AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0815340


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0815340 MtrunA17_Chr5g0433491 96.667 210 5 2 6 213 1 210 1.73e-145 403
Msa0815340 MtrunA17_Chr3g0109681 62.212 217 72 5 6 213 2 217 1.06e-88 260
Msa0815340 MtrunA17_Chr7g0231191 34.682 173 109 3 27 197 6 176 1.35e-34 121
Msa0815340 MtrunA17_Chr2g0290281 29.885 174 112 4 39 203 8 180 1.92e-19 82.0
Msa0815340 MtrunA17_Chr4g0042551 33.913 115 74 1 73 185 96 210 1.64e-13 67.0
Msa0815340 MtrunA17_Chr7g0217691 27.778 180 120 4 16 186 2 180 7.96e-13 64.3
Msa0815340 MtrunA17_Chr4g0021111 27.517 149 97 4 40 183 6 148 1.23e-11 60.8
Msa0815340 MtrunA17_Chr5g0417761 26.738 187 121 3 8 186 2 180 2.43e-11 60.5
Msa0815340 MtrunA17_Chr7g0251531 23.030 165 120 2 34 191 22 186 3.47e-11 60.1
Msa0815340 MtrunA17_Chr4g0072591 27.907 129 84 1 75 194 46 174 5.24e-11 59.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0815340 AT1G17200.1 54.808 208 86 5 6 211 1 202 1.40e-71 216
Msa0815340 AT3G14380.1 54.839 155 69 1 43 196 24 178 1.22e-49 160
Msa0815340 AT1G17200.2 55.046 109 47 2 104 211 1 108 7.18e-35 120
Msa0815340 AT5G54980.1 34.337 166 104 3 39 201 29 192 1.49e-22 90.9
Msa0815340 AT4G16442.1 30.539 167 107 3 39 196 8 174 5.92e-16 73.2
Msa0815340 AT2G35760.1 28.161 174 116 3 39 203 27 200 2.44e-14 69.3
Msa0815340 AT1G03700.1 28.105 153 99 4 46 193 13 159 8.10e-13 64.3
Msa0815340 AT4G15620.1 24.737 190 133 4 1 189 9 189 3.13e-11 60.5
Msa0815340 AT1G14160.1 33.613 119 77 1 73 189 88 206 3.35e-11 60.8
Msa0815340 AT2G27370.1 30.769 117 79 1 75 189 101 217 8.63e-11 59.7

Find 60 sgRNAs with CRISPR-Local

Find 156 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATTCTGATCTTGGTGCTTTC+AGG 0.132194 5_3:-48879327 Msa0815340:intron
TTTCACTCATATCCTCTTAT+AGG 0.157418 5_3:-48877205 Msa0815340:CDS
ATCAAAACTATAAATCTAAA+AGG 0.252172 5_3:+48877059 None:intergenic
GTTCTATACCTTGCTGAATA+TGG 0.284110 5_3:-48877338 Msa0815340:CDS
TCTGTTGCCTATTCTGATCT+TGG 0.296237 5_3:-48879337 Msa0815340:CDS
TACAAGATCTTCAATTGAAA+TGG 0.304475 5_3:-48879506 Msa0815340:CDS
TTGTTATAACTATCTTATAT+TGG 0.311251 5_3:-48876919 Msa0815340:three_prime_UTR
ACTAATGCACAATAATAATA+TGG 0.315066 5_3:-48879554 Msa0815340:exon
ATAAAGGTACAAATTGAGTT+TGG 0.324980 5_3:+48879612 None:intergenic
AAAGGAAATGACCAACGATT+AGG 0.339951 5_3:+48877077 None:intergenic
TTCAACTATGCCTAAGGCTT+GGG 0.359587 5_3:-48878466 Msa0815340:CDS
TGGGAGTTGTTGACTTGTGC+TGG 0.377358 5_3:+48877161 None:intergenic
AGTTCAGCTTGTGGATCTTT+CGG 0.384816 5_3:-48877296 Msa0815340:CDS
ATTAGTATATAGCTACAAAT+TGG 0.386782 5_3:+48879571 None:intergenic
ATTGGCATTGCTGCTTTCAA+TGG 0.396424 5_3:-48877131 Msa0815340:CDS
AAGGAAATGACCAACGATTA+GGG 0.397305 5_3:+48877078 None:intergenic
GCTGTTACACATAAACAAAT+AGG 0.414973 5_3:+48879403 None:intergenic
AATTCTGAGGAAAATGAGTA+TGG 0.430525 5_3:-48879361 Msa0815340:CDS
CTTCAACTATGCCTAAGGCT+TGG 0.448431 5_3:-48878467 Msa0815340:CDS
CTTGCTAAATAGCCTATAAG+AGG 0.450822 5_3:+48877193 None:intergenic
AGCTTCATTGCTACGTATTG+TGG 0.458863 5_3:-48879446 Msa0815340:CDS
ACAAGATCTTCAATTGAAAT+GGG 0.465265 5_3:-48879505 Msa0815340:CDS
AGGTACAAATTGAGTTTGGT+TGG 0.466935 5_3:+48879616 None:intergenic
GTAGTTGATGAGGAATTTGA+AGG 0.468758 5_3:-48879475 Msa0815340:CDS
GAAAGCACCAAGATCAGAAT+AGG 0.484914 5_3:+48879330 None:intergenic
CATGTACTTTGTTATCCACC+AGG 0.504588 5_3:+48876955 None:intergenic
ACCTACATAATCCTAGCTGC+TGG 0.505252 5_3:-48877377 Msa0815340:CDS
CCGTCCTTCAACTATGCCTA+AGG 0.510562 5_3:-48878472 Msa0815340:CDS
CTTAGGCATAGTTGAAGGAC+GGG 0.514097 5_3:+48878473 None:intergenic
AGTTATCACATTTATTGCTG+TGG 0.518652 5_3:-48877243 Msa0815340:CDS
GAGTGAGTAATAATATTGTA+AGG 0.546708 5_3:+48877104 None:intergenic
ATTCATGTACACATCACAAA+GGG 0.551225 5_3:+48876986 None:intergenic
CATGCCAATGGTATTTGTGC+AGG 0.554512 5_3:-48878531 Msa0815340:CDS
AGCAATGCCAATGTCCTTGT+GGG 0.557112 5_3:+48877142 None:intergenic
GGGAAATTCAGTAGTTGATG+AGG 0.565988 5_3:-48879485 Msa0815340:CDS
GAATATGGAGTCCCTACTGC+AGG 0.568100 5_3:-48877323 Msa0815340:CDS
AACAACTCCCACAAGGACAT+TGG 0.574862 5_3:-48877149 Msa0815340:CDS
GCTGAACTCCATCCTGCAGT+AGG 0.577795 5_3:+48877311 None:intergenic
CAGCAATGCCAATGTCCTTG+TGG 0.579924 5_3:+48877141 None:intergenic
TCCAGCAGCTAGGATTATGT+AGG 0.582929 5_3:+48877376 None:intergenic
CTGAACTCCATCCTGCAGTA+GGG 0.588006 5_3:+48877312 None:intergenic
CATTATGCTGAAGAATTCTG+AGG 0.589250 5_3:-48879374 Msa0815340:CDS
CAAGCCTTAGGCATAGTTGA+AGG 0.590779 5_3:+48878468 None:intergenic
CACAATAATAATATGGACAA+GGG 0.592027 5_3:-48879547 Msa0815340:CDS
AGGTATTTGGTGCATGCCAA+TGG 0.592552 5_3:-48878543 Msa0815340:CDS
TTAATACAGCTCCAGCAGCT+AGG 0.598816 5_3:+48877366 None:intergenic
ATATCCTGCACAAATACCAT+TGG 0.600027 5_3:+48878527 None:intergenic
CCTTAGGCATAGTTGAAGGA+CGG 0.602862 5_3:+48878472 None:intergenic
GCAGGATGGAGTTCAGCTTG+TGG 0.603477 5_3:-48877305 Msa0815340:CDS
CTCACTCTGTCCCTAATCGT+TGG 0.614120 5_3:-48877088 Msa0815340:three_prime_UTR
ATGGAGTCCCTACTGCAGGA+TGG 0.616514 5_3:-48877319 Msa0815340:CDS
GTACATGAATAATTATATCC+TGG 0.624732 5_3:-48876973 Msa0815340:three_prime_UTR
TATTCATGTACACATCACAA+AGG 0.633588 5_3:+48876985 None:intergenic
GCACAATAATAATATGGACA+AGG 0.635127 5_3:-48879548 Msa0815340:CDS
CATGAATAATTATATCCTGG+TGG 0.635470 5_3:-48876970 Msa0815340:three_prime_UTR
AATATAAGATAGTTATAACA+AGG 0.663165 5_3:+48876921 None:intergenic
TAGGGACTCCATATTCAGCA+AGG 0.672967 5_3:+48877330 None:intergenic
ACAAGTCAACAACTCCCACA+AGG 0.673400 5_3:-48877156 Msa0815340:CDS
TGCTGGAGCTGTATTAACAG+AGG 0.687633 5_3:-48877360 Msa0815340:CDS
TTAGGCATAGTTGAAGGACG+GGG 0.688488 5_3:+48878474 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTAAACAAATTTTATCTA+GGG + chr5_3:48877629-48877648 None:intergenic 10.0%
!!! ATTTTAAACAAATTTTATCT+AGG + chr5_3:48877630-48877649 None:intergenic 10.0%
!!! TCTAAAATATTAATTTTAGT+AGG - chr5_3:48878509-48878528 Msa0815340:CDS 10.0%
!! CAAAAGTAAATAAAAATTAT+AGG - chr5_3:48878838-48878857 Msa0815340:intron 10.0%
!! AAAGTAAATAAAAATTATAG+GGG - chr5_3:48878840-48878859 Msa0815340:intron 10.0%
!!! ATTTTTACATCAAAATTTAA+AGG + chr5_3:48879047-48879066 None:intergenic 10.0%
!!! ATTTTTTGTGGAAAAAATAA+AGG + chr5_3:48876939-48876958 None:intergenic 15.0%
!! AGCAAAAAAACTATAAAATT+TGG + chr5_3:48877246-48877265 None:intergenic 15.0%
!! AAATAATATCCTTATGTTTA+TGG + chr5_3:48877284-48877303 None:intergenic 15.0%
!!! GAATTTGTTTTTTTATTGAT+AGG - chr5_3:48877509-48877528 Msa0815340:intron 15.0%
!!! TTTAAACAAATTTTATCTAG+GGG + chr5_3:48877628-48877647 None:intergenic 15.0%
!!! GAATTATATTTTAAGTCAAT+AGG - chr5_3:48877742-48877761 Msa0815340:intron 15.0%
!! CTGTTAAATATTCATATAAA+AGG - chr5_3:48878773-48878792 Msa0815340:intron 15.0%
!! AAGTAAATAAAAATTATAGG+GGG - chr5_3:48878841-48878860 Msa0815340:intron 15.0%
!! TAAAAAATCCAAATATTACA+GGG - chr5_3:48878996-48879015 Msa0815340:intron 15.0%
!! ATCAAAACTATAAATCTAAA+AGG + chr5_3:48879476-48879495 None:intergenic 15.0%
!! AATATAAGATAGTTATAACA+AGG + chr5_3:48879614-48879633 None:intergenic 15.0%
!!! TACAAATTGGTTATTTTTTG+TGG + chr5_3:48876951-48876970 None:intergenic 20.0%
!! ATTAGTATATAGCTACAAAT+TGG + chr5_3:48876964-48876983 None:intergenic 20.0%
!! ACTAATGCACAATAATAATA+TGG - chr5_3:48876978-48876997 Msa0815340:three_prime_UTR 20.0%
!!! TTTTTTTGCTCTACTTAAAT+TGG - chr5_3:48877256-48877275 Msa0815340:CDS 20.0%
!!! TATTTAATTGTTTTGAGCTA+AGG - chr5_3:48877299-48877318 Msa0815340:CDS 20.0%
!!! TAACCTTTGAAATAATTTGA+AGG - chr5_3:48877432-48877451 Msa0815340:intron 20.0%
!! TTTCAAAGAACTAATTTGAT+TGG - chr5_3:48877465-48877484 Msa0815340:intron 20.0%
!!! TTAAACAAATTTTATCTAGG+GGG + chr5_3:48877627-48877646 None:intergenic 20.0%
!! TATCTAAGAATTAACCATAT+TGG - chr5_3:48878688-48878707 Msa0815340:intron 20.0%
!! TTTCTTATTCATTACCAATA+TGG + chr5_3:48878705-48878724 None:intergenic 20.0%
!! GAATAAGAAAAATACTCAAA+AGG - chr5_3:48878715-48878734 Msa0815340:intron 20.0%
!! AAGGATAGAAAATAATTATC+AGG - chr5_3:48878734-48878753 Msa0815340:intron 20.0%
!! TAACATTCAAATTGAAAATG+AGG - chr5_3:48878867-48878886 Msa0815340:intron 20.0%
!! AACATTCAAATTGAAAATGA+GGG - chr5_3:48878868-48878887 Msa0815340:intron 20.0%
!! GTAAAAAATCCAAATATTAC+AGG - chr5_3:48878995-48879014 Msa0815340:intron 20.0%
!! ATAAAGGTACAAATTGAGTT+TGG + chr5_3:48876923-48876942 None:intergenic 25.0%
! CACAATAATAATATGGACAA+GGG - chr5_3:48876985-48877004 Msa0815340:three_prime_UTR 25.0%
! TACAAGATCTTCAATTGAAA+TGG - chr5_3:48877026-48877045 Msa0815340:three_prime_UTR 25.0%
! ACAAGATCTTCAATTGAAAT+GGG - chr5_3:48877027-48877046 Msa0815340:three_prime_UTR 25.0%
! AAATTGGATCCATAAACATA+AGG - chr5_3:48877272-48877291 Msa0815340:CDS 25.0%
! TCTCCTTCAAATTATTTCAA+AGG + chr5_3:48877438-48877457 None:intergenic 25.0%
! AGAAAACAAAATAACTAGCT+AGG - chr5_3:48877864-48877883 Msa0815340:intron 25.0%
!! GTTTGTATTTTGCATATTGT+AGG - chr5_3:48877969-48877988 Msa0815340:intron 25.0%
!! TTTTGCATATTGTAGGTATT+TGG - chr5_3:48877976-48877995 Msa0815340:intron 25.0%
!!! GTATTTTAATCGGTTTGTAT+AGG - chr5_3:48878350-48878369 Msa0815340:intron 25.0%
!!! AATTTCCATCTTACTTTTTC+TGG - chr5_3:48878400-48878419 Msa0815340:intron 25.0%
! ACAACATTACCAATAATGTT+TGG - chr5_3:48878537-48878556 Msa0815340:CDS 25.0%
! ATATTGAATGATTGCATGAA+GGG + chr5_3:48878574-48878593 None:intergenic 25.0%
! TTCTTAGATACCTTAAAGTT+TGG + chr5_3:48878678-48878697 None:intergenic 25.0%
! AGGGTTCTATAAATATTCTA+GGG - chr5_3:48878887-48878906 Msa0815340:intron 25.0%
! ACATCAAAATTTAAAGGTCT+GGG + chr5_3:48879041-48879060 None:intergenic 25.0%
! TACATCAAAATTTAAAGGTC+TGG + chr5_3:48879042-48879061 None:intergenic 25.0%
! TATAGGATATCAAACACAAA+TGG + chr5_3:48879128-48879147 None:intergenic 25.0%
! ATTTGTGTTTGATATCCTAT+AGG - chr5_3:48879127-48879146 Msa0815340:intron 25.0%
! GAGTGAGTAATAATATTGTA+AGG + chr5_3:48879431-48879450 None:intergenic 25.0%
! GTACATGAATAATTATATCC+TGG - chr5_3:48879559-48879578 Msa0815340:exon 25.0%
GCACAATAATAATATGGACA+AGG - chr5_3:48876984-48877003 Msa0815340:three_prime_UTR 30.0%
GCTGTTACACATAAACAAAT+AGG + chr5_3:48877132-48877151 None:intergenic 30.0%
! AATTCTGAGGAAAATGAGTA+TGG - chr5_3:48877171-48877190 Msa0815340:CDS 30.0%
!!! ATTGTTTTGAGCTAAGGTTT+TGG - chr5_3:48877305-48877324 Msa0815340:CDS 30.0%
TTGACAAATGAAAACTCACT+TGG - chr5_3:48877372-48877391 Msa0815340:CDS 30.0%
GAGCAAGTAAAACAATAGTT+AGG - chr5_3:48877839-48877858 Msa0815340:intron 30.0%
ACTGGAATATATTTCATGTC+TGG + chr5_3:48877923-48877942 None:intergenic 30.0%
! AAGATTGGTTCATGATTAAC+TGG + chr5_3:48877941-48877960 None:intergenic 30.0%
ATCATGAACCAATCTTATTC+TGG - chr5_3:48877945-48877964 Msa0815340:intron 30.0%
TACAAACACCAGAATAAGAT+TGG + chr5_3:48877956-48877975 None:intergenic 30.0%
! TTTCAAGTAAGATATTGACC+TGG + chr5_3:48878108-48878127 None:intergenic 30.0%
TCATTCCAGAAAAAGTAAGA+TGG + chr5_3:48878408-48878427 None:intergenic 30.0%
!! AATGGAAGTACTTGTCAATA+TGG + chr5_3:48878453-48878472 None:intergenic 30.0%
TACTTCCATTTAATGTGTGA+TGG - chr5_3:48878463-48878482 Msa0815340:CDS 30.0%
CAATACCATCACACATTAAA+TGG + chr5_3:48878471-48878490 None:intergenic 30.0%
GATATTGAATGATTGCATGA+AGG + chr5_3:48878575-48878594 None:intergenic 30.0%
TGAAATCCAACCAAACTTTA+AGG - chr5_3:48878665-48878684 Msa0815340:intron 30.0%
TAGATACCTTAAAGTTTGGT+TGG + chr5_3:48878674-48878693 None:intergenic 30.0%
GAGGGTTCTATAAATATTCT+AGG - chr5_3:48878886-48878905 Msa0815340:intron 30.0%
GGGTTCTATAAATATTCTAG+GGG - chr5_3:48878888-48878907 Msa0815340:intron 30.0%
TTCTAGCATTCATACTGAAT+GGG - chr5_3:48878962-48878981 Msa0815340:intron 30.0%
AGTTATCACATTTATTGCTG+TGG - chr5_3:48879289-48879308 Msa0815340:intron 30.0%
TTTCACTCATATCCTCTTAT+AGG - chr5_3:48879327-48879346 Msa0815340:intron 30.0%
ATTCATGTACACATCACAAA+GGG + chr5_3:48879549-48879568 None:intergenic 30.0%
TATTCATGTACACATCACAA+AGG + chr5_3:48879550-48879569 None:intergenic 30.0%
CATGAATAATTATATCCTGG+TGG - chr5_3:48879562-48879581 Msa0815340:exon 30.0%
!! GTAGTTGATGAGGAATTTGA+AGG - chr5_3:48877057-48877076 Msa0815340:three_prime_UTR 35.0%
CATTATGCTGAAGAATTCTG+AGG - chr5_3:48877158-48877177 Msa0815340:CDS 35.0%
! CTCTATGTTTCTTTGATGGT+TGG + chr5_3:48877822-48877841 None:intergenic 35.0%
CTTGCTCTATGTTTCTTTGA+TGG + chr5_3:48877826-48877845 None:intergenic 35.0%
GGAATATATTTCATGTCTGG+TGG + chr5_3:48877920-48877939 None:intergenic 35.0%
ATATCCTGCACAAATACCAT+TGG + chr5_3:48878008-48878027 None:intergenic 35.0%
!!! GAGAGTGAACGTTTTTTGTT+GGG + chr5_3:48878142-48878161 None:intergenic 35.0%
!!! TGAGAGTGAACGTTTTTTGT+TGG + chr5_3:48878143-48878162 None:intergenic 35.0%
! TTAAGTCACGTTTGCTACAT+TGG + chr5_3:48878287-48878306 None:intergenic 35.0%
!!! TAGGAGTGAGTGTTTTTAGT+TGG - chr5_3:48878369-48878388 Msa0815340:intron 35.0%
!!! CTTACTTTTTCTGGAATGAG+AGG - chr5_3:48878409-48878428 Msa0815340:intron 35.0%
CATGCTCAACCAAACATTAT+TGG + chr5_3:48878549-48878568 None:intergenic 35.0%
! GTTGGATTTCAGTAACTTGT+TGG + chr5_3:48878656-48878675 None:intergenic 35.0%
GTTCTAGCATTCATACTGAA+TGG - chr5_3:48878961-48878980 Msa0815340:intron 35.0%
ATTCATACTGAATGGGTAGA+AGG - chr5_3:48878969-48878988 Msa0815340:intron 35.0%
TTCATACTGAATGGGTAGAA+GGG - chr5_3:48878970-48878989 Msa0815340:intron 35.0%
TTATGTAGGTTTGCACCTAT+AGG + chr5_3:48879145-48879164 None:intergenic 35.0%
GTTCTATACCTTGCTGAATA+TGG - chr5_3:48879194-48879213 Msa0815340:intron 35.0%
CTTGCTAAATAGCCTATAAG+AGG + chr5_3:48879342-48879361 None:intergenic 35.0%
AAGGAAATGACCAACGATTA+GGG + chr5_3:48879457-48879476 None:intergenic 35.0%
AAAGGAAATGACCAACGATT+AGG + chr5_3:48879458-48879477 None:intergenic 35.0%
! GGGAAATTCAGTAGTTGATG+AGG - chr5_3:48877047-48877066 Msa0815340:three_prime_UTR 40.0%
AGCTTCATTGCTACGTATTG+TGG - chr5_3:48877086-48877105 Msa0815340:three_prime_UTR 40.0%
TCTGTTGCCTATTCTGATCT+TGG - chr5_3:48877195-48877214 Msa0815340:CDS 40.0%
!! GAAAGCACCAAGATCAGAAT+AGG + chr5_3:48877205-48877224 None:intergenic 40.0%
!! ATTCTGATCTTGGTGCTTTC+AGG - chr5_3:48877205-48877224 Msa0815340:CDS 40.0%
CTCACTTGGTCATTTGATAG+AGG - chr5_3:48877386-48877405 Msa0815340:CDS 40.0%
ACTTGGTCATTTGATAGAGG+AGG - chr5_3:48877389-48877408 Msa0815340:intron 40.0%
CTTGGTCATTTGATAGAGGA+GGG - chr5_3:48877390-48877409 Msa0815340:intron 40.0%
!! GGTACTGATGTCAAGCTTTA+AGG + chr5_3:48877606-48877625 None:intergenic 40.0%
TTCAACTATGCCTAAGGCTT+GGG - chr5_3:48878066-48878085 Msa0815340:intron 40.0%
AAAAAGAAAGCCCAAGCCTT+AGG + chr5_3:48878079-48878098 None:intergenic 40.0%
! AACTTGTGTGCGGAATGTTT+TGG + chr5_3:48878176-48878195 None:intergenic 40.0%
!! AACGTGAGTTAACTTGTGTG+CGG + chr5_3:48878186-48878205 None:intergenic 40.0%
CACACAAGTTAACTCACGTT+CGG - chr5_3:48878186-48878205 Msa0815340:intron 40.0%
TAGCGTGAATTAACTCGTGT+AGG + chr5_3:48878227-48878246 None:intergenic 40.0%
TACACGAGTTAATTCACGCT+AGG - chr5_3:48878226-48878245 Msa0815340:intron 40.0%
AAACGTGACTTAAGTCACGT+TGG - chr5_3:48878294-48878313 Msa0815340:intron 40.0%
!!! TCACGTGGGGGTATTTTAAT+CGG - chr5_3:48878340-48878359 Msa0815340:intron 40.0%
TCCAAATATTACAGGGTAGC+TGG - chr5_3:48879003-48879022 Msa0815340:intron 40.0%
ACCAGCTACCCTGTAATATT+TGG + chr5_3:48879007-48879026 None:intergenic 40.0%
AGTTCAGCTTGTGGATCTTT+CGG - chr5_3:48879236-48879255 Msa0815340:intron 40.0%
!! ATTGGCATTGCTGCTTTCAA+TGG - chr5_3:48879401-48879420 Msa0815340:CDS 40.0%
! CATGTACTTTGTTATCCACC+AGG + chr5_3:48879580-48879599 None:intergenic 40.0%
!! AGGTATTTGGTGCATGCCAA+TGG - chr5_3:48877989-48878008 Msa0815340:intron 45.0%
CATGCCAATGGTATTTGTGC+AGG - chr5_3:48878001-48878020 Msa0815340:intron 45.0%
TTAGGCATAGTTGAAGGACG+GGG + chr5_3:48878061-48878080 None:intergenic 45.0%
CTTAGGCATAGTTGAAGGAC+GGG + chr5_3:48878062-48878081 None:intergenic 45.0%
CCTTAGGCATAGTTGAAGGA+CGG + chr5_3:48878063-48878082 None:intergenic 45.0%
CAAGCCTTAGGCATAGTTGA+AGG + chr5_3:48878067-48878086 None:intergenic 45.0%
CTTCAACTATGCCTAAGGCT+TGG - chr5_3:48878065-48878084 Msa0815340:intron 45.0%
! GGCTTTCTTTTTGCTTGACC+AGG - chr5_3:48878087-48878106 Msa0815340:intron 45.0%
! TCAAGTGAGTTGACTCACGT+AGG + chr5_3:48878258-48878277 None:intergenic 45.0%
ACCTACATAATCCTAGCTGC+TGG - chr5_3:48879155-48879174 Msa0815340:intron 45.0%
TCCAGCAGCTAGGATTATGT+AGG + chr5_3:48879159-48879178 None:intergenic 45.0%
TTAATACAGCTCCAGCAGCT+AGG + chr5_3:48879169-48879188 None:intergenic 45.0%
TGCTGGAGCTGTATTAACAG+AGG - chr5_3:48879172-48879191 Msa0815340:intron 45.0%
TAGGGACTCCATATTCAGCA+AGG + chr5_3:48879205-48879224 None:intergenic 45.0%
ACAAGTCAACAACTCCCACA+AGG - chr5_3:48879376-48879395 Msa0815340:CDS 45.0%
AACAACTCCCACAAGGACAT+TGG - chr5_3:48879383-48879402 Msa0815340:CDS 45.0%
AGCAATGCCAATGTCCTTGT+GGG + chr5_3:48879393-48879412 None:intergenic 45.0%
!! AAAAGTAAATAAAAATTATA+GGG - chr5_3:48878839-48878858 Msa0815340:intron 5.0%
! GACACAAGAAGTGCAAGACG+AGG - chr5_3:48877764-48877783 Msa0815340:intron 50.0%
CCGTCCTTCAACTATGCCTA+AGG - chr5_3:48878060-48878079 Msa0815340:intron 50.0%
CTGCGTGACTTAAGTCACGT+GGG - chr5_3:48878326-48878345 Msa0815340:intron 50.0%
TGCGTGACTTAAGTCACGTG+GGG - chr5_3:48878327-48878346 Msa0815340:intron 50.0%
GAATATGGAGTCCCTACTGC+AGG - chr5_3:48879209-48879228 Msa0815340:intron 50.0%
CTGAACTCCATCCTGCAGTA+GGG + chr5_3:48879223-48879242 None:intergenic 50.0%
!! TGGGAGTTGTTGACTTGTGC+TGG + chr5_3:48879374-48879393 None:intergenic 50.0%
CAGCAATGCCAATGTCCTTG+TGG + chr5_3:48879394-48879413 None:intergenic 50.0%
CTCACTCTGTCCCTAATCGT+TGG - chr5_3:48879444-48879463 Msa0815340:CDS 50.0%
CCACGTGACTTAAGTCACGC+AGG + chr5_3:48878328-48878347 None:intergenic 55.0%
CCTGCGTGACTTAAGTCACG+TGG - chr5_3:48878325-48878344 Msa0815340:intron 55.0%
GCGTGACTTAAGTCACGTGG+GGG - chr5_3:48878328-48878347 Msa0815340:intron 55.0%
ATGGAGTCCCTACTGCAGGA+TGG - chr5_3:48879213-48879232 Msa0815340:intron 55.0%
GCTGAACTCCATCCTGCAGT+AGG + chr5_3:48879224-48879243 None:intergenic 55.0%
GCAGGATGGAGTTCAGCTTG+TGG - chr5_3:48879227-48879246 Msa0815340:intron 55.0%
Chromosome Type Strat End Strand Name
chr5_3 gene 48876919 48879635 48876919 ID=Msa0815340;Name=Msa0815340
chr5_3 mRNA 48876919 48879635 48876919 ID=Msa0815340-mRNA-1;Parent=Msa0815340;Name=Msa0815340-mRNA-1;_AED=0.00;_eAED=0.00;_QI=63|1|1|1|1|1|3|208|213
chr5_3 exon 48876919 48877405 48876919 ID=Msa0815340-mRNA-1:exon:14656;Parent=Msa0815340-mRNA-1
chr5_3 exon 48878446 48878563 48878446 ID=Msa0815340-mRNA-1:exon:14655;Parent=Msa0815340-mRNA-1
chr5_3 exon 48879328 48879635 48879328 ID=Msa0815340-mRNA-1:exon:14654;Parent=Msa0815340-mRNA-1
chr5_3 five_prime_UTR 48879573 48879635 48879573 ID=Msa0815340-mRNA-1:five_prime_utr;Parent=Msa0815340-mRNA-1
chr5_3 CDS 48879328 48879572 48879328 ID=Msa0815340-mRNA-1:cds;Parent=Msa0815340-mRNA-1
chr5_3 CDS 48878446 48878563 48878446 ID=Msa0815340-mRNA-1:cds;Parent=Msa0815340-mRNA-1
chr5_3 CDS 48877127 48877405 48877127 ID=Msa0815340-mRNA-1:cds;Parent=Msa0815340-mRNA-1
chr5_3 three_prime_UTR 48876919 48877126 48876919 ID=Msa0815340-mRNA-1:three_prime_utr;Parent=Msa0815340-mRNA-1
Gene Sequence

>Msa0815340

ATGCACAATAATAATATGGACAAGGGAAACAGTGTTGAATTAGCTACAAGATCTTCAATTGAAATGGGAAATTCAGTAGTTGATGAGGAATTTGAAGGCAAAGAAGCTTCATTGCTACGTATTGTGGAGACTTTCTTGCGTTTGTTTCCTATTTGTTTATGTGTAACAGCTCTTATCATTATGCTGAAGAATTCTGAGGAAAATGAGTATGGTTCTGTTGCCTATTCTGATCTTGGTGCTTTCAGGTATTTGGTGCATGCCAATGGTATTTGTGCAGGATATTCACTATTCTCAGCAGTCATTGTTGCTGTGCCCCGTCCTTCAACTATGCCTAAGGCTTGGGCTTTCTTTTTGCTTGACCAGGTGCAAACCTACATAATCCTAGCTGCTGGAGCTGTATTAACAGAGGTTCTATACCTTGCTGAATATGGAGTCCCTACTGCAGGATGGAGTTCAGCTTGTGGATCTTTCGGTTCATTTTGTCACAAGATCAAAGCTTCATTAGTTATCACATTTATTGCTGTGGTTTGCTATATATTGCTTTCACTCATATCCTCTTATAGGCTATTTAGCAAGTATGATGCACCAGCACAAGTCAACAACTCCCACAAGGACATTGGCATTGCTGCTTTCAATGGCTGA

Protein sequence

>Msa0815340

MHNNNMDKGNSVELATRSSIEMGNSVVDEEFEGKEASLLRIVETFLRLFPICLCVTALIIMLKNSEENEYGSVAYSDLGAFRYLVHANGICAGYSLFSAVIVAVPRPSTMPKAWAFFLLDQVQTYIILAAGAVLTEVLYLAEYGVPTAGWSSACGSFGSFCHKIKASLVITFIAVVCYILLSLISSYRLFSKYDAPAQVNNSHKDIGIAAFNG*