AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0355270


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0355270 MtrunA17_Chr3g0091791 95.652 138 6 0 1 138 1 138 5.45e-94 268
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0355270 AT1G26550.1 87.603 121 15 0 18 138 16 136 1.12e-68 204

Find 67 sgRNAs with CRISPR-Local

Find 187 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAACATGAAAGGTTTGAATT+TGG 0.166483 3_1:-29146078 None:intergenic
GTTGCAGAGTTTAGAAATTC+AGG 0.225335 3_1:+29145959 None:intergenic
AAAGATGGCTGGCCCATTTC+AGG 0.234412 3_1:-29143335 Msa0355270:CDS
AACATGAAAGGTTTGAATTT+GGG 0.296289 3_1:-29146077 None:intergenic
CATATATAATAACAACTAGA+AGG 0.357563 3_1:+29143245 None:intergenic
ACCATCTTGCAGCTTCTTGT+AGG 0.370602 3_1:+29144079 None:intergenic
TGGGTCTGTGCTACACGAAA+TGG 0.418234 3_1:-29146049 Msa0355270:five_prime_UTR
TTGAAGGCAACTTCCTGAAA+TGG 0.431848 3_1:+29143322 None:intergenic
TTGGCTTGACAATGGGGATA+AGG 0.432340 3_1:-29144057 Msa0355270:CDS
GAGTATTCTGAATGCCCATC+AGG 0.445595 3_1:-29143394 Msa0355270:CDS
TATACCTTTGCAAACTCTGC+TGG 0.446252 3_1:+29144029 None:intergenic
TCTCCACCCTTCTTTCCTGA+TGG 0.455060 3_1:+29143379 None:intergenic
CTCCACCCTTCTTTCCTGAT+GGG 0.462426 3_1:+29143380 None:intergenic
GGTTTGAATTTGGGCCCAAT+GGG 0.464112 3_1:-29146068 Msa0355270:five_prime_UTR
GGGAAAGCTGCTGATGGGCT+TGG 0.479109 3_1:-29144503 Msa0355270:CDS
AGGTTTGAATTTGGGCCCAA+TGG 0.481040 3_1:-29146069 Msa0355270:five_prime_UTR
GGAGCACTGGTAACTCCAAC+AGG 0.481302 3_1:+29143295 None:intergenic
CGCAAAGGCAAAGGAGTCAA+AGG 0.482750 3_1:-29144588 Msa0355270:CDS
GGCAAAGGAGTCAAAGGGTA+AGG 0.483433 3_1:-29144582 Msa0355270:CDS
TTCGTGTAGCACAGACCCAT+TGG 0.485171 3_1:+29146053 None:intergenic
GGAAAGAAGGGTGGAGACCT+TGG 0.487014 3_1:-29143373 Msa0355270:CDS
ATGTGATTCCTCGTCTCGAC+TGG 0.487810 3_1:-29146025 Msa0355270:five_prime_UTR
GTCAAAGGGTAAGGGAAAGC+AGG 0.489595 3_1:-29144573 Msa0355270:CDS
GAGAATGCTTCCAAGGGAAA+AGG 0.493127 3_1:-29144533 Msa0355270:CDS
TGAATGCCCATCAGGAAAGA+AGG 0.494243 3_1:-29143386 Msa0355270:CDS
TGAAGGCAACTTCCTGAAAT+GGG 0.494251 3_1:+29143323 None:intergenic
ATGGTTTCCACGGGGAAAGA+TGG 0.495650 3_1:-29143350 Msa0355270:CDS
GAGACCTTGGATGGTTTCCA+CGG 0.503599 3_1:-29143360 Msa0355270:CDS
AACTCCAACAGGTGTGTTGA+AGG 0.504286 3_1:+29143306 None:intergenic
TCGTGTAGCACAGACCCATT+GGG 0.508316 3_1:+29146054 None:intergenic
AAGATGGTTGGCTTGACAAT+GGG 0.509183 3_1:-29144064 Msa0355270:CDS
CGTTGATTTGAAAGGAGCAC+TGG 0.509492 3_1:+29143282 None:intergenic
TGAATAGTTGTTCGAACGAT+GGG 0.520110 3_1:-29144617 Msa0355270:intron
AAAGGTGGGAAAGCTGCTGA+TGG 0.525616 3_1:-29144509 Msa0355270:CDS
GAGCAATACGTTGATTTGAA+AGG 0.530210 3_1:+29143274 None:intergenic
TTTCCACGGGGAAAGATGGC+TGG 0.533452 3_1:-29143346 Msa0355270:CDS
GGTACTTGCACTTATGTCAA+AGG 0.560594 3_1:-29144482 Msa0355270:intron
AGACCTTGGATGGTTTCCAC+GGG 0.562266 3_1:-29143359 Msa0355270:CDS
GCTTCCAAGGGAAAAGGAAA+AGG 0.563501 3_1:-29144527 Msa0355270:CDS
AAGTGATGAGAATGCTTCCA+AGG 0.564213 3_1:-29144540 Msa0355270:CDS
AGAAGGGTGGAGACCTTGGA+TGG 0.573215 3_1:-29143369 Msa0355270:CDS
AAATTCAGGAAGAACAATCA+AGG 0.573745 3_1:+29145973 None:intergenic
TCCAAGGGAAAAGGAAAAGG+TGG 0.576313 3_1:-29144524 Msa0355270:CDS
GTTGCCTTCAACACACCTGT+TGG 0.577492 3_1:-29143310 Msa0355270:CDS
ATGAATAGTTGTTCGAACGA+TGG 0.579048 3_1:-29144618 Msa0355270:intron
GCAAAGGCAAAGGAGTCAAA+GGG 0.585236 3_1:-29144587 Msa0355270:CDS
AAGGGAAAGCAGGCTGCAAG+TGG 0.585506 3_1:-29144563 Msa0355270:CDS
CAAGATGGTTGGCTTGACAA+TGG 0.586005 3_1:-29144065 Msa0355270:CDS
ACAAGAAGCTGCAAGATGGT+TGG 0.586477 3_1:-29144076 Msa0355270:CDS
GGGAAAAGACGCAAAGGCAA+AGG 0.594129 3_1:-29144597 Msa0355270:CDS
GAATGCCCATCAGGAAAGAA+GGG 0.596490 3_1:-29143385 Msa0355270:CDS
GCCTACAAGAAGCTGCAAGA+TGG 0.599336 3_1:-29144080 Msa0355270:CDS
AAGGTGGGAAAGCTGCTGAT+GGG 0.609652 3_1:-29144508 Msa0355270:CDS
AACGATGGGAAAAGACGCAA+AGG 0.622639 3_1:-29144603 Msa0355270:exon
TCCTCCAGCAGAGTTTGCAA+AGG 0.623533 3_1:-29144033 Msa0355270:intron
ACCTTTGCAAACTCTGCTGG+AGG 0.624084 3_1:+29144032 None:intergenic
ATATATAATAACAACTAGAA+GGG 0.625968 3_1:+29143246 None:intergenic
TTCCCCGTGGAAACCATCCA+AGG 0.629084 3_1:+29143356 None:intergenic
GCAAAGGAGTCAAAGGGTAA+GGG 0.629245 3_1:-29144581 Msa0355270:CDS
CATATCTTATGTGAGAAACA+AGG 0.634519 3_1:-29144116 Msa0355270:CDS
AGTGATGAGAATGCTTCCAA+GGG 0.642736 3_1:-29144539 Msa0355270:CDS
TGCCCATCAGGAAAGAAGGG+TGG 0.643391 3_1:-29143382 Msa0355270:CDS
CCAAGGGAAAAGGAAAAGGT+GGG 0.647496 3_1:-29144523 Msa0355270:CDS
AGATGGTTGGCTTGACAATG+GGG 0.681394 3_1:-29144063 Msa0355270:CDS
TATTCACACCAGTCGAGACG+AGG 0.685763 3_1:+29146017 None:intergenic
GGGCCAGCCATCTTTCCCCG+TGG 0.694677 3_1:+29143343 None:intergenic
GACCTTGGATGGTTTCCACG+GGG 0.727134 3_1:-29143358 Msa0355270:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATTATTAATAGATGATAAT+TGG - chr3_1:29143575-29143594 Msa0355270:intron 10.0%
!!! TATTATTATTTTCTTTACTT+TGG - chr3_1:29145294-29145313 Msa0355270:intron 10.0%
!!! TTTTAAAAGCAAATTTGAAA+CGG + chr3_1:29143716-29143735 None:intergenic 15.0%
!!! TTCAAATTTGCTTTTAAAAA+TGG - chr3_1:29143717-29143736 Msa0355270:intron 15.0%
!!! TCAAATTTGCTTTTAAAAAT+GGG - chr3_1:29143718-29143737 Msa0355270:intron 15.0%
!! ATCCTTATTATTCATTTATA+TGG - chr3_1:29143897-29143916 Msa0355270:intron 15.0%
!! ATCCATATAAATGAATAATA+AGG + chr3_1:29143902-29143921 None:intergenic 15.0%
!!! AAATGCTTTTCAAAAATAAA+CGG - chr3_1:29145075-29145094 Msa0355270:intron 15.0%
!!! ATATTTTGATATCAACAAAT+CGG + chr3_1:29145684-29145703 None:intergenic 15.0%
!! ATATATAATAACAACTAGAA+GGG + chr3_1:29146059-29146078 None:intergenic 15.0%
!!! GATTAGTTAGCTTATAATTA+TGG - chr3_1:29143515-29143534 Msa0355270:intron 20.0%
!! TTAGCTTATAATTATGGTTT+GGG - chr3_1:29143521-29143540 Msa0355270:intron 20.0%
!! AATTTAGTCCTATAAAATCA+CGG - chr3_1:29143751-29143770 Msa0355270:intron 20.0%
!!! TTGCAAATAGATTGAAATTT+TGG - chr3_1:29144978-29144997 Msa0355270:intron 20.0%
!!! TTGTTTTCATTGTTTTTGAA+AGG - chr3_1:29145014-29145033 Msa0355270:intron 20.0%
!!! AATGCTTTTCAAAAATAAAC+GGG - chr3_1:29145076-29145095 Msa0355270:intron 20.0%
!! TTAAATAGAAAGCCAAATAA+GGG + chr3_1:29145498-29145517 None:intergenic 20.0%
!! TTTAAATAGAAAGCCAAATA+AGG + chr3_1:29145499-29145518 None:intergenic 20.0%
!!! ATTTGGCTTTCTATTTAAAA+TGG - chr3_1:29145500-29145519 Msa0355270:intron 20.0%
!!! TTTGGCTTTCTATTTAAAAT+GGG - chr3_1:29145501-29145520 Msa0355270:intron 20.0%
!! CATATATAATAACAACTAGA+AGG + chr3_1:29146060-29146079 None:intergenic 20.0%
!! TTTTATTCATTTGTGCTTAG+AGG - chr3_1:29143368-29143387 Msa0355270:CDS 25.0%
! TGTAGATTGAAATTCAACTT+GGG + chr3_1:29143482-29143501 None:intergenic 25.0%
! ATGTAGATTGAAATTCAACT+TGG + chr3_1:29143483-29143502 None:intergenic 25.0%
!! GTTAGCTTATAATTATGGTT+TGG - chr3_1:29143520-29143539 Msa0355270:intron 25.0%
! ATTTAGTCCTATAAAATCAC+GGG - chr3_1:29143752-29143771 Msa0355270:intron 25.0%
! AAAAAGGACTAAATCATCTA+AGG + chr3_1:29143792-29143811 None:intergenic 25.0%
!! AGATGATTTAGTCCTTTTTA+AGG - chr3_1:29143793-29143812 Msa0355270:intron 25.0%
! TTATCTCTATGGATATCAAA+TGG - chr3_1:29144320-29144339 Msa0355270:intron 25.0%
! AATAAATCAGAAACTAACTC+TGG - chr3_1:29144469-29144488 Msa0355270:intron 25.0%
! AATTTCTTCATCTTCTATGT+TGG + chr3_1:29144558-29144577 None:intergenic 25.0%
! GTTGAAGTGAAAATAAAAAC+AGG + chr3_1:29144900-29144919 None:intergenic 25.0%
! AACTGTAAAATGAACATAGT+GGG + chr3_1:29144957-29144976 None:intergenic 25.0%
! AAACTGTAAAATGAACATAG+TGG + chr3_1:29144958-29144977 None:intergenic 25.0%
!! ATGCTTTTCAAAAATAAACG+GGG - chr3_1:29145077-29145096 Msa0355270:intron 25.0%
! CGTAGAATTACATTCATTTA+TGG - chr3_1:29145142-29145161 Msa0355270:intron 25.0%
! TATACACTAGGATAAAACAT+AGG - chr3_1:29145321-29145340 Msa0355270:intron 25.0%
!! ACTGCTTGGAAATTTTTAAA+AGG - chr3_1:29145392-29145411 Msa0355270:intron 25.0%
!!! CTGCTTGGAAATTTTTAAAA+GGG - chr3_1:29145393-29145412 Msa0355270:intron 25.0%
!! TTGGCTTTCTATTTAAAATG+GGG - chr3_1:29145502-29145521 Msa0355270:intron 25.0%
! GAAACTTATTATGTGGTAAA+TGG - chr3_1:29145529-29145548 Msa0355270:intron 25.0%
AAATTCAGGAAGAACAATCA+AGG + chr3_1:29143332-29143351 None:intergenic 30.0%
AACAGTGAACTGAAACAAAA+AGG + chr3_1:29143415-29143434 None:intergenic 30.0%
! TTGAAAACCCGTGATTTTAT+AGG + chr3_1:29143762-29143781 None:intergenic 30.0%
TTGGTTGCATAATATATGCA+TGG + chr3_1:29143854-29143873 None:intergenic 30.0%
TCATTGAAAAAAAGTCTACG+AGG - chr3_1:29144065-29144084 Msa0355270:CDS 30.0%
ATGAATGTTGCTAGTCATTT+CGG - chr3_1:29144220-29144239 Msa0355270:intron 30.0%
AGATTACAGTTAGAATCAGT+TGG + chr3_1:29144447-29144466 None:intergenic 30.0%
ACTGTAAAATGAACATAGTG+GGG + chr3_1:29144956-29144975 None:intergenic 30.0%
CATATCTTATGTGAGAAACA+AGG - chr3_1:29145186-29145205 Msa0355270:intron 30.0%
! TACTTTGGAAGTTATACACT+AGG - chr3_1:29145309-29145328 Msa0355270:intron 30.0%
AAAAAGAGACTATAACTGCT+TGG - chr3_1:29145378-29145397 Msa0355270:intron 30.0%
GTATACACTAAACCCTTATT+TGG - chr3_1:29145483-29145502 Msa0355270:intron 30.0%
!! ACATGCATATGTATTTTGGA+GGG + chr3_1:29145773-29145792 None:intergenic 30.0%
! ACTGACATGCATATGTATTT+TGG + chr3_1:29145777-29145796 None:intergenic 30.0%
GTTGCAGAGTTTAGAAATTC+AGG + chr3_1:29143346-29143365 None:intergenic 35.0%
TCAACTTGGGTTTCAGAAAA+TGG + chr3_1:29143469-29143488 None:intergenic 35.0%
!!! TCCTTTTTAAGGTGAATGAG+TGG - chr3_1:29143804-29143823 Msa0355270:intron 35.0%
!!! CCTTTTTAAGGTGAATGAGT+GGG - chr3_1:29143805-29143824 Msa0355270:intron 35.0%
!!! CTTTTTAAGGTGAATGAGTG+GGG - chr3_1:29143806-29143825 Msa0355270:intron 35.0%
! CATAATATATGCATGGACTG+GGG + chr3_1:29143847-29143866 None:intergenic 35.0%
GCATAATATATGCATGGACT+GGG + chr3_1:29143848-29143867 None:intergenic 35.0%
TGCATAATATATGCATGGAC+TGG + chr3_1:29143849-29143868 None:intergenic 35.0%
ATGCTGATGCTAAACATGAA+AGG - chr3_1:29143967-29143986 Msa0355270:intron 35.0%
CTAGCTAACCTTTGAATAAG+TGG - chr3_1:29144025-29144044 Msa0355270:intron 35.0%
TCACAACTCAATTTCAGTCA+AGG + chr3_1:29144118-29144137 None:intergenic 35.0%
! TTGAGTTGTGAAACTTAGAC+AGG - chr3_1:29144127-29144146 Msa0355270:intron 35.0%
!!! TTACTGATTTTGCTTTCTCC+AGG - chr3_1:29144150-29144169 Msa0355270:intron 35.0%
ATGAAGATTACACTTACACC+TGG + chr3_1:29144171-29144190 None:intergenic 35.0%
! TCTATATGTGCTCGTTTTGT+TGG - chr3_1:29144293-29144312 Msa0355270:intron 35.0%
!! CTATATGTGCTCGTTTTGTT+GGG - chr3_1:29144294-29144313 Msa0355270:intron 35.0%
! TTGTTGGGTTGTTATCTCTA+TGG - chr3_1:29144309-29144328 Msa0355270:intron 35.0%
TAGGTATCAAAACGAAAACG+TGG - chr3_1:29144363-29144382 Msa0355270:intron 35.0%
! AGAAAGCGTGTTTAACACTA+CGG - chr3_1:29144401-29144420 Msa0355270:intron 35.0%
ATGAATAGTTGTTCGAACGA+TGG - chr3_1:29144684-29144703 Msa0355270:intron 35.0%
TGAATAGTTGTTCGAACGAT+GGG - chr3_1:29144685-29144704 Msa0355270:intron 35.0%
ATTGAAGTAAATGAACCCTG+AGG + chr3_1:29144872-29144891 None:intergenic 35.0%
TGAAAGAAATTTAGCGTGTC+TGG + chr3_1:29145112-29145131 None:intergenic 35.0%
GGAAGGGGATAAAATAACTA+TGG + chr3_1:29145562-29145581 None:intergenic 35.0%
!! ATGCATATGTATTTTGGAGG+GGG + chr3_1:29145771-29145790 None:intergenic 35.0%
!! CATGCATATGTATTTTGGAG+GGG + chr3_1:29145772-29145791 None:intergenic 35.0%
!! GACATGCATATGTATTTTGG+AGG + chr3_1:29145774-29145793 None:intergenic 35.0%
!! GAGCAATACGTTGATTTGAA+AGG + chr3_1:29146031-29146050 None:intergenic 35.0%
AAGCTGAAATGCAAGTTGCT+AGG + chr3_1:29143657-29143676 None:intergenic 40.0%
CCCACTCATTCACCTTAAAA+AGG + chr3_1:29143808-29143827 None:intergenic 40.0%
AACCAACTGAGCTATGATCA+CGG - chr3_1:29143868-29143887 Msa0355270:intron 40.0%
CATAAGCGCCACTTATTCAA+AGG + chr3_1:29144036-29144055 None:intergenic 40.0%
AAAGTCTACGAGGTCTTCTT+AGG - chr3_1:29144075-29144094 Msa0355270:CDS 40.0%
! TCAAGGTGTTCAACCAAATG+TGG + chr3_1:29144101-29144120 None:intergenic 40.0%
TGGAGCTCGTGAATCAATTT+CGG - chr3_1:29144262-29144281 Msa0355270:intron 40.0%
!! TGACGTCGATTTCTTTAGCT+AGG - chr3_1:29144344-29144363 Msa0355270:intron 40.0%
GTGGAGATTGTTAGATGATC+AGG + chr3_1:29144511-29144530 None:intergenic 40.0%
TATCACACATCAGGTTACAG+TGG + chr3_1:29144530-29144549 None:intergenic 40.0%
TTGGATGTCTATCACACATC+AGG + chr3_1:29144539-29144558 None:intergenic 40.0%
AAGTGATGAGAATGCTTCCA+AGG - chr3_1:29144762-29144781 Msa0355270:intron 40.0%
AGTGATGAGAATGCTTCCAA+GGG - chr3_1:29144763-29144782 Msa0355270:intron 40.0%
GGTACTTGCACTTATGTCAA+AGG - chr3_1:29144820-29144839 Msa0355270:intron 40.0%
! GAACATAGTGGGGAAACTAT+TGG + chr3_1:29144946-29144965 None:intergenic 40.0%
!! AAGATGGTTGGCTTGACAAT+GGG - chr3_1:29145238-29145257 Msa0355270:intron 40.0%
TATACCTTTGCAAACTCTGC+TGG + chr3_1:29145276-29145295 None:intergenic 40.0%
GGGCTGAGAAACTTATTATG+TGG - chr3_1:29145522-29145541 Msa0355270:intron 40.0%
GCATTGAATCCATTTCTGAG+CGG + chr3_1:29145583-29145602 None:intergenic 40.0%
GTCAGTAAATACCCGTCAAT+GGG + chr3_1:29145731-29145750 None:intergenic 40.0%
!! TGCATATGTATTTTGGAGGG+GGG + chr3_1:29145770-29145789 None:intergenic 40.0%
!! ATGCATGTCAGTTTTGTCGA+AGG - chr3_1:29145785-29145804 Msa0355270:intron 40.0%
TGAAGGCAACTTCCTGAAAT+GGG + chr3_1:29145982-29146001 None:intergenic 40.0%
TTGAAGGCAACTTCCTGAAA+TGG + chr3_1:29145983-29146002 None:intergenic 40.0%
AGGTTTGAATTTGGGCCCAA+TGG - chr3_1:29143233-29143252 Msa0355270:CDS 45.0%
GGTTTGAATTTGGGCCCAAT+GGG - chr3_1:29143234-29143253 Msa0355270:CDS 45.0%
TACAGTAGCACCATCACTAG+CGG - chr3_1:29143676-29143695 Msa0355270:intron 45.0%
ACCAACTGAGCTATGATCAC+GGG - chr3_1:29143869-29143888 Msa0355270:intron 45.0%
AGGTCTTCTTAGGCCACATT+TGG - chr3_1:29144085-29144104 Msa0355270:CDS 45.0%
GTACGAGTCATGTGTTTGTC+TGG - chr3_1:29144242-29144261 Msa0355270:intron 45.0%
AACGATGGGAAAAGACGCAA+AGG - chr3_1:29144699-29144718 Msa0355270:intron 45.0%
GCAAAGGCAAAGGAGTCAAA+GGG - chr3_1:29144715-29144734 Msa0355270:intron 45.0%
GCAAAGGAGTCAAAGGGTAA+GGG - chr3_1:29144721-29144740 Msa0355270:intron 45.0%
GAGAATGCTTCCAAGGGAAA+AGG - chr3_1:29144769-29144788 Msa0355270:intron 45.0%
GCTTCCAAGGGAAAAGGAAA+AGG - chr3_1:29144775-29144794 Msa0355270:intron 45.0%
TCCAAGGGAAAAGGAAAAGG+TGG - chr3_1:29144778-29144797 Msa0355270:intron 45.0%
CCAAGGGAAAAGGAAAAGGT+GGG - chr3_1:29144779-29144798 Msa0355270:intron 45.0%
ACCATCTTGCAGCTTCTTGT+AGG + chr3_1:29145226-29145245 None:intergenic 45.0%
ACAAGAAGCTGCAAGATGGT+TGG - chr3_1:29145226-29145245 Msa0355270:intron 45.0%
!! CAAGATGGTTGGCTTGACAA+TGG - chr3_1:29145237-29145256 Msa0355270:intron 45.0%
!! AGATGGTTGGCTTGACAATG+GGG - chr3_1:29145239-29145258 Msa0355270:intron 45.0%
! TTGGCTTGACAATGGGGATA+AGG - chr3_1:29145245-29145264 Msa0355270:intron 45.0%
AATCCATTTCTGAGCGGAAG+GGG + chr3_1:29145577-29145596 None:intergenic 45.0%
GAATCCATTTCTGAGCGGAA+GGG + chr3_1:29145578-29145597 None:intergenic 45.0%
TGAATCCATTTCTGAGCGGA+AGG + chr3_1:29145579-29145598 None:intergenic 45.0%
ACAGCTGAATTCAAGACTGC+TGG + chr3_1:29145617-29145636 None:intergenic 45.0%
GCAGTCTTGAATTCAGCTGT+AGG - chr3_1:29145617-29145636 Msa0355270:intron 45.0%
CTGCATACAATGCCCATTGA+CGG - chr3_1:29145716-29145735 Msa0355270:intron 45.0%
TGCATACAATGCCCATTGAC+GGG - chr3_1:29145717-29145736 Msa0355270:intron 45.0%
GGTCAGTAAATACCCGTCAA+TGG + chr3_1:29145732-29145751 None:intergenic 45.0%
GAGTATTCTGAATGCCCATC+AGG - chr3_1:29145908-29145927 Msa0355270:intron 45.0%
TGAATGCCCATCAGGAAAGA+AGG - chr3_1:29145916-29145935 Msa0355270:intron 45.0%
GAATGCCCATCAGGAAAGAA+GGG - chr3_1:29145917-29145936 Msa0355270:intron 45.0%
AACTCCAACAGGTGTGTTGA+AGG + chr3_1:29145999-29146018 None:intergenic 45.0%
!! CGTTGATTTGAAAGGAGCAC+TGG + chr3_1:29146023-29146042 None:intergenic 45.0%
TCGTGTAGCACAGACCCATT+GGG + chr3_1:29143251-29143270 None:intergenic 50.0%
TTCGTGTAGCACAGACCCAT+TGG + chr3_1:29143252-29143271 None:intergenic 50.0%
TGGGTCTGTGCTACACGAAA+TGG - chr3_1:29143253-29143272 Msa0355270:CDS 50.0%
ATGTGATTCCTCGTCTCGAC+TGG - chr3_1:29143277-29143296 Msa0355270:CDS 50.0%
TATTCACACCAGTCGAGACG+AGG + chr3_1:29143288-29143307 None:intergenic 50.0%
CCAACTGAGCTATGATCACG+GGG - chr3_1:29143870-29143889 Msa0355270:intron 50.0%
GGGAAAAGACGCAAAGGCAA+AGG - chr3_1:29144705-29144724 Msa0355270:intron 50.0%
CGCAAAGGCAAAGGAGTCAA+AGG - chr3_1:29144714-29144733 Msa0355270:intron 50.0%
GGCAAAGGAGTCAAAGGGTA+AGG - chr3_1:29144720-29144739 Msa0355270:intron 50.0%
GTCAAAGGGTAAGGGAAAGC+AGG - chr3_1:29144729-29144748 Msa0355270:intron 50.0%
! CCCACCTTTTCCTTTTCCCT+TGG + chr3_1:29144782-29144801 None:intergenic 50.0%
AAAGGTGGGAAAGCTGCTGA+TGG - chr3_1:29144793-29144812 Msa0355270:intron 50.0%
AAGGTGGGAAAGCTGCTGAT+GGG - chr3_1:29144794-29144813 Msa0355270:intron 50.0%
! ACCCTGAGGTGCTTGTGAAT+GGG + chr3_1:29144858-29144877 None:intergenic 50.0%
! AACCCTGAGGTGCTTGTGAA+TGG + chr3_1:29144859-29144878 None:intergenic 50.0%
GCCTACAAGAAGCTGCAAGA+TGG - chr3_1:29145222-29145241 Msa0355270:intron 50.0%
TCCTCCAGCAGAGTTTGCAA+AGG - chr3_1:29145269-29145288 Msa0355270:intron 50.0%
ACCTTTGCAAACTCTGCTGG+AGG + chr3_1:29145273-29145292 None:intergenic 50.0%
TATCCCCTTCCGCTCAGAAA+TGG - chr3_1:29145571-29145590 Msa0355270:intron 50.0%
GACGGGTATTTACTGACCAC+AGG - chr3_1:29145734-29145753 Msa0355270:intron 50.0%
!! TGTATTTTGGAGGGGGGATC+AGG + chr3_1:29145764-29145783 None:intergenic 50.0%
TAATATTTCGCCGACCTCGC+AGG - chr3_1:29145877-29145896 Msa0355270:intron 50.0%
ATACTCTTGAGCTACCTGCG+AGG + chr3_1:29145894-29145913 None:intergenic 50.0%
CTCCACCCTTCTTTCCTGAT+GGG + chr3_1:29145925-29145944 None:intergenic 50.0%
TCTCCACCCTTCTTTCCTGA+TGG + chr3_1:29145926-29145945 None:intergenic 50.0%
GAGACCTTGGATGGTTTCCA+CGG - chr3_1:29145942-29145961 Msa0355270:five_prime_UTR 50.0%
AGACCTTGGATGGTTTCCAC+GGG - chr3_1:29145943-29145962 Msa0355270:five_prime_UTR 50.0%
ATGGTTTCCACGGGGAAAGA+TGG - chr3_1:29145952-29145971 Msa0355270:five_prime_UTR 50.0%
! AAAGATGGCTGGCCCATTTC+AGG - chr3_1:29145967-29145986 Msa0355270:five_prime_UTR 50.0%
GTTGCCTTCAACACACCTGT+TGG - chr3_1:29145992-29146011 Msa0355270:five_prime_UTR 50.0%
ACCATCACTAGCGGCTGCTA+CGG - chr3_1:29143685-29143704 Msa0355270:intron 55.0%
! AGGTGAATGAGTGGGGTGTC+TGG - chr3_1:29143813-29143832 Msa0355270:intron 55.0%
CCCCGTGATCATAGCTCAGT+TGG + chr3_1:29143873-29143892 None:intergenic 55.0%
AAGGGAAAGCAGGCTGCAAG+TGG - chr3_1:29144739-29144758 Msa0355270:intron 55.0%
TCCCCATTCACAAGCACCTC+AGG - chr3_1:29144853-29144872 Msa0355270:intron 55.0%
! CCCTGAGGTGCTTGTGAATG+GGG + chr3_1:29144857-29144876 None:intergenic 55.0%
CCCCATTCACAAGCACCTCA+GGG - chr3_1:29144854-29144873 Msa0355270:intron 55.0%
TCTTGAGCTACCTGCGAGGT+CGG + chr3_1:29145890-29145909 None:intergenic 55.0%
TGCCCATCAGGAAAGAAGGG+TGG - chr3_1:29145920-29145939 Msa0355270:intron 55.0%
GGAAAGAAGGGTGGAGACCT+TGG - chr3_1:29145929-29145948 Msa0355270:intron 55.0%
AGAAGGGTGGAGACCTTGGA+TGG - chr3_1:29145933-29145952 Msa0355270:intron 55.0%
GACCTTGGATGGTTTCCACG+GGG - chr3_1:29145944-29145963 Msa0355270:five_prime_UTR 55.0%
TTCCCCGTGGAAACCATCCA+AGG + chr3_1:29145949-29145968 None:intergenic 55.0%
TTTCCACGGGGAAAGATGGC+TGG - chr3_1:29145956-29145975 Msa0355270:five_prime_UTR 55.0%
!! GGAGCACTGGTAACTCCAAC+AGG + chr3_1:29146010-29146029 None:intergenic 55.0%
ACCGTAGCAGCCGCTAGTGA+TGG + chr3_1:29143689-29143708 None:intergenic 60.0%
!! GGGAAAGCTGCTGATGGGCT+TGG - chr3_1:29144799-29144818 Msa0355270:intron 60.0%
GGGGGGATCAGGATTTCCTG+TGG + chr3_1:29145753-29145772 None:intergenic 60.0%
GGGCCAGCCATCTTTCCCCG+TGG + chr3_1:29145962-29145981 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr3_1 gene 29143231 29146093 29143231 ID=Msa0355270;Name=Msa0355270
chr3_1 mRNA 29143231 29146093 29143231 ID=Msa0355270-mRNA-1;Parent=Msa0355270;Name=Msa0355270-mRNA-1;_AED=0.19;_eAED=0.19;_QI=170|1|0.75|1|0.66|0.5|4|0|147
chr3_1 exon 29143231 29143425 29143231 ID=Msa0355270-mRNA-1:exon:6107;Parent=Msa0355270-mRNA-1
chr3_1 exon 29144034 29144143 29144034 ID=Msa0355270-mRNA-1:exon:6106;Parent=Msa0355270-mRNA-1
chr3_1 exon 29144483 29144632 29144483 ID=Msa0355270-mRNA-1:exon:6105;Parent=Msa0355270-mRNA-1
chr3_1 exon 29145935 29146093 29145935 ID=Msa0355270-mRNA-1:exon:6104;Parent=Msa0355270-mRNA-1
chr3_1 five_prime_UTR 29145935 29146093 29145935 ID=Msa0355270-mRNA-1:five_prime_utr;Parent=Msa0355270-mRNA-1
chr3_1 five_prime_UTR 29144622 29144632 29144622 ID=Msa0355270-mRNA-1:five_prime_utr;Parent=Msa0355270-mRNA-1
chr3_1 CDS 29144483 29144621 29144483 ID=Msa0355270-mRNA-1:cds;Parent=Msa0355270-mRNA-1
chr3_1 CDS 29144034 29144143 29144034 ID=Msa0355270-mRNA-1:cds;Parent=Msa0355270-mRNA-1
chr3_1 CDS 29143231 29143425 29143231 ID=Msa0355270-mRNA-1:cds;Parent=Msa0355270-mRNA-1
Gene Sequence

>Msa0355270

ATGGGAAAAGACGCAAAGGCAAAGGAGTCAAAGGGTAAGGGAAAGCAGGCTGCAAGTGGAAGTGATGAGAATGCTTCCAAGGGAAAAGGAAAAGGTGGGAAAGCTGCTGATGGGCTTGGTACTTGCACTTATGTCAAAGCAAGACATATCTTATGTGAGAAACAAGGTAAGATTAATGAAGCCTACAAGAAGCTGCAAGATGGTTGGCTTGACAATGGGGATAAGGTTCCTCCAGCAGAGTTTGCAAAGGTAGCTCAAGAGTATTCTGAATGCCCATCAGGAAAGAAGGGTGGAGACCTTGGATGGTTTCCACGGGGAAAGATGGCTGGCCCATTTCAGGAAGTTGCCTTCAACACACCTGTTGGAGTTACCAGTGCTCCTTTCAAATCAACGTATTGCTCTCGCACCCTTCTAGTTGTTATTATATATGCATTATTGCTCTGA

Protein sequence

>Msa0355270

MGKDAKAKESKGKGKQAASGSDENASKGKGKGGKAADGLGTCTYVKARHILCEKQGKINEAYKKLQDGWLDNGDKVPPAEFAKVAQEYSECPSGKKGGDLGWFPRGKMAGPFQEVAFNTPVGVTSAPFKSTYCSRTLLVVIIYALLL*