic | 40.0% | |
| CACAATTACGTGCTTGATTG+TGG | + | chr6_4:69735909-69735928 | Msa0994630:CDS | 40.0% | |
| TTAGGGATCCATCAAGTTCA+AGG | + | chr6_4:69735967-69735986 | Msa0994630:CDS | 40.0% | |
| TAGGGATCCATCAAGTTCAA+GGG | + | chr6_4:69735968-69735987 | Msa0994630:CDS | 40.0% | |
| !! | GTTCAAGGGTACTTAACTTG+TGG | + | chr6_4:69735982-69736001 | Msa0994630:CDS | 40.0% |
| CCAGTATAAAATTGCACACC+AGG | - | chr6_4:69736017-69736036 | None:intergenic | 40.0% | |
| ! | CCTGGTGTGCAATTTTATAC+TGG | + | chr6_4:69736014-69736033 | Msa0994630:CDS | 40.0% |
| GTCGACAATGTAACTGGTAA+AGG | + | chr6_4:69736044-69736063 | Msa0994630:CDS | 40.0% | |
| GACAATGTAACTGGTAAAGG+AGG | + | chr6_4:69736047-69736066 | Msa0994630:CDS | 40.0% | |
| TTGTGTCTCGAGACATAATC+CGG | - | chr6_4:69736093-69736112 | None:intergenic | 40.0% | |
| ! | TCGGTTTGTTTACTGCATCA+GGG | - | chr6_4:69736121-69736140 | None:intergenic | 40.0% |
| ! | TTCGGTTTGTTTACTGCATC+AGG | - | chr6_4:69736122-69736141 | None:intergenic | 40.0% |
| CCAGGTTTAACAACAATGGA+TGG | - | chr6_4:69736149-69736168 | None:intergenic | 40.0% | |
| ! | CCATCCATTGTTGTTAAACC+TGG | + | chr6_4:69736146-69736165 | Msa0994630:CDS | 40.0% |
| ATGTAATCCAGCATGACTTG+AGG | + | chr6_4:69736468-69736487 | Msa0994630:three_prime_UTR | 40.0% | |
| TGTAATCCAGCATGACTTGA+GGG | + | chr6_4:69736469-69736488 | Msa0994630:three_prime_UTR | 40.0% | |
| ! | ATTGGTAACAAGGAGCTGCA+TGG | - | chr6_4:69733865-69733884 | None:intergenic | 45.0% |
| CAGCTCCTTGTTACCAATCT+TGG | + | chr6_4:69733867-69733886 | Msa0994630:CDS | 45.0% | |
| ! | GGTGATAGTGCAACCAAGAT+TGG | - | chr6_4:69733883-69733902 | None:intergenic | 45.0% |
| ATCACCTCTTTCTCTGTTCC+TGG | + | chr6_4:69733897-69733916 | Msa0994630:CDS | 45.0% | |
| TTTGCCAGGAACAGAGAAAG+AGG | - | chr6_4:69733904-69733923 | None:intergenic | 45.0% | |
| TTCTCTGTTCCTGGCAAAGA+TGG | + | chr6_4:69733906-69733925 | Msa0994630:CDS | 45.0% | |
| GTGTTGTCCGATGTTGTTCT+TGG | + | chr6_4:69734039-69734058 | Msa0994630:CDS | 45.0% | |
| GTCAAGGCCAAGAACAACAT+CGG | - | chr6_4:69734049-69734068 | None:intergenic | 45.0% | |
| ! | GGGTTTGCTTCTGTCATTGA+TGG | + | chr6_4:69734129-69734148 | Msa0994630:intron | 45.0% |
| ATACCGACACTTCTGATCGA+AGG | + | chr6_4:69734263-69734282 | Msa0994630:intron | 45.0% | |
| ! | ATGCCTTCGATCAGAAGTGT+CGG | - | chr6_4:69734269-69734288 | None:intergenic | 45.0% |
| GTCGTGTATGTGTCTGTGAT+CGG | - | chr6_4:69734294-69734313 | None:intergenic | 45.0% | |
| ACCGGATCGCTCATATTTGA+TGG | - | chr6_4:69734550-69734569 | None:intergenic | 45.0% | |
| AGACCTCTAATTAAACCCGC+TGG | + | chr6_4:69734637-69734656 | Msa0994630:intron | 45.0% | |
| ! | CAACCAGCGGGTTTAATTAG+AGG | - | chr6_4:69734643-69734662 | None:intergenic | 45.0% |
| CCCACAATGCAGCCAAAATA+AGG | - | chr6_4:69734950-69734969 | None:intergenic | 45.0% | |
| !!! | ATTTTGGCTGCATTGTGGGT+CGG | + | chr6_4:69734951-69734970 | Msa0994630:CDS | 45.0% |
| !! | GATACCATGGAGAGTGTTTG+GGG | - | chr6_4:69735047-69735066 | None:intergenic | 45.0% |
| !! | GGATACCATGGAGAGTGTTT+GGG | - | chr6_4:69735048-69735067 | None:intergenic | 45.0% |
| !! | TGGATACCATGGAGAGTGTT+TGG | - | chr6_4:69735049-69735068 | None:intergenic | 45.0% |
| ! | GTATGACAGTCATGATGGAG+AGG | + | chr6_4:69735324-69735343 | Msa0994630:CDS | 45.0% |
| TCTATCGGACAAGGTTATCC+TGG | + | chr6_4:69735579-69735598 | Msa0994630:intron | 45.0% | |
| CTATCGGACAAGGTTATCCT+GGG | + | chr6_4:69735580-69735599 | Msa0994630:intron | 45.0% | |
| TATCGGACAAGGTTATCCTG+GGG | + | chr6_4:69735581-69735600 | Msa0994630:intron | 45.0% | |
| CGAGTATATTCCCTGAGCTA+TGG | - | chr6_4:69735734-69735753 | None:intergenic | 45.0% | |
| ! | TCAAAAGGTGTACCCTTCAC+GGG | - | chr6_4:69735831-69735850 | None:intergenic | 45.0% |
| GATTGTGGTGAAGAGAAAGC+AGG | + | chr6_4:69735924-69735943 | Msa0994630:CDS | 45.0% | |
| GTGAAGAGAAAGCAGGTTTG+AGG | + | chr6_4:69735931-69735950 | Msa0994630:CDS | 45.0% | |
| TGAGGCATGCTGCAAAAGTT+AGG | + | chr6_4:69735949-69735968 | Msa0994630:CDS | 45.0% | |
| GAGGCATGCTGCAAAAGTTA+GGG | + | chr6_4:69735950-69735969 | Msa0994630:CDS | 45.0% | |
| AAATTGCACACCAGGTGCAT+TGG | - | chr6_4:69736009-69736028 | None:intergenic | 45.0% | |
| GGTAAAGGAGGAGCTGTATA+TGG | + | chr6_4:69736059-69736078 | Msa0994630:CDS | 45.0% | |
| ! | GCTGTATATGGAAAGCATGC+CGG | + | chr6_4:69736071-69736090 | Msa0994630:CDS | 45.0% |
| GGATTATGTCTCGAGACACA+AGG | + | chr6_4:69736092-69736111 | Msa0994630:CDS | 45.0% | |
| CTCGCCAGGTTTAACAACAA+TGG | - | chr6_4:69736153-69736172 | None:intergenic | 45.0% | |
| TCTAATCCCTCAAGTCATGC+TGG | - | chr6_4:69736478-69736497 | None:intergenic | 45.0% | |
| !!! | TTTTTATTTTATTTTTTATG+TGG | + | chr6_4:69734898-69734917 | Msa0994630:intron | 5.0% |
| ! | TTACGTGTGTTGGCGTTACG+AGG | - | chr6_4:69733673-69733692 | None:intergenic | 50.0% |
| GAGAGAGAACCATCTTTGCC+AGG | - | chr6_4:69733918-69733937 | None:intergenic | 50.0% | |
| !! | TTTTGGCTGCATTGTGGGTC+GGG | + | chr6_4:69734952-69734971 | Msa0994630:CDS | 50.0% |
| !! | GTGTTTGGGGCTTTGTTGAG+AGG | - | chr6_4:69735034-69735053 | None:intergenic | 50.0% |
| AAAGCCCCAAACACTCTCCA+TGG | + | chr6_4:69735040-69735059 | Msa0994630:CDS | 50.0% | |
| ! | GACAGTCATGATGGAGAGGA+AGG | + | chr6_4:69735328-69735347 | Msa0994630:CDS | 50.0% |
| !! | TCGTGTTGGTGTTGAGCACT+CGG | - | chr6_4:69735432-69735451 | None:intergenic | 50.0% |
| CAACACCAACACGACACTTG+TGG | + | chr6_4:69735438-69735457 | Msa0994630:intron | 50.0% | |
| ! | TGTGACCACAAGTGTCGTGT+TGG | - | chr6_4:69735446-69735465 | None:intergenic | 50.0% |
| TCACCTCAAGCACGACTATG+AGG | + | chr6_4:69735631-69735650 | Msa0994630:CDS | 50.0% | |
| ACTATGAGGCTCGACATGGA+AGG | + | chr6_4:69735645-69735664 | Msa0994630:CDS | 50.0% | |
| AACTTAGCTGGCCATAGCTC+AGG | + | chr6_4:69735720-69735739 | Msa0994630:CDS | 50.0% | |
| ACTTAGCTGGCCATAGCTCA+GGG | + | chr6_4:69735721-69735740 | Msa0994630:CDS | 50.0% | |
| AACTTGTGGACCAATGCACC+TGG | + | chr6_4:69735996-69736015 | Msa0994630:CDS | 50.0% | |
| GAATGCTGATACTTCTCGCC+AGG | - | chr6_4:69736167-69736186 | None:intergenic | 50.0% | |
| GAGCGATCCGGTCTCAATTG+TGG | + | chr6_4:69734558-69734577 | Msa0994630:CDS | 55.0% | |
| CGTTTGCAGTCACAACCAGC+GGG | - | chr6_4:69734655-69734674 | None:intergenic | 55.0% | |
| CCGTTTGCAGTCACAACCAG+CGG | - | chr6_4:69734656-69734675 | None:intergenic | 55.0% | |
| ! | CCGCTGGTTGTGACTGCAAA+CGG | + | chr6_4:69734653-69734672 | Msa0994630:intron | 55.0% |
| ! | TTGTGGGTCGGGTTGCAAAC+CGG | + | chr6_4:69734963-69734982 | Msa0994630:CDS | 55.0% |
| GAGCCTCATAGTCGTGCTTG+AGG | - | chr6_4:69735637-69735656 | None:intergenic | 55.0% | |
| CACGACTATGAGGCTCGACA+TGG | + | chr6_4:69735641-69735660 | Msa0994630:CDS | 55.0% | |
| GGCACGGTGTTCTGATCAAC+AGG | - | chr6_4:69735792-69735811 | None:intergenic | 55.0% | |
| GATCAGAACACCGTGCCAAC+CGG | + | chr6_4:69735795-69735814 | Msa0994630:CDS | 55.0% | |
| ! | CACGATTTCACCGGTTGGCA+CGG | - | chr6_4:69735808-69735827 | None:intergenic | 55.0% |
| CTTCACGGGCACGATTTCAC+CGG | - | chr6_4:69735817-69735836 | None:intergenic | 55.0% | |
| GGTGAAATCGTGCCCGTGAA+GGG | + | chr6_4:69735816-69735835 | Msa0994630:CDS | 55.0% | |
| GCAGTGACAGTGATGTCCCC+AGG | - | chr6_4:69735600-69735619 | None:intergenic | 60.0% | |
| GAGGCTCGACATGGAAGGAG+TGG | + | chr6_4:69735650-69735669 | Msa0994630:CDS | 60.0% | |
| ACGGGCACGATTTCACCGGT+TGG | - | chr6_4:69735813-69735832 | None:intergenic | 60.0% | |
| CGGTGAAATCGTGCCCGTGA+AGG | + | chr6_4:69735815-69735834 | Msa0994630:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_4 | gene | 69733667 | 69736549 | 69733667 | ID=Msa0994630;Name=Msa0994630 |
| chr6_4 | mRNA | 69733667 | 69736549 | 69733667 | ID=Msa0994630-mRNA-1;Parent=Msa0994630;Name=Msa0994630-mRNA-1;_AED=0.09;_eAED=0.09;_QI=146|0.6|0.83|0.83|1|1|6|335|375 |
| chr6_4 | exon | 69733667 | 69733927 | 69733667 | ID=Msa0994630-mRNA-1:exon:12846;Parent=Msa0994630-mRNA-1 |
| chr6_4 | exon | 69734037 | 69734086 | 69734037 | ID=Msa0994630-mRNA-1:exon:12847;Parent=Msa0994630-mRNA-1 |
| chr6_4 | exon | 69734501 | 69734608 | 69734501 | ID=Msa0994630-mRNA-1:exon:12848;Parent=Msa0994630-mRNA-1 |
| chr6_4 | exon | 69734935 | 69735061 | 69734935 | ID=Msa0994630-mRNA-1:exon:12849;Parent=Msa0994630-mRNA-1 |
| chr6_4 | exon | 69735245 | 69735349 | 69735245 | ID=Msa0994630-mRNA-1:exon:12850;Parent=Msa0994630-mRNA-1 |
| chr6_4 | exon | 69735592 | 69736549 | 69735592 | ID=Msa0994630-mRNA-1:exon:12851;Parent=Msa0994630-mRNA-1 |
| chr6_4 | five_prime_UTR | 69733667 | 69733812 | 69733667 | ID=Msa0994630-mRNA-1:five_prime_utr;Parent=Msa0994630-mRNA-1 |
| chr6_4 | CDS | 69733813 | 69733927 | 69733813 | ID=Msa0994630-mRNA-1:cds;Parent=Msa0994630-mRNA-1 |
| chr6_4 | CDS | 69734037 | 69734086 | 69734037 | ID=Msa0994630-mRNA-1:cds;Parent=Msa0994630-mRNA-1 |
| chr6_4 | CDS | 69734501 | 69734608 | 69734501 | ID=Msa0994630-mRNA-1:cds;Parent=Msa0994630-mRNA-1 |
| chr6_4 | CDS | 69734935 | 69735061 | 69734935 | ID=Msa0994630-mRNA-1:cds;Parent=Msa0994630-mRNA-1 |
| chr6_4 | CDS | 69735245 | 69735349 | 69735245 | ID=Msa0994630-mRNA-1:cds;Parent=Msa0994630-mRNA-1 |
| chr6_4 | CDS | 69735592 | 69736214 | 69735592 | ID=Msa0994630-mRNA-1:cds;Parent=Msa0994630-mRNA-1 |
| chr6_4 | three_prime_UTR | 69736215 | 69736549 | 69736215 | ID=Msa0994630-mRNA-1:three_prime_utr;Parent=Msa0994630-mRNA-1 |
| Gene Sequence |
| Protein sequence |
