AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0623700


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0623700 MtrunA17_Chr3g0091791 95.652 138 6 0 1 138 1 138 5.45e-94 268
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0623700 AT1G26550.1 87.603 121 15 0 18 138 16 136 1.12e-68 204

Find 67 sgRNAs with CRISPR-Local

Find 187 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAACATGAAAGGTTTGAATT+TGG 0.166483 4_3:+1015486 None:intergenic
GTTGCAGAGTTTAGAAATTC+AGG 0.225335 4_3:-1015605 None:intergenic
AAAGATGGCTGGCCCATTTC+AGG 0.234412 4_3:+1018226 Msa0623700:CDS
AACATGAAAGGTTTGAATTT+GGG 0.296289 4_3:+1015487 None:intergenic
CATATATAATAACAACTAGA+AGG 0.357563 4_3:-1018316 None:intergenic
ACCATCTTGCAGCTTCTTGT+AGG 0.370602 4_3:-1017482 None:intergenic
TGGGTCTGTGCTACACGAAA+TGG 0.418234 4_3:+1015515 Msa0623700:five_prime_UTR
TTGAAGGCAACTTCCTGAAA+TGG 0.431848 4_3:-1018239 None:intergenic
TTGGCTTGACAATGGGGATA+AGG 0.432340 4_3:+1017504 Msa0623700:CDS
GAGTATTCTGAATGCCCATC+AGG 0.445595 4_3:+1018167 Msa0623700:CDS
TATACCTTTGCAAACTCTGC+TGG 0.446252 4_3:-1017532 None:intergenic
TCTCCACCCTTCTTTCCTGA+TGG 0.455060 4_3:-1018182 None:intergenic
CTCCACCCTTCTTTCCTGAT+GGG 0.462426 4_3:-1018181 None:intergenic
GGTTTGAATTTGGGCCCAAT+GGG 0.464112 4_3:+1015496 Msa0623700:five_prime_UTR
GGGAAAGCTGCTGATGGGCT+TGG 0.479109 4_3:+1017058 Msa0623700:CDS
AGGTTTGAATTTGGGCCCAA+TGG 0.481040 4_3:+1015495 Msa0623700:five_prime_UTR
GGAGCACTGGTAACTCCAAC+AGG 0.481302 4_3:-1018266 None:intergenic
CGCAAAGGCAAAGGAGTCAA+AGG 0.482750 4_3:+1016973 Msa0623700:CDS
GGCAAAGGAGTCAAAGGGTA+AGG 0.483433 4_3:+1016979 Msa0623700:CDS
TTCGTGTAGCACAGACCCAT+TGG 0.485171 4_3:-1015511 None:intergenic
GGAAAGAAGGGTGGAGACCT+TGG 0.487014 4_3:+1018188 Msa0623700:CDS
ATGTGATTCCTCGTCTCGAC+TGG 0.487810 4_3:+1015539 Msa0623700:five_prime_UTR
GTCAAAGGGTAAGGGAAAGC+AGG 0.489595 4_3:+1016988 Msa0623700:CDS
GAGAATGCTTCCAAGGGAAA+AGG 0.493127 4_3:+1017028 Msa0623700:CDS
TGAATGCCCATCAGGAAAGA+AGG 0.494243 4_3:+1018175 Msa0623700:CDS
TGAAGGCAACTTCCTGAAAT+GGG 0.494251 4_3:-1018238 None:intergenic
ATGGTTTCCACGGGGAAAGA+TGG 0.495650 4_3:+1018211 Msa0623700:CDS
GAGACCTTGGATGGTTTCCA+CGG 0.503599 4_3:+1018201 Msa0623700:CDS
AACTCCAACAGGTGTGTTGA+AGG 0.504286 4_3:-1018255 None:intergenic
TCGTGTAGCACAGACCCATT+GGG 0.508316 4_3:-1015510 None:intergenic
AAGATGGTTGGCTTGACAAT+GGG 0.509183 4_3:+1017497 Msa0623700:CDS
CGTTGATTTGAAAGGAGCAC+TGG 0.509492 4_3:-1018279 None:intergenic
TGAATAGTTGTTCGAACGAT+GGG 0.520110 4_3:+1016944 Msa0623700:intron
AAAGGTGGGAAAGCTGCTGA+TGG 0.525616 4_3:+1017052 Msa0623700:CDS
GAGCAATACGTTGATTTGAA+AGG 0.530210 4_3:-1018287 None:intergenic
TTTCCACGGGGAAAGATGGC+TGG 0.533452 4_3:+1018215 Msa0623700:CDS
GGTACTTGCACTTATGTCAA+AGG 0.560594 4_3:+1017079 Msa0623700:CDS
AGACCTTGGATGGTTTCCAC+GGG 0.562266 4_3:+1018202 Msa0623700:CDS
GCTTCCAAGGGAAAAGGAAA+AGG 0.563501 4_3:+1017034 Msa0623700:CDS
AAGTGATGAGAATGCTTCCA+AGG 0.564213 4_3:+1017021 Msa0623700:CDS
AGAAGGGTGGAGACCTTGGA+TGG 0.573215 4_3:+1018192 Msa0623700:CDS
AAATTCAGGAAGAACAATCA+AGG 0.573745 4_3:-1015591 None:intergenic
TCCAAGGGAAAAGGAAAAGG+TGG 0.576313 4_3:+1017037 Msa0623700:CDS
GTTGCCTTCAACACACCTGT+TGG 0.577492 4_3:+1018251 Msa0623700:CDS
ATGAATAGTTGTTCGAACGA+TGG 0.579048 4_3:+1016943 Msa0623700:intron
GCAAAGGCAAAGGAGTCAAA+GGG 0.585236 4_3:+1016974 Msa0623700:CDS
AAGGGAAAGCAGGCTGCAAG+TGG 0.585506 4_3:+1016998 Msa0623700:CDS
CAAGATGGTTGGCTTGACAA+TGG 0.586005 4_3:+1017496 Msa0623700:CDS
ACAAGAAGCTGCAAGATGGT+TGG 0.586477 4_3:+1017485 Msa0623700:CDS
GGGAAAAGACGCAAAGGCAA+AGG 0.594129 4_3:+1016964 Msa0623700:CDS
GAATGCCCATCAGGAAAGAA+GGG 0.596490 4_3:+1018176 Msa0623700:CDS
GCCTACAAGAAGCTGCAAGA+TGG 0.599336 4_3:+1017481 Msa0623700:CDS
AAGGTGGGAAAGCTGCTGAT+GGG 0.609652 4_3:+1017053 Msa0623700:CDS
AACGATGGGAAAAGACGCAA+AGG 0.622639 4_3:+1016958 Msa0623700:exon
TCCTCCAGCAGAGTTTGCAA+AGG 0.623533 4_3:+1017528 Msa0623700:CDS
ACCTTTGCAAACTCTGCTGG+AGG 0.624084 4_3:-1017529 None:intergenic
ATATATAATAACAACTAGAA+GGG 0.625968 4_3:-1018315 None:intergenic
TTCCCCGTGGAAACCATCCA+AGG 0.629084 4_3:-1018205 None:intergenic
GCAAAGGAGTCAAAGGGTAA+GGG 0.629245 4_3:+1016980 Msa0623700:CDS
CATATCTTATGTGAGAAACA+AGG 0.634519 4_3:+1017445 Msa0623700:CDS
AGTGATGAGAATGCTTCCAA+GGG 0.642736 4_3:+1017022 Msa0623700:CDS
TGCCCATCAGGAAAGAAGGG+TGG 0.643391 4_3:+1018179 Msa0623700:CDS
CCAAGGGAAAAGGAAAAGGT+GGG 0.647496 4_3:+1017038 Msa0623700:CDS
AGATGGTTGGCTTGACAATG+GGG 0.681394 4_3:+1017498 Msa0623700:CDS
TATTCACACCAGTCGAGACG+AGG 0.685763 4_3:-1015547 None:intergenic
GGGCCAGCCATCTTTCCCCG+TGG 0.694677 4_3:-1018218 None:intergenic
GACCTTGGATGGTTTCCACG+GGG 0.727134 4_3:+1018203 Msa0623700:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATTATTAATAGATGATAAT+TGG + chr4_3:1015837-1015856 Msa0623700:intron 10.0%
!!! TATTATTATTTTCTTTACTT+TGG + chr4_3:1017553-1017572 Msa0623700:intron 10.0%
!!! TTTTAAAAGCAAATTTGAAA+CGG - chr4_3:1015975-1015994 None:intergenic 15.0%
!!! TTCAAATTTGCTTTTAAAAA+TGG + chr4_3:1015976-1015995 Msa0623700:intron 15.0%
!!! TCAAATTTGCTTTTAAAAAT+GGG + chr4_3:1015977-1015996 Msa0623700:intron 15.0%
!! ATCCTTATTATTCATTTATA+TGG + chr4_3:1016156-1016175 Msa0623700:intron 15.0%
!! ATCCATATAAATGAATAATA+AGG - chr4_3:1016161-1016180 None:intergenic 15.0%
!!! AAATGCTTTTCAAAAATAAA+CGG + chr4_3:1017334-1017353 Msa0623700:intron 15.0%
!!! ATATTTTGATATCAACAAAT+CGG - chr4_3:1017943-1017962 None:intergenic 15.0%
!! ATATATAATAACAACTAGAA+GGG - chr4_3:1018318-1018337 None:intergenic 15.0%
!!! GATTAGTTAGCTTATAATTA+TGG + chr4_3:1015777-1015796 Msa0623700:intron 20.0%
!! TTAGCTTATAATTATGGTTT+GGG + chr4_3:1015783-1015802 Msa0623700:intron 20.0%
!! AATTTAGTCCTATAAAATCA+CGG + chr4_3:1016010-1016029 Msa0623700:intron 20.0%
!!! TTGCAAATAGATTGAAATTT+TGG + chr4_3:1017237-1017256 Msa0623700:intron 20.0%
!!! TTGTTTTCATTGTTTTTGAA+AGG + chr4_3:1017273-1017292 Msa0623700:intron 20.0%
!!! AATGCTTTTCAAAAATAAAC+GGG + chr4_3:1017335-1017354 Msa0623700:intron 20.0%
!! TTAAATAGAAAGCCAAATAA+GGG - chr4_3:1017757-1017776 None:intergenic 20.0%
!! TTTAAATAGAAAGCCAAATA+AGG - chr4_3:1017758-1017777 None:intergenic 20.0%
!!! ATTTGGCTTTCTATTTAAAA+TGG + chr4_3:1017759-1017778 Msa0623700:intron 20.0%
!!! TTTGGCTTTCTATTTAAAAT+GGG + chr4_3:1017760-1017779 Msa0623700:intron 20.0%
!! CATATATAATAACAACTAGA+AGG - chr4_3:1018319-1018338 None:intergenic 20.0%
!! TTTTATTCATTTGTGCTTAG+AGG + chr4_3:1015630-1015649 Msa0623700:five_prime_UTR 25.0%
! TGTAGATTGAAATTCAACTT+GGG - chr4_3:1015744-1015763 None:intergenic 25.0%
! ATGTAGATTGAAATTCAACT+TGG - chr4_3:1015745-1015764 None:intergenic 25.0%
!! GTTAGCTTATAATTATGGTT+TGG + chr4_3:1015782-1015801 Msa0623700:intron 25.0%
! ATTTAGTCCTATAAAATCAC+GGG + chr4_3:1016011-1016030 Msa0623700:intron 25.0%
! AAAAAGGACTAAATCATCTA+AGG - chr4_3:1016051-1016070 None:intergenic 25.0%
!! AGATGATTTAGTCCTTTTTA+AGG + chr4_3:1016052-1016071 Msa0623700:intron 25.0%
! TTATCTCTATGGATATCAAA+TGG + chr4_3:1016579-1016598 Msa0623700:intron 25.0%
! AATAAATCAGAAACTAACTC+TGG + chr4_3:1016728-1016747 Msa0623700:intron 25.0%
! AATTTCTTCATCTTCTATGT+TGG - chr4_3:1016817-1016836 None:intergenic 25.0%
! GTTGAAGTGAAAATAAAAAC+AGG - chr4_3:1017159-1017178 None:intergenic 25.0%
! AACTGTAAAATGAACATAGT+GGG - chr4_3:1017216-1017235 None:intergenic 25.0%
! AAACTGTAAAATGAACATAG+TGG - chr4_3:1017217-1017236 None:intergenic 25.0%
!! ATGCTTTTCAAAAATAAACG+GGG + chr4_3:1017336-1017355 Msa0623700:intron 25.0%
! CGTAGAATTACATTCATTTA+TGG + chr4_3:1017401-1017420 Msa0623700:intron 25.0%
! TATACACTAGGATAAAACAT+AGG + chr4_3:1017580-1017599 Msa0623700:intron 25.0%
!! ACTGCTTGGAAATTTTTAAA+AGG + chr4_3:1017651-1017670 Msa0623700:intron 25.0%
!!! CTGCTTGGAAATTTTTAAAA+GGG + chr4_3:1017652-1017671 Msa0623700:intron 25.0%
!! TTGGCTTTCTATTTAAAATG+GGG + chr4_3:1017761-1017780 Msa0623700:intron 25.0%
! GAAACTTATTATGTGGTAAA+TGG + chr4_3:1017788-1017807 Msa0623700:intron 25.0%
AAATTCAGGAAGAACAATCA+AGG - chr4_3:1015594-1015613 None:intergenic 30.0%
AACAGTGAACTGAAACAAAA+AGG - chr4_3:1015677-1015696 None:intergenic 30.0%
! TTGAAAACCCGTGATTTTAT+AGG - chr4_3:1016021-1016040 None:intergenic 30.0%
TTGGTTGCATAATATATGCA+TGG - chr4_3:1016113-1016132 None:intergenic 30.0%
TCATTGAAAAAAAGTCTACG+AGG + chr4_3:1016324-1016343 Msa0623700:intron 30.0%
ATGAATGTTGCTAGTCATTT+CGG + chr4_3:1016479-1016498 Msa0623700:intron 30.0%
AGATTACAGTTAGAATCAGT+TGG - chr4_3:1016706-1016725 None:intergenic 30.0%
ACTGTAAAATGAACATAGTG+GGG - chr4_3:1017215-1017234 None:intergenic 30.0%
CATATCTTATGTGAGAAACA+AGG + chr4_3:1017445-1017464 Msa0623700:CDS 30.0%
! TACTTTGGAAGTTATACACT+AGG + chr4_3:1017568-1017587 Msa0623700:intron 30.0%
AAAAAGAGACTATAACTGCT+TGG + chr4_3:1017637-1017656 Msa0623700:intron 30.0%
GTATACACTAAACCCTTATT+TGG + chr4_3:1017742-1017761 Msa0623700:intron 30.0%
!! ACATGCATATGTATTTTGGA+GGG - chr4_3:1018032-1018051 None:intergenic 30.0%
! ACTGACATGCATATGTATTT+TGG - chr4_3:1018036-1018055 None:intergenic 30.0%
GTTGCAGAGTTTAGAAATTC+AGG - chr4_3:1015608-1015627 None:intergenic 35.0%
TCAACTTGGGTTTCAGAAAA+TGG - chr4_3:1015731-1015750 None:intergenic 35.0%
!!! TCCTTTTTAAGGTGAATGAG+TGG + chr4_3:1016063-1016082 Msa0623700:intron 35.0%
!!! CCTTTTTAAGGTGAATGAGT+GGG + chr4_3:1016064-1016083 Msa0623700:intron 35.0%
!!! CTTTTTAAGGTGAATGAGTG+GGG + chr4_3:1016065-1016084 Msa0623700:intron 35.0%
! CATAATATATGCATGGACTG+GGG - chr4_3:1016106-1016125 None:intergenic 35.0%
GCATAATATATGCATGGACT+GGG - chr4_3:1016107-1016126 None:intergenic 35.0%
TGCATAATATATGCATGGAC+TGG - chr4_3:1016108-1016127 None:intergenic 35.0%
ATGCTGATGCTAAACATGAA+AGG + chr4_3:1016226-1016245 Msa0623700:intron 35.0%
CTAGCTAACCTTTGAATAAG+TGG + chr4_3:1016284-1016303 Msa0623700:intron 35.0%
TCACAACTCAATTTCAGTCA+AGG - chr4_3:1016377-1016396 None:intergenic 35.0%
! TTGAGTTGTGAAACTTAGAC+AGG + chr4_3:1016386-1016405 Msa0623700:intron 35.0%
!!! TTACTGATTTTGCTTTCTCC+AGG + chr4_3:1016409-1016428 Msa0623700:intron 35.0%
ATGAAGATTACACTTACACC+TGG - chr4_3:1016430-1016449 None:intergenic 35.0%
! TCTATATGTGCTCGTTTTGT+TGG + chr4_3:1016552-1016571 Msa0623700:intron 35.0%
!! CTATATGTGCTCGTTTTGTT+GGG + chr4_3:1016553-1016572 Msa0623700:intron 35.0%
! TTGTTGGGTTGTTATCTCTA+TGG + chr4_3:1016568-1016587 Msa0623700:intron 35.0%
TAGGTATCAAAACGAAAACG+TGG + chr4_3:1016622-1016641 Msa0623700:intron 35.0%
! AGAAAGCGTGTTTAACACTA+CGG + chr4_3:1016660-1016679 Msa0623700:intron 35.0%
ATGAATAGTTGTTCGAACGA+TGG + chr4_3:1016943-1016962 Msa0623700:intron 35.0%
TGAATAGTTGTTCGAACGAT+GGG + chr4_3:1016944-1016963 Msa0623700:intron 35.0%
ATTGAAGTAAATGAACCCTG+AGG - chr4_3:1017131-1017150 None:intergenic 35.0%
TGAAAGAAATTTAGCGTGTC+TGG - chr4_3:1017371-1017390 None:intergenic 35.0%
GGAAGGGGATAAAATAACTA+TGG - chr4_3:1017821-1017840 None:intergenic 35.0%
!! ATGCATATGTATTTTGGAGG+GGG - chr4_3:1018030-1018049 None:intergenic 35.0%
!! CATGCATATGTATTTTGGAG+GGG - chr4_3:1018031-1018050 None:intergenic 35.0%
!! GACATGCATATGTATTTTGG+AGG - chr4_3:1018033-1018052 None:intergenic 35.0%
!! GAGCAATACGTTGATTTGAA+AGG - chr4_3:1018290-1018309 None:intergenic 35.0%
AAGCTGAAATGCAAGTTGCT+AGG - chr4_3:1015916-1015935 None:intergenic 40.0%
CCCACTCATTCACCTTAAAA+AGG - chr4_3:1016067-1016086 None:intergenic 40.0%
AACCAACTGAGCTATGATCA+CGG + chr4_3:1016127-1016146 Msa0623700:intron 40.0%
CATAAGCGCCACTTATTCAA+AGG - chr4_3:1016295-1016314 None:intergenic 40.0%
AAAGTCTACGAGGTCTTCTT+AGG + chr4_3:1016334-1016353 Msa0623700:intron 40.0%
! TCAAGGTGTTCAACCAAATG+TGG - chr4_3:1016360-1016379 None:intergenic 40.0%
TGGAGCTCGTGAATCAATTT+CGG + chr4_3:1016521-1016540 Msa0623700:intron 40.0%
!! TGACGTCGATTTCTTTAGCT+AGG + chr4_3:1016603-1016622 Msa0623700:intron 40.0%
GTGGAGATTGTTAGATGATC+AGG - chr4_3:1016770-1016789 None:intergenic 40.0%
TATCACACATCAGGTTACAG+TGG - chr4_3:1016789-1016808 None:intergenic 40.0%
TTGGATGTCTATCACACATC+AGG - chr4_3:1016798-1016817 None:intergenic 40.0%
AAGTGATGAGAATGCTTCCA+AGG + chr4_3:1017021-1017040 Msa0623700:CDS 40.0%
AGTGATGAGAATGCTTCCAA+GGG + chr4_3:1017022-1017041 Msa0623700:CDS 40.0%
GGTACTTGCACTTATGTCAA+AGG + chr4_3:1017079-1017098 Msa0623700:CDS 40.0%
! GAACATAGTGGGGAAACTAT+TGG - chr4_3:1017205-1017224 None:intergenic 40.0%
!! AAGATGGTTGGCTTGACAAT+GGG + chr4_3:1017497-1017516 Msa0623700:CDS 40.0%
TATACCTTTGCAAACTCTGC+TGG - chr4_3:1017535-1017554 None:intergenic 40.0%
GGGCTGAGAAACTTATTATG+TGG + chr4_3:1017781-1017800 Msa0623700:intron 40.0%
GCATTGAATCCATTTCTGAG+CGG - chr4_3:1017842-1017861 None:intergenic 40.0%
GTCAGTAAATACCCGTCAAT+GGG - chr4_3:1017990-1018009 None:intergenic 40.0%
!! TGCATATGTATTTTGGAGGG+GGG - chr4_3:1018029-1018048 None:intergenic 40.0%
!! ATGCATGTCAGTTTTGTCGA+AGG + chr4_3:1018044-1018063 Msa0623700:intron 40.0%
TGAAGGCAACTTCCTGAAAT+GGG - chr4_3:1018241-1018260 None:intergenic 40.0%
TTGAAGGCAACTTCCTGAAA+TGG - chr4_3:1018242-1018261 None:intergenic 40.0%
AGGTTTGAATTTGGGCCCAA+TGG + chr4_3:1015495-1015514 Msa0623700:five_prime_UTR 45.0%
GGTTTGAATTTGGGCCCAAT+GGG + chr4_3:1015496-1015515 Msa0623700:five_prime_UTR 45.0%
TACAGTAGCACCATCACTAG+CGG + chr4_3:1015935-1015954 Msa0623700:intron 45.0%
ACCAACTGAGCTATGATCAC+GGG + chr4_3:1016128-1016147 Msa0623700:intron 45.0%
AGGTCTTCTTAGGCCACATT+TGG + chr4_3:1016344-1016363 Msa0623700:intron 45.0%
GTACGAGTCATGTGTTTGTC+TGG + chr4_3:1016501-1016520 Msa0623700:intron 45.0%
AACGATGGGAAAAGACGCAA+AGG + chr4_3:1016958-1016977 Msa0623700:exon 45.0%
GCAAAGGCAAAGGAGTCAAA+GGG + chr4_3:1016974-1016993 Msa0623700:CDS 45.0%
GCAAAGGAGTCAAAGGGTAA+GGG + chr4_3:1016980-1016999 Msa0623700:CDS 45.0%
GAGAATGCTTCCAAGGGAAA+AGG + chr4_3:1017028-1017047 Msa0623700:CDS 45.0%
GCTTCCAAGGGAAAAGGAAA+AGG + chr4_3:1017034-1017053 Msa0623700:CDS 45.0%
TCCAAGGGAAAAGGAAAAGG+TGG + chr4_3:1017037-1017056 Msa0623700:CDS 45.0%
CCAAGGGAAAAGGAAAAGGT+GGG + chr4_3:1017038-1017057 Msa0623700:CDS 45.0%
ACCATCTTGCAGCTTCTTGT+AGG - chr4_3:1017485-1017504 None:intergenic 45.0%
ACAAGAAGCTGCAAGATGGT+TGG + chr4_3:1017485-1017504 Msa0623700:CDS 45.0%
!! CAAGATGGTTGGCTTGACAA+TGG + chr4_3:1017496-1017515 Msa0623700:CDS 45.0%
!! AGATGGTTGGCTTGACAATG+GGG + chr4_3:1017498-1017517 Msa0623700:CDS 45.0%
! TTGGCTTGACAATGGGGATA+AGG + chr4_3:1017504-1017523 Msa0623700:CDS 45.0%
AATCCATTTCTGAGCGGAAG+GGG - chr4_3:1017836-1017855 None:intergenic 45.0%
GAATCCATTTCTGAGCGGAA+GGG - chr4_3:1017837-1017856 None:intergenic 45.0%
TGAATCCATTTCTGAGCGGA+AGG - chr4_3:1017838-1017857 None:intergenic 45.0%
ACAGCTGAATTCAAGACTGC+TGG - chr4_3:1017876-1017895 None:intergenic 45.0%
GCAGTCTTGAATTCAGCTGT+AGG + chr4_3:1017876-1017895 Msa0623700:intron 45.0%
CTGCATACAATGCCCATTGA+CGG + chr4_3:1017975-1017994 Msa0623700:intron 45.0%
TGCATACAATGCCCATTGAC+GGG + chr4_3:1017976-1017995 Msa0623700:intron 45.0%
GGTCAGTAAATACCCGTCAA+TGG - chr4_3:1017991-1018010 None:intergenic 45.0%
GAGTATTCTGAATGCCCATC+AGG + chr4_3:1018167-1018186 Msa0623700:CDS 45.0%
TGAATGCCCATCAGGAAAGA+AGG + chr4_3:1018175-1018194 Msa0623700:CDS 45.0%
GAATGCCCATCAGGAAAGAA+GGG + chr4_3:1018176-1018195 Msa0623700:CDS 45.0%
AACTCCAACAGGTGTGTTGA+AGG - chr4_3:1018258-1018277 None:intergenic 45.0%
!! CGTTGATTTGAAAGGAGCAC+TGG - chr4_3:1018282-1018301 None:intergenic 45.0%
TCGTGTAGCACAGACCCATT+GGG - chr4_3:1015513-1015532 None:intergenic 50.0%
TTCGTGTAGCACAGACCCAT+TGG - chr4_3:1015514-1015533 None:intergenic 50.0%
TGGGTCTGTGCTACACGAAA+TGG + chr4_3:1015515-1015534 Msa0623700:five_prime_UTR 50.0%
ATGTGATTCCTCGTCTCGAC+TGG + chr4_3:1015539-1015558 Msa0623700:five_prime_UTR 50.0%
TATTCACACCAGTCGAGACG+AGG - chr4_3:1015550-1015569 None:intergenic 50.0%
CCAACTGAGCTATGATCACG+GGG + chr4_3:1016129-1016148 Msa0623700:intron 50.0%
GGGAAAAGACGCAAAGGCAA+AGG + chr4_3:1016964-1016983 Msa0623700:CDS 50.0%
CGCAAAGGCAAAGGAGTCAA+AGG + chr4_3:1016973-1016992 Msa0623700:CDS 50.0%
GGCAAAGGAGTCAAAGGGTA+AGG + chr4_3:1016979-1016998 Msa0623700:CDS 50.0%
GTCAAAGGGTAAGGGAAAGC+AGG + chr4_3:1016988-1017007 Msa0623700:CDS 50.0%
! CCCACCTTTTCCTTTTCCCT+TGG - chr4_3:1017041-1017060 None:intergenic 50.0%
AAAGGTGGGAAAGCTGCTGA+TGG + chr4_3:1017052-1017071 Msa0623700:CDS 50.0%
AAGGTGGGAAAGCTGCTGAT+GGG + chr4_3:1017053-1017072 Msa0623700:CDS 50.0%
! ACCCTGAGGTGCTTGTGAAT+GGG - chr4_3:1017117-1017136 None:intergenic 50.0%
! AACCCTGAGGTGCTTGTGAA+TGG - chr4_3:1017118-1017137 None:intergenic 50.0%
GCCTACAAGAAGCTGCAAGA+TGG + chr4_3:1017481-1017500 Msa0623700:CDS 50.0%
TCCTCCAGCAGAGTTTGCAA+AGG + chr4_3:1017528-1017547 Msa0623700:CDS 50.0%
ACCTTTGCAAACTCTGCTGG+AGG - chr4_3:1017532-1017551 None:intergenic 50.0%
TATCCCCTTCCGCTCAGAAA+TGG + chr4_3:1017830-1017849 Msa0623700:intron 50.0%
GACGGGTATTTACTGACCAC+AGG + chr4_3:1017993-1018012 Msa0623700:intron 50.0%
!! TGTATTTTGGAGGGGGGATC+AGG - chr4_3:1018023-1018042 None:intergenic 50.0%
TAATATTTCGCCGACCTCGC+AGG + chr4_3:1018136-1018155 Msa0623700:intron 50.0%
ATACTCTTGAGCTACCTGCG+AGG - chr4_3:1018153-1018172 None:intergenic 50.0%
CTCCACCCTTCTTTCCTGAT+GGG - chr4_3:1018184-1018203 None:intergenic 50.0%
TCTCCACCCTTCTTTCCTGA+TGG - chr4_3:1018185-1018204 None:intergenic 50.0%
GAGACCTTGGATGGTTTCCA+CGG + chr4_3:1018201-1018220 Msa0623700:CDS 50.0%
AGACCTTGGATGGTTTCCAC+GGG + chr4_3:1018202-1018221 Msa0623700:CDS 50.0%
ATGGTTTCCACGGGGAAAGA+TGG + chr4_3:1018211-1018230 Msa0623700:CDS 50.0%
! AAAGATGGCTGGCCCATTTC+AGG + chr4_3:1018226-1018245 Msa0623700:CDS 50.0%
GTTGCCTTCAACACACCTGT+TGG + chr4_3:1018251-1018270 Msa0623700:CDS 50.0%
ACCATCACTAGCGGCTGCTA+CGG + chr4_3:1015944-1015963 Msa0623700:intron 55.0%
! AGGTGAATGAGTGGGGTGTC+TGG + chr4_3:1016072-1016091 Msa0623700:intron 55.0%
CCCCGTGATCATAGCTCAGT+TGG - chr4_3:1016132-1016151 None:intergenic 55.0%
AAGGGAAAGCAGGCTGCAAG+TGG + chr4_3:1016998-1017017 Msa0623700:CDS 55.0%
TCCCCATTCACAAGCACCTC+AGG + chr4_3:1017112-1017131 Msa0623700:intron 55.0%
! CCCTGAGGTGCTTGTGAATG+GGG - chr4_3:1017116-1017135 None:intergenic 55.0%
CCCCATTCACAAGCACCTCA+GGG + chr4_3:1017113-1017132 Msa0623700:intron 55.0%
TCTTGAGCTACCTGCGAGGT+CGG - chr4_3:1018149-1018168 None:intergenic 55.0%
TGCCCATCAGGAAAGAAGGG+TGG + chr4_3:1018179-1018198 Msa0623700:CDS 55.0%
GGAAAGAAGGGTGGAGACCT+TGG + chr4_3:1018188-1018207 Msa0623700:CDS 55.0%
AGAAGGGTGGAGACCTTGGA+TGG + chr4_3:1018192-1018211 Msa0623700:CDS 55.0%
GACCTTGGATGGTTTCCACG+GGG + chr4_3:1018203-1018222 Msa0623700:CDS 55.0%
TTCCCCGTGGAAACCATCCA+AGG - chr4_3:1018208-1018227 None:intergenic 55.0%
TTTCCACGGGGAAAGATGGC+TGG + chr4_3:1018215-1018234 Msa0623700:CDS 55.0%
!! GGAGCACTGGTAACTCCAAC+AGG - chr4_3:1018269-1018288 None:intergenic 55.0%
ACCGTAGCAGCCGCTAGTGA+TGG - chr4_3:1015948-1015967 None:intergenic 60.0%
!! GGGAAAGCTGCTGATGGGCT+TGG + chr4_3:1017058-1017077 Msa0623700:CDS 60.0%
GGGGGGATCAGGATTTCCTG+TGG - chr4_3:1018012-1018031 None:intergenic 60.0%
GGGCCAGCCATCTTTCCCCG+TGG - chr4_3:1018221-1018240 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr4_3 gene 1015493 1018352 1015493 ID=Msa0623700;Name=Msa0623700
chr4_3 mRNA 1015493 1018352 1015493 ID=Msa0623700-mRNA-1;Parent=Msa0623700;Name=Msa0623700-mRNA-1;_AED=0.19;_eAED=0.19;_QI=170|1|0.75|1|0.66|0.5|4|0|147
chr4_3 exon 1015493 1015651 1015493 ID=Msa0623700-mRNA-1:exon:340;Parent=Msa0623700-mRNA-1
chr4_3 exon 1016951 1017100 1016951 ID=Msa0623700-mRNA-1:exon:341;Parent=Msa0623700-mRNA-1
chr4_3 exon 1017440 1017549 1017440 ID=Msa0623700-mRNA-1:exon:342;Parent=Msa0623700-mRNA-1
chr4_3 exon 1018158 1018352 1018158 ID=Msa0623700-mRNA-1:exon:343;Parent=Msa0623700-mRNA-1
chr4_3 five_prime_UTR 1015493 1015651 1015493 ID=Msa0623700-mRNA-1:five_prime_utr;Parent=Msa0623700-mRNA-1
chr4_3 five_prime_UTR 1016951 1016961 1016951 ID=Msa0623700-mRNA-1:five_prime_utr;Parent=Msa0623700-mRNA-1
chr4_3 CDS 1016962 1017100 1016962 ID=Msa0623700-mRNA-1:cds;Parent=Msa0623700-mRNA-1
chr4_3 CDS 1017440 1017549 1017440 ID=Msa0623700-mRNA-1:cds;Parent=Msa0623700-mRNA-1
chr4_3 CDS 1018158 1018352 1018158 ID=Msa0623700-mRNA-1:cds;Parent=Msa0623700-mRNA-1
Gene Sequence

>Msa0623700

ATGGGAAAAGACGCAAAGGCAAAGGAGTCAAAGGGTAAGGGAAAGCAGGCTGCAAGTGGAAGTGATGAGAATGCTTCCAAGGGAAAAGGAAAAGGTGGGAAAGCTGCTGATGGGCTTGGTACTTGCACTTATGTCAAAGCAAGACATATCTTATGTGAGAAACAAGGTAAGATTAATGAAGCCTACAAGAAGCTGCAAGATGGTTGGCTTGACAATGGGGATAAGGTTCCTCCAGCAGAGTTTGCAAAGGTAGCTCAAGAGTATTCTGAATGCCCATCAGGAAAGAAGGGTGGAGACCTTGGATGGTTTCCACGGGGAAAGATGGCTGGCCCATTTCAGGAAGTTGCCTTCAACACACCTGTTGGAGTTACCAGTGCTCCTTTCAAATCAACGTATTGCTCTCGCACCCTTCTAGTTGTTATTATATATGCATTATTGCTCTGA

Protein sequence

>Msa0623700

MGKDAKAKESKGKGKQAASGSDENASKGKGKGGKAADGLGTCTYVKARHILCEKQGKINEAYKKLQDGWLDNGDKVPPAEFAKVAQEYSECPSGKKGGDLGWFPRGKMAGPFQEVAFNTPVGVTSAPFKSTYCSRTLLVVIIYALLL*