Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0997300 | XP_013442679.1 | 95.821 | 335 | 13 | 1 | 1 | 335 | 3 | 336 | 0.0 | 643 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0997300 | sp|Q9SUC9|UGPI7_ARATH | 41.852 | 270 | 134 | 8 | 36 | 301 | 26 | 276 | 6.68e-64 | 207 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0997300 | G8A0D6 | 95.821 | 335 | 13 | 1 | 1 | 335 | 3 | 336 | 0.0 | 643 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0620270 | Msa0997300 | 0.810747 | 9.882669e-51 | -8.615850e-47 |
| Msa0624240 | Msa0997300 | 0.801442 | 8.988794e-49 | -8.615850e-47 |
| Msa0738970 | Msa0997300 | 0.805309 | 1.420726e-49 | -8.615850e-47 |
| Msa0815340 | Msa0997300 | 0.801465 | 8.890190e-49 | -8.615850e-47 |
| Msa0382560 | Msa0997300 | 0.806108 | 9.653265e-50 | -8.615850e-47 |
| Msa0434630 | Msa0997300 | 0.807406 | 5.135112e-50 | -8.615850e-47 |
| Msa0439780 | Msa0997300 | 0.811578 | 6.528008e-51 | -8.615850e-47 |
| Msa0997300 | Msa1061180 | 0.810433 | 1.155325e-50 | -8.615850e-47 |
| Msa0997300 | Msa1149760 | 0.818909 | 1.532784e-52 | -8.615850e-47 |
| Msa0997300 | Msa1208510 | 0.817864 | 2.642850e-52 | -8.615850e-47 |
| Msa0997300 | Msa1215770 | 0.800065 | 1.716776e-48 | -8.615850e-47 |
| Msa0997300 | Msa1232860 | 0.802367 | 5.801683e-49 | -8.615850e-47 |
| Msa0997300 | Msa1306540 | 0.806955 | 6.396302e-50 | -8.615850e-47 |
| Msa0997300 | Msa1312730 | 0.802478 | 5.503566e-49 | -8.615850e-47 |
| Msa0997300 | Msa1330240 | 0.803748 | 3.006232e-49 | -8.615850e-47 |
| Msa0997300 | Msa1336320 | 0.816958 | 4.228115e-52 | -8.615850e-47 |
| Msa0997300 | Msa1354040 | 0.803269 | 3.779150e-49 | -8.615850e-47 |
| Msa0997300 | Msa1367810 | 0.822336 | 2.501496e-53 | -8.615850e-47 |
| Msa0997300 | Msa1369860 | 0.810093 | 1.368085e-50 | -8.615850e-47 |
| Msa0997300 | Msa1375400 | 0.813747 | 2.188598e-51 | -8.615850e-47 |
| Msa0997300 | Msa1406550 | 0.803464 | 3.442791e-49 | -8.615850e-47 |
| Msa0997300 | Msa1429830 | 0.817589 | 3.048520e-52 | -8.615850e-47 |
| Msa0997300 | Msa1432470 | 0.813931 | 1.994081e-51 | -8.615850e-47 |
| Msa0997300 | Msa1437150 | 0.807002 | 6.252806e-50 | -8.615850e-47 |
| Msa0997300 | Msa1444750 | 0.801339 | 9.433637e-49 | -8.615850e-47 |
| Msa0253410 | Msa0997300 | 0.812259 | 4.638211e-51 | -8.615850e-47 |
| Msa0524020 | Msa0997300 | 0.812247 | 4.666211e-51 | -8.615850e-47 |
| Msa0571070 | Msa0997300 | 0.837772 | 4.267107e-57 | -8.615850e-47 |
| Msa0851870 | Msa0997300 | 0.803101 | 4.094129e-49 | -8.615850e-47 |
| Msa0859390 | Msa0997300 | 0.805936 | 1.049245e-49 | -8.615850e-47 |
| Msa0930330 | Msa0997300 | 0.801265 | 9.767277e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0997300 | MtrunA17_Chr6g0482961 | 95.821 | 335 | 13 | 1 | 1 | 335 | 3 | 336 | 0.0 | 643 |
| Msa0997300 | MtrunA17_Chr8g0392751 | 62.609 | 345 | 107 | 9 | 3 | 335 | 1 | 335 | 1.24e-137 | 394 |
| Msa0997300 | MtrunA17_Chr4g0022791 | 39.144 | 327 | 168 | 13 | 11 | 323 | 4 | 313 | 1.44e-67 | 214 |
| Msa0997300 | MtrunA17_Chr2g0323391 | 42.545 | 275 | 124 | 8 | 45 | 307 | 25 | 277 | 8.00e-64 | 204 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0997300 | AT3G18050.1 | 57.785 | 289 | 102 | 6 | 45 | 320 | 42 | 323 | 2.11e-104 | 310 |
| Msa0997300 | AT4G28100.1 | 41.852 | 270 | 134 | 8 | 36 | 301 | 26 | 276 | 6.80e-65 | 207 |
Find 85 sgRNAs with CRISPR-Local
Find 155 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGTTAATGTTGTTGGGAAAA+TGG | 0.205495 | 6_4:+76565728 | None:intergenic |
| CTTTAACATAAGATTGTTCT+TGG | 0.214285 | 6_4:+76565694 | None:intergenic |
| CAAGAACAATCTTATGTTAA+AGG | 0.223232 | 6_4:-76565693 | Msa0997300:CDS |
| TTGTTGGGAAAATGGGATTA+AGG | 0.244672 | 6_4:+76565736 | None:intergenic |
| GTGCTTGAATAGTCTCTATT+TGG | 0.254239 | 6_4:-76565193 | Msa0997300:intron |
| TTTGTTATTGTTACTTTGTT+TGG | 0.259799 | 6_4:-76563443 | Msa0997300:CDS |
| CAACAAAGATTGTGAGCTAA+TGG | 0.271739 | 6_4:-76563668 | Msa0997300:CDS |
| GAAGAGCTTAGGTTATATAT+TGG | 0.300534 | 6_4:+76565929 | None:intergenic |
| AGTTCATTTGAGAGAGATAA+AGG | 0.312739 | 6_4:+76565666 | None:intergenic |
| AATGCATCAGGACAGTTAAA+AGG | 0.327802 | 6_4:+76565333 | None:intergenic |
| CAATTACTAATAACATAAAA+TGG | 0.329498 | 6_4:+76563304 | None:intergenic |
| AGACAAAGTTGGTTGGAGTT+TGG | 0.338347 | 6_4:+76563471 | None:intergenic |
| TATATTGTTATTGTGGGATT+AGG | 0.343357 | 6_4:-76565362 | Msa0997300:CDS |
| AGAAGAGAATGTAGAGGAAA+AGG | 0.346694 | 6_4:+76565805 | None:intergenic |
| ATCTTTGTTGTGAATCTTTG+TGG | 0.352616 | 6_4:+76563681 | None:intergenic |
| AAGAACAATCTTATGTTAAA+GGG | 0.360626 | 6_4:-76565692 | Msa0997300:CDS |
| GTTAATGTTGTTGGGAAAAT+GGG | 0.361945 | 6_4:+76565729 | None:intergenic |
| GGTAATGGATTTCAAGGTCT+TGG | 0.363694 | 6_4:-76565228 | Msa0997300:CDS |
| GCCAAATGAGAGTTGTGATT+TGG | 0.373180 | 6_4:-76565385 | Msa0997300:CDS |
| TGTTGGGAAAATGGGATTAA+GGG | 0.381048 | 6_4:+76565737 | None:intergenic |
| AAGAGCTTAGGTTATATATT+GGG | 0.381422 | 6_4:+76565930 | None:intergenic |
| TTAGTAATTGATATAGTGTA+AGG | 0.387902 | 6_4:-76563291 | Msa0997300:three_prime_UTR |
| ACCAAATCACAACTCTCATT+TGG | 0.403979 | 6_4:+76565384 | None:intergenic |
| ATCATCATTTGACATGCCTT+TGG | 0.404706 | 6_4:-76565481 | Msa0997300:CDS |
| AGGAAAAGGGTGATTAGATA+TGG | 0.411548 | 6_4:+76565819 | None:intergenic |
| AGGGTTGATGATGTTGAGTT+AGG | 0.414598 | 6_4:+76565756 | None:intergenic |
| GAAGGGATTGTTAATGTTGT+TGG | 0.415245 | 6_4:+76565720 | None:intergenic |
| GAAGAGAATGTAGAGGAAAA+GGG | 0.418542 | 6_4:+76565806 | None:intergenic |
| AACAAAGATTGTGAGCTAAT+GGG | 0.418766 | 6_4:-76563667 | Msa0997300:CDS |
| TAAGATTGTTCTTGGAATGA+AGG | 0.431330 | 6_4:+76565702 | None:intergenic |
| CATGGCTTCTGTCGAAGAAT+CGG | 0.431525 | 6_4:-76563639 | Msa0997300:CDS |
| AGAAACATGTGTGGATGGTT+TGG | 0.434390 | 6_4:-76565445 | Msa0997300:CDS |
| ATTTGGTATATTGTTATTGT+GGG | 0.436772 | 6_4:-76565368 | Msa0997300:CDS |
| TTGGAGATGGAAGTGTTAGA+AGG | 0.438920 | 6_4:-76565284 | Msa0997300:CDS |
| GATTTGGTATATTGTTATTG+TGG | 0.440108 | 6_4:-76565369 | Msa0997300:CDS |
| AAGGGATTGTTAATGTTGTT+GGG | 0.448059 | 6_4:+76565721 | None:intergenic |
| AGATGGAAGTGTTAGAAGGT+TGG | 0.448408 | 6_4:-76565280 | Msa0997300:CDS |
| TTTGTAACAGAAAATGCATC+AGG | 0.450155 | 6_4:+76565321 | None:intergenic |
| TGGAGAAGAATTGCTTGAGT+AGG | 0.462891 | 6_4:-76565260 | Msa0997300:CDS |
| TCATACTCCTCCACTGCCCT+TGG | 0.468218 | 6_4:-76565540 | Msa0997300:CDS |
| GCTTTGTTGTTGAACAAAGA+TGG | 0.470689 | 6_4:-76563580 | Msa0997300:CDS |
| TATAACCATGCTGCAAGAAC+CGG | 0.476225 | 6_4:+76565567 | None:intergenic |
| CGACCGTAGCCGATGCTGTC+CGG | 0.482366 | 6_4:-76565586 | Msa0997300:CDS |
| AGTGGAGAACTTGTTGGAGA+TGG | 0.493754 | 6_4:-76565297 | Msa0997300:CDS |
| TGATGAGAATGGAAGGAAAG+TGG | 0.502154 | 6_4:+76565884 | None:intergenic |
| AAGATTGTTCTTGGAATGAA+GGG | 0.502562 | 6_4:+76565703 | None:intergenic |
| ACACATGTTTCTGAGTCATC+TGG | 0.508643 | 6_4:+76565456 | None:intergenic |
| GAAAAGGCTTTGAAAGTGAG+AGG | 0.517885 | 6_4:-76565423 | Msa0997300:CDS |
| AAGGTCTAAGATGATGAGAA+TGG | 0.519208 | 6_4:+76565873 | None:intergenic |
| CTCTCAAATGAACTCTTCAA+TGG | 0.519607 | 6_4:-76565657 | Msa0997300:CDS |
| ATGTGTGGATGGTTTGGAAA+AGG | 0.525959 | 6_4:-76565439 | Msa0997300:CDS |
| ATGACGACGACGATGATGAA+TGG | 0.533881 | 6_4:+76565514 | None:intergenic |
| TAATGACATGATGGTGTTGA+AGG | 0.536118 | 6_4:+76565854 | None:intergenic |
| ATTCAAGCAAAGAAGAAGAC+AGG | 0.542446 | 6_4:-76563705 | Msa0997300:CDS |
| CTATTTAGAGTGCATGATTG+TGG | 0.557315 | 6_4:+76563550 | None:intergenic |
| AATGGATTTCAAGGTCTTGG+AGG | 0.558012 | 6_4:-76565225 | Msa0997300:CDS |
| GCATTCCTAAGCAACAAAAG+AGG | 0.558679 | 6_4:+76563326 | None:intergenic |
| AACAAAGAAAGAGACAAAGT+TGG | 0.560500 | 6_4:+76563460 | None:intergenic |
| GCTGTCCGGTTCTTGCAGCA+TGG | 0.562514 | 6_4:-76565572 | Msa0997300:CDS |
| TCTAAGATGATGAGAATGGA+AGG | 0.563005 | 6_4:+76565877 | None:intergenic |
| CTGCAAGAACCGGACAGCAT+CGG | 0.565284 | 6_4:+76565577 | None:intergenic |
| AAGAAAGAGACAAAGTTGGT+TGG | 0.568482 | 6_4:+76563464 | None:intergenic |
| CATTCCTAAGCAACAAAAGA+GGG | 0.571997 | 6_4:+76563327 | None:intergenic |
| TCATGCACTCTAAATAGTGA+TGG | 0.573743 | 6_4:-76563544 | Msa0997300:CDS |
| TGAGTGAGACTCATGTAGGA+AGG | 0.575617 | 6_4:+76565780 | None:intergenic |
| ACGATGATGAATGGTTTCCA+AGG | 0.579546 | 6_4:+76565523 | None:intergenic |
| TGAATGGTTTCCAAGGGCAG+TGG | 0.585630 | 6_4:+76565530 | None:intergenic |
| AAGGGAAGAAGAGAATGTAG+AGG | 0.587484 | 6_4:+76565799 | None:intergenic |
| GAACCGGACAGCATCGGCTA+CGG | 0.587763 | 6_4:+76565583 | None:intergenic |
| AGGATGAGTGAGACTCATGT+AGG | 0.588608 | 6_4:+76565776 | None:intergenic |
| TCTGAGTCATCTGGTACCAA+AGG | 0.589351 | 6_4:+76565465 | None:intergenic |
| ATGGTTTCCAAGGGCAGTGG+AGG | 0.590723 | 6_4:+76565533 | None:intergenic |
| GCTTAGGTTATATATTGGGT+AGG | 0.594481 | 6_4:+76565934 | None:intergenic |
| AGGGTGATTAGATATGGAAG+TGG | 0.594483 | 6_4:+76565825 | None:intergenic |
| GAGTGAGACTCATGTAGGAA+GGG | 0.607216 | 6_4:+76565781 | None:intergenic |
| TGGAAGTGATAATGACATGA+TGG | 0.609451 | 6_4:+76565845 | None:intergenic |
| TAGTAATTGATATAGTGTAA+GGG | 0.614670 | 6_4:-76563290 | Msa0997300:three_prime_UTR |
| TCAGATGAATCAACAGCTAG+AGG | 0.628109 | 6_4:+76563517 | None:intergenic |
| GTGAGCTAATGGGTTTGACA+TGG | 0.629421 | 6_4:-76563657 | Msa0997300:CDS |
| CGATGATGAATGGTTTCCAA+GGG | 0.634070 | 6_4:+76565524 | None:intergenic |
| GACTCAGAAACATGTGTGGA+TGG | 0.634993 | 6_4:-76565450 | Msa0997300:CDS |
| GCATGTAGTTCATCAAAACA+TGG | 0.638260 | 6_4:-76565624 | Msa0997300:CDS |
| GCTTCTGTCGAAGAATCGGA+CGG | 0.693830 | 6_4:-76563635 | Msa0997300:CDS |
| AGATGACTCAGAAACATGTG+TGG | 0.726363 | 6_4:-76565454 | Msa0997300:CDS |
| TCGGACGGCATATATTCACA+CGG | 0.774284 | 6_4:-76563620 | Msa0997300:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAAATTATAATTTTTGTAGA+AGG | + | chr6_4:76564103-76564122 | None:intergenic | 10.0% |
| !! | TAGAAAATATAAAATAAAGT+TGG | + | chr6_4:76564549-76564568 | None:intergenic | 10.0% |
| !!! | TATTTTTGCTTATATTTCAT+TGG | + | chr6_4:76564281-76564300 | None:intergenic | 15.0% |
| !! | AATAAGATAAAAACAACTTA+TGG | + | chr6_4:76564469-76564488 | None:intergenic | 15.0% |
| !! | GTTTATAGTTTATATGAAAA+CGG | - | chr6_4:76564522-76564541 | Msa0997300:intron | 15.0% |
| !!! | AAATCTTGTTTTACAAATAT+AGG | + | chr6_4:76564971-76564990 | None:intergenic | 15.0% |
| !!! | CAATTGTTTATCTATTTTAT+TGG | + | chr6_4:76565145-76565164 | None:intergenic | 15.0% |
| !!! | TTTTTAAGTAACAAACATTT+TGG | + | chr6_4:76565438-76565457 | None:intergenic | 15.0% |
| !! | CAATTACTAATAACATAAAA+TGG | + | chr6_4:76565961-76565980 | None:intergenic | 15.0% |
| !! | AAGAACAATCTTATGTTAAA+GGG | - | chr6_4:76563570-76563589 | Msa0997300:CDS | 20.0% |
| !!! | ATTTGGTATATTGTTATTGT+GGG | - | chr6_4:76563894-76563913 | Msa0997300:intron | 20.0% |
| !!! | TTTTTCTTCTATTCTATCTA+TGG | - | chr6_4:76564121-76564140 | Msa0997300:intron | 20.0% |
| !! | TTATATTTCATTGGAGTATA+TGG | + | chr6_4:76564272-76564291 | None:intergenic | 20.0% |
| !! | AAGCAAAAATAGTAGTTAAA+TGG | - | chr6_4:76564290-76564309 | Msa0997300:intron | 20.0% |
| !!! | CTTAATTTCTAGAAACATTA+AGG | + | chr6_4:76564759-76564778 | None:intergenic | 20.0% |
| !! | GATATATGACTCAAATAAAA+TGG | - | chr6_4:76564944-76564963 | Msa0997300:intron | 20.0% |
| !!! | TTTATCTATTTTATTGGTTG+AGG | + | chr6_4:76565139-76565158 | None:intergenic | 20.0% |
| !!! | TTTGTTATTGTTACTTTGTT+TGG | - | chr6_4:76565819-76565838 | Msa0997300:CDS | 20.0% |
| !! | AAATCAGAACAAAAAGATAA+TGG | - | chr6_4:76565880-76565899 | Msa0997300:five_prime_UTR | 20.0% |
| !! | TTAGTAATTGATATAGTGTA+AGG | - | chr6_4:76565971-76565990 | Msa0997300:five_prime_UTR | 20.0% |
| ! | AAGAGCTTAGGTTATATATT+GGG | + | chr6_4:76563335-76563354 | None:intergenic | 25.0% |
| ! | TGATAAAAAATGAAGAGCTT+AGG | + | chr6_4:76563347-76563366 | None:intergenic | 25.0% |
| ! | CTTTAACATAAGATTGTTCT+TGG | + | chr6_4:76563571-76563590 | None:intergenic | 25.0% |
| ! | CAAGAACAATCTTATGTTAA+AGG | - | chr6_4:76563569-76563588 | Msa0997300:CDS | 25.0% |
| !! | GATTTGGTATATTGTTATTG+TGG | - | chr6_4:76563893-76563912 | Msa0997300:intron | 25.0% |
| !! | TATATTGTTATTGTGGGATT+AGG | - | chr6_4:76563900-76563919 | Msa0997300:intron | 25.0% |
| !!! | AAAAATGGTAATGGATTTCA+AGG | - | chr6_4:76564028-76564047 | Msa0997300:intron | 25.0% |
| !!! | ATGTTTTGATGTTCTTTGTT+TGG | - | chr6_4:76564145-76564164 | Msa0997300:intron | 25.0% |
| !! | TTTTGTGACATTGAATTTGA+TGG | - | chr6_4:76564170-76564189 | Msa0997300:intron | 25.0% |
| !! | TTTTTGCTTATATTTCGTTC+CGG | - | chr6_4:76564345-76564364 | Msa0997300:intron | 25.0% |
| !!! | TAACTCTCTTTTGATAACTT+TGG | - | chr6_4:76564884-76564903 | Msa0997300:intron | 25.0% |
| ! | GGTAATTTATTAGAGAGAAA+GGG | - | chr6_4:76565208-76565227 | Msa0997300:CDS | 25.0% |
| ! | TGTATTAAGAAGAAGGTTTA+GGG | + | chr6_4:76565268-76565287 | None:intergenic | 25.0% |
| GAAGAGCTTAGGTTATATAT+TGG | + | chr6_4:76563336-76563355 | None:intergenic | 30.0% | |
| GTTAATGTTGTTGGGAAAAT+GGG | + | chr6_4:76563536-76563555 | None:intergenic | 30.0% | |
| TGTTAATGTTGTTGGGAAAA+TGG | + | chr6_4:76563537-76563556 | None:intergenic | 30.0% | |
| AAGGGATTGTTAATGTTGTT+GGG | + | chr6_4:76563544-76563563 | None:intergenic | 30.0% | |
| AAGATTGTTCTTGGAATGAA+GGG | + | chr6_4:76563562-76563581 | None:intergenic | 30.0% | |
| TAAGATTGTTCTTGGAATGA+AGG | + | chr6_4:76563563-76563582 | None:intergenic | 30.0% | |
| AGTTCATTTGAGAGAGATAA+AGG | + | chr6_4:76563599-76563618 | None:intergenic | 30.0% | |
| TTTGTAACAGAAAATGCATC+AGG | + | chr6_4:76563944-76563963 | None:intergenic | 30.0% | |
| ! | GCATTTTCTGTTACAAAAAG+TGG | - | chr6_4:76563947-76563966 | Msa0997300:intron | 30.0% |
| AGTAGGAAGAAAAATGGTAA+TGG | - | chr6_4:76564019-76564038 | Msa0997300:intron | 30.0% | |
| TTGCTGAAATTGATGAAGAT+TGG | - | chr6_4:76564196-76564215 | Msa0997300:intron | 30.0% | |
| TGCTGAAATTGATGAAGATT+GGG | - | chr6_4:76564197-76564216 | Msa0997300:intron | 30.0% | |
| ATCCAAACATCAATGTATGA+TGG | - | chr6_4:76564639-76564658 | Msa0997300:intron | 30.0% | |
| AACCATCATACATTGATGTT+TGG | + | chr6_4:76564644-76564663 | None:intergenic | 30.0% | |
| !!! | GAAGTGTTTTTTCAATGCTT+TGG | - | chr6_4:76564671-76564690 | Msa0997300:intron | 30.0% |
| TAGGTTCTGTAGTTTAGATA+TGG | - | chr6_4:76564818-76564837 | Msa0997300:intron | 30.0% | |
| CTACATAAACCTAGTCAATT+TGG | - | chr6_4:76565038-76565057 | Msa0997300:intron | 30.0% | |
| !! | ATGTTCTTCTTTTTAGTGCA+AGG | - | chr6_4:76565061-76565080 | Msa0997300:intron | 30.0% |
| !!! | TTTTTTCCTGCAAATGTAAG+TGG | - | chr6_4:76565186-76565205 | Msa0997300:intron | 30.0% |
| ! | TTTTTCCTGCAAATGTAAGT+GGG | - | chr6_4:76565187-76565206 | Msa0997300:intron | 30.0% |
| GGGTAATTTATTAGAGAGAA+AGG | - | chr6_4:76565207-76565226 | Msa0997300:CDS | 30.0% | |
| TTAGAGAGAAAGGGAATTTA+AGG | - | chr6_4:76565217-76565236 | Msa0997300:CDS | 30.0% | |
| TAGAGAGAAAGGGAATTTAA+GGG | - | chr6_4:76565218-76565237 | Msa0997300:CDS | 30.0% | |
| GTGTATTAAGAAGAAGGTTT+AGG | + | chr6_4:76565269-76565288 | None:intergenic | 30.0% | |
| CACACACTTAAACTTTGATT+AGG | - | chr6_4:76565344-76565363 | Msa0997300:CDS | 30.0% | |
| ATCTTCAAAACTCTACTTCA+AGG | + | chr6_4:76565389-76565408 | None:intergenic | 30.0% | |
| TGCTGTAACATTTACTCAAA+GGG | + | chr6_4:76565414-76565433 | None:intergenic | 30.0% | |
| TTGCTGTAACATTTACTCAA+AGG | + | chr6_4:76565415-76565434 | None:intergenic | 30.0% | |
| ATGATAGCATAAAAGAGGTT+TGG | + | chr6_4:76565472-76565491 | None:intergenic | 30.0% | |
| GAATGATGATAGCATAAAAG+AGG | + | chr6_4:76565477-76565496 | None:intergenic | 30.0% | |
| ! | ATCTTTGTTGTGAATCTTTG+TGG | + | chr6_4:76565584-76565603 | None:intergenic | 30.0% |
| AACAAAGATTGTGAGCTAAT+GGG | - | chr6_4:76565595-76565614 | Msa0997300:CDS | 30.0% | |
| AACAAAGAAAGAGACAAAGT+TGG | + | chr6_4:76565805-76565824 | None:intergenic | 30.0% | |
| GCTTAGGTTATATATTGGGT+AGG | + | chr6_4:76563331-76563350 | None:intergenic | 35.0% | |
| ! | TCTAAGATGATGAGAATGGA+AGG | + | chr6_4:76563388-76563407 | None:intergenic | 35.0% |
| ! | AAGGTCTAAGATGATGAGAA+TGG | + | chr6_4:76563392-76563411 | None:intergenic | 35.0% |
| ! | TAATGACATGATGGTGTTGA+AGG | + | chr6_4:76563411-76563430 | None:intergenic | 35.0% |
| ! | TGGAAGTGATAATGACATGA+TGG | + | chr6_4:76563420-76563439 | None:intergenic | 35.0% |
| AGGAAAAGGGTGATTAGATA+TGG | + | chr6_4:76563446-76563465 | None:intergenic | 35.0% | |
| GAAGAGAATGTAGAGGAAAA+GGG | + | chr6_4:76563459-76563478 | None:intergenic | 35.0% | |
| AGAAGAGAATGTAGAGGAAA+AGG | + | chr6_4:76563460-76563479 | None:intergenic | 35.0% | |
| TGTTGGGAAAATGGGATTAA+GGG | + | chr6_4:76563528-76563547 | None:intergenic | 35.0% | |
| TTGTTGGGAAAATGGGATTA+AGG | + | chr6_4:76563529-76563548 | None:intergenic | 35.0% | |
| GAAGGGATTGTTAATGTTGT+TGG | + | chr6_4:76563545-76563564 | None:intergenic | 35.0% | |
| CTCTCAAATGAACTCTTCAA+TGG | - | chr6_4:76563605-76563624 | Msa0997300:CDS | 35.0% | |
| GCATGTAGTTCATCAAAACA+TGG | - | chr6_4:76563638-76563657 | Msa0997300:CDS | 35.0% | |
| ATCATCATTTGACATGCCTT+TGG | - | chr6_4:76563781-76563800 | Msa0997300:intron | 35.0% | |
| ACCAAATCACAACTCTCATT+TGG | + | chr6_4:76563881-76563900 | None:intergenic | 35.0% | |
| AATGCATCAGGACAGTTAAA+AGG | + | chr6_4:76563932-76563951 | None:intergenic | 35.0% | |
| ACAAAAAGTGGAGAACTTGT+TGG | - | chr6_4:76563959-76563978 | Msa0997300:intron | 35.0% | |
| TGCTTGAGTAGGAAGAAAAA+TGG | - | chr6_4:76564013-76564032 | Msa0997300:intron | 35.0% | |
| GTGCTTGAATAGTCTCTATT+TGG | - | chr6_4:76564069-76564088 | Msa0997300:intron | 35.0% | |
| GATGAAGATTGGGTTATGTT+TGG | - | chr6_4:76564207-76564226 | Msa0997300:intron | 35.0% | |
| ! | AGTTAAATGGTTGATGTACG+TGG | - | chr6_4:76564303-76564322 | Msa0997300:intron | 35.0% |
| AAGCTATGCTAGAGAGTTTA+TGG | + | chr6_4:76564493-76564512 | None:intergenic | 35.0% | |
| TAGCTTAGTTGATCGCTTAT+AGG | + | chr6_4:76564616-76564635 | None:intergenic | 35.0% | |
| ATGACATTAAAGTGTACCAG+TGG | + | chr6_4:76564715-76564734 | None:intergenic | 35.0% | |
| ATGTCACTATCTTGGTACAA+CGG | - | chr6_4:76564787-76564806 | Msa0997300:intron | 35.0% | |
| TGGTACAACGGAATAACTTT+AGG | - | chr6_4:76564799-76564818 | Msa0997300:intron | 35.0% | |
| GAAGAACATCCAAATTGACT+AGG | + | chr6_4:76565050-76565069 | None:intergenic | 35.0% | |
| AATTACCCACTTACATTTGC+AGG | + | chr6_4:76565195-76565214 | None:intergenic | 35.0% | |
| ! | GAAGGTGTGTATTAAGAAGA+AGG | + | chr6_4:76565275-76565294 | None:intergenic | 35.0% |
| ATTCAAGCAAAGAAGAAGAC+AGG | - | chr6_4:76565557-76565576 | Msa0997300:CDS | 35.0% | |
| CAACAAAGATTGTGAGCTAA+TGG | - | chr6_4:76565594-76565613 | Msa0997300:CDS | 35.0% | |
| !! | GCTTTGTTGTTGAACAAAGA+TGG | - | chr6_4:76565682-76565701 | Msa0997300:CDS | 35.0% |
| ! | CTATTTAGAGTGCATGATTG+TGG | + | chr6_4:76565715-76565734 | None:intergenic | 35.0% |
| TCATGCACTCTAAATAGTGA+TGG | - | chr6_4:76565718-76565737 | Msa0997300:CDS | 35.0% | |
| ! | AAGAAAGAGACAAAGTTGGT+TGG | + | chr6_4:76565801-76565820 | None:intergenic | 35.0% |
| !! | TAATCCCTCTTTTGTTGCTT+AGG | - | chr6_4:76565931-76565950 | Msa0997300:five_prime_UTR | 35.0% |
| CATTCCTAAGCAACAAAAGA+GGG | + | chr6_4:76565938-76565957 | None:intergenic | 35.0% | |
| TGATGAGAATGGAAGGAAAG+TGG | + | chr6_4:76563381-76563400 | None:intergenic | 40.0% | |
| AGGGTGATTAGATATGGAAG+TGG | + | chr6_4:76563440-76563459 | None:intergenic | 40.0% | |
| AAGGGAAGAAGAGAATGTAG+AGG | + | chr6_4:76563466-76563485 | None:intergenic | 40.0% | |
| !! | AGGGTTGATGATGTTGAGTT+AGG | + | chr6_4:76563509-76563528 | None:intergenic | 40.0% |
| TATAACCATGCTGCAAGAAC+CGG | + | chr6_4:76563698-76563717 | None:intergenic | 40.0% | |
| CGATGATGAATGGTTTCCAA+GGG | + | chr6_4:76563741-76563760 | None:intergenic | 40.0% | |
| ACGATGATGAATGGTTTCCA+AGG | + | chr6_4:76563742-76563761 | None:intergenic | 40.0% | |
| ! | ACACATGTTTCTGAGTCATC+TGG | + | chr6_4:76563809-76563828 | None:intergenic | 40.0% |
| AGATGACTCAGAAACATGTG+TGG | - | chr6_4:76563808-76563827 | Msa0997300:intron | 40.0% | |
| AGAAACATGTGTGGATGGTT+TGG | - | chr6_4:76563817-76563836 | Msa0997300:intron | 40.0% | |
| ! | ATGTGTGGATGGTTTGGAAA+AGG | - | chr6_4:76563823-76563842 | Msa0997300:intron | 40.0% |
| !! | GAAAAGGCTTTGAAAGTGAG+AGG | - | chr6_4:76563839-76563858 | Msa0997300:intron | 40.0% |
| GCCAAATGAGAGTTGTGATT+TGG | - | chr6_4:76563877-76563896 | Msa0997300:intron | 40.0% | |
| !! | TTGGAGATGGAAGTGTTAGA+AGG | - | chr6_4:76563978-76563997 | Msa0997300:intron | 40.0% |
| !! | AGATGGAAGTGTTAGAAGGT+TGG | - | chr6_4:76563982-76564001 | Msa0997300:intron | 40.0% |
| TGGAGAAGAATTGCTTGAGT+AGG | - | chr6_4:76564002-76564021 | Msa0997300:intron | 40.0% | |
| !! | GGTAATGGATTTCAAGGTCT+TGG | - | chr6_4:76564034-76564053 | Msa0997300:intron | 40.0% |
| ! | AATGGATTTCAAGGTCTTGG+AGG | - | chr6_4:76564037-76564056 | Msa0997300:intron | 40.0% |
| TTCCGGAGTAAGTGTTTCAT+GGG | - | chr6_4:76564362-76564381 | Msa0997300:intron | 40.0% | |
| CACATGCAATGTCACTATCT+TGG | - | chr6_4:76564779-76564798 | Msa0997300:intron | 40.0% | |
| TCAGATGAATCAACAGCTAG+AGG | + | chr6_4:76565748-76565767 | None:intergenic | 40.0% | |
| ! | AGACAAAGTTGGTTGGAGTT+TGG | + | chr6_4:76565794-76565813 | None:intergenic | 40.0% |
| GCATTCCTAAGCAACAAAAG+AGG | + | chr6_4:76565939-76565958 | None:intergenic | 40.0% | |
| GAGTGAGACTCATGTAGGAA+GGG | + | chr6_4:76563484-76563503 | None:intergenic | 45.0% | |
| TGAGTGAGACTCATGTAGGA+AGG | + | chr6_4:76563485-76563504 | None:intergenic | 45.0% | |
| AGGATGAGTGAGACTCATGT+AGG | + | chr6_4:76563489-76563508 | None:intergenic | 45.0% | |
| ATGACGACGACGATGATGAA+TGG | + | chr6_4:76563751-76563770 | None:intergenic | 45.0% | |
| TCTGAGTCATCTGGTACCAA+AGG | + | chr6_4:76563800-76563819 | None:intergenic | 45.0% | |
| GACTCAGAAACATGTGTGGA+TGG | - | chr6_4:76563812-76563831 | Msa0997300:intron | 45.0% | |
| !! | AGTGGAGAACTTGTTGGAGA+TGG | - | chr6_4:76563965-76563984 | Msa0997300:intron | 45.0% |
| GTTCCGGAGTAAGTGTTTCA+TGG | - | chr6_4:76564361-76564380 | Msa0997300:intron | 45.0% | |
| AGCCCATGAAACACTTACTC+CGG | + | chr6_4:76564367-76564386 | None:intergenic | 45.0% | |
| CTGTGTAGTTCATAGACCAC+TGG | - | chr6_4:76564696-76564715 | Msa0997300:intron | 45.0% | |
| AAGGTGTAGTCCGCTAATAC+GGG | + | chr6_4:76565308-76565327 | None:intergenic | 45.0% | |
| ! | GAAGGTGTAGTCCGCTAATA+CGG | + | chr6_4:76565309-76565328 | None:intergenic | 45.0% |
| !! | GTATTAGCGGACTACACCTT+CGG | - | chr6_4:76565308-76565327 | Msa0997300:CDS | 45.0% |
| GTGACAAAATGTGTGTCCGA+AGG | + | chr6_4:76565327-76565346 | None:intergenic | 45.0% | |
| !! | GTGAGCTAATGGGTTTGACA+TGG | - | chr6_4:76565605-76565624 | Msa0997300:CDS | 45.0% |
| CATGGCTTCTGTCGAAGAAT+CGG | - | chr6_4:76565623-76565642 | Msa0997300:CDS | 45.0% | |
| TCGGACGGCATATATTCACA+CGG | - | chr6_4:76565642-76565661 | Msa0997300:CDS | 45.0% | |
| TGAATGGTTTCCAAGGGCAG+TGG | + | chr6_4:76563735-76563754 | None:intergenic | 50.0% | |
| !! | AATACGGGTTGGGACAACGA+AGG | + | chr6_4:76565293-76565312 | None:intergenic | 50.0% |
| GTTGTCCCAACCCGTATTAG+CGG | - | chr6_4:76565295-76565314 | Msa0997300:CDS | 50.0% | |
| GTAGTCCGCTAATACGGGTT+GGG | + | chr6_4:76565303-76565322 | None:intergenic | 50.0% | |
| TGTAGTCCGCTAATACGGGT+TGG | + | chr6_4:76565304-76565323 | None:intergenic | 50.0% | |
| GCTTCTGTCGAAGAATCGGA+CGG | - | chr6_4:76565627-76565646 | Msa0997300:CDS | 50.0% | |
| CTGCAAGAACCGGACAGCAT+CGG | + | chr6_4:76563688-76563707 | None:intergenic | 55.0% | |
| TCATACTCCTCCACTGCCCT+TGG | - | chr6_4:76563722-76563741 | Msa0997300:CDS | 55.0% | |
| ATGGTTTCCAAGGGCAGTGG+AGG | + | chr6_4:76563732-76563751 | None:intergenic | 55.0% | |
| !! | GAACCGGACAGCATCGGCTA+CGG | + | chr6_4:76563682-76563701 | None:intergenic | 60.0% |
| GCTGTCCGGTTCTTGCAGCA+TGG | - | chr6_4:76563690-76563709 | Msa0997300:CDS | 60.0% | |
| CGACCGTAGCCGATGCTGTC+CGG | - | chr6_4:76563676-76563695 | Msa0997300:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_4 | gene | 76563290 | 76565994 | 76563290 | ID=Msa0997300;Name=Msa0997300 |
| chr6_4 | mRNA | 76563290 | 76565994 | 76563290 | ID=Msa0997300-mRNA-1;Parent=Msa0997300;Name=Msa0997300-mRNA-1;_AED=0.01;_eAED=0.01;_QI=132|1|1|1|1|1|2|118|335 |
| chr6_4 | exon | 76563290 | 76563746 | 76563290 | ID=Msa0997300-mRNA-1:exon:14411;Parent=Msa0997300-mRNA-1 |
| chr6_4 | exon | 76565194 | 76565994 | 76565194 | ID=Msa0997300-mRNA-1:exon:14410;Parent=Msa0997300-mRNA-1 |
| chr6_4 | five_prime_UTR | 76565863 | 76565994 | 76565863 | ID=Msa0997300-mRNA-1:five_prime_utr;Parent=Msa0997300-mRNA-1 |
| chr6_4 | CDS | 76565194 | 76565862 | 76565194 | ID=Msa0997300-mRNA-1:cds;Parent=Msa0997300-mRNA-1 |
| chr6_4 | CDS | 76563408 | 76563746 | 76563408 | ID=Msa0997300-mRNA-1:cds;Parent=Msa0997300-mRNA-1 |
| chr6_4 | three_prime_UTR | 76563290 | 76563407 | 76563290 | ID=Msa0997300-mRNA-1:three_prime_utr;Parent=Msa0997300-mRNA-1 |
| Gene Sequence |
| Protein sequence |
