AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1397810


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1397810 MtrunA17_Chr3g0091791 95.652 138 6 0 1 138 1 138 5.45e-94 268
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1397810 AT1G26550.1 87.603 121 15 0 18 138 16 136 1.12e-68 204

Find 67 sgRNAs with CRISPR-Local

Find 187 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAACATGAAAGGTTTGAATT+TGG 0.166483 tig0022193:+27469 None:intergenic
GTTGCAGAGTTTAGAAATTC+AGG 0.225335 tig0022193:-27588 None:intergenic
AAAGATGGCTGGCCCATTTC+AGG 0.234412 tig0022193:+30212 Msa1397810:CDS
AACATGAAAGGTTTGAATTT+GGG 0.296289 tig0022193:+27470 None:intergenic
CATATATAATAACAACTAGA+AGG 0.357563 tig0022193:-30302 None:intergenic
ACCATCTTGCAGCTTCTTGT+AGG 0.370602 tig0022193:-29468 None:intergenic
TGGGTCTGTGCTACACGAAA+TGG 0.418234 tig0022193:+27498 Msa1397810:five_prime_UTR
TTGAAGGCAACTTCCTGAAA+TGG 0.431848 tig0022193:-30225 None:intergenic
TTGGCTTGACAATGGGGATA+AGG 0.432340 tig0022193:+29490 Msa1397810:CDS
GAGTATTCTGAATGCCCATC+AGG 0.445595 tig0022193:+30153 Msa1397810:CDS
TATACCTTTGCAAACTCTGC+TGG 0.446252 tig0022193:-29518 None:intergenic
TCTCCACCCTTCTTTCCTGA+TGG 0.455060 tig0022193:-30168 None:intergenic
CTCCACCCTTCTTTCCTGAT+GGG 0.462426 tig0022193:-30167 None:intergenic
GGTTTGAATTTGGGCCCAAT+GGG 0.464112 tig0022193:+27479 Msa1397810:five_prime_UTR
GGGAAAGCTGCTGATGGGCT+TGG 0.479109 tig0022193:+29044 Msa1397810:CDS
AGGTTTGAATTTGGGCCCAA+TGG 0.481040 tig0022193:+27478 Msa1397810:five_prime_UTR
GGAGCACTGGTAACTCCAAC+AGG 0.481302 tig0022193:-30252 None:intergenic
CGCAAAGGCAAAGGAGTCAA+AGG 0.482750 tig0022193:+28959 Msa1397810:CDS
GGCAAAGGAGTCAAAGGGTA+AGG 0.483433 tig0022193:+28965 Msa1397810:CDS
TTCGTGTAGCACAGACCCAT+TGG 0.485171 tig0022193:-27494 None:intergenic
GGAAAGAAGGGTGGAGACCT+TGG 0.487014 tig0022193:+30174 Msa1397810:CDS
ATGTGATTCCTCGTCTCGAC+TGG 0.487810 tig0022193:+27522 Msa1397810:five_prime_UTR
GTCAAAGGGTAAGGGAAAGC+AGG 0.489595 tig0022193:+28974 Msa1397810:CDS
GAGAATGCTTCCAAGGGAAA+AGG 0.493127 tig0022193:+29014 Msa1397810:CDS
TGAATGCCCATCAGGAAAGA+AGG 0.494243 tig0022193:+30161 Msa1397810:CDS
TGAAGGCAACTTCCTGAAAT+GGG 0.494251 tig0022193:-30224 None:intergenic
ATGGTTTCCACGGGGAAAGA+TGG 0.495650 tig0022193:+30197 Msa1397810:CDS
GAGACCTTGGATGGTTTCCA+CGG 0.503599 tig0022193:+30187 Msa1397810:CDS
AACTCCAACAGGTGTGTTGA+AGG 0.504286 tig0022193:-30241 None:intergenic
TCGTGTAGCACAGACCCATT+GGG 0.508316 tig0022193:-27493 None:intergenic
AAGATGGTTGGCTTGACAAT+GGG 0.509183 tig0022193:+29483 Msa1397810:CDS
CGTTGATTTGAAAGGAGCAC+TGG 0.509492 tig0022193:-30265 None:intergenic
TGAATAGTTGTTCGAACGAT+GGG 0.520110 tig0022193:+28930 Msa1397810:intron
AAAGGTGGGAAAGCTGCTGA+TGG 0.525616 tig0022193:+29038 Msa1397810:CDS
GAGCAATACGTTGATTTGAA+AGG 0.530210 tig0022193:-30273 None:intergenic
TTTCCACGGGGAAAGATGGC+TGG 0.533452 tig0022193:+30201 Msa1397810:CDS
GGTACTTGCACTTATGTCAA+AGG 0.560594 tig0022193:+29065 Msa1397810:CDS
AGACCTTGGATGGTTTCCAC+GGG 0.562266 tig0022193:+30188 Msa1397810:CDS
GCTTCCAAGGGAAAAGGAAA+AGG 0.563501 tig0022193:+29020 Msa1397810:CDS
AAGTGATGAGAATGCTTCCA+AGG 0.564213 tig0022193:+29007 Msa1397810:CDS
AGAAGGGTGGAGACCTTGGA+TGG 0.573215 tig0022193:+30178 Msa1397810:CDS
AAATTCAGGAAGAACAATCA+AGG 0.573745 tig0022193:-27574 None:intergenic
TCCAAGGGAAAAGGAAAAGG+TGG 0.576313 tig0022193:+29023 Msa1397810:CDS
GTTGCCTTCAACACACCTGT+TGG 0.577492 tig0022193:+30237 Msa1397810:CDS
ATGAATAGTTGTTCGAACGA+TGG 0.579048 tig0022193:+28929 Msa1397810:intron
GCAAAGGCAAAGGAGTCAAA+GGG 0.585236 tig0022193:+28960 Msa1397810:CDS
AAGGGAAAGCAGGCTGCAAG+TGG 0.585506 tig0022193:+28984 Msa1397810:CDS
CAAGATGGTTGGCTTGACAA+TGG 0.586005 tig0022193:+29482 Msa1397810:CDS
ACAAGAAGCTGCAAGATGGT+TGG 0.586477 tig0022193:+29471 Msa1397810:CDS
GGGAAAAGACGCAAAGGCAA+AGG 0.594129 tig0022193:+28950 Msa1397810:CDS
GAATGCCCATCAGGAAAGAA+GGG 0.596490 tig0022193:+30162 Msa1397810:CDS
GCCTACAAGAAGCTGCAAGA+TGG 0.599336 tig0022193:+29467 Msa1397810:CDS
AAGGTGGGAAAGCTGCTGAT+GGG 0.609652 tig0022193:+29039 Msa1397810:CDS
AACGATGGGAAAAGACGCAA+AGG 0.622639 tig0022193:+28944 Msa1397810:exon
TCCTCCAGCAGAGTTTGCAA+AGG 0.623533 tig0022193:+29514 Msa1397810:CDS
ACCTTTGCAAACTCTGCTGG+AGG 0.624084 tig0022193:-29515 None:intergenic
ATATATAATAACAACTAGAA+GGG 0.625968 tig0022193:-30301 None:intergenic
TTCCCCGTGGAAACCATCCA+AGG 0.629084 tig0022193:-30191 None:intergenic
GCAAAGGAGTCAAAGGGTAA+GGG 0.629245 tig0022193:+28966 Msa1397810:CDS
CATATCTTATGTGAGAAACA+AGG 0.634519 tig0022193:+29431 Msa1397810:CDS
AGTGATGAGAATGCTTCCAA+GGG 0.642736 tig0022193:+29008 Msa1397810:CDS
TGCCCATCAGGAAAGAAGGG+TGG 0.643391 tig0022193:+30165 Msa1397810:CDS
CCAAGGGAAAAGGAAAAGGT+GGG 0.647496 tig0022193:+29024 Msa1397810:CDS
AGATGGTTGGCTTGACAATG+GGG 0.681394 tig0022193:+29484 Msa1397810:CDS
TATTCACACCAGTCGAGACG+AGG 0.685763 tig0022193:-27530 None:intergenic
GGGCCAGCCATCTTTCCCCG+TGG 0.694677 tig0022193:-30204 None:intergenic
GACCTTGGATGGTTTCCACG+GGG 0.727134 tig0022193:+30189 Msa1397810:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATTATTAATAGATGATAAT+TGG + tig0022193:27820-27839 Msa1397810:intron 10.0%
!!! TATTATTATTTTCTTTACTT+TGG + tig0022193:29539-29558 Msa1397810:intron 10.0%
!!! TTTTAAAAGCAAATTTGAAA+CGG - tig0022193:27961-27980 None:intergenic 15.0%
!!! TTCAAATTTGCTTTTAAAAA+TGG + tig0022193:27962-27981 Msa1397810:intron 15.0%
!!! TCAAATTTGCTTTTAAAAAT+GGG + tig0022193:27963-27982 Msa1397810:intron 15.0%
!! ATCCTTATTATTCATTTATA+TGG + tig0022193:28142-28161 Msa1397810:intron 15.0%
!! ATCCATATAAATGAATAATA+AGG - tig0022193:28147-28166 None:intergenic 15.0%
!!! AAATGCTTTTCAAAAATAAA+CGG + tig0022193:29320-29339 Msa1397810:intron 15.0%
!!! ATATTTTGATATCAACAAAT+CGG - tig0022193:29929-29948 None:intergenic 15.0%
!! ATATATAATAACAACTAGAA+GGG - tig0022193:30304-30323 None:intergenic 15.0%
!!! GATTAGTTAGCTTATAATTA+TGG + tig0022193:27760-27779 Msa1397810:intron 20.0%
!! TTAGCTTATAATTATGGTTT+GGG + tig0022193:27766-27785 Msa1397810:intron 20.0%
!! AATTTAGTCCTATAAAATCA+CGG + tig0022193:27996-28015 Msa1397810:intron 20.0%
!!! TTGCAAATAGATTGAAATTT+TGG + tig0022193:29223-29242 Msa1397810:intron 20.0%
!!! TTGTTTTCATTGTTTTTGAA+AGG + tig0022193:29259-29278 Msa1397810:intron 20.0%
!!! AATGCTTTTCAAAAATAAAC+GGG + tig0022193:29321-29340 Msa1397810:intron 20.0%
!! TTAAATAGAAAGCCAAATAA+GGG - tig0022193:29743-29762 None:intergenic 20.0%
!! TTTAAATAGAAAGCCAAATA+AGG - tig0022193:29744-29763 None:intergenic 20.0%
!!! ATTTGGCTTTCTATTTAAAA+TGG + tig0022193:29745-29764 Msa1397810:intron 20.0%
!!! TTTGGCTTTCTATTTAAAAT+GGG + tig0022193:29746-29765 Msa1397810:intron 20.0%
!! CATATATAATAACAACTAGA+AGG - tig0022193:30305-30324 None:intergenic 20.0%
!! TTTTATTCATTTGTGCTTAG+AGG + tig0022193:27613-27632 Msa1397810:five_prime_UTR 25.0%
! TGTAGATTGAAATTCAACTT+GGG - tig0022193:27727-27746 None:intergenic 25.0%
! ATGTAGATTGAAATTCAACT+TGG - tig0022193:27728-27747 None:intergenic 25.0%
!! GTTAGCTTATAATTATGGTT+TGG + tig0022193:27765-27784 Msa1397810:intron 25.0%
! ATTTAGTCCTATAAAATCAC+GGG + tig0022193:27997-28016 Msa1397810:intron 25.0%
! AAAAAGGACTAAATCATCTA+AGG - tig0022193:28037-28056 None:intergenic 25.0%
!! AGATGATTTAGTCCTTTTTA+AGG + tig0022193:28038-28057 Msa1397810:intron 25.0%
! TTATCTCTATGGATATCAAA+TGG + tig0022193:28565-28584 Msa1397810:intron 25.0%
! AATAAATCAGAAACTAACTC+TGG + tig0022193:28714-28733 Msa1397810:intron 25.0%
! AATTTCTTCATCTTCTATGT+TGG - tig0022193:28803-28822 None:intergenic 25.0%
! GTTGAAGTGAAAATAAAAAC+AGG - tig0022193:29145-29164 None:intergenic 25.0%
! AACTGTAAAATGAACATAGT+GGG - tig0022193:29202-29221 None:intergenic 25.0%
! AAACTGTAAAATGAACATAG+TGG - tig0022193:29203-29222 None:intergenic 25.0%
!! ATGCTTTTCAAAAATAAACG+GGG + tig0022193:29322-29341 Msa1397810:intron 25.0%
! CGTAGAATTACATTCATTTA+TGG + tig0022193:29387-29406 Msa1397810:intron 25.0%
! TATACACTAGGATAAAACAT+AGG + tig0022193:29566-29585 Msa1397810:intron 25.0%
!! ACTGCTTGGAAATTTTTAAA+AGG + tig0022193:29637-29656 Msa1397810:intron 25.0%
!!! CTGCTTGGAAATTTTTAAAA+GGG + tig0022193:29638-29657 Msa1397810:intron 25.0%
!! TTGGCTTTCTATTTAAAATG+GGG + tig0022193:29747-29766 Msa1397810:intron 25.0%
! GAAACTTATTATGTGGTAAA+TGG + tig0022193:29774-29793 Msa1397810:intron 25.0%
AAATTCAGGAAGAACAATCA+AGG - tig0022193:27577-27596 None:intergenic 30.0%
AACAGTGAACTGAAACAAAA+AGG - tig0022193:27660-27679 None:intergenic 30.0%
! TTGAAAACCCGTGATTTTAT+AGG - tig0022193:28007-28026 None:intergenic 30.0%
TTGGTTGCATAATATATGCA+TGG - tig0022193:28099-28118 None:intergenic 30.0%
TCATTGAAAAAAAGTCTACG+AGG + tig0022193:28310-28329 Msa1397810:intron 30.0%
ATGAATGTTGCTAGTCATTT+CGG + tig0022193:28465-28484 Msa1397810:intron 30.0%
AGATTACAGTTAGAATCAGT+TGG - tig0022193:28692-28711 None:intergenic 30.0%
ACTGTAAAATGAACATAGTG+GGG - tig0022193:29201-29220 None:intergenic 30.0%
CATATCTTATGTGAGAAACA+AGG + tig0022193:29431-29450 Msa1397810:CDS 30.0%
! TACTTTGGAAGTTATACACT+AGG + tig0022193:29554-29573 Msa1397810:intron 30.0%
AAAAAGAGACTATAACTGCT+TGG + tig0022193:29623-29642 Msa1397810:intron 30.0%
GTATACACTAAACCCTTATT+TGG + tig0022193:29728-29747 Msa1397810:intron 30.0%
!! ACATGCATATGTATTTTGGA+GGG - tig0022193:30018-30037 None:intergenic 30.0%
! ACTGACATGCATATGTATTT+TGG - tig0022193:30022-30041 None:intergenic 30.0%
GTTGCAGAGTTTAGAAATTC+AGG - tig0022193:27591-27610 None:intergenic 35.0%
TCAACTTGGGTTTCAGAAAA+TGG - tig0022193:27714-27733 None:intergenic 35.0%
!!! TCCTTTTTAAGGTGAATGAG+TGG + tig0022193:28049-28068 Msa1397810:intron 35.0%
!!! CCTTTTTAAGGTGAATGAGT+GGG + tig0022193:28050-28069 Msa1397810:intron 35.0%
!!! CTTTTTAAGGTGAATGAGTG+GGG + tig0022193:28051-28070 Msa1397810:intron 35.0%
! CATAATATATGCATGGACTG+GGG - tig0022193:28092-28111 None:intergenic 35.0%
GCATAATATATGCATGGACT+GGG - tig0022193:28093-28112 None:intergenic 35.0%
TGCATAATATATGCATGGAC+TGG - tig0022193:28094-28113 None:intergenic 35.0%
ATGCTGATGCTAAACATGAA+AGG + tig0022193:28212-28231 Msa1397810:intron 35.0%
CTAGCTAACCTTTGAATAAG+TGG + tig0022193:28270-28289 Msa1397810:intron 35.0%
TCACAACTCAATTTCAGTCA+AGG - tig0022193:28363-28382 None:intergenic 35.0%
! TTGAGTTGTGAAACTTAGAC+AGG + tig0022193:28372-28391 Msa1397810:intron 35.0%
!!! TTACTGATTTTGCTTTCTCC+AGG + tig0022193:28395-28414 Msa1397810:intron 35.0%
ATGAAGATTACACTTACACC+TGG - tig0022193:28416-28435 None:intergenic 35.0%
! TCTATATGTGCTCGTTTTGT+TGG + tig0022193:28538-28557 Msa1397810:intron 35.0%
!! CTATATGTGCTCGTTTTGTT+GGG + tig0022193:28539-28558 Msa1397810:intron 35.0%
! TTGTTGGGTTGTTATCTCTA+TGG + tig0022193:28554-28573 Msa1397810:intron 35.0%
TAGGTATCAAAACGAAAACG+TGG + tig0022193:28608-28627 Msa1397810:intron 35.0%
! AGAAAGCGTGTTTAACACTA+CGG + tig0022193:28646-28665 Msa1397810:intron 35.0%
ATGAATAGTTGTTCGAACGA+TGG + tig0022193:28929-28948 Msa1397810:intron 35.0%
TGAATAGTTGTTCGAACGAT+GGG + tig0022193:28930-28949 Msa1397810:intron 35.0%
ATTGAAGTAAATGAACCCTG+AGG - tig0022193:29117-29136 None:intergenic 35.0%
TGAAAGAAATTTAGCGTGTC+TGG - tig0022193:29357-29376 None:intergenic 35.0%
GGAAGGGGATAAAATAACTA+TGG - tig0022193:29807-29826 None:intergenic 35.0%
!! ATGCATATGTATTTTGGAGG+GGG - tig0022193:30016-30035 None:intergenic 35.0%
!! CATGCATATGTATTTTGGAG+GGG - tig0022193:30017-30036 None:intergenic 35.0%
!! GACATGCATATGTATTTTGG+AGG - tig0022193:30019-30038 None:intergenic 35.0%
!! GAGCAATACGTTGATTTGAA+AGG - tig0022193:30276-30295 None:intergenic 35.0%
AAGCTGAAATGCAAGTTGCT+AGG - tig0022193:27902-27921 None:intergenic 40.0%
CCCACTCATTCACCTTAAAA+AGG - tig0022193:28053-28072 None:intergenic 40.0%
AACCAACTGAGCTATGATCA+CGG + tig0022193:28113-28132 Msa1397810:intron 40.0%
CATAAGCGCCACTTATTCAA+AGG - tig0022193:28281-28300 None:intergenic 40.0%
AAAGTCTACGAGGTCTTCTT+AGG + tig0022193:28320-28339 Msa1397810:intron 40.0%
! TCAAGGTGTTCAACCAAATG+TGG - tig0022193:28346-28365 None:intergenic 40.0%
TGGAGCTCGTGAATCAATTT+CGG + tig0022193:28507-28526 Msa1397810:intron 40.0%
!! TGACGTCGATTTCTTTAGCT+AGG + tig0022193:28589-28608 Msa1397810:intron 40.0%
GTGGAGATTGTTAGATGATC+AGG - tig0022193:28756-28775 None:intergenic 40.0%
TATCACACATCAGGTTACAG+TGG - tig0022193:28775-28794 None:intergenic 40.0%
TTGGATGTCTATCACACATC+AGG - tig0022193:28784-28803 None:intergenic 40.0%
AAGTGATGAGAATGCTTCCA+AGG + tig0022193:29007-29026 Msa1397810:CDS 40.0%
AGTGATGAGAATGCTTCCAA+GGG + tig0022193:29008-29027 Msa1397810:CDS 40.0%
GGTACTTGCACTTATGTCAA+AGG + tig0022193:29065-29084 Msa1397810:CDS 40.0%
! GAACATAGTGGGGAAACTAT+TGG - tig0022193:29191-29210 None:intergenic 40.0%
!! AAGATGGTTGGCTTGACAAT+GGG + tig0022193:29483-29502 Msa1397810:CDS 40.0%
TATACCTTTGCAAACTCTGC+TGG - tig0022193:29521-29540 None:intergenic 40.0%
GGGCTGAGAAACTTATTATG+TGG + tig0022193:29767-29786 Msa1397810:intron 40.0%
GCATTGAATCCATTTCTGAG+CGG - tig0022193:29828-29847 None:intergenic 40.0%
GTCAGTAAATACCCGTCAAT+GGG - tig0022193:29976-29995 None:intergenic 40.0%
!! TGCATATGTATTTTGGAGGG+GGG - tig0022193:30015-30034 None:intergenic 40.0%
!! ATGCATGTCAGTTTTGTCGA+AGG + tig0022193:30030-30049 Msa1397810:intron 40.0%
TGAAGGCAACTTCCTGAAAT+GGG - tig0022193:30227-30246 None:intergenic 40.0%
TTGAAGGCAACTTCCTGAAA+TGG - tig0022193:30228-30247 None:intergenic 40.0%
AGGTTTGAATTTGGGCCCAA+TGG + tig0022193:27478-27497 Msa1397810:five_prime_UTR 45.0%
GGTTTGAATTTGGGCCCAAT+GGG + tig0022193:27479-27498 Msa1397810:five_prime_UTR 45.0%
TACAGTAGCACCATCACTAG+CGG + tig0022193:27921-27940 Msa1397810:intron 45.0%
ACCAACTGAGCTATGATCAC+GGG + tig0022193:28114-28133 Msa1397810:intron 45.0%
AGGTCTTCTTAGGCCACATT+TGG + tig0022193:28330-28349 Msa1397810:intron 45.0%
GTACGAGTCATGTGTTTGTC+TGG + tig0022193:28487-28506 Msa1397810:intron 45.0%
AACGATGGGAAAAGACGCAA+AGG + tig0022193:28944-28963 Msa1397810:exon 45.0%
GCAAAGGCAAAGGAGTCAAA+GGG + tig0022193:28960-28979 Msa1397810:CDS 45.0%
GCAAAGGAGTCAAAGGGTAA+GGG + tig0022193:28966-28985 Msa1397810:CDS 45.0%
GAGAATGCTTCCAAGGGAAA+AGG + tig0022193:29014-29033 Msa1397810:CDS 45.0%
GCTTCCAAGGGAAAAGGAAA+AGG + tig0022193:29020-29039 Msa1397810:CDS 45.0%
TCCAAGGGAAAAGGAAAAGG+TGG + tig0022193:29023-29042 Msa1397810:CDS 45.0%
CCAAGGGAAAAGGAAAAGGT+GGG + tig0022193:29024-29043 Msa1397810:CDS 45.0%
ACCATCTTGCAGCTTCTTGT+AGG - tig0022193:29471-29490 None:intergenic 45.0%
ACAAGAAGCTGCAAGATGGT+TGG + tig0022193:29471-29490 Msa1397810:CDS 45.0%
!! CAAGATGGTTGGCTTGACAA+TGG + tig0022193:29482-29501 Msa1397810:CDS 45.0%
!! AGATGGTTGGCTTGACAATG+GGG + tig0022193:29484-29503 Msa1397810:CDS 45.0%
! TTGGCTTGACAATGGGGATA+AGG + tig0022193:29490-29509 Msa1397810:CDS 45.0%
AATCCATTTCTGAGCGGAAG+GGG - tig0022193:29822-29841 None:intergenic 45.0%
GAATCCATTTCTGAGCGGAA+GGG - tig0022193:29823-29842 None:intergenic 45.0%
TGAATCCATTTCTGAGCGGA+AGG - tig0022193:29824-29843 None:intergenic 45.0%
ACAGCTGAATTCAAGACTGC+TGG - tig0022193:29862-29881 None:intergenic 45.0%
GCAGTCTTGAATTCAGCTGT+AGG + tig0022193:29862-29881 Msa1397810:intron 45.0%
CTGCATACAATGCCCATTGA+CGG + tig0022193:29961-29980 Msa1397810:intron 45.0%
TGCATACAATGCCCATTGAC+GGG + tig0022193:29962-29981 Msa1397810:intron 45.0%
GGTCAGTAAATACCCGTCAA+TGG - tig0022193:29977-29996 None:intergenic 45.0%
GAGTATTCTGAATGCCCATC+AGG + tig0022193:30153-30172 Msa1397810:CDS 45.0%
TGAATGCCCATCAGGAAAGA+AGG + tig0022193:30161-30180 Msa1397810:CDS 45.0%
GAATGCCCATCAGGAAAGAA+GGG + tig0022193:30162-30181 Msa1397810:CDS 45.0%
AACTCCAACAGGTGTGTTGA+AGG - tig0022193:30244-30263 None:intergenic 45.0%
!! CGTTGATTTGAAAGGAGCAC+TGG - tig0022193:30268-30287 None:intergenic 45.0%
TCGTGTAGCACAGACCCATT+GGG - tig0022193:27496-27515 None:intergenic 50.0%
TTCGTGTAGCACAGACCCAT+TGG - tig0022193:27497-27516 None:intergenic 50.0%
TGGGTCTGTGCTACACGAAA+TGG + tig0022193:27498-27517 Msa1397810:five_prime_UTR 50.0%
ATGTGATTCCTCGTCTCGAC+TGG + tig0022193:27522-27541 Msa1397810:five_prime_UTR 50.0%
TATTCACACCAGTCGAGACG+AGG - tig0022193:27533-27552 None:intergenic 50.0%
CCAACTGAGCTATGATCACG+GGG + tig0022193:28115-28134 Msa1397810:intron 50.0%
GGGAAAAGACGCAAAGGCAA+AGG + tig0022193:28950-28969 Msa1397810:CDS 50.0%
CGCAAAGGCAAAGGAGTCAA+AGG + tig0022193:28959-28978 Msa1397810:CDS 50.0%
GGCAAAGGAGTCAAAGGGTA+AGG + tig0022193:28965-28984 Msa1397810:CDS 50.0%
GTCAAAGGGTAAGGGAAAGC+AGG + tig0022193:28974-28993 Msa1397810:CDS 50.0%
! CCCACCTTTTCCTTTTCCCT+TGG - tig0022193:29027-29046 None:intergenic 50.0%
AAAGGTGGGAAAGCTGCTGA+TGG + tig0022193:29038-29057 Msa1397810:CDS 50.0%
AAGGTGGGAAAGCTGCTGAT+GGG + tig0022193:29039-29058 Msa1397810:CDS 50.0%
! ACCCTGAGGTGCTTGTGAAT+GGG - tig0022193:29103-29122 None:intergenic 50.0%
! AACCCTGAGGTGCTTGTGAA+TGG - tig0022193:29104-29123 None:intergenic 50.0%
GCCTACAAGAAGCTGCAAGA+TGG + tig0022193:29467-29486 Msa1397810:CDS 50.0%
TCCTCCAGCAGAGTTTGCAA+AGG + tig0022193:29514-29533 Msa1397810:CDS 50.0%
ACCTTTGCAAACTCTGCTGG+AGG - tig0022193:29518-29537 None:intergenic 50.0%
TATCCCCTTCCGCTCAGAAA+TGG + tig0022193:29816-29835 Msa1397810:intron 50.0%
GACGGGTATTTACTGACCAC+AGG + tig0022193:29979-29998 Msa1397810:intron 50.0%
!! TGTATTTTGGAGGGGGGATC+AGG - tig0022193:30009-30028 None:intergenic 50.0%
TAATATTTCGCCGACCTCGC+AGG + tig0022193:30122-30141 Msa1397810:intron 50.0%
ATACTCTTGAGCTACCTGCG+AGG - tig0022193:30139-30158 None:intergenic 50.0%
CTCCACCCTTCTTTCCTGAT+GGG - tig0022193:30170-30189 None:intergenic 50.0%
TCTCCACCCTTCTTTCCTGA+TGG - tig0022193:30171-30190 None:intergenic 50.0%
GAGACCTTGGATGGTTTCCA+CGG + tig0022193:30187-30206 Msa1397810:CDS 50.0%
AGACCTTGGATGGTTTCCAC+GGG + tig0022193:30188-30207 Msa1397810:CDS 50.0%
ATGGTTTCCACGGGGAAAGA+TGG + tig0022193:30197-30216 Msa1397810:CDS 50.0%
! AAAGATGGCTGGCCCATTTC+AGG + tig0022193:30212-30231 Msa1397810:CDS 50.0%
GTTGCCTTCAACACACCTGT+TGG + tig0022193:30237-30256 Msa1397810:CDS 50.0%
ACCATCACTAGCGGCTGCTA+CGG + tig0022193:27930-27949 Msa1397810:intron 55.0%
! AGGTGAATGAGTGGGGTGTC+TGG + tig0022193:28058-28077 Msa1397810:intron 55.0%
CCCCGTGATCATAGCTCAGT+TGG - tig0022193:28118-28137 None:intergenic 55.0%
AAGGGAAAGCAGGCTGCAAG+TGG + tig0022193:28984-29003 Msa1397810:CDS 55.0%
TCCCCATTCACAAGCACCTC+AGG + tig0022193:29098-29117 Msa1397810:intron 55.0%
! CCCTGAGGTGCTTGTGAATG+GGG - tig0022193:29102-29121 None:intergenic 55.0%
CCCCATTCACAAGCACCTCA+GGG + tig0022193:29099-29118 Msa1397810:intron 55.0%
TCTTGAGCTACCTGCGAGGT+CGG - tig0022193:30135-30154 None:intergenic 55.0%
TGCCCATCAGGAAAGAAGGG+TGG + tig0022193:30165-30184 Msa1397810:CDS 55.0%
GGAAAGAAGGGTGGAGACCT+TGG + tig0022193:30174-30193 Msa1397810:CDS 55.0%
AGAAGGGTGGAGACCTTGGA+TGG + tig0022193:30178-30197 Msa1397810:CDS 55.0%
GACCTTGGATGGTTTCCACG+GGG + tig0022193:30189-30208 Msa1397810:CDS 55.0%
TTCCCCGTGGAAACCATCCA+AGG - tig0022193:30194-30213 None:intergenic 55.0%
TTTCCACGGGGAAAGATGGC+TGG + tig0022193:30201-30220 Msa1397810:CDS 55.0%
!! GGAGCACTGGTAACTCCAAC+AGG - tig0022193:30255-30274 None:intergenic 55.0%
ACCGTAGCAGCCGCTAGTGA+TGG - tig0022193:27934-27953 None:intergenic 60.0%
!! GGGAAAGCTGCTGATGGGCT+TGG + tig0022193:29044-29063 Msa1397810:CDS 60.0%
GGGGGGATCAGGATTTCCTG+TGG - tig0022193:29998-30017 None:intergenic 60.0%
GGGCCAGCCATCTTTCCCCG+TGG - tig0022193:30207-30226 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
tig0022193 gene 27476 30338 27476 ID=Msa1397810;Name=Msa1397810
tig0022193 mRNA 27476 30338 27476 ID=Msa1397810-mRNA-1;Parent=Msa1397810;Name=Msa1397810-mRNA-1;_AED=0.19;_eAED=0.19;_QI=170|1|0.75|1|0.66|0.5|4|0|147
tig0022193 exon 27476 27634 27476 ID=Msa1397810-mRNA-1:exon:16299;Parent=Msa1397810-mRNA-1
tig0022193 exon 28937 29086 28937 ID=Msa1397810-mRNA-1:exon:16300;Parent=Msa1397810-mRNA-1
tig0022193 exon 29426 29535 29426 ID=Msa1397810-mRNA-1:exon:16301;Parent=Msa1397810-mRNA-1
tig0022193 exon 30144 30338 30144 ID=Msa1397810-mRNA-1:exon:16302;Parent=Msa1397810-mRNA-1
tig0022193 five_prime_UTR 27476 27634 27476 ID=Msa1397810-mRNA-1:five_prime_utr;Parent=Msa1397810-mRNA-1
tig0022193 five_prime_UTR 28937 28947 28937 ID=Msa1397810-mRNA-1:five_prime_utr;Parent=Msa1397810-mRNA-1
tig0022193 CDS 28948 29086 28948 ID=Msa1397810-mRNA-1:cds;Parent=Msa1397810-mRNA-1
tig0022193 CDS 29426 29535 29426 ID=Msa1397810-mRNA-1:cds;Parent=Msa1397810-mRNA-1
tig0022193 CDS 30144 30338 30144 ID=Msa1397810-mRNA-1:cds;Parent=Msa1397810-mRNA-1
Gene Sequence

>Msa1397810

ATGGGAAAAGACGCAAAGGCAAAGGAGTCAAAGGGTAAGGGAAAGCAGGCTGCAAGTGGAAGTGATGAGAATGCTTCCAAGGGAAAAGGAAAAGGTGGGAAAGCTGCTGATGGGCTTGGTACTTGCACTTATGTCAAAGCAAGACATATCTTATGTGAGAAACAAGGTAAGATTAATGAAGCCTACAAGAAGCTGCAAGATGGTTGGCTTGACAATGGGGATAAGGTTCCTCCAGCAGAGTTTGCAAAGGTAGCTCAAGAGTATTCTGAATGCCCATCAGGAAAGAAGGGTGGAGACCTTGGATGGTTTCCACGGGGAAAGATGGCTGGCCCATTTCAGGAAGTTGCCTTCAACACACCTGTTGGAGTTACCAGTGCTCCTTTCAAATCAACGTATTGCTCTCGCACCCTTCTAGTTGTTATTATATATGCATTATTGCTCTGA

Protein sequence

>Msa1397810

MGKDAKAKESKGKGKQAASGSDENASKGKGKGGKAADGLGTCTYVKARHILCEKQGKINEAYKKLQDGWLDNGDKVPPAEFAKVAQEYSECPSGKKGGDLGWFPRGKMAGPFQEVAFNTPVGVTSAPFKSTYCSRTLLVVIIYALLL*