AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1336320


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1336320 MtrunA17_Chr3g0145181 93.878 147 9 0 1 147 1 147 4.40e-99 289
Msa1336320 MtrunA17_Chr3g0145201 93.269 104 7 0 44 147 679 782 8.80e-63 207
Msa1336320 MtrunA17_Chr8g0370721 68.874 151 39 5 1 147 1 147 3.19e-59 187
Msa1336320 MtrunA17_Chr8g0370711 65.563 151 44 5 1 147 1 147 7.70e-56 179
Msa1336320 MtrunA17_Chr3g0145171 64.539 141 44 4 9 147 11 147 2.92e-50 164
Msa1336320 MtrunA17_Chr4g0064781 43.836 146 70 5 3 147 7 141 3.13e-26 101
Msa1336320 MtrunA17_Chr3g0087031 37.226 137 79 4 12 147 23 153 2.20e-20 85.9
Msa1336320 MtrunA17_Chr8g0375661 34.058 138 82 4 12 146 17 148 2.00e-16 72.4
Msa1336320 MtrunA17_Chr8g0375641 34.014 147 88 4 3 146 8 148 8.87e-16 70.9
Msa1336320 MtrunA17_Chr8g0375671 34.014 147 88 4 3 146 8 148 6.84e-15 70.9
Msa1336320 MtrunA17_Chr8g0375601 33.333 159 93 6 1 151 1 154 1.01e-14 70.5
Msa1336320 MtrunA17_Chr3g0113641 33.088 136 85 4 13 146 15 146 2.37e-14 69.3
Msa1336320 MtrunA17_Chr2g0314401 36.232 138 77 5 12 146 16 145 2.72e-14 68.9
Msa1336320 MtrunA17_Chr7g0239111 35.507 138 77 6 12 146 19 147 1.13e-13 67.4
Msa1336320 MtrunA17_Chr2g0314381 35.036 137 81 5 12 146 41 171 1.52e-13 67.0
Msa1336320 MtrunA17_Chr4g0006371 34.579 107 63 3 43 146 56 158 1.52e-13 67.0
Msa1336320 MtrunA17_Chr7g0232161 33.108 148 86 6 12 157 24 160 1.86e-13 66.6
Msa1336320 MtrunA17_Chr2g0296371 33.929 112 71 2 42 152 43 152 2.06e-13 66.6
Msa1336320 MtrunA17_Chr8g0375591 35.043 117 73 2 12 128 10 123 2.63e-13 63.2
Msa1336320 MtrunA17_Chr1g0162191 35.971 139 76 5 10 146 14 141 3.18e-13 66.2
Msa1336320 MtrunA17_Chr2g0314391 35.507 138 78 5 12 146 35 164 5.38e-13 65.5
Msa1336320 MtrunA17_Chr8g0365241 32.857 140 78 5 12 146 22 150 1.10e-12 64.7
Msa1336320 MtrunA17_Chr8g0375571 30.147 136 90 3 12 146 10 141 1.36e-12 64.3
Msa1336320 MtrunA17_Chr7g0242551 33.654 104 62 3 46 146 51 150 1.39e-12 64.3
Msa1336320 MtrunA17_Chr5g0420981 31.915 141 79 5 12 146 17 146 1.68e-12 63.9
Msa1336320 MtrunA17_Chr2g0314371 35.036 137 81 5 12 146 16 146 1.94e-12 63.9
Msa1336320 MtrunA17_Chr5g0421041 29.730 148 93 4 12 158 12 149 3.46e-12 63.2
Msa1336320 MtrunA17_Chr5g0421011 33.824 136 73 5 12 142 12 135 4.93e-12 62.8
Msa1336320 MtrunA17_Chr5g0421101 31.618 136 84 4 12 146 12 139 3.36e-11 60.5
Msa1336320 MtrunA17_Chr5g0423251 30.921 152 88 5 12 158 12 151 4.45e-11 60.1
Msa1336320 MtrunA17_Chr5g0437181 35.294 102 59 3 48 146 48 145 8.08e-11 59.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1336320 AT5G20400.1 40.816 147 75 6 5 146 1 140 5.93e-25 98.6
Msa1336320 AT1G49390.1 39.865 148 75 6 5 146 1 140 1.45e-24 97.8
Msa1336320 AT5G20550.1 39.189 148 76 6 5 146 1 140 2.85e-22 91.7
Msa1336320 AT5G54000.2 37.584 149 78 6 5 146 1 141 4.00e-21 88.2
Msa1336320 AT1G49390.2 52.381 63 27 2 85 146 1 61 7.71e-15 70.1
Msa1336320 AT2G38240.1 32.353 136 84 3 12 146 11 139 2.03e-14 69.7
Msa1336320 AT1G17010.1 36.170 141 76 7 12 146 16 148 9.96e-14 67.8
Msa1336320 AT3G21420.1 35.507 138 82 4 13 146 17 151 1.19e-13 67.8
Msa1336320 AT1G17020.1 38.614 101 57 3 46 145 50 146 1.95e-13 67.0
Msa1336320 AT4G25300.1 41.000 100 54 4 48 146 51 146 2.06e-13 67.0
Msa1336320 AT3G55970.2 30.435 138 89 4 13 146 14 148 1.93e-12 63.9
Msa1336320 AT1G78550.1 40.404 99 54 3 49 146 53 147 2.35e-12 63.9
Msa1336320 AT3G55970.1 30.435 138 89 4 13 146 14 148 2.61e-12 63.9
Msa1336320 AT5G54000.1 47.619 63 30 2 85 146 1 61 3.15e-11 60.5
Msa1336320 AT5G63590.1 31.429 105 66 3 44 145 4 105 3.42e-11 60.5
Msa1336320 AT4G25310.2 42.500 80 40 3 68 146 69 143 4.02e-11 60.5
Msa1336320 AT4G25310.1 42.500 80 40 3 68 146 69 143 6.37e-11 59.7

Find 76 sgRNAs with CRISPR-Local

Find 177 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTGACCTCTTTCTCTGAATT+TGG 0.078203 tig0001000:-16137 Msa1336320:intergenic
TGAAGATTTGATTCTGAAAA+AGG 0.188200 tig0001000:-13439 Msa1336320:intergenic
ATAATTATTCAGATCTTAAA+AGG 0.235242 tig0001000:+13815 Msa1336320:CDS
CGACTCTTGTGGCTTCTTCA+TGG 0.281580 tig0001000:+13546 Msa1336320:CDS
ACATTAATAAGGAGAGTATC+AGG 0.295260 tig0001000:-15463 Msa1336320:intergenic
TTCACAGATTTGTATAATAC+TGG 0.296490 tig0001000:-16191 Msa1336320:intergenic
CATGTCAAAATTAGCGAATT+TGG 0.305244 tig0001000:+15234 Msa1336320:three_prime_UTR
TTTGATCACCAACATTAATA+AGG 0.306467 tig0001000:-15474 Msa1336320:intergenic
TGACCTCTTTCTCTGAATTT+GGG 0.313229 tig0001000:-16136 Msa1336320:intergenic
TTATTAGTGTTTATGTTGTA+TGG 0.329069 tig0001000:+16405 Msa1336320:three_prime_UTR
TTTGGTGTTGGCTTTGGGTT+TGG 0.334082 tig0001000:+16332 Msa1336320:three_prime_UTR
CTTATCAGAATTTCGTGAAA+TGG 0.353864 tig0001000:+16288 Msa1336320:three_prime_UTR
CTCTCTCTCCACATTCCTTC+AGG 0.361162 tig0001000:-15270 Msa1336320:intergenic
CAGATCTTAAAAGGAGTGAT+TGG 0.366917 tig0001000:+13824 Msa1336320:CDS
TAAACCACTTATTATCTTTG+AGG 0.376533 tig0001000:-15426 Msa1336320:intergenic
GTGGAAGTTAAGCTTGCTTT+TGG 0.377138 tig0001000:+16314 Msa1336320:three_prime_UTR
TCATTCACTAATTTGTCAAT+TGG 0.381266 tig0001000:-16161 Msa1336320:intergenic
AGCAGAATAGTTATAGTTGA+TGG 0.381964 tig0001000:-15373 Msa1336320:intergenic
TCTTCCGTAGGGAGAAATCT+TGG 0.403578 tig0001000:-16234 Msa1336320:intergenic
TGCTGTGCTATTGCTGTAGA+TGG 0.408505 tig0001000:-13496 Msa1336320:intergenic
CCCTCGTAGATATACTCATT+TGG 0.411581 tig0001000:-13391 Msa1336320:intergenic
AGGAGAGTATCAGGGACTAT+TGG 0.417976 tig0001000:-15454 Msa1336320:intergenic
TATTAATGTTGGTGATCAAA+TGG 0.418275 tig0001000:+15477 Msa1336320:three_prime_UTR
TTTCTCTGAATTTGGGCGAC+AGG 0.441071 tig0001000:-16129 Msa1336320:intergenic
ACTTATTATCTTTGAGGACT+TGG 0.443778 tig0001000:-15420 Msa1336320:intergenic
TCTACCACTGCTCTGTGTAC+TGG 0.465041 tig0001000:-16074 Msa1336320:intergenic
TATTATCTTTGAGGACTTGG+AGG 0.465410 tig0001000:-15417 Msa1336320:intergenic
TTCGTGTTGGTGGTAGCCTT+TGG 0.468089 tig0001000:+16369 Msa1336320:three_prime_UTR
ACAAAGTGAGGGAAGTTTCA+AGG 0.475102 tig0001000:+13710 Msa1336320:CDS
GAATTTCGTGAAATGGTTTG+TGG 0.475566 tig0001000:+16295 Msa1336320:three_prime_UTR
TATTCTGCTGCAAGATAAAG+AGG 0.477023 tig0001000:+15387 Msa1336320:three_prime_UTR
AGATCTTAAAAGGAGTGATT+GGG 0.478731 tig0001000:+13825 Msa1336320:CDS
ACGGTTGATACTGAAGGATA+TGG 0.488295 tig0001000:+13787 Msa1336320:CDS
ATCTACAGCAATAGCACAGC+AGG 0.490548 tig0001000:+13498 Msa1336320:CDS
CTGCAAGATAAAGAGGTAGA+AGG 0.491422 tig0001000:+15394 Msa1336320:three_prime_UTR
CTTCCGTAGGGAGAAATCTT+GGG 0.502135 tig0001000:-16233 Msa1336320:intergenic
AAAATTAGCGAATTTGGAAG+AGG 0.504966 tig0001000:+15240 Msa1336320:three_prime_UTR
CCTTCAGTATCAACCGTGCC+TGG 0.506617 tig0001000:-13781 Msa1336320:intergenic
CATATTACAGTCATTGACAT+TGG 0.509691 tig0001000:+13460 Msa1336320:CDS
AGCAGTGGTAGATTCAGAAA+AGG 0.509800 tig0001000:+16085 Msa1336320:three_prime_UTR
ATATAACTGCAATACACATT+CGG 0.512142 tig0001000:-15194 Msa1336320:intergenic
CACAAGAGTCGAGTGCAGAT+TGG 0.514232 tig0001000:-13534 Msa1336320:intergenic
CCTAAAACATGATCAGCCTT+AGG 0.515695 tig0001000:-15331 Msa1336320:intergenic
GATACTCTCCTTATTAATGT+TGG 0.519577 tig0001000:+15466 Msa1336320:three_prime_UTR
TCGCCCAAATTCAGAGAAAG+AGG 0.523539 tig0001000:+16133 Msa1336320:three_prime_UTR
GCTTGTTTCTTGACAAAGTG+AGG 0.525833 tig0001000:+13698 Msa1336320:CDS
AAGTCCTCAAAGATAATAAG+TGG 0.529804 tig0001000:+15422 Msa1336320:three_prime_UTR
GCAATTCTTTGAACTTCCAA+AGG 0.540464 tig0001000:+13732 Msa1336320:CDS
CTGCTCTGTGTACTGGACTC+TGG 0.541662 tig0001000:-16067 Msa1336320:intergenic
TTTATTACAACATGCGCTCA+AGG 0.550881 tig0001000:-16455 Msa1336320:intergenic
TTGATCAATTGGTCTTCCGT+AGG 0.551149 tig0001000:-16246 Msa1336320:intergenic
GACTGTTTCCTGAAGGAATG+TGG 0.554652 tig0001000:+15262 Msa1336320:three_prime_UTR
CAATCTGCACTCGACTCTTG+TGG 0.563131 tig0001000:+13535 Msa1336320:CDS
GGAAGAGGACTGTTTCCTGA+AGG 0.568905 tig0001000:+15255 Msa1336320:three_prime_UTR
TTACTACCCTCCATGTCCTA+AGG 0.569552 tig0001000:+15315 Msa1336320:three_prime_UTR
TGATCAATTGGTCTTCCGTA+GGG 0.575759 tig0001000:-16245 Msa1336320:intergenic
ACAAATTAGTGAATGAGTCA+AGG 0.582347 tig0001000:+16168 Msa1336320:three_prime_UTR
CTTGTTTCTTGACAAAGTGA+GGG 0.582916 tig0001000:+13699 Msa1336320:CDS
ACATGATCAGCCTTAGGACA+TGG 0.583993 tig0001000:-15325 Msa1336320:intergenic
TGGTAGATTCAGAAAAGGAA+AGG 0.602131 tig0001000:+16090 Msa1336320:three_prime_UTR
TATCCCAAGATTTCTCCCTA+CGG 0.608939 tig0001000:+16230 Msa1336320:three_prime_UTR
CCAGGCACGGTTGATACTGA+AGG 0.614618 tig0001000:+13781 Msa1336320:CDS
GGCTGATAGAGTATATCTGA+AGG 0.636076 tig0001000:+13846 Msa1336320:CDS
GAAACAAGCTTGTCATACCA+TGG 0.643039 tig0001000:-13684 Msa1336320:intergenic
TACACACAGATAATGAGCAA+TGG 0.644211 tig0001000:+16038 Msa1336320:intron
TAATGTTGGTGATCAAATGG+AGG 0.646846 tig0001000:+15480 Msa1336320:three_prime_UTR
GAGTCCAGTACACAGAGCAG+TGG 0.647252 tig0001000:+16070 Msa1336320:three_prime_UTR
CATTAATAAGGAGAGTATCA+GGG 0.649449 tig0001000:-15462 Msa1336320:intergenic
GTGATTCAGGCAATCAACCA+TGG 0.671758 tig0001000:+13667 Msa1336320:intron
AATGAGTATATCTACGAGGG+AGG 0.673860 tig0001000:+13394 Msa1336320:CDS
CCAAATGAGTATATCTACGA+GGG 0.674035 tig0001000:+13391 Msa1336320:CDS
TGATCAGCCTTAGGACATGG+AGG 0.674967 tig0001000:-15322 Msa1336320:intergenic
GATCAGCCTTAGGACATGGA+GGG 0.676619 tig0001000:-15321 Msa1336320:intergenic
ATTACAACATGCGCTCAAGG+CGG 0.726715 tig0001000:-16452 Msa1336320:intergenic
TCCAAATGAGTATATCTACG+AGG 0.727256 tig0001000:+13390 Msa1336320:CDS
TTGCTGTAGATGGAGACGTG+AGG 0.769859 tig0001000:-13486 Msa1336310:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTATATGTATTTAAAATTGA+GGG - tig0001000:14224-14243 Msa1336320:intergenic 10.0%
!!! AAGTATTTTTAATGATTTAA+CGG + tig0001000:16481-16500 Msa1336320:three_prime_UTR 10.0%
!! ATAATTATTCAGATCTTAAA+AGG + tig0001000:13815-13834 Msa1336320:CDS 15.0%
!!! GTTATATGTATTTAAAATTG+AGG - tig0001000:14225-14244 Msa1336320:intergenic 15.0%
!! TAAGCATAAAGAAAAAAAAA+TGG - tig0001000:14401-14420 Msa1336320:intergenic 15.0%
!!! AATTATTTTAGAGTATACTT+GGG - tig0001000:14500-14519 Msa1336320:intergenic 15.0%
!!! AAATTATTTTAGAGTATACT+TGG - tig0001000:14501-14520 Msa1336320:intergenic 15.0%
!! TCTATAATAATGATTGTTAT+TGG + tig0001000:14523-14542 Msa1336320:intron 15.0%
!!! ATCTTTTTTTGTTATATTGT+TGG + tig0001000:14574-14593 Msa1336320:intron 15.0%
!!! AGTTATATGAAGTAATTTTA+AGG + tig0001000:15209-15228 Msa1336320:exon 15.0%
!!! GTTATATGAAGTAATTTTAA+GGG + tig0001000:15210-15229 Msa1336320:exon 15.0%
!! TGTTAAATAAAGTTTATATG+AGG + tig0001000:15592-15611 Msa1336320:intron 15.0%
!!! ATCATTTTTTAGGTTTATAT+AGG - tig0001000:15992-16011 Msa1336320:intergenic 15.0%
!! ATATAAACCTAAAAAATGAT+AGG + tig0001000:15992-16011 Msa1336320:intron 15.0%
!! GTTAAATCATTAAAAATACT+TGG - tig0001000:16482-16501 Msa1336320:intergenic 15.0%
!!! TATCAAGATTTTCTGAAAAA+TGG + tig0001000:13235-13254 Msa1336320:five_prime_UTR 20.0%
!! TAATTGAGAATATCATTCTT+GGG - tig0001000:13639-13658 Msa1336320:intergenic 20.0%
!! TTAATTGAGAATATCATTCT+TGG - tig0001000:13640-13659 Msa1336320:intergenic 20.0%
!!! ATGAAAGGAATTTAAAACTT+TGG + tig0001000:13881-13900 Msa1336320:intron 20.0%
!!! TATTTTTCTGTCTTTACATA+TGG + tig0001000:14108-14127 Msa1336320:intron 20.0%
!! GAGTATATATATAAGAGTTT+GGG + tig0001000:14458-14477 Msa1336320:intron 20.0%
!!! GGTGTTTTTCTATAAAATTT+TGG - tig0001000:14685-14704 Msa1336320:intergenic 20.0%
!! TAAAGTTTGAAAACTATGAA+CGG - tig0001000:14706-14725 Msa1336320:intergenic 20.0%
!! TATAAAAAAATACGAGTTAG+AGG - tig0001000:15002-15021 Msa1336320:intergenic 20.0%
!! TTATTTAACAATCTCAGTTA+AGG - tig0001000:15582-15601 Msa1336320:intergenic 20.0%
!! TTATTTAACAATCTCAGTTA+AGG - tig0001000:15582-15601 Msa1336320:intergenic 20.0%
!!! TAAATTTTGCATTGATCAAT+TGG - tig0001000:16260-16279 Msa1336320:intergenic 20.0%
!! TTATTAGTGTTTATGTTGTA+TGG + tig0001000:16405-16424 Msa1336320:three_prime_UTR 20.0%
!! TGAAGATTTGATTCTGAAAA+AGG - tig0001000:13442-13461 Msa1336320:intergenic 25.0%
! AATTAATTGTTGTGTGATTC+AGG + tig0001000:13654-13673 Msa1336320:intron 25.0%
! TTTAAATTCCTTTCATCTTC+AGG - tig0001000:13877-13896 Msa1336320:intergenic 25.0%
!! ATAGCAAATTTCAACTCTTT+TGG + tig0001000:14172-14191 Msa1336320:intron 25.0%
!! TTCCTTATCTTTTATTCTGA+TGG + tig0001000:14324-14343 Msa1336320:intron 25.0%
! CGAGTATATATATAAGAGTT+TGG + tig0001000:14457-14476 Msa1336320:intron 25.0%
!!! ATTGGTGTCATTAAAAAGAT+AGG + tig0001000:14541-14560 Msa1336320:intron 25.0%
!!! ACCTTTTTTATCTATTTCGA+TGG - tig0001000:14602-14621 Msa1336320:intergenic 25.0%
!!! TTAATTTTTTTTCCTCTGTC+CGG + tig0001000:14963-14982 Msa1336320:intron 25.0%
!!! TGATTTTAGCTAAAGGATAA+GGG - tig0001000:15041-15060 Msa1336320:intergenic 25.0%
!!! TTGATTTTAGCTAAAGGATA+AGG - tig0001000:15042-15061 Msa1336320:intergenic 25.0%
!!! TGTCAATTGATTTTAGCTAA+AGG - tig0001000:15048-15067 Msa1336320:intergenic 25.0%
! TTGAAATATGAGTTCCAATT+CGG - tig0001000:15085-15104 Msa1336320:intergenic 25.0%
! AACTCATATTTCAAAGAAGA+TGG + tig0001000:15091-15110 Msa1336320:intron 25.0%
! ATATAACTGCAATACACATT+CGG - tig0001000:15197-15216 Msa1336320:intergenic 25.0%
! TAAACCACTTATTATCTTTG+AGG - tig0001000:15429-15448 Msa1336320:intergenic 25.0%
! TTTGATCACCAACATTAATA+AGG - tig0001000:15477-15496 Msa1336320:intergenic 25.0%
!!! TATTAATGTTGGTGATCAAA+TGG + tig0001000:15477-15496 Msa1336320:three_prime_UTR 25.0%
! TCTAAATACCAAAAAATCCA+AGG + tig0001000:15548-15567 Msa1336320:intron 25.0%
! TCTAAATACCAAAAAATCCA+AGG + tig0001000:15548-15567 Msa1336320:intron 25.0%
!!! CATCAATCCTATCATTTTTT+AGG - tig0001000:16002-16021 Msa1336320:intergenic 25.0%
!! TCATTCACTAATTTGTCAAT+TGG - tig0001000:16164-16183 Msa1336320:intergenic 25.0%
! TTCACAGATTTGTATAATAC+TGG - tig0001000:16194-16213 Msa1336320:intergenic 25.0%
!!! GATTTTGTTTTTATTCGTGT+TGG + tig0001000:16356-16375 Msa1336320:three_prime_UTR 25.0%
!! TTTTCTGAAAAATGGAAGAG+TGG + tig0001000:13243-13262 Msa1336320:five_prime_UTR 30.0%
! TTTCTGAAAAATGGAAGAGT+GGG + tig0001000:13244-13263 Msa1336320:five_prime_UTR 30.0%
TTGATCAGTCTCAAGAAAAA+TGG + tig0001000:13300-13319 Msa1336320:exon 30.0%
CATATTACAGTCATTGACAT+TGG + tig0001000:13460-13479 Msa1336320:CDS 30.0%
!! CATTTTTGCTTTTCTTCCTT+TGG - tig0001000:13751-13770 Msa1336320:intergenic 30.0%
AAGAAAAGCAAAAATGTGCT+CGG + tig0001000:13755-13774 Msa1336320:CDS 30.0%
AGATCTTAAAAGGAGTGATT+GGG + tig0001000:13825-13844 Msa1336320:CDS 30.0%
! CTGAAATCATTGAGTTTTTC+TGG - tig0001000:13907-13926 Msa1336320:intergenic 30.0%
CAGAAAAACTCAATGATTTC+AGG + tig0001000:13905-13924 Msa1336320:intron 30.0%
CAACTTTATTGAGAAGTTAG+TGG - tig0001000:13937-13956 Msa1336320:intergenic 30.0%
GTCAGGGATATTTCTTAATA+TGG + tig0001000:14013-14032 Msa1336320:intron 30.0%
CTCCATCAGAATAAAAGATA+AGG - tig0001000:14329-14348 Msa1336320:intergenic 30.0%
GCCATCGAAATAGATAAAAA+AGG + tig0001000:14598-14617 Msa1336320:intron 30.0%
AAAATACGAGTTAGAGGTTT+GGG - tig0001000:14996-15015 Msa1336320:intergenic 30.0%
AAAAATACGAGTTAGAGGTT+TGG - tig0001000:14997-15016 Msa1336320:intergenic 30.0%
!!! GATTTTAGCTAAAGGATAAG+GGG - tig0001000:15040-15059 Msa1336320:intergenic 30.0%
GTAAATGAATTTGTGAATGC+AGG + tig0001000:15152-15171 Msa1336320:intron 30.0%
!! CAAATTCGCTAATTTTGACA+TGG - tig0001000:15236-15255 Msa1336320:intergenic 30.0%
CATGTCAAAATTAGCGAATT+TGG + tig0001000:15234-15253 Msa1336320:three_prime_UTR 30.0%
AAAATTAGCGAATTTGGAAG+AGG + tig0001000:15240-15259 Msa1336320:three_prime_UTR 30.0%
AGCAGAATAGTTATAGTTGA+TGG - tig0001000:15376-15395 Msa1336320:intergenic 30.0%
! ACTTATTATCTTTGAGGACT+TGG - tig0001000:15423-15442 Msa1336320:intergenic 30.0%
AAGTCCTCAAAGATAATAAG+TGG + tig0001000:15422-15441 Msa1336320:three_prime_UTR 30.0%
!! CATTAATAAGGAGAGTATCA+GGG - tig0001000:15465-15484 Msa1336320:intergenic 30.0%
!! ACATTAATAAGGAGAGTATC+AGG - tig0001000:15466-15485 Msa1336320:intergenic 30.0%
GATACTCTCCTTATTAATGT+TGG + tig0001000:15466-15485 Msa1336320:three_prime_UTR 30.0%
AATTAATGATGTGATCCTAG+TGG + tig0001000:15822-15841 Msa1336320:intron 30.0%
TTATTCTCTTGATCGTACTT+TGG + tig0001000:15878-15897 Msa1336320:intron 30.0%
ACAAATTAGTGAATGAGTCA+AGG + tig0001000:16168-16187 Msa1336320:three_prime_UTR 30.0%
CTTATCAGAATTTCGTGAAA+TGG + tig0001000:16288-16307 Msa1336320:three_prime_UTR 30.0%
!!! TTTGTTTTTATTCGTGTTGG+TGG + tig0001000:16359-16378 Msa1336320:three_prime_UTR 30.0%
! CTCAAGAAAAATGGAAGTGT+CGG + tig0001000:13309-13328 Msa1336320:exon 35.0%
TCCAAATGAGTATATCTACG+AGG + tig0001000:13390-13409 Msa1336320:CDS 35.0%
CCAAATGAGTATATCTACGA+GGG + tig0001000:13391-13410 Msa1336320:CDS 35.0%
! CTTGTTTCTTGACAAAGTGA+GGG + tig0001000:13699-13718 Msa1336320:CDS 35.0%
GCAATTCTTTGAACTTCCAA+AGG + tig0001000:13732-13751 Msa1336320:CDS 35.0%
AGAAAAGCAAAAATGTGCTC+GGG + tig0001000:13756-13775 Msa1336320:CDS 35.0%
CAGATCTTAAAAGGAGTGAT+TGG + tig0001000:13824-13843 Msa1336320:CDS 35.0%
AGCTACTTCAAGTCATGTAA+AGG - tig0001000:13966-13985 Msa1336320:intergenic 35.0%
CTTTAGCGCAATAAAAAGAG+CGG + tig0001000:14721-14740 Msa1336320:intron 35.0%
! TAGAGGTTTGGGTTTAAATC+CGG - tig0001000:14985-15004 Msa1336320:intergenic 35.0%
!! TGATCATGTTTTAGGCTTGA+AGG + tig0001000:15339-15358 Msa1336320:three_prime_UTR 35.0%
TATTCTGCTGCAAGATAAAG+AGG + tig0001000:15387-15406 Msa1336320:three_prime_UTR 35.0%
! TATTATCTTTGAGGACTTGG+AGG - tig0001000:15420-15439 Msa1336320:intergenic 35.0%
!! TAATGTTGGTGATCAAATGG+AGG + tig0001000:15480-15499 Msa1336320:three_prime_UTR 35.0%
ATACCAAAAAATCCAAGGTC+TGG + tig0001000:15553-15572 Msa1336320:intron 35.0%
TATGAGGTACGTAGTAACTT+TGG + tig0001000:15608-15627 Msa1336320:intron 35.0%
ATACCAAAAAATCCAAGGTC+TGG + tig0001000:15553-15572 Msa1336320:intron 35.0%
!! CCTTTAGAACACTTGTAAAC+TGG - tig0001000:15732-15751 Msa1336320:intergenic 35.0%
CCAGTTTACAAGTGTTCTAA+AGG + tig0001000:15729-15748 Msa1336320:intron 35.0%
TACACACAGATAATGAGCAA+TGG + tig0001000:16038-16057 Msa1336320:intron 35.0%
TGGTAGATTCAGAAAAGGAA+AGG + tig0001000:16090-16109 Msa1336320:three_prime_UTR 35.0%
TGACCTCTTTCTCTGAATTT+GGG - tig0001000:16139-16158 Msa1336320:intergenic 35.0%
TTGACCTCTTTCTCTGAATT+TGG - tig0001000:16140-16159 Msa1336320:intergenic 35.0%
GAATTTCGTGAAATGGTTTG+TGG + tig0001000:16295-16314 Msa1336320:three_prime_UTR 35.0%
TAAAAACACGACTCAACCAA+AGG - tig0001000:16388-16407 Msa1336320:intergenic 35.0%
TTTATTACAACATGCGCTCA+AGG - tig0001000:16458-16477 Msa1336320:intergenic 35.0%
!! GAAGTGTCGGTAGAGAAAAA+AGG + tig0001000:13322-13341 Msa1336320:CDS 40.0%
! TTTTAGATCAGTGCAAGAGC+TGG + tig0001000:13345-13364 Msa1336320:CDS 40.0%
CCCTCGTAGATATACTCATT+TGG - tig0001000:13394-13413 Msa1336320:intergenic 40.0%
AATGAGTATATCTACGAGGG+AGG + tig0001000:13394-13413 Msa1336320:CDS 40.0%
GAAACAAGCTTGTCATACCA+TGG - tig0001000:13687-13706 Msa1336320:intergenic 40.0%
! GCTTGTTTCTTGACAAAGTG+AGG + tig0001000:13698-13717 Msa1336320:CDS 40.0%
ACAAAGTGAGGGAAGTTTCA+AGG + tig0001000:13710-13729 Msa1336320:CDS 40.0%
GAAAAGCAAAAATGTGCTCG+GGG + tig0001000:13757-13776 Msa1336320:CDS 40.0%
AAAAGCAAAAATGTGCTCGG+GGG + tig0001000:13758-13777 Msa1336320:CDS 40.0%
! ACGGTTGATACTGAAGGATA+TGG + tig0001000:13787-13806 Msa1336320:CDS 40.0%
GGCTGATAGAGTATATCTGA+AGG + tig0001000:13846-13865 Msa1336320:CDS 40.0%
AGGTACATCCTGAAGATGAA+AGG + tig0001000:13866-13885 Msa1336320:intron 40.0%
ATATCCCTGACAGCAATATG+TGG - tig0001000:14004-14023 Msa1336320:intergenic 40.0%
TATTCAATCCCACTCCGAAT+TGG + tig0001000:15068-15087 Msa1336320:intron 40.0%
TATGAGTTCCAATTCGGAGT+GGG - tig0001000:15079-15098 Msa1336320:intergenic 40.0%
ATATGAGTTCCAATTCGGAG+TGG - tig0001000:15080-15099 Msa1336320:intergenic 40.0%
CCTAAAACATGATCAGCCTT+AGG - tig0001000:15334-15353 Msa1336320:intergenic 40.0%
! CCTAAGGCTGATCATGTTTT+AGG + tig0001000:15331-15350 Msa1336320:three_prime_UTR 40.0%
CTGCAAGATAAAGAGGTAGA+AGG + tig0001000:15394-15413 Msa1336320:three_prime_UTR 40.0%
! ATGGAGGTACGTAGTAACTT+TGG + tig0001000:15496-15515 Msa1336320:intron 40.0%
!!! AGTCCAGACCTTGGATTTTT+TGG - tig0001000:15559-15578 Msa1336320:intergenic 40.0%
!!! AGTCCAGACCTTGGATTTTT+TGG - tig0001000:15559-15578 Msa1336320:intergenic 40.0%
ATGATGTGATCCTAGTGGTT+TGG + tig0001000:15827-15846 Msa1336320:intron 40.0%
TCTCTTGATCGTACTTTGGA+TGG + tig0001000:15882-15901 Msa1336320:intron 40.0%
CTCTTGATCGTACTTTGGAT+GGG + tig0001000:15883-15902 Msa1336320:intron 40.0%
AGCAGTGGTAGATTCAGAAA+AGG + tig0001000:16085-16104 Msa1336320:three_prime_UTR 40.0%
TATCCCAAGATTTCTCCCTA+CGG + tig0001000:16230-16249 Msa1336320:three_prime_UTR 40.0%
!! TGATCAATTGGTCTTCCGTA+GGG - tig0001000:16248-16267 Msa1336320:intergenic 40.0%
!! TTGATCAATTGGTCTTCCGT+AGG - tig0001000:16249-16268 Msa1336320:intergenic 40.0%
!! GTGGAAGTTAAGCTTGCTTT+TGG + tig0001000:16314-16333 Msa1336320:three_prime_UTR 40.0%
!! GTTAAGCTTGCTTTTGGTGT+TGG + tig0001000:16320-16339 Msa1336320:three_prime_UTR 40.0%
!!! TTGCTTTTGGTGTTGGCTTT+GGG + tig0001000:16327-16346 Msa1336320:three_prime_UTR 40.0%
! TGCTGTGCTATTGCTGTAGA+TGG - tig0001000:13499-13518 Msa1336320:intergenic 45.0%
ATCTACAGCAATAGCACAGC+AGG + tig0001000:13498-13517 Msa1336320:CDS 45.0%
GTGATTCAGGCAATCAACCA+TGG + tig0001000:13667-13686 Msa1336320:intron 45.0%
TAGCTCCACATATTGCTGTC+AGG + tig0001000:13996-14015 Msa1336320:intron 45.0%
AGCTCCACATATTGCTGTCA+GGG + tig0001000:13997-14016 Msa1336320:intron 45.0%
TTGGGTTTAAATCCGGACAG+AGG - tig0001000:14978-14997 Msa1336320:intergenic 45.0%
GACTGTTTCCTGAAGGAATG+TGG + tig0001000:15262-15281 Msa1336320:three_prime_UTR 45.0%
TTACTACCCTCCATGTCCTA+AGG + tig0001000:15315-15334 Msa1336320:three_prime_UTR 45.0%
ACATGATCAGCCTTAGGACA+TGG - tig0001000:15328-15347 Msa1336320:intergenic 45.0%
!! AGGAGAGTATCAGGGACTAT+TGG - tig0001000:15457-15476 Msa1336320:intergenic 45.0%
TTTCTCTGAATTTGGGCGAC+AGG - tig0001000:16132-16151 Msa1336320:intergenic 45.0%
TCGCCCAAATTCAGAGAAAG+AGG + tig0001000:16133-16152 Msa1336320:three_prime_UTR 45.0%
CTTCCGTAGGGAGAAATCTT+GGG - tig0001000:16236-16255 Msa1336320:intergenic 45.0%
TCTTCCGTAGGGAGAAATCT+TGG - tig0001000:16237-16256 Msa1336320:intergenic 45.0%
!!! CTTGCTTTTGGTGTTGGCTT+TGG + tig0001000:16326-16345 Msa1336320:three_prime_UTR 45.0%
!! TTTGGTGTTGGCTTTGGGTT+TGG + tig0001000:16332-16351 Msa1336320:three_prime_UTR 45.0%
ATTACAACATGCGCTCAAGG+CGG - tig0001000:16455-16474 Msa1336320:intergenic 45.0%
TTGCTGTAGATGGAGACGTG+AGG - tig0001000:13489-13508 Msa1336320:intergenic 50.0%
CACAAGAGTCGAGTGCAGAT+TGG - tig0001000:13537-13556 Msa1336320:intergenic 50.0%
CAATCTGCACTCGACTCTTG+TGG + tig0001000:13535-13554 Msa1336320:CDS 50.0%
CGACTCTTGTGGCTTCTTCA+TGG + tig0001000:13546-13565 Msa1336320:CDS 50.0%
GGAAGAGGACTGTTTCCTGA+AGG + tig0001000:15255-15274 Msa1336320:three_prime_UTR 50.0%
CTCTCTCTCCACATTCCTTC+AGG - tig0001000:15273-15292 Msa1336320:intergenic 50.0%
GATCAGCCTTAGGACATGGA+GGG - tig0001000:15324-15343 Msa1336320:intergenic 50.0%
TGATCAGCCTTAGGACATGG+AGG - tig0001000:15325-15344 Msa1336320:intergenic 50.0%
CAGTTAAGGAGTCCAGACCT+TGG - tig0001000:15568-15587 Msa1336320:intergenic 50.0%
CAGTTAAGGAGTCCAGACCT+TGG - tig0001000:15568-15587 Msa1336320:intergenic 50.0%
AGAGCACACTCCAAACCACT+AGG - tig0001000:15840-15859 Msa1336320:intergenic 50.0%
TCTACCACTGCTCTGTGTAC+TGG - tig0001000:16077-16096 Msa1336320:intergenic 50.0%
!! TTCGTGTTGGTGGTAGCCTT+TGG + tig0001000:16369-16388 Msa1336320:three_prime_UTR 50.0%
CCTTCAGTATCAACCGTGCC+TGG - tig0001000:13784-13803 Msa1336320:intergenic 55.0%
! CCAGGCACGGTTGATACTGA+AGG + tig0001000:13781-13800 Msa1336320:CDS 55.0%
CTGCTCTGTGTACTGGACTC+TGG - tig0001000:16070-16089 Msa1336320:intergenic 55.0%
GAGTCCAGTACACAGAGCAG+TGG + tig0001000:16070-16089 Msa1336320:three_prime_UTR 55.0%
CAAAAATGTGCTCGGGGGCC+AGG + tig0001000:13763-13782 Msa1336320:CDS 60.0%
ATGTGCTCGGGGGCCAGGCA+CGG + tig0001000:13768-13787 Msa1336320:CDS 70.0%
Chromosome Type Strat End Strand Name
tig0001000 gene 13229 16536 13229 ID=Msa1336320;Name=Msa1336320
tig0001000 mRNA 13229 16536 13229 ID=Msa1336320-mRNA-1;Parent=Msa1336320;Name=Msa1336320-mRNA-1;_AED=0.37;_eAED=0.37;_QI=90|0.5|0.6|0.8|1|1|5|773|163
tig0001000 exon 13229 13567 13229 ID=Msa1336320-mRNA-1:exon:668;Parent=Msa1336320-mRNA-1
tig0001000 exon 13676 13867 13676 ID=Msa1336320-mRNA-1:exon:669;Parent=Msa1336320-mRNA-1
tig0001000 exon 14085 14090 14085 ID=Msa1336320-mRNA-1:exon:670;Parent=Msa1336320-mRNA-1
tig0001000 exon 15174 15501 15174 ID=Msa1336320-mRNA-1:exon:671;Parent=Msa1336320-mRNA-1
tig0001000 exon 16047 16536 16047 ID=Msa1336320-mRNA-1:exon:672;Parent=Msa1336320-mRNA-1
tig0001000 five_prime_UTR 13229 13318 13229 ID=Msa1336320-mRNA-1:five_prime_utr;Parent=Msa1336320-mRNA-1
tig0001000 CDS 13319 13567 13319 ID=Msa1336320-mRNA-1:cds;Parent=Msa1336320-mRNA-1
tig0001000 CDS 13676 13867 13676 ID=Msa1336320-mRNA-1:cds;Parent=Msa1336320-mRNA-1
tig0001000 CDS 14085 14090 14085 ID=Msa1336320-mRNA-1:cds;Parent=Msa1336320-mRNA-1
tig0001000 CDS 15174 15218 15174 ID=Msa1336320-mRNA-1:cds;Parent=Msa1336320-mRNA-1
tig0001000 three_prime_UTR 15219 15501 15219 ID=Msa1336320-mRNA-1:three_prime_utr;Parent=Msa1336320-mRNA-1
tig0001000 three_prime_UTR 16047 16536 16047 ID=Msa1336320-mRNA-1:three_prime_utr;Parent=Msa1336320-mRNA-1
Gene Sequence

>Msa1336320

ATGGAAGTGTCGGTAGAGAAAAAAGGTTTTAGATCAGTGCAAGAGCTGGCATTGAATTCTGAAAATGTGACTCCAAATGAGTATATCTACGAGGGAGGTGTTGAACTTTATGATGCTCTTCCTTTTTCAGAATCAAATCTTCATATTACAGTCATTGACATTGGCAACCTCACGTCTCCATCTACAGCAATAGCACAGCAGGAGCTTCAGAAACTCCAATCTGCACTCGACTCTTGTGGCTTCTTCATGGCAATCAACCATGGTATGACAAGCTTGTTTCTTGACAAAGTGAGGGAAGTTTCAAGGCAATTCTTTGAACTTCCAAAGGAAGAAAAGCAAAAATGTGCTCGGGGGCCAGGCACGGTTGATACTGAAGGATATGGAAATGATAATTATTCAGATCTTAAAAGGAGTGATTGGGCTGATAGAGTATATCTGAAGCGTAAAGAATACTACACAACAATATACCGAATGTGTATTGCAGTTATATGA

Protein sequence

>Msa1336320

MEVSVEKKGFRSVQELALNSENVTPNEYIYEGGVELYDALPFSESNLHITVIDIGNLTSPSTAIAQQELQKLQSALDSCGFFMAINHGMTSLFLDKVREVSRQFFELPKEEKQKCARGPGTVDTEGYGNDNYSDLKRSDWADRVYLKRKEYYTTIYRMCIAVI*