AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1281190

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1281190 MtrunA17_Chr8g0351501 100.000 106 0 0 1 106 1 106 2.35e-76 220
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1281190 AT5G18800.2 85.849 106 15 0 1 106 1 106 2.90e-65 192
Msa1281190 AT5G18800.1 85.849 106 15 0 1 106 1 106 2.90e-65 192
Msa1281190 AT3G06310.1 79.048 105 22 0 2 106 4 108 1.31e-60 181
Msa1281190 AT3G06310.3 79.048 105 22 0 2 106 4 108 1.31e-60 181
Msa1281190 AT3G06310.2 77.419 62 14 0 2 63 4 65 8.48e-32 107

Find 98 sgRNAs with CRISPR-Local

Find 423 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGGAAATTAGGGAGTAAAAT+AGG 0.140805 8_3:-20579849 None:intergenic
GACAAAAGATCAAATGAATT+TGG 0.156685 8_3:-20586439 None:intergenic
CCATCTCCTTTGTGCACTTT+TGG 0.157227 8_3:-20586251 None:intergenic
AGTAAAATAGGGAGTAAAAT+AGG 0.198627 8_3:-20579837 None:intergenic
TACGTCTGTAGCATCAAATT+TGG 0.230060 8_3:+20580162 Msa1281190:five_prime_UTR
AGGAACATAGGGAGGAAATT+AGG 0.232929 8_3:-20579861 None:intergenic
AATAATATCACAGGGCAATT+TGG 0.235688 8_3:+20586394 Msa1281190:three_prime_UTR
GCGCGGTTCGGTTCGGTTCA+TGG 0.236853 8_3:+20579593 Msa1281190:five_prime_UTR
AAACAAGTTCCATGACTTAA+AGG 0.239161 8_3:-20579736 None:intergenic
AAGATGTCATTCGGAGAATT+TGG 0.243844 8_3:+20582689 Msa1281190:CDS
GTTGGTAGTCTAAATGCTTC+TGG 0.304274 8_3:+20586495 Msa1281190:three_prime_UTR
GGAACATAGGGAGGAAATTA+GGG 0.304743 8_3:-20579860 None:intergenic
CCCAACATCTGCTGTATTGA+TGG 0.328434 8_3:+20582644 Msa1281190:CDS
CGGTTCGTGAACCATTATAA+TGG 0.328516 8_3:+20579537 Msa1281190:five_prime_UTR
GGTTCAAGATGGTTCGGTTA+TGG 0.330685 8_3:+20579486 Msa1281190:five_prime_UTR
AGGAAGAAAGATTAAAATAA+AGG 0.336929 8_3:-20579716 None:intergenic
CTCACGACCGCGACTAATCT+TGG 0.347359 8_3:-20581828 None:intergenic
CAAATGCTTCCTGCTCTTTG+CGG 0.352587 8_3:-20586323 None:intergenic
ATCAAATGAATTTGGGAAAC+AGG 0.360204 8_3:-20586431 None:intergenic
TGCTCTAAACTAAGACTGTT+TGG 0.367685 8_3:+20586817 Msa1281190:three_prime_UTR
AAGAACTGTTAATAAATTAA+CGG 0.370074 8_3:+20579512 Msa1281190:five_prime_UTR
ACTCCTCACAAGTGTGTCTT+AGG 0.371459 8_3:+20581854 Msa1281190:five_prime_UTR
GTGGGTCTTGAGAGATTTGC+TGG 0.384850 8_3:+20580188 Msa1281190:five_prime_UTR
TCCATTCTTTATGGTGGAAC+GGG 0.384863 8_3:+20579652 Msa1281190:five_prime_UTR
GGAAATTAGGGAGTAAAATA+GGG 0.386752 8_3:-20579848 None:intergenic
ACAAAAGATCAAATGAATTT+GGG 0.389383 8_3:-20586438 None:intergenic
ATAAAGGAAAAGTGAGTTGA+TGG 0.396443 8_3:-20579700 None:intergenic
TCGGTTCGGTTCGCGCGGTT+CGG 0.401025 8_3:+20579581 Msa1281190:five_prime_UTR
AAATAACCGAACCATTATAA+TGG 0.401859 8_3:-20579548 None:intergenic
TCATGTGTTTGTTCACTTTG+TGG 0.408772 8_3:+20586772 Msa1281190:three_prime_UTR
AGGTCATAATCGTTGTAGTT+TGG 0.415899 8_3:-20586667 None:intergenic
TCCTGAAAAGTGCCTTGATA+AGG 0.418124 8_3:+20582743 Msa1281190:CDS
CAATTAGCAGGCAATTATAT+AGG 0.422300 8_3:-20579911 None:intergenic
ACGTCTGTAGCATCAAATTT+GGG 0.426687 8_3:+20580163 Msa1281190:five_prime_UTR
CGTGAACCATTATAATGGTT+CGG 0.427315 8_3:+20579542 Msa1281190:five_prime_UTR
GATGTTACTCGCTGTGTCCT+TGG 0.430847 8_3:+20582771 Msa1281190:CDS
TATTCTCTCTTCTCCCCTTA+CGG 0.432452 8_3:-20579936 None:intergenic
CCCCTTACGGCACAATTAGC+AGG 0.435170 8_3:-20579923 None:intergenic
GTAAAATAGGGAGTAAAATA+GGG 0.437649 8_3:-20579836 None:intergenic
ATAAGTCGAATTCATTTGTA+TGG 0.438882 8_3:-20586299 None:intergenic
ATCTTTCTTCCTTTAAGTCA+TGG 0.444597 8_3:+20579727 Msa1281190:five_prime_UTR
ACAGTTTAAGTGGTTTGGTT+CGG 0.453633 8_3:+20579446 Msa1281190:five_prime_UTR
CTGTTAATAAATTAACGGTT+CGG 0.454105 8_3:+20579517 Msa1281190:five_prime_UTR
TTGGTTCGGTTCAAACGGTT+CGG 0.462951 8_3:+20579460 Msa1281190:five_prime_UTR
TCGGTTCGCGCGGTTCGGTT+CGG 0.470265 8_3:+20579586 Msa1281190:five_prime_UTR
CATTGGGTTAAGATGTCATT+CGG 0.471473 8_3:+20582680 Msa1281190:CDS
GTGGTTTGGTTCGGTTCAAA+CGG 0.471559 8_3:+20579455 Msa1281190:five_prime_UTR
TCGGTTCAAACGGTTCGGTT+CGG 0.473246 8_3:+20579465 Msa1281190:five_prime_UTR
CGTGAATGAGTGGGAGGGAG+AGG 0.476805 8_3:-20579800 None:intergenic
TTCCATTCTTTATGGTGGAA+CGG 0.480285 8_3:+20579651 Msa1281190:five_prime_UTR
GATGGAGAACATTTAGCAGC+TGG 0.480525 8_3:-20579682 None:intergenic
ATTGTTGAAAATAATATCAC+AGG 0.482137 8_3:+20586385 Msa1281190:three_prime_UTR
CGGTTCGGTTCAAGATGGTT+CGG 0.482270 8_3:+20579480 Msa1281190:five_prime_UTR
TCCCGTTCCACCATAAAGAA+TGG 0.485370 8_3:-20579653 None:intergenic
CGACTTATGCCGCAAAGAGC+AGG 0.487600 8_3:+20586314 Msa1281190:CDS
CGGTTCGGTTCGGTTCAAGA+TGG 0.491657 8_3:+20579475 Msa1281190:five_prime_UTR
CCTGAAAAGTGCCTTGATAA+GGG 0.493225 8_3:+20582744 Msa1281190:CDS
CAGTACATGTTGAGGAAAAG+AGG 0.493850 8_3:-20579881 None:intergenic
TGCCTGCTAATTGTGCCGTA+AGG 0.502640 8_3:+20579921 Msa1281190:five_prime_UTR
TGGCATCTTCGAAGCACATT+GGG 0.505873 8_3:+20582664 Msa1281190:CDS
GTTGAGGAAAAGAGGAACAT+AGG 0.507987 8_3:-20579873 None:intergenic
GCCATCAATACAGCAGATGT+TGG 0.509819 8_3:-20582645 None:intergenic
TCGAGTGCTGTAGATGCTGC+TGG 0.511264 8_3:+20582612 Msa1281190:CDS
ATCTTTACCATTGACTATGT+TGG 0.515946 8_3:+20586477 Msa1281190:three_prime_UTR
GCCTGCTAATTGTGCCGTAA+GGG 0.516385 8_3:+20579922 Msa1281190:five_prime_UTR
CCATCAATACAGCAGATGTT+GGG 0.517983 8_3:-20582644 None:intergenic
ATACAGCAGATGTTGGGATC+GGG 0.526916 8_3:-20582638 None:intergenic
CCAAAAGTGCACAAAGGAGA+TGG 0.538195 8_3:+20586251 Msa1281190:CDS
TAACATCACGTCCCTTATCA+AGG 0.539105 8_3:-20582755 None:intergenic
AGGAAAAGAGGAACATAGGG+AGG 0.548458 8_3:-20579869 None:intergenic
TTGAGGAAAAGAGGAACATA+GGG 0.548770 8_3:-20579872 None:intergenic
TCTGCGATAACATCTTGTGT+TGG 0.550933 8_3:+20586732 Msa1281190:three_prime_UTR
GTAGCATCAAATTTGGGAAG+TGG 0.555690 8_3:+20580169 Msa1281190:five_prime_UTR
ATGGCATCTTCGAAGCACAT+TGG 0.556797 8_3:+20582663 Msa1281190:CDS
GAAAACAATGAGACAAAACT+AGG 0.558683 8_3:-20579631 None:intergenic
TAGCATCAAATTTGGGAAGT+GGG 0.558872 8_3:+20580170 Msa1281190:five_prime_UTR
AGAGTATACACGTGAATGAG+TGG 0.559403 8_3:-20579810 None:intergenic
TAGACTACCAACATAGTCAA+TGG 0.563567 8_3:-20586484 None:intergenic
AATACAGCAGATGTTGGGAT+CGG 0.570889 8_3:-20582639 None:intergenic
AGATTAGTCGCGGTCGTGAG+TGG 0.572168 8_3:+20581831 Msa1281190:five_prime_UTR
CAATGAGACAAAACTAGGGG+TGG 0.580977 8_3:-20579626 None:intergenic
CCTGCTAATTGTGCCGTAAG+GGG 0.583000 8_3:+20579923 Msa1281190:five_prime_UTR
AAAACAATGAGACAAAACTA+GGG 0.587258 8_3:-20579630 None:intergenic
TGTGTTTGTTCACTTTGTGG+AGG 0.603174 8_3:+20586775 Msa1281190:three_prime_UTR
GAATTTAACAGTACATGTTG+AGG 0.605024 8_3:-20579889 None:intergenic
TCGGTTCGGTTCGGTTCGCG+CGG 0.610628 8_3:+20579576 Msa1281190:five_prime_UTR
GAGTATACACGTGAATGAGT+GGG 0.616212 8_3:-20579809 None:intergenic
TGGGTCTTGAGAGATTTGCT+GGG 0.636698 8_3:+20580189 Msa1281190:five_prime_UTR
AATGAGACAAAACTAGGGGT+GGG 0.642743 8_3:-20579625 None:intergenic
GCACCTAAGACACACTTGTG+AGG 0.650763 8_3:-20581857 None:intergenic
TATACACGTGAATGAGTGGG+AGG 0.656414 8_3:-20579806 None:intergenic
TTGTTGAAAATAATATCACA+GGG 0.662122 8_3:+20586386 Msa1281190:three_prime_UTR
CAGGTAACCAAGATTAGTCG+CGG 0.686815 8_3:+20581821 Msa1281190:intron
ATACACGTGAATGAGTGGGA+GGG 0.699195 8_3:-20579805 None:intergenic
CACTTTGTGGAGGAACAATG+TGG 0.705871 8_3:+20586785 Msa1281190:three_prime_UTR
TCTACACCAAAAGTGCACAA+AGG 0.729329 8_3:+20586245 Msa1281190:CDS
AAACAATGAGACAAAACTAG+GGG 0.729842 8_3:-20579629 None:intergenic
AAGGAGATGGATGATTACGT+CGG 0.730179 8_3:+20586264 Msa1281190:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATATATATATATATATATA+TGG - chr8_3:20580031-20580050 None:intergenic 0.0%
!!! ATAAGTAGTTTTTTAAAATA+AGG + chr8_3:20579050-20579069 Msa1281190:five_prime_UTR 10.0%
!!! ATAAGTTGTTTTTTAAAATA+AGG + chr8_3:20579100-20579119 Msa1281190:intron 10.0%
!!! TTTAAATAAGTTGTTTTTTT+TGG + chr8_3:20579375-20579394 Msa1281190:five_prime_UTR 10.0%
!!! CTGTTTTTTTTTTTTTTTTA+AGG - chr8_3:20579430-20579449 None:intergenic 10.0%
!! ATATATATATATATATGGTA+AGG - chr8_3:20580026-20580045 None:intergenic 10.0%
!! TTTATAGTATAAATAATAGT+TGG - chr8_3:20580629-20580648 None:intergenic 10.0%
!!! TTATTAAGAAATTTTTATGT+CGG + chr8_3:20582153-20582172 Msa1281190:intron 10.0%
!!! TTTTTAAATACAAAGTTATT+TGG - chr8_3:20582258-20582277 None:intergenic 10.0%
!!! CTGTTTTTATTTTAAAAATT+TGG + chr8_3:20583652-20583671 Msa1281190:intron 10.0%
!! GAAAATTTAATCTTTATTAA+CGG + chr8_3:20583890-20583909 Msa1281190:intron 10.0%
!!! TTTTTTTTAATAGTTTTTCT+AGG - chr8_3:20584180-20584199 None:intergenic 10.0%
!!! TGATTTGTTTTTATTTAATA+TGG - chr8_3:20584867-20584886 None:intergenic 10.0%
!! CAGTAAAAAAAAAATTAATA+AGG - chr8_3:20585347-20585366 None:intergenic 10.0%
!!! CTTATTAATTTTTTTTTTAC+TGG + chr8_3:20585345-20585364 Msa1281190:intron 10.0%
!! TAAATATAATTTCATCATAA+TGG + chr8_3:20585467-20585486 Msa1281190:intron 10.0%
!!! ATGTTTTTTTATAATTTATC+AGG + chr8_3:20585550-20585569 Msa1281190:intron 10.0%
!!! AATAAGCTGTTTTTAAAATA+AGG + chr8_3:20579316-20579335 Msa1281190:five_prime_UTR 15.0%
!! AAAAAAAAAAACAGTTTAAG+TGG + chr8_3:20579436-20579455 Msa1281190:five_prime_UTR 15.0%
!! AAGAACTGTTAATAAATTAA+CGG + chr8_3:20579512-20579531 Msa1281190:five_prime_UTR 15.0%
!!! TATTAAGAAATTTTTATGTC+GGG + chr8_3:20582154-20582173 Msa1281190:intron 15.0%
!! AATGAAATTGAAATTGAAAA+TGG - chr8_3:20582441-20582460 None:intergenic 15.0%
!! AAAGACATAACATAAATTAA+GGG - chr8_3:20583177-20583196 None:intergenic 15.0%
!! TTAAAATAAAAACAGAAGAT+CGG - chr8_3:20583647-20583666 None:intergenic 15.0%
!! AGCATTTGAAAATATTATAT+TGG + chr8_3:20583733-20583752 Msa1281190:intron 15.0%
!! CGATAATAATTACAAAATAT+TGG - chr8_3:20584421-20584440 None:intergenic 15.0%
!! AAATTTAATATATAGGAAGA+AGG - chr8_3:20584749-20584768 None:intergenic 15.0%
!! TAAATCAAGAAATATTTACA+AGG + chr8_3:20584989-20585008 Msa1281190:intron 15.0%
!!! TAATTTCTCCTTTTTTTTTA+TGG + chr8_3:20585395-20585414 Msa1281190:intron 15.0%
!!! TACAATTTAGTTTTCTATAT+AGG - chr8_3:20585829-20585848 None:intergenic 15.0%
!! AGGAAGAAAGATTAAAATAA+AGG - chr8_3:20579719-20579738 None:intergenic 20.0%
!! AATATATAGACTAAAAGAGA+GGG - chr8_3:20580002-20580021 None:intergenic 20.0%
!! AAATATATAGACTAAAAGAG+AGG - chr8_3:20580003-20580022 None:intergenic 20.0%
!! TATATATCACAATTAAACCA+CGG - chr8_3:20580467-20580486 None:intergenic 20.0%
!! ATAGTATAAATAATAGTTGG+AGG - chr8_3:20580626-20580645 None:intergenic 20.0%
!! TCTTCTTAAAATAATACGTA+AGG - chr8_3:20581926-20581945 None:intergenic 20.0%
!! TCAACAACTTAAATAATCTT+TGG - chr8_3:20582006-20582025 None:intergenic 20.0%
!!! TCTTTTCACAAAATCTTAAA+CGG - chr8_3:20582096-20582115 None:intergenic 20.0%
!! TTAAATACAAAGTTATTTGG+TGG - chr8_3:20582255-20582274 None:intergenic 20.0%
!! AATTGAAAATTTGGGAAAAT+GGG - chr8_3:20582472-20582491 None:intergenic 20.0%
!! AAATTGAAAATTTGGGAAAA+TGG - chr8_3:20582473-20582492 None:intergenic 20.0%
!!! AAAATTGTTATGTGATTTTC+TGG - chr8_3:20582547-20582566 None:intergenic 20.0%
!!! AAATCACATAACAATTTTCT+CGG + chr8_3:20582549-20582568 Msa1281190:intron 20.0%
!!! TTTTGTTGATTTTGTTTATG+TGG + chr8_3:20582836-20582855 Msa1281190:intron 20.0%
!!! TTTCTCAAAACTAGTTTTAT+TGG + chr8_3:20582929-20582948 Msa1281190:intron 20.0%
!!! TTCTCAAAACTAGTTTTATT+GGG + chr8_3:20582930-20582949 Msa1281190:intron 20.0%
!!! TTGCATAAACTATTTTTCAT+AGG + chr8_3:20583125-20583144 Msa1281190:intron 20.0%
!! CAAAGACATAACATAAATTA+AGG - chr8_3:20583178-20583197 None:intergenic 20.0%
!! TTATGTTATGTCTTTGAATT+TGG + chr8_3:20583182-20583201 Msa1281190:intron 20.0%
!! TATGTTATGTCTTTGAATTT+GGG + chr8_3:20583183-20583202 Msa1281190:intron 20.0%
!!! TTTGATACCAATTTAGATTT+TGG + chr8_3:20583400-20583419 Msa1281190:intron 20.0%
!!! TTGATACCAATTTAGATTTT+GGG + chr8_3:20583401-20583420 Msa1281190:intron 20.0%
!! TGAAAAATGTGTTTATAAGT+AGG - chr8_3:20583478-20583497 None:intergenic 20.0%
!!! TACTTATAAACACATTTTTC+AGG + chr8_3:20583477-20583496 Msa1281190:intron 20.0%
!! CATTATGTTATCAATAAGTT+GGG + chr8_3:20583529-20583548 Msa1281190:intron 20.0%
!! ATTATGTTATCAATAAGTTG+GGG + chr8_3:20583530-20583549 Msa1281190:intron 20.0%
!! ATTTGTTTATTGATACAACA+AGG + chr8_3:20583837-20583856 Msa1281190:intron 20.0%
!! TGATATATGAATGAACATTA+TGG + chr8_3:20584231-20584250 Msa1281190:intron 20.0%
!!! TTATCGTCATTATATTTTCT+TGG + chr8_3:20584435-20584454 Msa1281190:intron 20.0%
!! GTTATTGCATTATAAACAAT+TGG + chr8_3:20584642-20584661 Msa1281190:intron 20.0%
!! AGGACTCAAATTTAATATAT+AGG - chr8_3:20584756-20584775 None:intergenic 20.0%
!! TTGCATATTTAATAATCTTG+TGG + chr8_3:20585116-20585135 Msa1281190:intron 20.0%
!!! TTAAAAGTACCATATTTTGA+TGG + chr8_3:20585253-20585272 Msa1281190:intron 20.0%
!! TTCTATCAAAAACCATATTA+CGG - chr8_3:20585602-20585621 None:intergenic 20.0%
!! ACTAGTTAATAAAAGCAATT+AGG - chr8_3:20585892-20585911 None:intergenic 20.0%
!!! ATTCATTTTGATTTGGTTTT+TGG - chr8_3:20585939-20585958 None:intergenic 20.0%
!! ACCAAATCAAAATGAATAAT+AGG + chr8_3:20585942-20585961 Msa1281190:intron 20.0%
!!! TCCTATTATTCATTTTGATT+TGG - chr8_3:20585946-20585965 None:intergenic 20.0%
!! ATTTGAGAAAAAATGTTCTT+TGG + chr8_3:20586341-20586360 Msa1281190:CDS 20.0%
!! ATTGTTGAAAATAATATCAC+AGG + chr8_3:20586385-20586404 Msa1281190:three_prime_UTR 20.0%
!! TTGTTGAAAATAATATCACA+GGG + chr8_3:20586386-20586405 Msa1281190:three_prime_UTR 20.0%
!! ACAAAAGATCAAATGAATTT+GGG - chr8_3:20586441-20586460 None:intergenic 20.0%
! AAAAAACAGTTTAAGTGGTT+TGG + chr8_3:20579441-20579460 Msa1281190:five_prime_UTR 25.0%
! CTGTTAATAAATTAACGGTT+CGG + chr8_3:20579517-20579536 Msa1281190:five_prime_UTR 25.0%
! AAATAACCGAACCATTATAA+TGG - chr8_3:20579551-20579570 None:intergenic 25.0%
!!! TATAATGGTTCGGTTATTTT+TGG + chr8_3:20579552-20579571 Msa1281190:five_prime_UTR 25.0%
! AAAACAATGAGACAAAACTA+GGG - chr8_3:20579633-20579652 None:intergenic 25.0%
!! TCATTGTTTTCCATTCTTTA+TGG + chr8_3:20579643-20579662 Msa1281190:five_prime_UTR 25.0%
! GTAAAATAGGGAGTAAAATA+GGG - chr8_3:20579839-20579858 None:intergenic 25.0%
! AGTAAAATAGGGAGTAAAAT+AGG - chr8_3:20579840-20579859 None:intergenic 25.0%
! ATATATAGACTAAAAGAGAG+GGG - chr8_3:20580001-20580020 None:intergenic 25.0%
! TTGTGAGATTATGAGAAATA+AGG + chr8_3:20580301-20580320 Msa1281190:intron 25.0%
! TGTGAGATTATGAGAAATAA+GGG + chr8_3:20580302-20580321 Msa1281190:intron 25.0%
! ATTTAAAAACCATGACTCAT+AGG - chr8_3:20580598-20580617 None:intergenic 25.0%
!! AATATGAACTAGTTTATGAG+AGG + chr8_3:20580689-20580708 Msa1281190:intron 25.0%
! AACTTACAACTTAACAACTT+CGG - chr8_3:20581184-20581203 None:intergenic 25.0%
! CAACTTCATAATCAAATTCA+TGG - chr8_3:20581470-20581489 None:intergenic 25.0%
!! TTTTATGAGACTTTATGTTG+AGG + chr8_3:20581972-20581991 Msa1281190:intron 25.0%
! TTAAATAATCTTTGGCACAA+GGG - chr8_3:20581998-20582017 None:intergenic 25.0%
! ATAAATATTCAAACTCGCAA+CGG - chr8_3:20582036-20582055 None:intergenic 25.0%
! CAGAGTTTATCAACTTAAAA+CGG - chr8_3:20582129-20582148 None:intergenic 25.0%
!! AAATTTTTATGTCGGGAAAA+CGG + chr8_3:20582161-20582180 Msa1281190:intron 25.0%
!!! TGGTGGTTTTTTTTTGTAAT+GGG - chr8_3:20582238-20582257 None:intergenic 25.0%
!!! TTGGTGGTTTTTTTTTGTAA+TGG - chr8_3:20582239-20582258 None:intergenic 25.0%
! TTGAAATTGAAAATGGAGAA+TGG - chr8_3:20582434-20582453 None:intergenic 25.0%
!! TGATTTTCTTGAGAAAATGA+AGG - chr8_3:20582523-20582542 None:intergenic 25.0%
! TTGATTTCAATGTGTTTGTT+TGG + chr8_3:20582870-20582889 Msa1281190:intron 25.0%
! TGTTTGGTTGAATAAAATAG+AGG + chr8_3:20582886-20582905 Msa1281190:intron 25.0%
! AAAAAATAAGCCAATCCAAA+CGG - chr8_3:20582957-20582976 None:intergenic 25.0%
! TTTATAAGTTTGTCATGTGA+AGG + chr8_3:20583024-20583043 Msa1281190:intron 25.0%
! CAAAAATAAGTCAATCCAAA+CGG + chr8_3:20583150-20583169 Msa1281190:intron 25.0%
! AAAAATAAGTCAATCCAAAC+GGG + chr8_3:20583151-20583170 Msa1281190:intron 25.0%
! TTGAAAATGTGTTCATTAGT+AGG - chr8_3:20583258-20583277 None:intergenic 25.0%
! ATCTAAATTGGTATCAAACT+CGG - chr8_3:20583398-20583417 None:intergenic 25.0%
! CAAACTTAAACCTAGAAAAT+CGG + chr8_3:20583430-20583449 Msa1281190:intron 25.0%
! AAACTTAAACCTAGAAAATC+GGG + chr8_3:20583431-20583450 Msa1281190:intron 25.0%
! GCATTATGTTATCAATAAGT+TGG + chr8_3:20583528-20583547 Msa1281190:intron 25.0%
! TTGAAATGAATGTTTGTGTT+TGG + chr8_3:20583683-20583702 Msa1281190:intron 25.0%
! TGAAATGAATGTTTGTGTTT+GGG + chr8_3:20583684-20583703 Msa1281190:intron 25.0%
!!! TTTTGAGTACTAATACGTAA+TGG + chr8_3:20583952-20583971 Msa1281190:intron 25.0%
! ACTTAATAATTCCTAGTTCA+TGG + chr8_3:20584044-20584063 Msa1281190:intron 25.0%
! TATGTTAGAATTAACATCGA+GGG - chr8_3:20584347-20584366 None:intergenic 25.0%
! ATATGTTAGAATTAACATCG+AGG - chr8_3:20584348-20584367 None:intergenic 25.0%
! TAGAAGGAAACAAGAAAAAA+GGG - chr8_3:20584567-20584586 None:intergenic 25.0%
! TTAGAAGGAAACAAGAAAAA+AGG - chr8_3:20584568-20584587 None:intergenic 25.0%
!!! ATATCCAAGACTATTTTTCT+AGG - chr8_3:20584701-20584720 None:intergenic 25.0%
! TTTCTCAATATTCAAAACTG+AGG - chr8_3:20584776-20584795 None:intergenic 25.0%
! GATAGAATAACGACTAAAAA+GGG - chr8_3:20584899-20584918 None:intergenic 25.0%
! TGATAGAATAACGACTAAAA+AGG - chr8_3:20584900-20584919 None:intergenic 25.0%
!! TTGATTTACTGTTGATTGAT+TGG - chr8_3:20584977-20584996 None:intergenic 25.0%
! AAATAGGATCCATCAAAATA+TGG - chr8_3:20585265-20585284 None:intergenic 25.0%
! CTTTCAATATCTGAAAAACT+AGG - chr8_3:20585315-20585334 None:intergenic 25.0%
!!! TCTCCTTTTTTTTTATGGTA+AGG + chr8_3:20585400-20585419 Msa1281190:intron 25.0%
! CTTCCTTACCATAAAAAAAA+AGG - chr8_3:20585406-20585425 None:intergenic 25.0%
! ATAATTTATCAGGAAAGACT+TGG + chr8_3:20585560-20585579 Msa1281190:intron 25.0%
!! TGGTTTTTGATAGAATGTTA+TGG + chr8_3:20585607-20585626 Msa1281190:intron 25.0%
!! TGCTTTTATTAACTAGTAGT+AGG + chr8_3:20585895-20585914 Msa1281190:intron 25.0%
!!! TAGTTTAGTTGTTTTTGATG+CGG + chr8_3:20586070-20586089 Msa1281190:intron 25.0%
! ATATTATTTCGACATTCTTG+AGG - chr8_3:20586193-20586212 None:intergenic 25.0%
! ATAAGTCGAATTCATTTGTA+TGG - chr8_3:20586302-20586321 None:intergenic 25.0%
! GACAAAAGATCAAATGAATT+TGG - chr8_3:20586442-20586461 None:intergenic 25.0%
! AAACCACTTGAACTTTTTGT+TGG - chr8_3:20579407-20579426 None:intergenic 30.0%
AAACAATGAGACAAAACTAG+GGG - chr8_3:20579632-20579651 None:intergenic 30.0%
GAAAACAATGAGACAAAACT+AGG - chr8_3:20579634-20579653 None:intergenic 30.0%
! TTGTTTTCCATTCTTTATGG+TGG + chr8_3:20579646-20579665 Msa1281190:five_prime_UTR 30.0%
! ATAAAGGAAAAGTGAGTTGA+TGG - chr8_3:20579703-20579722 None:intergenic 30.0%
ATCTTTCTTCCTTTAAGTCA+TGG + chr8_3:20579727-20579746 Msa1281190:five_prime_UTR 30.0%
AAACAAGTTCCATGACTTAA+AGG - chr8_3:20579739-20579758 None:intergenic 30.0%
GGAAATTAGGGAGTAAAATA+GGG - chr8_3:20579851-20579870 None:intergenic 30.0%
AGGAAATTAGGGAGTAAAAT+AGG - chr8_3:20579852-20579871 None:intergenic 30.0%
GAATTTAACAGTACATGTTG+AGG - chr8_3:20579892-20579911 None:intergenic 30.0%
CAATTAGCAGGCAATTATAT+AGG - chr8_3:20579914-20579933 None:intergenic 30.0%
AATGCTAGAGATTAAACTTG+TGG - chr8_3:20580099-20580118 None:intergenic 30.0%
ATAAGGGTTGTATGAACATA+TGG + chr8_3:20580318-20580337 Msa1281190:intron 30.0%
TAAGGGTTGTATGAACATAT+GGG + chr8_3:20580319-20580338 Msa1281190:intron 30.0%
AAACACTAAAAACGAGTTCA+AGG - chr8_3:20580520-20580539 None:intergenic 30.0%
GATAGCGACATGATTAATAT+AGG - chr8_3:20580715-20580734 None:intergenic 30.0%
CAACTTATATGAGTATGCAA+TGG - chr8_3:20581239-20581258 None:intergenic 30.0%
CATTGCATACTCATATAAGT+TGG + chr8_3:20581237-20581256 Msa1281190:intron 30.0%
!! CATACTCATATAAGTTGGTT+GGG + chr8_3:20581242-20581261 Msa1281190:intron 30.0%
ATAAACTACACTTAACAACG+TGG - chr8_3:20581723-20581742 None:intergenic 30.0%
CTTAAATAATCTTTGGCACA+AGG - chr8_3:20581999-20582018 None:intergenic 30.0%
! AATTTTTATGTCGGGAAAAC+GGG + chr8_3:20582162-20582181 Msa1281190:intron 30.0%
!!! GGTGGTTTTTTTTTGTAATG+GGG - chr8_3:20582237-20582256 None:intergenic 30.0%
!! AAGATTGATGGTGAAGATTA+GGG - chr8_3:20582374-20582393 None:intergenic 30.0%
AGGGGGAAAATTGAAAATTT+GGG - chr8_3:20582480-20582499 None:intergenic 30.0%
AAGGGGGAAAATTGAAAATT+TGG - chr8_3:20582481-20582500 None:intergenic 30.0%
TGAAGGAAAATGGAATGAAA+GGG - chr8_3:20582506-20582525 None:intergenic 30.0%
ATGAAGGAAAATGGAATGAA+AGG - chr8_3:20582507-20582526 None:intergenic 30.0%
CTTGAGAAAATGAAGGAAAA+TGG - chr8_3:20582516-20582535 None:intergenic 30.0%
!! TACCAATTTAGATTTTGGGT+TGG + chr8_3:20583405-20583424 Msa1281190:intron 30.0%
!! CGATTTTCTAGGTTTAAGTT+TGG - chr8_3:20583432-20583451 None:intergenic 30.0%
TCTTATCTAATGTAAGACTC+TGG + chr8_3:20583505-20583524 Msa1281190:intron 30.0%
CTTATCTAATGTAAGACTCT+GGG + chr8_3:20583506-20583525 Msa1281190:intron 30.0%
!! TGCAATTGTTTCTAATTGCT+TGG + chr8_3:20583800-20583819 Msa1281190:intron 30.0%
TAGATACTAAGACCTTGATT+AGG + chr8_3:20583860-20583879 Msa1281190:intron 30.0%
AGATACTAAGACCTTGATTA+GGG + chr8_3:20583861-20583880 Msa1281190:intron 30.0%
TAATAATTCCTAGTTCATGG+TGG + chr8_3:20584047-20584066 Msa1281190:intron 30.0%
GACCTATAGATTCTGTAATA+AGG + chr8_3:20584106-20584125 Msa1281190:intron 30.0%
CTCCTTATTACAGAATCTAT+AGG - chr8_3:20584111-20584130 None:intergenic 30.0%
AATAAGGAGAGTAGATCAAA+TGG + chr8_3:20584122-20584141 Msa1281190:intron 30.0%
AAATCTAGAGAGTAATGAGT+TGG + chr8_3:20584197-20584216 Msa1281190:intron 30.0%
TTCTAACATATCTGCTTCAA+AGG + chr8_3:20584357-20584376 Msa1281190:intron 30.0%
TCTAACATATCTGCTTCAAA+GGG + chr8_3:20584358-20584377 Msa1281190:intron 30.0%
! TCGTCATTATATTTTCTTGG+AGG + chr8_3:20584438-20584457 Msa1281190:intron 30.0%
TTATCAAGCAGACAATTAGA+AGG - chr8_3:20584583-20584602 None:intergenic 30.0%
CTAATTGTCTGCTTGATAAA+TGG + chr8_3:20584584-20584603 Msa1281190:intron 30.0%
!! AAGACTATTTTTCTAGGTTC+AGG - chr8_3:20584695-20584714 None:intergenic 30.0%
TGAACCTAGAAAAATAGTCT+TGG + chr8_3:20584694-20584713 Msa1281190:intron 30.0%
! GAAAAATAGTCTTGGATATC+TGG + chr8_3:20584702-20584721 Msa1281190:intron 30.0%
TGTGTGATAAGAGTAAAACA+TGG - chr8_3:20584799-20584818 None:intergenic 30.0%
ATTGAAGTATATCTCTGCAT+GGG + chr8_3:20585056-20585075 Msa1281190:intron 30.0%
!! TTCTAAAAACAAAGTACCGA+CGG - chr8_3:20585217-20585236 None:intergenic 30.0%
TATCTGAAAAACTAGGAGTA+TGG - chr8_3:20585308-20585327 None:intergenic 30.0%
GAAATTAAGCTTTCCTCAAA+GGG - chr8_3:20585382-20585401 None:intergenic 30.0%
AGAAATTAAGCTTTCCTCAA+AGG - chr8_3:20585383-20585402 None:intergenic 30.0%
!!! ACGATTGAGTTTTAATTCAG+AGG + chr8_3:20585708-20585727 Msa1281190:intron 30.0%
CTATATAGGTATTTCCCATT+CGG - chr8_3:20585815-20585834 None:intergenic 30.0%
AAAAGCAATTAGGTACAGTT+CGG - chr8_3:20585882-20585901 None:intergenic 30.0%
TTATTAACTAGTAGTAGGAC+AGG + chr8_3:20585900-20585919 Msa1281190:intron 30.0%
CTAACAAGTATGTTCAATCT+GGG - chr8_3:20586033-20586052 None:intergenic 30.0%
ACTAACAAGTATGTTCAATC+TGG - chr8_3:20586034-20586053 None:intergenic 30.0%
!!! AGTTTAGTTGTTTTTGATGC+GGG + chr8_3:20586071-20586090 Msa1281190:intron 30.0%
TTCAGACAAACAATGATAGA+AGG - chr8_3:20586142-20586161 None:intergenic 30.0%
AATAATATCACAGGGCAATT+TGG + chr8_3:20586394-20586413 Msa1281190:three_prime_UTR 30.0%
ATCAAATGAATTTGGGAAAC+AGG - chr8_3:20586434-20586453 None:intergenic 30.0%
! ATCTTTACCATTGACTATGT+TGG + chr8_3:20586477-20586496 Msa1281190:three_prime_UTR 30.0%
TCAGTTAGCAAAAACTAACA+AGG - chr8_3:20586690-20586709 None:intergenic 30.0%
GATCCAACAAAAAGTTCAAG+TGG + chr8_3:20579401-20579420 Msa1281190:five_prime_UTR 35.0%
!! ACAGTTTAAGTGGTTTGGTT+CGG + chr8_3:20579446-20579465 Msa1281190:five_prime_UTR 35.0%
CGTGAACCATTATAATGGTT+CGG + chr8_3:20579542-20579561 Msa1281190:five_prime_UTR 35.0%
!!! TGGTTCGGTTATTTTTGGTT+CGG + chr8_3:20579557-20579576 Msa1281190:five_prime_UTR 35.0%
! TTCCATTCTTTATGGTGGAA+CGG + chr8_3:20579651-20579670 Msa1281190:five_prime_UTR 35.0%
TTGAGGAAAAGAGGAACATA+GGG - chr8_3:20579875-20579894 None:intergenic 35.0%
ACGTACAATTCTTTCTCTCT+TGG - chr8_3:20580147-20580166 None:intergenic 35.0%
TACGTCTGTAGCATCAAATT+TGG + chr8_3:20580162-20580181 Msa1281190:five_prime_UTR 35.0%
ACGTCTGTAGCATCAAATTT+GGG + chr8_3:20580163-20580182 Msa1281190:five_prime_UTR 35.0%
TAGCATCAAATTTGGGAAGT+GGG + chr8_3:20580170-20580189 Msa1281190:five_prime_UTR 35.0%
GATTGCATCTAACATCCTTT+AGG + chr8_3:20580272-20580291 Msa1281190:intron 35.0%
ATCTCACAAACTCATCCTAA+AGG - chr8_3:20580290-20580309 None:intergenic 35.0%
TATGAACATATGGGTAGTGA+AGG + chr8_3:20580328-20580347 Msa1281190:intron 35.0%
ATGAACATATGGGTAGTGAA+GGG + chr8_3:20580329-20580348 Msa1281190:intron 35.0%
ATGTTGATGTGTTAAATCCG+TGG + chr8_3:20580447-20580466 Msa1281190:intron 35.0%
GAACAATGGGTATGTACAAT+CGG - chr8_3:20580563-20580582 None:intergenic 35.0%
AAAAACCATGACTCATAGGA+GGG - chr8_3:20580594-20580613 None:intergenic 35.0%
TAAAAACCATGACTCATAGG+AGG - chr8_3:20580595-20580614 None:intergenic 35.0%
!! TCCTTTTAATTGAGACTCGT+TGG + chr8_3:20580742-20580761 Msa1281190:intron 35.0%
!! GCATACTCATATAAGTTGGT+TGG + chr8_3:20581241-20581260 Msa1281190:intron 35.0%
TCTTGATATGCAAATGCATG+TGG - chr8_3:20581290-20581309 None:intergenic 35.0%
! TAAGATGTCGAGTTGTTAAG+AGG + chr8_3:20581369-20581388 Msa1281190:intron 35.0%
!! AGCAACATTTTCAAGCAAAG+GGG - chr8_3:20581783-20581802 None:intergenic 35.0%
!! GAGCAACATTTTCAAGCAAA+GGG - chr8_3:20581784-20581803 None:intergenic 35.0%
!! AGAGCAACATTTTCAAGCAA+AGG - chr8_3:20581785-20581804 None:intergenic 35.0%
TGAAAATGTTGCTCTTCGTA+TGG + chr8_3:20581790-20581809 Msa1281190:intron 35.0%
GAAAATGTTGCTCTTCGTAT+GGG + chr8_3:20581791-20581810 Msa1281190:intron 35.0%
! ATTTTTATGTCGGGAAAACG+GGG + chr8_3:20582163-20582182 Msa1281190:intron 35.0%
!! GAAGATTGATGGTGAAGATT+AGG - chr8_3:20582375-20582394 None:intergenic 35.0%
ACTTGAATTGAATTGCAGTG+TGG - chr8_3:20582407-20582426 None:intergenic 35.0%
AAATGGAATGAAAGGGGAAA+GGG - chr8_3:20582499-20582518 None:intergenic 35.0%
AAAATGGAATGAAAGGGGAA+AGG - chr8_3:20582500-20582519 None:intergenic 35.0%
GAAGGAAAATGGAATGAAAG+GGG - chr8_3:20582505-20582524 None:intergenic 35.0%
!!! TTTCGTGTTTTTTCAGGTGA+AGG + chr8_3:20582574-20582593 Msa1281190:intron 35.0%
CATTGGGTTAAGATGTCATT+CGG + chr8_3:20582680-20582699 Msa1281190:CDS 35.0%
AAGATGTCATTCGGAGAATT+TGG + chr8_3:20582689-20582708 Msa1281190:CDS 35.0%
AAAAAGAAACTCACAGTCCA+AGG - chr8_3:20582791-20582810 None:intergenic 35.0%
AAAATAGAGGTGACTAGAGT+AGG + chr8_3:20582899-20582918 Msa1281190:intron 35.0%
CTGACTTAACCCTATAAAAC+CGG + chr8_3:20583212-20583231 Msa1281190:intron 35.0%
ATACTCTAGATGACCAATTC+TGG - chr8_3:20583324-20583343 None:intergenic 35.0%
! CATCTAGAGTATAACATGAG+TGG + chr8_3:20583332-20583351 Msa1281190:intron 35.0%
GTCCAACCCAAAATCTAAAT+TGG - chr8_3:20583410-20583429 None:intergenic 35.0%
! TGTTATCAATAAGTTGGGGT+AGG + chr8_3:20583534-20583553 Msa1281190:intron 35.0%
!! AATTTTGACACCATTCAGCT+AGG - chr8_3:20583779-20583798 None:intergenic 35.0%
!! CAAAGGGTACTTAGTACATA+TGG + chr8_3:20584374-20584393 Msa1281190:intron 35.0%
AGTACATATGGAAGCAAAAG+TGG + chr8_3:20584386-20584405 Msa1281190:intron 35.0%
TCTAGGTTCAGGTATAAACA+CGG - chr8_3:20584684-20584703 None:intergenic 35.0%
CATTGAAGTATATCTCTGCA+TGG + chr8_3:20585055-20585074 Msa1281190:intron 35.0%
GTTGAAGTCAGCAATAAACA+GGG - chr8_3:20585151-20585170 None:intergenic 35.0%
CTTATTAGGATCCATGCATT+TGG - chr8_3:20585183-20585202 None:intergenic 35.0%
CGGTTTAGTGATGACTTATT+AGG - chr8_3:20585197-20585216 None:intergenic 35.0%
ATAAGTCATCACTAAACCGT+CGG + chr8_3:20585198-20585217 Msa1281190:intron 35.0%
! GATGGATCCTATTTTATCAC+TGG + chr8_3:20585271-20585290 Msa1281190:intron 35.0%
! AAAAACTAGGAGTATGGTAG+TGG - chr8_3:20585302-20585321 None:intergenic 35.0%
! TAATGAGTTGGACCGTAATA+TGG + chr8_3:20585587-20585606 Msa1281190:intron 35.0%
! TTATCCCATTTAAAGTGGGT+TGG - chr8_3:20585652-20585671 None:intergenic 35.0%
AACCCACTTTAAATGGGATA+AGG + chr8_3:20585651-20585670 Msa1281190:intron 35.0%
! AGCCTTATCCCATTTAAAGT+GGG - chr8_3:20585656-20585675 None:intergenic 35.0%
! AAGCCTTATCCCATTTAAAG+TGG - chr8_3:20585657-20585676 None:intergenic 35.0%
ACTTTAAATGGGATAAGGCT+TGG + chr8_3:20585656-20585675 Msa1281190:intron 35.0%
AGGAAAACTAAACCAAGGTT+CGG + chr8_3:20585766-20585785 Msa1281190:intron 35.0%
CGGTTCATAAAGAATCAACT+CGG - chr8_3:20585862-20585881 None:intergenic 35.0%
TTAACAGTCTGACTCTGATA+CGG - chr8_3:20585989-20586008 None:intergenic 35.0%
!!! ATGCTTGTTTTGTAGTCTCA+AGG + chr8_3:20586221-20586240 Msa1281190:intron 35.0%
TAGACTACCAACATAGTCAA+TGG - chr8_3:20586487-20586506 None:intergenic 35.0%
!!! CTGAGAAGAAGTTTTGAAGT+TGG + chr8_3:20586565-20586584 Msa1281190:three_prime_UTR 35.0%
AGGTCATAATCGTTGTAGTT+TGG - chr8_3:20586670-20586689 None:intergenic 35.0%
TCATGTGTTTGTTCACTTTG+TGG + chr8_3:20586772-20586791 Msa1281190:three_prime_UTR 35.0%
! TGCTCTAAACTAAGACTGTT+TGG + chr8_3:20586817-20586836 Msa1281190:three_prime_UTR 35.0%
CGGTTCGTGAACCATTATAA+TGG + chr8_3:20579537-20579556 Msa1281190:five_prime_UTR 40.0%
!!! CGGTTATTTTTGGTTCGGTT+CGG + chr8_3:20579562-20579581 Msa1281190:five_prime_UTR 40.0%
!!! ATTTTTGGTTCGGTTCGGTT+CGG + chr8_3:20579567-20579586 Msa1281190:five_prime_UTR 40.0%
AATGAGACAAAACTAGGGGT+GGG - chr8_3:20579628-20579647 None:intergenic 40.0%
! TCCATTCTTTATGGTGGAAC+GGG + chr8_3:20579652-20579671 Msa1281190:five_prime_UTR 40.0%
GAGTATACACGTGAATGAGT+GGG - chr8_3:20579812-20579831 None:intergenic 40.0%
AGAGTATACACGTGAATGAG+TGG - chr8_3:20579813-20579832 None:intergenic 40.0%
GGAACATAGGGAGGAAATTA+GGG - chr8_3:20579863-20579882 None:intergenic 40.0%
AGGAACATAGGGAGGAAATT+AGG - chr8_3:20579864-20579883 None:intergenic 40.0%
GTTGAGGAAAAGAGGAACAT+AGG - chr8_3:20579876-20579895 None:intergenic 40.0%
CAGTACATGTTGAGGAAAAG+AGG - chr8_3:20579884-20579903 None:intergenic 40.0%
TATTCTCTCTTCTCCCCTTA+CGG - chr8_3:20579939-20579958 None:intergenic 40.0%
TATTCACACGCCAATTCCAA+AGG + chr8_3:20580073-20580092 Msa1281190:intron 40.0%
!! AAACTTGTGGCCTTTGGAAT+TGG - chr8_3:20580086-20580105 None:intergenic 40.0%
GAGATTAAACTTGTGGCCTT+TGG - chr8_3:20580092-20580111 None:intergenic 40.0%
GTAGCATCAAATTTGGGAAG+TGG + chr8_3:20580169-20580188 Msa1281190:five_prime_UTR 40.0%
!!! TTTGCTGGGAAAGCATTTTG+AGG + chr8_3:20580203-20580222 Msa1281190:five_prime_UTR 40.0%
!!! TGGGAAAGCATTTTGAGGTA+AGG + chr8_3:20580208-20580227 Msa1281190:intron 40.0%
!!! GGGAAAGCATTTTGAGGTAA+GGG + chr8_3:20580209-20580228 Msa1281190:intron 40.0%
! GAGGGTATATGTCGAACAAT+GGG - chr8_3:20580576-20580595 None:intergenic 40.0%
ATATACCCTCCTATGAGTCA+TGG + chr8_3:20580586-20580605 Msa1281190:intron 40.0%
GCCAACGAGTCTCAATTAAA+AGG - chr8_3:20580746-20580765 None:intergenic 40.0%
! TGACTACTTGCTACACATTC+AGG + chr8_3:20582194-20582213 Msa1281190:intron 40.0%
! GACTACTTGCTACACATTCA+GGG + chr8_3:20582195-20582214 Msa1281190:intron 40.0%
ATTGAATTGCAGTGTGGTGT+GGG - chr8_3:20582401-20582420 None:intergenic 40.0%
AATTGAATTGCAGTGTGGTG+TGG - chr8_3:20582402-20582421 None:intergenic 40.0%
AATGGAATGAAAGGGGAAAG+GGG - chr8_3:20582498-20582517 None:intergenic 40.0%
!!! TCGGTGTTTCGTGTTTTTTC+AGG + chr8_3:20582568-20582587 Msa1281190:intron 40.0%
AATACAGCAGATGTTGGGAT+CGG - chr8_3:20582642-20582661 None:intergenic 40.0%
CCATCAATACAGCAGATGTT+GGG - chr8_3:20582647-20582666 None:intergenic 40.0%
!! TCCTGAAAAGTGCCTTGATA+AGG + chr8_3:20582743-20582762 Msa1281190:CDS 40.0%
!! CCTGAAAAGTGCCTTGATAA+GGG + chr8_3:20582744-20582763 Msa1281190:CDS 40.0%
TAACATCACGTCCCTTATCA+AGG - chr8_3:20582758-20582777 None:intergenic 40.0%
!!! CTAGTTTTATTGGGTCCGTT+TGG + chr8_3:20582939-20582958 Msa1281190:intron 40.0%
TTTATTGGGTCCGTTTGGAT+TGG + chr8_3:20582944-20582963 Msa1281190:intron 40.0%
ACATAAATTAAGGGCCCGTT+TGG - chr8_3:20583168-20583187 None:intergenic 40.0%
!! CCTTACAAGCCGGTTTTATA+GGG - chr8_3:20583224-20583243 None:intergenic 40.0%
!! ACCTTACAAGCCGGTTTTAT+AGG - chr8_3:20583225-20583244 None:intergenic 40.0%
!! TATAAAACCGGCTTGTAAGG+TGG + chr8_3:20583224-20583243 Msa1281190:intron 40.0%
ATATTTGCCACCTTACAAGC+CGG - chr8_3:20583234-20583253 None:intergenic 40.0%
GAGTCTCATTGGATGAGATA+TGG - chr8_3:20583281-20583300 None:intergenic 40.0%
GGAGTCTATCCAAGATCTAT+CGG - chr8_3:20583377-20583396 None:intergenic 40.0%
TCGGCTGACAAATACAGAAA+TGG - chr8_3:20583628-20583647 None:intergenic 40.0%
TTGAATGCCTAACTCAGCTA+AGG - chr8_3:20583711-20583730 None:intergenic 40.0%
CAGCTAGGTTCAAGAGAAAA+AGG - chr8_3:20583764-20583783 None:intergenic 40.0%
TTCTCTTGAACCTAGCTGAA+TGG + chr8_3:20583766-20583785 Msa1281190:intron 40.0%
!! TTTTCGAGCATCCCTAATCA+AGG - chr8_3:20583875-20583894 None:intergenic 40.0%
AAACTCGGCTTAGATGGTTT+GGG + chr8_3:20584070-20584089 Msa1281190:intron 40.0%
! TTAGATGGTTTGGGCATGTA+GGG + chr8_3:20584079-20584098 Msa1281190:intron 40.0%
AAGGAGAGTAGATCAAATGG+AGG + chr8_3:20584125-20584144 Msa1281190:intron 40.0%
AGGAGAGTAGATCAAATGGA+GGG + chr8_3:20584126-20584145 Msa1281190:intron 40.0%
AGTCAAATCACGAGAGAAAG+AGG + chr8_3:20584150-20584169 Msa1281190:intron 40.0%
!! TAGAGAGTAATGAGTTGGTG+AGG + chr8_3:20584202-20584221 Msa1281190:intron 40.0%
!! AGAGAGTAATGAGTTGGTGA+GGG + chr8_3:20584203-20584222 Msa1281190:intron 40.0%
TCAGCAATAAACAGGGATGA+CGG - chr8_3:20585144-20585163 None:intergenic 40.0%
GGTTGAAGTCAGCAATAAAC+AGG - chr8_3:20585152-20585171 None:intergenic 40.0%
ACCTCTTATCACCAAATGCA+TGG + chr8_3:20585169-20585188 Msa1281190:intron 40.0%
! TCCATGCATTTGGTGATAAG+AGG - chr8_3:20585173-20585192 None:intergenic 40.0%
GGTGTGACCAGTGATAAAAT+AGG - chr8_3:20585281-20585300 None:intergenic 40.0%
ACTGTTAGATACGTTAGCTC+TGG + chr8_3:20585440-20585459 Msa1281190:intron 40.0%
AGACTTGGAGACTAATGAGT+TGG + chr8_3:20585575-20585594 Msa1281190:intron 40.0%
TGTAGCCAACCCACTTTAAA+TGG + chr8_3:20585644-20585663 Msa1281190:intron 40.0%
GTAGCCAACCCACTTTAAAT+GGG + chr8_3:20585645-20585664 Msa1281190:intron 40.0%
AATTCAGAGGACTGCTTAGT+AGG + chr8_3:20585721-20585740 Msa1281190:intron 40.0%
CAGGAAGGAAAACTAAACCA+AGG + chr8_3:20585761-20585780 Msa1281190:intron 40.0%
! TTCTGTGTTTCTGAACCGAA+TGG + chr8_3:20585797-20585816 Msa1281190:intron 40.0%
! TCTGTGTTTCTGAACCGAAT+GGG + chr8_3:20585798-20585817 Msa1281190:intron 40.0%
! TCTGACTCTGATACGGTTTT+TGG - chr8_3:20585982-20586001 None:intergenic 40.0%
GGAACTATCTGTCACAGTTT+GGG - chr8_3:20586012-20586031 None:intergenic 40.0%
! TCTACACCAAAAGTGCACAA+AGG + chr8_3:20586245-20586264 Msa1281190:CDS 40.0%
AAGGAGATGGATGATTACGT+CGG + chr8_3:20586264-20586283 Msa1281190:CDS 40.0%
!! GTTGGTAGTCTAAATGCTTC+TGG + chr8_3:20586495-20586514 Msa1281190:three_prime_UTR 40.0%
TCTGCGATAACATCTTGTGT+TGG + chr8_3:20586732-20586751 Msa1281190:three_prime_UTR 40.0%
TGTGTTTGTTCACTTTGTGG+AGG + chr8_3:20586775-20586794 Msa1281190:three_prime_UTR 40.0%
!! GTGGTTTGGTTCGGTTCAAA+CGG + chr8_3:20579455-20579474 Msa1281190:five_prime_UTR 45.0%
!! TTGGTTCGGTTCAAACGGTT+CGG + chr8_3:20579460-20579479 Msa1281190:five_prime_UTR 45.0%
!! GGTTCAAGATGGTTCGGTTA+TGG + chr8_3:20579486-20579505 Msa1281190:five_prime_UTR 45.0%
CAATGAGACAAAACTAGGGG+TGG - chr8_3:20579629-20579648 None:intergenic 45.0%
TCCCGTTCCACCATAAAGAA+TGG - chr8_3:20579656-20579675 None:intergenic 45.0%
GATGGAGAACATTTAGCAGC+TGG - chr8_3:20579685-20579704 None:intergenic 45.0%
ATACACGTGAATGAGTGGGA+GGG - chr8_3:20579808-20579827 None:intergenic 45.0%
TATACACGTGAATGAGTGGG+AGG - chr8_3:20579809-20579828 None:intergenic 45.0%
AGGAAAAGAGGAACATAGGG+AGG - chr8_3:20579872-20579891 None:intergenic 45.0%
! TGGGTCTTGAGAGATTTGCT+GGG + chr8_3:20580189-20580208 Msa1281190:five_prime_UTR 45.0%
! GGAGGGTATATGTCGAACAA+TGG - chr8_3:20580577-20580596 None:intergenic 45.0%
! AGTCGAGTCGAGTTGTTAAG+AGG + chr8_3:20581345-20581364 Msa1281190:intron 45.0%
! TCTTCGTATGGGTAACTTGC+AGG + chr8_3:20581802-20581821 Msa1281190:intron 45.0%
! CAGGTAACCAAGATTAGTCG+CGG + chr8_3:20581821-20581840 Msa1281190:intron 45.0%
ACTCCTCACAAGTGTGTCTT+AGG + chr8_3:20581854-20581873 Msa1281190:five_prime_UTR 45.0%
GTGTCTTAGGTGCTCTGATA+CGG + chr8_3:20581867-20581886 Msa1281190:intron 45.0%
TAGGTGCTCTGATACGGAAA+CGG + chr8_3:20581873-20581892 Msa1281190:intron 45.0%
TTCAGGGACCAAAGTGACTA+CGG + chr8_3:20582211-20582230 Msa1281190:intron 45.0%
ATGGAATGAAAGGGGAAAGG+GGG - chr8_3:20582497-20582516 None:intergenic 45.0%
ATACAGCAGATGTTGGGATC+GGG - chr8_3:20582641-20582660 None:intergenic 45.0%
CCCAACATCTGCTGTATTGA+TGG + chr8_3:20582644-20582663 Msa1281190:CDS 45.0%
GCCATCAATACAGCAGATGT+TGG - chr8_3:20582648-20582667 None:intergenic 45.0%
ATGGCATCTTCGAAGCACAT+TGG + chr8_3:20582663-20582682 Msa1281190:CDS 45.0%
TGGCATCTTCGAAGCACATT+GGG + chr8_3:20582664-20582683 Msa1281190:CDS 45.0%
!! CCCTTATCAAGGCACTTTTC+AGG - chr8_3:20582747-20582766 None:intergenic 45.0%
!! CCCTATAAAACCGGCTTGTA+AGG + chr8_3:20583221-20583240 Msa1281190:intron 45.0%
!! GTGAGTGTTGAGAGTCTCAT+TGG - chr8_3:20583292-20583311 None:intergenic 45.0%
ATGAGTGGCTCAGTAGTAGT+AGG + chr8_3:20583347-20583366 Msa1281190:intron 45.0%
GTAGGTGATCCGATAGATCT+TGG + chr8_3:20583365-20583384 Msa1281190:intron 45.0%
! CCTTACAAGCCCGATTTTCT+AGG - chr8_3:20583443-20583462 None:intergenic 45.0%
CCTAGAAAATCGGGCTTGTA+AGG + chr8_3:20583440-20583459 Msa1281190:intron 45.0%
! TTTGGGACCTTAGCTGAGTT+AGG + chr8_3:20583701-20583720 Msa1281190:intron 45.0%
ACGGCATGTTCTATTGTTGC+TGG + chr8_3:20583909-20583928 Msa1281190:intron 45.0%
! CCTAGTTCATGGTGGAAACT+CGG + chr8_3:20584055-20584074 Msa1281190:intron 45.0%
GAAACTCGGCTTAGATGGTT+TGG + chr8_3:20584069-20584088 Msa1281190:intron 45.0%
! CTTAGATGGTTTGGGCATGT+AGG + chr8_3:20584078-20584097 Msa1281190:intron 45.0%
TAAGCTTTCCTCAAAGGGCA+AGG - chr8_3:20585377-20585396 None:intergenic 45.0%
ACTGCTTAGTAGGCTGTTCA+TGG + chr8_3:20585731-20585750 Msa1281190:intron 45.0%
GGGAACTATCTGTCACAGTT+TGG - chr8_3:20586013-20586032 None:intergenic 45.0%
GGCGATACATACTTGTCAGT+AGG - chr8_3:20586121-20586140 None:intergenic 45.0%
! CCATCTCCTTTGTGCACTTT+TGG - chr8_3:20586254-20586273 None:intergenic 45.0%
! CCAAAAGTGCACAAAGGAGA+TGG + chr8_3:20586251-20586270 Msa1281190:CDS 45.0%
CAAATGCTTCCTGCTCTTTG+CGG - chr8_3:20586326-20586345 None:intergenic 45.0%
CACTTTGTGGAGGAACAATG+TGG + chr8_3:20586785-20586804 Msa1281190:three_prime_UTR 45.0%
!! TCGGTTCAAACGGTTCGGTT+CGG + chr8_3:20579465-20579484 Msa1281190:five_prime_UTR 50.0%
!! CGGTTCGGTTCAAGATGGTT+CGG + chr8_3:20579480-20579499 Msa1281190:five_prime_UTR 50.0%
TGCCTGCTAATTGTGCCGTA+AGG + chr8_3:20579921-20579940 Msa1281190:five_prime_UTR 50.0%
GCCTGCTAATTGTGCCGTAA+GGG + chr8_3:20579922-20579941 Msa1281190:five_prime_UTR 50.0%
CCTGCTAATTGTGCCGTAAG+GGG + chr8_3:20579923-20579942 Msa1281190:five_prime_UTR 50.0%
GTGGGTCTTGAGAGATTTGC+TGG + chr8_3:20580188-20580207 Msa1281190:five_prime_UTR 50.0%
GCACCTAAGACACACTTGTG+AGG - chr8_3:20581860-20581879 None:intergenic 50.0%
AGGTGCTCTGATACGGAAAC+GGG + chr8_3:20581874-20581893 Msa1281190:intron 50.0%
CTCTGATACGGAAACGGGAT+GGG + chr8_3:20581879-20581898 Msa1281190:intron 50.0%
TAATGGGGCCGTAGTCACTT+TGG - chr8_3:20582222-20582241 None:intergenic 50.0%
GGTGTGGGAAGGAAGATTGA+TGG - chr8_3:20582386-20582405 None:intergenic 50.0%
AATTGCAGTGTGGTGTGGGA+AGG - chr8_3:20582397-20582416 None:intergenic 50.0%
GATGTTACTCGCTGTGTCCT+TGG + chr8_3:20582771-20582790 Msa1281190:CDS 50.0%
CTCTCAACACTCACTCCTCA+CGG + chr8_3:20583298-20583317 Msa1281190:intron 50.0%
CCGAGTTTCCACCATGAACT+AGG - chr8_3:20584058-20584077 None:intergenic 50.0%
TGGTGGAAACTCGGCTTAGA+TGG + chr8_3:20584064-20584083 Msa1281190:intron 50.0%
GGATGATTCCTTGCCCTTTG+AGG + chr8_3:20585366-20585385 Msa1281190:intron 50.0%
TAGTAGGCTGTTCATGGCTC+AGG + chr8_3:20585737-20585756 Msa1281190:intron 50.0%
!! TAAACCAAGGTTCGGTGCAC+TGG + chr8_3:20585774-20585793 Msa1281190:intron 50.0%
!! CGGTTCGGTTCGGTTCAAGA+TGG + chr8_3:20579475-20579494 Msa1281190:five_prime_UTR 55.0%
CCCCTTACGGCACAATTAGC+AGG - chr8_3:20579926-20579945 None:intergenic 55.0%
TGGTTGGGAGCTTGATGCTC+TGG + chr8_3:20581257-20581276 Msa1281190:intron 55.0%
! GGGAGCTTGATGCTCTGGAT+TGG + chr8_3:20581262-20581281 Msa1281190:intron 55.0%
CTCACGACCGCGACTAATCT+TGG - chr8_3:20581831-20581850 None:intergenic 55.0%
! AGATTAGTCGCGGTCGTGAG+TGG + chr8_3:20581831-20581850 Msa1281190:five_prime_UTR 55.0%
GCTCTGATACGGAAACGGGA+TGG + chr8_3:20581878-20581897 Msa1281190:intron 55.0%
! TCGAGTGCTGTAGATGCTGC+TGG + chr8_3:20582612-20582631 Msa1281190:CDS 55.0%
TCACTCCTCACGGCCAGAAT+TGG + chr8_3:20583308-20583327 Msa1281190:intron 55.0%
GATGACCAATTCTGGCCGTG+AGG - chr8_3:20583316-20583335 None:intergenic 55.0%
GTTCATGGCTCAGGTCAGGA+AGG + chr8_3:20585746-20585765 Msa1281190:intron 55.0%
AGAACCAGTGCACCGAACCT+TGG - chr8_3:20585781-20585800 None:intergenic 55.0%
CGACTTATGCCGCAAAGAGC+AGG + chr8_3:20586314-20586333 Msa1281190:CDS 55.0%
CGTGAATGAGTGGGAGGGAG+AGG - chr8_3:20579803-20579822 None:intergenic 60.0%
GGCTGTTCATGGCTCAGGTC+AGG + chr8_3:20585742-20585761 Msa1281190:intron 60.0%
!! TCGGTTCGGTTCGGTTCGCG+CGG + chr8_3:20579576-20579595 Msa1281190:five_prime_UTR 65.0%
!! TCGGTTCGGTTCGCGCGGTT+CGG + chr8_3:20579581-20579600 Msa1281190:five_prime_UTR 65.0%
!! TCGGTTCGCGCGGTTCGGTT+CGG + chr8_3:20579586-20579605 Msa1281190:five_prime_UTR 65.0%
!! GCGCGGTTCGGTTCGGTTCA+TGG + chr8_3:20579593-20579612 Msa1281190:five_prime_UTR 65.0%
Chromosome Type Strat End Strand Name
chr8_3 gene 20578989 20586865 20578989 ID=Msa1281190;Name=Msa1281190
chr8_3 mRNA 20578989 20586865 20578989 ID=Msa1281190-mRNA-1;Parent=Msa1281190;Name=Msa1281190-mRNA-1;_AED=0.14;_eAED=0.14;_QI=1025|1|1|1|0.2|0.16|6|497|106
chr8_3 exon 20578989 20579085 20578989 ID=Msa1281190-mRNA-1:exon:7507;Parent=Msa1281190-mRNA-1
chr8_3 exon 20579202 20579982 20579202 ID=Msa1281190-mRNA-1:exon:7508;Parent=Msa1281190-mRNA-1
chr8_3 exon 20580149 20580224 20580149 ID=Msa1281190-mRNA-1:exon:7509;Parent=Msa1281190-mRNA-1
chr8_3 exon 20581824 20581875 20581824 ID=Msa1281190-mRNA-1:exon:7510;Parent=Msa1281190-mRNA-1
chr8_3 exon 20582590 20582796 20582590 ID=Msa1281190-mRNA-1:exon:7511;Parent=Msa1281190-mRNA-1
chr8_3 exon 20586236 20586865 20586236 ID=Msa1281190-mRNA-1:exon:7512;Parent=Msa1281190-mRNA-1
chr8_3 five_prime_UTR 20578989 20579085 20578989 ID=Msa1281190-mRNA-1:five_prime_utr;Parent=Msa1281190-mRNA-1
chr8_3 five_prime_UTR 20579202 20579982 20579202 ID=Msa1281190-mRNA-1:five_prime_utr;Parent=Msa1281190-mRNA-1
chr8_3 five_prime_UTR 20580149 20580224 20580149 ID=Msa1281190-mRNA-1:five_prime_utr;Parent=Msa1281190-mRNA-1
chr8_3 five_prime_UTR 20581824 20581875 20581824 ID=Msa1281190-mRNA-1:five_prime_utr;Parent=Msa1281190-mRNA-1
chr8_3 five_prime_UTR 20582590 20582608 20582590 ID=Msa1281190-mRNA-1:five_prime_utr;Parent=Msa1281190-mRNA-1
chr8_3 CDS 20582609 20582796 20582609 ID=Msa1281190-mRNA-1:cds;Parent=Msa1281190-mRNA-1
chr8_3 CDS 20586236 20586368 20586236 ID=Msa1281190-mRNA-1:cds;Parent=Msa1281190-mRNA-1
chr8_3 three_prime_UTR 20586369 20586865 20586369 ID=Msa1281190-mRNA-1:three_prime_utr;Parent=Msa1281190-mRNA-1
Gene Sequence

>Msa1281190

ATGTCGAGTGCTGTAGATGCTGCTGGAAACCCGATCCCAACATCTGCTGTATTGATGGCATCTTCGAAGCACATTGGGTTAAGATGTCATTCGGAGAATTTGGAGTTTCTGAAATGTAAGAAGAAAGATCAGAATCCTGAAAAGTGCCTTGATAAGGGACGTGATGTTACTCGCTGTGTCCTTGGACTTCTCAAGGATCTACACCAAAAGTGCACAAAGGAGATGGATGATTACGTCGGTTGCATGTACTACCATACAAATGAATTCGACTTATGCCGCAAAGAGCAGGAAGCATTTGAGAAAAAATGTTCTTTGGAATGA
Protein sequence

>Msa1281190

MSSAVDAAGNPIPTSAVLMASSKHIGLRCHSENLEFLKCKKKDQNPEKCLDKGRDVTRCVLGLLKDLHQKCTKEMDDYVGCMYYHTNEFDLCRKEQEAFEKKCSLE*