AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1444750


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1444750 MtrunA17_Chr4g0041041 91.845 233 14 1 31 258 154 386 1.27e-156 440
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 83 sgRNAs with CRISPR-Local

Find 362 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTTGTTTGTCTTACGTTAA+AGG 0.153196 tig0030819:-28210 Msa1444750:three_prime_UTR
CTGAGCCACAGCTAGAAAAT+AGG 0.255514 tig0030819:+29806 None:intergenic
ACTTGTTAGGAAGCTTTATT+TGG 0.269913 tig0030819:-28393 Msa1444750:three_prime_UTR
TTGTTCTTTGGTTACTTGAA+TGG 0.305201 tig0030819:-28358 Msa1444750:three_prime_UTR
ATAATCAAGAATAGGAAATT+AGG 0.319713 tig0030819:-28332 Msa1444750:three_prime_UTR
CTGTGAACATTATCCAATCT+TGG 0.335914 tig0030819:-28159 Msa1444750:three_prime_UTR
CGCAGATAATGCGTGACAAT+TGG 0.343858 tig0030819:-30079 Msa1444750:CDS
TTCCTTTACTACATTCACTA+TGG 0.352084 tig0030819:+29238 None:intergenic
AACCAGCTTCCTTCAGTGTT+TGG 0.362900 tig0030819:+28556 None:intergenic
CTTGTATTGACAACCAAGAT+TGG 0.378228 tig0030819:+28146 None:intergenic
CGAGTACTACTTGACTGATA+TGG 0.380852 tig0030819:-28580 Msa1444750:CDS
ACATTCACTATGGCTCTTGC+AGG 0.387189 tig0030819:+29248 None:intergenic
GTTTGCTATGACAGATAATT+CGG 0.399971 tig0030819:-29186 Msa1444750:intron
TCTAGCTGTGGCTCAGCATA+AGG 0.402145 tig0030819:-29799 Msa1444750:CDS
TGCTCTTCATCAATGTAAAC+AGG 0.408653 tig0030819:+28619 None:intergenic
ACAAGATCAAATGATTTAGA+AGG 0.410624 tig0030819:+29708 None:intergenic
TAAAATGGATACATGCAAAT+GGG 0.418740 tig0030819:-29746 Msa1444750:CDS
TAGAATGGATGAGCAGCTTA+AGG 0.425310 tig0030819:-28248 Msa1444750:three_prime_UTR
ACAGCAAACGGCGGCGGCGA+CGG 0.426393 tig0030819:-34264 Msa1444750:CDS
TCTTGTGTCTATTTCTTATG+TGG 0.429692 tig0030819:-29691 Msa1444750:intron
CCCTAGGCACGTGACTTTAA+CGG 0.438446 tig0030819:-28505 Msa1444750:CDS
ATAAAATGGATACATGCAAA+TGG 0.451046 tig0030819:-29747 Msa1444750:CDS
ATTAGGAATGACGTTTAAGA+AGG 0.453555 tig0030819:-28315 Msa1444750:three_prime_UTR
GGAGAGACAGCAAACGGCGG+CGG 0.458667 tig0030819:-34270 Msa1444750:CDS
TGTGCCTCAATGAAACATCT+TGG 0.462950 tig0030819:-28478 Msa1444750:exon
CAAGTAGTACTCGTCAAGAA+AGG 0.463853 tig0030819:+28590 None:intergenic
AATGGTGTATAATCAAGAAT+AGG 0.474995 tig0030819:-28340 Msa1444750:three_prime_UTR
AGGAAGCATTCCGTCTCCTT+CGG 0.475832 tig0030819:-29220 Msa1444750:CDS
GCATTCCGTCTCCTTCGGCC+TGG 0.478773 tig0030819:-29215 Msa1444750:CDS
TGTACTTTCGAATGTTAGAA+TGG 0.481450 tig0030819:-28263 Msa1444750:three_prime_UTR
TGAGCCACAGCTAGAAAATA+GGG 0.482232 tig0030819:+29807 None:intergenic
GAGAGAAGCACCGCCGCAGA+AGG 0.493567 tig0030819:-34235 Msa1444750:CDS
GTGCCTCAATGAAACATCTT+GGG 0.496553 tig0030819:-28477 Msa1444750:exon
CAATCTTGGTTGTCAATACA+AGG 0.498360 tig0030819:-28145 None:intergenic
GCCGTTAAAGTCACGTGCCT+AGG 0.504069 tig0030819:+28504 None:intergenic
CTAGACATTGGATGTTCTGT+GGG 0.504597 tig0030819:-29996 Msa1444750:CDS
CATTCACAAACATCTATGAT+TGG 0.507503 tig0030819:-30026 Msa1444750:CDS
AGAATGGATGAGCAGCTTAA+GGG 0.514731 tig0030819:-28247 Msa1444750:three_prime_UTR
AGCCATAGTGAATGTAGTAA+AGG 0.515798 tig0030819:-29240 Msa1444750:CDS
GTCATAGCAAACGTGCCTCC+AGG 0.518839 tig0030819:+29197 None:intergenic
CTTTAAAGCTATCTACTTCA+CGG 0.520876 tig0030819:-28187 Msa1444750:three_prime_UTR
TTCATCAATGTAAACAGGAC+AGG 0.523632 tig0030819:+28624 None:intergenic
TGCCTCCAGGCCGAAGGAGA+CGG 0.527581 tig0030819:+29210 None:intergenic
AAACGGCGGCGGCGACGGCG+AGG 0.529193 tig0030819:-34259 Msa1444750:CDS
CATTGACTTAGTAGCAGCCT+CGG 0.529201 tig0030819:+30145 None:intergenic
CGAGGCTGCTACTAAGTCAA+TGG 0.529702 tig0030819:-30144 Msa1444750:CDS
CGCTTCTTCTACTGATGAAG+CGG 0.534196 tig0030819:+30103 None:intergenic
AAGTAGTACTCGTCAAGAAA+GGG 0.541395 tig0030819:+28591 None:intergenic
GCACCGCCGCAGAAGGAGAG+AGG 0.544691 tig0030819:-34228 Msa1444750:CDS
CCGTTAAAGTCACGTGCCTA+GGG 0.548980 tig0030819:+28505 None:intergenic
TCACAATGACATTGGCCGTA+GGG 0.555452 tig0030819:+29943 None:intergenic
TCTAGACATTGGATGTTCTG+TGG 0.556538 tig0030819:-29997 Msa1444750:CDS
GACCAAACACTGAAGGAAGC+TGG 0.567832 tig0030819:-28558 Msa1444750:CDS
ACATGCAAATGGGGAAGACA+CGG 0.570127 tig0030819:-29736 Msa1444750:CDS
CAACATTTGAGTTTAATGAA+AGG 0.570241 tig0030819:-28420 Msa1444750:three_prime_UTR
CGGAGAGGAGAGACAGCAAA+CGG 0.575726 tig0030819:-34276 Msa1444750:CDS
AGAGAGGAGAGACACGGTGA+AGG 0.578892 tig0030819:-34212 Msa1444750:intron
TTCCGTCTCCTTCGGCCTGG+AGG 0.580123 tig0030819:-29212 Msa1444750:CDS
ATTGGTGACATTCTAGACAT+TGG 0.582465 tig0030819:-30008 Msa1444750:CDS
GTTAAAACTCACAATGACAT+TGG 0.583152 tig0030819:+29935 None:intergenic
GAATGGATGAGCAGCTTAAG+GGG 0.587364 tig0030819:-28246 Msa1444750:three_prime_UTR
AGAGTCGCGTGTGATGAAAA+CGG 0.587649 tig0030819:-34323 None:intergenic
TCTCCTCTCTCCTTCTGCGG+CGG 0.590019 tig0030819:+34225 Msa1444760:CDS
ATAGGCAGCAGCAGAAGCCG+AGG 0.591142 tig0030819:-30162 Msa1444750:intron
TAAAGTCACGTGCCTAGGGT+TGG 0.598671 tig0030819:+28509 None:intergenic
TCTTGCGGACAAGTTCCCTA+CGG 0.605513 tig0030819:-29958 Msa1444750:CDS
AGTAAGCTCAAGATTTCTTG+CGG 0.617617 tig0030819:-29973 Msa1444750:CDS
AAAATGGATACATGCAAATG+GGG 0.624426 tig0030819:-29745 Msa1444750:CDS
AATCAATTCTTACCAACCCT+AGG 0.624884 tig0030819:-28521 Msa1444750:CDS
TCTTCTACTGATGAAGCGGT+AGG 0.627521 tig0030819:+30107 None:intergenic
CATGCAAATGGGGAAGACAC+GGG 0.629318 tig0030819:-29735 Msa1444750:CDS
TGATATGGACCAAACACTGA+AGG 0.631121 tig0030819:-28565 Msa1444750:CDS
GAGAGAAAACTGTCGCGGAG+AGG 0.635155 tig0030819:-34291 Msa1444750:CDS
CAAACGTGCCTCCAGGCCGA+AGG 0.635743 tig0030819:+29204 None:intergenic
AGAGGAGAGACAGCAAACGG+CGG 0.639659 tig0030819:-34273 Msa1444750:CDS
AATCCCAAGATGTTTCATTG+AGG 0.639944 tig0030819:+28474 None:intergenic
GTCTCTCCTCTCTCCTTCTG+CGG 0.652217 tig0030819:+34222 Msa1444760:CDS
AGAAGGAGAGAGGAGAGACA+CGG 0.658008 tig0030819:-34218 Msa1444750:CDS
CTCACAATGACATTGGCCGT+AGG 0.667491 tig0030819:+29942 None:intergenic
GTGTGATGAAAACGGCGGCG+AGG 0.686952 tig0030819:-34315 None:intergenic
GCTCAGCATAAGGAAAAGAG+CGG 0.692800 tig0030819:-29789 Msa1444750:CDS
GAGGAGAGAGAAAACTGTCG+CGG 0.696810 tig0030819:-34296 Msa1444750:CDS
GTCGCGTGTGATGAAAACGG+CGG 0.744389 tig0030819:-34320 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATCATGATATTAAAATAATT+TGG - tig0030819:30062-30081 Msa1444750:CDS 10.0%
!! TCATGATATTAAAATAATTT+GGG - tig0030819:30063-30082 Msa1444750:CDS 10.0%
!!! TTGTGAAATTTTTGTATTTT+AGG - tig0030819:28350-28369 Msa1444750:three_prime_UTR 15.0%
!! ATATATGTTATGGAAATTTA+TGG - tig0030819:29570-29589 Msa1444750:intron 15.0%
!! ATTACCTATTATGAAATATT+TGG - tig0030819:29739-29758 Msa1444750:CDS 15.0%
!! AATATGTTAGATTTAACATA+TGG - tig0030819:29800-29819 Msa1444750:CDS 15.0%
!!! GTGTTATATTTAATTTTATG+TGG - tig0030819:30287-30306 Msa1444750:intron 15.0%
!!! TGGATAAAGTATTTTAATGA+GGG + tig0030819:28512-28531 None:intergenic 20.0%
!!! TTGGATAAAGTATTTTAATG+AGG + tig0030819:28513-28532 None:intergenic 20.0%
!!! TTAAAGTGATTCCATTATTT+TGG + tig0030819:28712-28731 None:intergenic 20.0%
!!! TTTGATTTGAAACAATGTTA+TGG + tig0030819:28925-28944 None:intergenic 20.0%
!! ATAACATTGTTTCAAATCAA+AGG - tig0030819:28924-28943 Msa1444750:intron 20.0%
!! TAACATTGTTTCAAATCAAA+GGG - tig0030819:28925-28944 Msa1444750:intron 20.0%
!!! AACAGTATTTTACAGATTTA+TGG + tig0030819:29109-29128 None:intergenic 20.0%
!! TAAATCTGTAAAATACTGTT+AGG - tig0030819:29109-29128 Msa1444750:intron 20.0%
!!! CATAACTATTAATCTTTTTC+AGG - tig0030819:29293-29312 Msa1444750:intron 20.0%
!! CAAGATATACAACAAATATT+TGG - tig0030819:29346-29365 Msa1444750:intron 20.0%
!! TATGATTTACTTGTGATTAA+TGG - tig0030819:29470-29489 Msa1444750:intron 20.0%
!! CCATAACATATATTCATAAA+TGG + tig0030819:29563-29582 None:intergenic 20.0%
!! CCATTTATGAATATATGTTA+TGG - tig0030819:29560-29579 Msa1444750:intron 20.0%
!! AACACCAAATATTTCATAAT+AGG + tig0030819:29746-29765 None:intergenic 20.0%
!! TAAATTGTCAAAATATCAAG+TGG - tig0030819:29932-29951 Msa1444750:intron 20.0%
!! CATGATAATATGAAAAGTAA+TGG - tig0030819:30025-30044 Msa1444750:CDS 20.0%
!!! CATAGAAAATATTGTGATTT+TGG - tig0030819:30132-30151 Msa1444750:CDS 20.0%
!! ATTCAATGTATGATATATCT+TGG - tig0030819:30403-30422 Msa1444750:intron 20.0%
!! AATACATTGAAGACATTATT+AGG - tig0030819:30730-30749 Msa1444750:intron 20.0%
!! ATACATTGAAGACATTATTA+GGG - tig0030819:30731-30750 Msa1444750:intron 20.0%
!!! ATTGGTAATCAATTAGATTT+GGG + tig0030819:30769-30788 None:intergenic 20.0%
!! AAACTTAACTTACTAAGTAA+TGG - tig0030819:31225-31244 Msa1444750:intron 20.0%
!! AATACTAAATCACATAAATC+CGG + tig0030819:31291-31310 None:intergenic 20.0%
!!! GTGATTTAGTATTTTGAAAA+TGG - tig0030819:31298-31317 Msa1444750:intron 20.0%
!!! ATTTAGTATTTTGAAAATGG+TGG - tig0030819:31301-31320 Msa1444750:intron 20.0%
!!! TTTAGTATTTTGAAAATGGT+GGG - tig0030819:31302-31321 Msa1444750:intron 20.0%
!!! TTAAAGTGATTCCATTATTT+TGG + tig0030819:28712-28731 None:intergenic 20.0%
!!! TTTGATTTGAAACAATGTTA+TGG + tig0030819:28925-28944 None:intergenic 20.0%
!! ATAACATTGTTTCAAATCAA+AGG - tig0030819:28924-28943 Msa1444750:intron 20.0%
!! TAACATTGTTTCAAATCAAA+GGG - tig0030819:28925-28944 Msa1444750:intron 20.0%
!!! AACAGTATTTTACAGATTTA+TGG + tig0030819:29109-29128 None:intergenic 20.0%
!! TAAATCTGTAAAATACTGTT+AGG - tig0030819:29109-29128 Msa1444750:intron 20.0%
!!! CATAACTATTAATCTTTTTC+AGG - tig0030819:29293-29312 Msa1444750:intron 20.0%
!! CAAGATATACAACAAATATT+TGG - tig0030819:29346-29365 Msa1444750:intron 20.0%
!!! AGATCTTATGATATTTTCTA+TGG + tig0030819:32261-32280 None:intergenic 20.0%
!!! CATTTTATAGGATTTTTTCT+AGG + tig0030819:32697-32716 None:intergenic 20.0%
!! CTAGAAAAAATCCTATAAAA+TGG - tig0030819:32695-32714 Msa1444750:intron 20.0%
!! TATGTATCAATTAATTCACA+TGG + tig0030819:33101-33120 None:intergenic 20.0%
!! GGATATATGATTTAATGTAT+TGG + tig0030819:33584-33603 Msa1444760:intron 20.0%
!!! CATAATGAATTGAGATTTTA+TGG - tig0030819:33698-33717 Msa1444750:intron 20.0%
!!! TTGTTTCTTTTGAATCTTTT+TGG - tig0030819:34005-34024 Msa1444750:intron 20.0%
!! ATAATCAAGAATAGGAAATT+AGG - tig0030819:34124-34143 Msa1444750:intron 20.0%
! TTCTCTTTAGCAAAATTTGA+AGG + tig0030819:28389-28408 None:intergenic 25.0%
!! TTAAATATTTTCCCAAACAG+TGG - tig0030819:28444-28463 Msa1444750:three_prime_UTR 25.0%
!!! AATGAGGGAATGTAATTTTT+TGG + tig0030819:28497-28516 None:intergenic 25.0%
! TAAAGATTTGTGTTTGTCAA+AGG - tig0030819:28544-28563 Msa1444750:CDS 25.0%
! TGATTAAACCCAAACATAAA+AGG + tig0030819:28655-28674 None:intergenic 25.0%
! ACATTACTATCTGTTTATGT+TGG - tig0030819:28680-28699 Msa1444750:intron 25.0%
! TGATTATAACCTTTGACAAA+AGG - tig0030819:28828-28847 Msa1444750:intron 25.0%
! GATTATAACCTTTGACAAAA+GGG - tig0030819:28829-28848 Msa1444750:intron 25.0%
! ATGATTATAACCTTTGACAA+AGG - tig0030819:28827-28846 Msa1444750:intron 25.0%
! TGATTATAACCTTTGACAAA+GGG - tig0030819:28828-28847 Msa1444750:intron 25.0%
! AACATTGTTTCAAATCAAAG+GGG - tig0030819:28926-28945 Msa1444750:intron 25.0%
! TATAATGCACTATAAATGCT+TGG - tig0030819:28973-28992 Msa1444750:intron 25.0%
! TGTTGTATATCTTGATTGTT+GGG + tig0030819:29340-29359 None:intergenic 25.0%
! TTGTTGTATATCTTGATTGT+TGG + tig0030819:29341-29360 None:intergenic 25.0%
! AAATCGAACCTAAATATTGT+TGG + tig0030819:29451-29470 None:intergenic 25.0%
!!! TGTAAGTTGATATATGTTCA+TGG - tig0030819:30101-30120 Msa1444750:CDS 25.0%
!! CATTGGTAATCAATTAGATT+TGG + tig0030819:30770-30789 None:intergenic 25.0%
! CAAATCTAATTGATTACCAA+TGG - tig0030819:30768-30787 Msa1444750:intron 25.0%
! ACTCTTAAATTCTCATGAAA+AGG - tig0030819:31057-31076 Msa1444750:intron 25.0%
! CTCTTAAATTCTCATGAAAA+GGG - tig0030819:31058-31077 Msa1444750:intron 25.0%
! ATAACTTACACATAGAATCT+CGG + tig0030819:31141-31160 None:intergenic 25.0%
!!! TTAGTATTTTGAAAATGGTG+GGG - tig0030819:31303-31322 Msa1444750:intron 25.0%
! TGATTATAACCTTTGACAAA+AGG - tig0030819:28828-28847 Msa1444750:intron 25.0%
! GATTATAACCTTTGACAAAA+GGG - tig0030819:28829-28848 Msa1444750:intron 25.0%
! ATGATTATAACCTTTGACAA+AGG - tig0030819:28827-28846 Msa1444750:intron 25.0%
! TGATTATAACCTTTGACAAA+GGG - tig0030819:28828-28847 Msa1444750:intron 25.0%
! AACATTGTTTCAAATCAAAG+GGG - tig0030819:28926-28945 Msa1444750:intron 25.0%
! TATAATGCACTATAAATGCT+TGG - tig0030819:28973-28992 Msa1444750:intron 25.0%
! TGTTGTATATCTTGATTGTT+GGG + tig0030819:29340-29359 None:intergenic 25.0%
! TTGTTGTATATCTTGATTGT+TGG + tig0030819:29341-29360 None:intergenic 25.0%
!! AGATTTTCCAATGTAATATG+TGG - tig0030819:32110-32129 Msa1444750:intron 25.0%
! CAAAAAACCACATATTACAT+TGG + tig0030819:32120-32139 None:intergenic 25.0%
! TCGTTAAACAAACTATTATG+TGG - tig0030819:32195-32214 Msa1444750:intron 25.0%
! TAAACAAACTATTATGTGGA+TGG - tig0030819:32199-32218 Msa1444750:intron 25.0%
! GATCTGTATTATATGATGAT+AGG - tig0030819:32276-32295 Msa1444750:intron 25.0%
!! TTTGCATGTATCCATTTTAT+AGG + tig0030819:32709-32728 None:intergenic 25.0%
! ATAAAATGGATACATGCAAA+TGG - tig0030819:32709-32728 Msa1444750:intron 25.0%
! TAAAATGGATACATGCAAAT+GGG - tig0030819:32710-32729 Msa1444750:intron 25.0%
! ACAAGATCAAATGATTTAGA+AGG + tig0030819:32751-32770 None:intergenic 25.0%
!! AAATATTAGTCTCTAAACAG+TGG + tig0030819:32865-32884 None:intergenic 25.0%
!! AAATGTGTATTTTACTTCCT+AGG - tig0030819:32976-32995 Msa1444750:intron 25.0%
! ATATGATCAAGAAGAAAAGA+TGG + tig0030819:33408-33427 Msa1444760:intron 25.0%
! TTACTGTTAACCACAATATA+GGG + tig0030819:33470-33489 Msa1444760:intron 25.0%
! TTTACTGTTAACCACAATAT+AGG + tig0030819:33471-33490 Msa1444760:intron 25.0%
! AGTATTAAGAGTTATGTTAC+AGG + tig0030819:33652-33671 Msa1444760:intron 25.0%
!! GAAAGATCTTTAATCAGTTT+TGG + tig0030819:33726-33745 Msa1444760:intron 25.0%
! AAGATCTTTCATGTAGTTTA+TGG - tig0030819:33736-33755 Msa1444750:intron 25.0%
!!! TTGTTTTTTTCATGTCTTGT+AGG - tig0030819:33801-33820 Msa1444750:intron 25.0%
!! CAACATTTGAGTTTAATGAA+AGG - tig0030819:34036-34055 Msa1444750:intron 25.0%
!! AATGAAAGGTTTTACTTGTT+AGG - tig0030819:34050-34069 Msa1444750:intron 25.0%
!!! TTGTTTTTTGCTTTGTTCTT+TGG - tig0030819:34086-34105 Msa1444750:intron 25.0%
! AATGGTGTATAATCAAGAAT+AGG - tig0030819:34116-34135 Msa1444750:intron 25.0%
! AATCTTTAAGAGTGTGTGTT+TGG + tig0030819:28532-28551 None:intergenic 30.0%
ATAGTTGTAAAAATGTGCCT+TGG - tig0030819:28576-28595 Msa1444750:CDS 30.0%
GTTATCATTCATATCTTGGA+TGG + tig0030819:28605-28624 None:intergenic 30.0%
GTCTGTTATCATTCATATCT+TGG + tig0030819:28609-28628 None:intergenic 30.0%
!! GTTGGTGATTTCCAAAATAA+TGG - tig0030819:28698-28717 Msa1444750:intron 30.0%
TCAAAAGTTGTAACTCTTCA+TGG - tig0030819:28733-28752 Msa1444750:intron 30.0%
CAAAAGTTGTAACTCTTCAT+GGG - tig0030819:28734-28753 Msa1444750:intron 30.0%
TGGGAATCATTCATATACAT+TGG - tig0030819:28753-28772 Msa1444750:intron 30.0%
ATACACTTGAATCAATGCAA+AGG + tig0030819:28866-28885 None:intergenic 30.0%
ATTAAACATCCCTTTGTCAA+AGG + tig0030819:28899-28918 None:intergenic 30.0%
ACTATAAATGCTTGGCATTT+GGG - tig0030819:28981-29000 Msa1444750:intron 30.0%
! GATTTAGAGTAAGAGAATGA+TGG + tig0030819:29048-29067 None:intergenic 30.0%
ACTGTATATTGGATGCAATA+AGG + tig0030819:29208-29227 None:intergenic 30.0%
TGCATCCAATATACAGTTAT+TGG - tig0030819:29211-29230 Msa1444750:CDS 30.0%
ATCCAATATACAGTTATTGG+TGG - tig0030819:29214-29233 Msa1444750:CDS 30.0%
TCCAATATACAGTTATTGGT+GGG - tig0030819:29215-29234 Msa1444750:CDS 30.0%
ATATTGTTGGAACTTGTGTT+GGG + tig0030819:29438-29457 None:intergenic 30.0%
AATATTGTTGGAACTTGTGT+TGG + tig0030819:29439-29458 None:intergenic 30.0%
CACAAGTTCCAACAATATTT+AGG - tig0030819:29440-29459 Msa1444750:intron 30.0%
! TGATTAATGGCTGCAATTTT+TGG - tig0030819:29483-29502 Msa1444750:intron 30.0%
! GATTAATGGCTGCAATTTTT+GGG - tig0030819:29484-29503 Msa1444750:intron 30.0%
TACATATTCATCCATGACTA+CGG - tig0030819:29520-29539 Msa1444750:intron 30.0%
TAATCCCATCTTATGAAGTT+TGG - tig0030819:30329-30348 Msa1444750:intron 30.0%
ATAGCCAAACTTCATAAGAT+GGG + tig0030819:30336-30355 None:intergenic 30.0%
AATTCTCATAGCTATGTCTA+TGG + tig0030819:30599-30618 None:intergenic 30.0%
ATTTGACGAAATGATTGACA+AGG - tig0030819:30682-30701 Msa1444750:intron 30.0%
ATCTAATTGATTACCAATGG+TGG - tig0030819:30771-30790 Msa1444750:intron 30.0%
TTGGACCATAAGAAGAAAAA+CGG - tig0030819:30905-30924 Msa1444750:intron 30.0%
TATGCTATATGTCCATTAAG+AGG + tig0030819:30945-30964 None:intergenic 30.0%
GACATATAGCATATATTTGC+TGG - tig0030819:30952-30971 Msa1444750:intron 30.0%
TGTAAGATGACACATTAAGA+AGG + tig0030819:31099-31118 None:intergenic 30.0%
CTTACAAGTCTCTTTATCAA+TGG - tig0030819:31113-31132 Msa1444750:intron 30.0%
CACTTGTTCTAATGAATAGT+TGG - tig0030819:31164-31183 Msa1444750:intron 30.0%
!! TAGTATTTTGAAAATGGTGG+GGG - tig0030819:31304-31323 Msa1444750:intron 30.0%
!! GTTGGTGATTTCCAAAATAA+TGG - tig0030819:28698-28717 Msa1444750:intron 30.0%
TCAAAAGTTGTAACTCTTCA+TGG - tig0030819:28733-28752 Msa1444750:intron 30.0%
CAAAAGTTGTAACTCTTCAT+GGG - tig0030819:28734-28753 Msa1444750:intron 30.0%
TGGGAATCATTCATATACAT+TGG - tig0030819:28753-28772 Msa1444750:intron 30.0%
ATACACTTGAATCAATGCAA+AGG + tig0030819:28866-28885 None:intergenic 30.0%
ATTAAACATCCCTTTGTCAA+AGG + tig0030819:28899-28918 None:intergenic 30.0%
ACTATAAATGCTTGGCATTT+GGG - tig0030819:28981-29000 Msa1444750:intron 30.0%
! GATTTAGAGTAAGAGAATGA+TGG + tig0030819:29048-29067 None:intergenic 30.0%
ACTGTATATTGGATGCAATA+AGG + tig0030819:29208-29227 None:intergenic 30.0%
TGCATCCAATATACAGTTAT+TGG - tig0030819:29211-29230 Msa1444750:CDS 30.0%
ATCCAATATACAGTTATTGG+TGG - tig0030819:29214-29233 Msa1444750:CDS 30.0%
TCCAATATACAGTTATTGGT+GGG - tig0030819:29215-29234 Msa1444750:CDS 30.0%
TGTAAATGTGCATAAACTGT+TGG + tig0030819:32083-32102 None:intergenic 30.0%
AAATGCACCTATGATTCAAA+TGG + tig0030819:32163-32182 None:intergenic 30.0%
! TTTTCTATGGAATTTCAGCA+AGG + tig0030819:32248-32267 None:intergenic 30.0%
CATTCACAAACATCTATGAT+TGG - tig0030819:32430-32449 Msa1444750:intron 30.0%
GTTAAAACTCACAATGACAT+TGG + tig0030819:32524-32543 None:intergenic 30.0%
TTGATTGATATGTTTGTTCC+AGG - tig0030819:32612-32631 Msa1444750:intron 30.0%
TGATTGATATGTTTGTTCCA+GGG - tig0030819:32613-32632 Msa1444750:intron 30.0%
AAAATGGATACATGCAAATG+GGG - tig0030819:32711-32730 Msa1444750:intron 30.0%
! TCTTGTGTCTATTTCTTATG+TGG - tig0030819:32765-32784 Msa1444750:intron 30.0%
GAATCTTGCAATTGAAATCT+AGG - tig0030819:33003-33022 Msa1444750:intron 30.0%
TCATGAAACTGCATAAATTG+AGG + tig0030819:33184-33203 None:intergenic 30.0%
TTCCTTTACTACATTCACTA+TGG + tig0030819:33221-33240 None:intergenic 30.0%
!! GTTTGCTATGACAGATAATT+CGG - tig0030819:33270-33289 Msa1444750:intron 30.0%
ATGACATTAGTGTTTGTGAT+AGG + tig0030819:33338-33357 None:intergenic 30.0%
AAAGATGGAAAAATACCTGT+AGG + tig0030819:33393-33412 Msa1444760:CDS 30.0%
GGTATAAATTGTTGTCTAGT+AGG - tig0030819:33757-33776 Msa1444750:intron 30.0%
!! ACTTGTTAGGAAGCTTTATT+TGG - tig0030819:34063-34082 Msa1444750:intron 30.0%
TTGTTCTTTGGTTACTTGAA+TGG - tig0030819:34098-34117 Msa1444750:intron 30.0%
ATTAGGAATGACGTTTAAGA+AGG - tig0030819:34141-34160 Msa1444750:intron 30.0%
TGTACTTTCGAATGTTAGAA+TGG - tig0030819:34193-34212 Msa1444750:intron 30.0%
! CTTTGTTTGTCTTACGTTAA+AGG - tig0030819:34246-34265 Msa1444750:CDS 30.0%
!! CTTTAAAGCTATCTACTTCA+CGG - tig0030819:34269-34288 Msa1444750:CDS 30.0%
TTGTGAGAGAAAACTGAGAA+AGG - tig0030819:28278-28297 Msa1444750:three_prime_UTR 35.0%
! TTTTCCCAAACAGTGGAATT+TGG - tig0030819:28451-28470 Msa1444750:three_prime_UTR 35.0%
TTTCCCAAACAGTGGAATTT+GGG - tig0030819:28452-28471 Msa1444750:three_prime_UTR 35.0%
!!! GAGGGAATGTAATTTTTTGG+AGG + tig0030819:28494-28513 None:intergenic 35.0%
! TTTGCTGGACCTTTTATGTT+TGG - tig0030819:28643-28662 Msa1444750:intron 35.0%
! TTGCTGGACCTTTTATGTTT+GGG - tig0030819:28644-28663 Msa1444750:intron 35.0%
! ATTAAGCACCCTTTTGTCAA+AGG + tig0030819:28840-28859 None:intergenic 35.0%
! GGTGTTTTCTCTCATATGAA+GGG - tig0030819:28947-28966 Msa1444750:intron 35.0%
CACTATAAATGCTTGGCATT+TGG - tig0030819:28980-28999 Msa1444750:intron 35.0%
CTCATGCATTAGAGAATTGA+TGG + tig0030819:29073-29092 None:intergenic 35.0%
ATACTGTTAGGAGATACGTT+TGG - tig0030819:29121-29140 Msa1444750:intron 35.0%
CCAATATACAGTTATTGGTG+GGG - tig0030819:29216-29235 Msa1444750:CDS 35.0%
CAATATACAGTTATTGGTGG+GGG - tig0030819:29217-29236 Msa1444750:CDS 35.0%
ATGTAATCTCAAAGCGTATG+GGG + tig0030819:29272-29291 None:intergenic 35.0%
CATGTAATCTCAAAGCGTAT+GGG + tig0030819:29273-29292 None:intergenic 35.0%
AGTCATCTTCATCATCTTCT+TGG - tig0030819:29392-29411 Msa1444750:intron 35.0%
TATTGTTGGAACTTGTGTTG+GGG + tig0030819:29437-29456 None:intergenic 35.0%
GCTTGTGTTAAGTTTACATG+TGG - tig0030819:29615-29634 Msa1444750:intron 35.0%
CATAGCCAAACTTCATAAGA+TGG + tig0030819:30337-30356 None:intergenic 35.0%
! CAATTGACAAAAGTGTGTCA+TGG - tig0030819:30529-30548 Msa1444750:intron 35.0%
! TGTCATGGTTTGATGATAGT+TGG - tig0030819:30544-30563 Msa1444750:intron 35.0%
TTGACAAGGAATGATGTCTT+TGG - tig0030819:30696-30715 Msa1444750:intron 35.0%
TGAAGACATTATTAGGGATG+TGG - tig0030819:30737-30756 Msa1444750:intron 35.0%
TGACAATAGATAACATCCCA+AGG - tig0030819:30871-30890 Msa1444750:intron 35.0%
GACAATAGATAACATCCCAA+GGG - tig0030819:30872-30891 Msa1444750:intron 35.0%
ACAATAGATAACATCCCAAG+GGG - tig0030819:30873-30892 Msa1444750:intron 35.0%
ACCATAAGAAGAAAAACGGT+AGG - tig0030819:30909-30928 Msa1444750:intron 35.0%
!! TCCTACCGTTTTTCTTCTTA+TGG + tig0030819:30913-30932 None:intergenic 35.0%
TTTGCTGGAATGCATACTTA+TGG - tig0030819:30967-30986 Msa1444750:intron 35.0%
TTGCTGGAATGCATACTTAT+GGG - tig0030819:30968-30987 Msa1444750:intron 35.0%
CTCACATAGGTAGACTATAT+CGG + tig0030819:31000-31019 None:intergenic 35.0%
ACCTATGTGAGAATGAAGTT+TGG - tig0030819:31009-31028 Msa1444750:intron 35.0%
GAAAAGGGATATATGACACA+AGG - tig0030819:31073-31092 Msa1444750:intron 35.0%
TCATTCCCAAATAGTATGGT+AGG + tig0030819:31201-31220 None:intergenic 35.0%
AATTCCATGCCTTCAGATAA+TGG + tig0030819:31267-31286 None:intergenic 35.0%
! ATTAAGCACCCTTTTGTCAA+AGG + tig0030819:28840-28859 None:intergenic 35.0%
! GGTGTTTTCTCTCATATGAA+GGG - tig0030819:28947-28966 Msa1444750:intron 35.0%
CACTATAAATGCTTGGCATT+TGG - tig0030819:28980-28999 Msa1444750:intron 35.0%
CTCATGCATTAGAGAATTGA+TGG + tig0030819:29073-29092 None:intergenic 35.0%
ATACTGTTAGGAGATACGTT+TGG - tig0030819:29121-29140 Msa1444750:intron 35.0%
CCAATATACAGTTATTGGTG+GGG - tig0030819:29216-29235 Msa1444750:CDS 35.0%
CAATATACAGTTATTGGTGG+GGG - tig0030819:29217-29236 Msa1444750:CDS 35.0%
ATCGAACCTAAAGGTTAGTA+TGG - tig0030819:29243-29262 Msa1444750:CDS 35.0%
ATGTAATCTCAAAGCGTATG+GGG + tig0030819:29272-29291 None:intergenic 35.0%
CATGTAATCTCAAAGCGTAT+GGG + tig0030819:29273-29292 None:intergenic 35.0%
AGTCATCTTCATCATCTTCT+TGG - tig0030819:29392-29411 Msa1444750:intron 35.0%
AAACTGTTGGAACTTGTGTT+GGG + tig0030819:32070-32089 None:intergenic 35.0%
TAAACTGTTGGAACTTGTGT+TGG + tig0030819:32071-32090 None:intergenic 35.0%
TTGGCAACCATTTGAATCAT+AGG - tig0030819:32153-32172 Msa1444750:intron 35.0%
! ATTGGTGACATTCTAGACAT+TGG - tig0030819:32448-32467 Msa1444750:intron 35.0%
AGTAAGCTCAAGATTTCTTG+CGG - tig0030819:32483-32502 Msa1444750:intron 35.0%
! TGTAAAAGAAGCCTTGTGTA+TGG - tig0030819:32575-32594 Msa1444750:intron 35.0%
TCATGTACATACCATACACA+AGG + tig0030819:32589-32608 None:intergenic 35.0%
GATTGATATGTTTGTTCCAG+GGG - tig0030819:32614-32633 Msa1444750:intron 35.0%
GCAGCATTCTACGAATTTAA+CGG + tig0030819:32816-32835 None:intergenic 35.0%
AATTGCAAGATTCGTTTCCT+AGG + tig0030819:32996-33015 None:intergenic 35.0%
AGCCATAGTGAATGTAGTAA+AGG - tig0030819:33216-33235 Msa1444750:intron 35.0%
! GATAGCTTTTCCCTATATTG+TGG - tig0030819:33457-33476 Msa1444750:intron 35.0%
TTCATCAATGTAAACAGGAC+AGG + tig0030819:33835-33854 Msa1444760:intron 35.0%
TGCTCTTCATCAATGTAAAC+AGG + tig0030819:33840-33859 Msa1444760:intron 35.0%
AAGTAGTACTCGTCAAGAAA+GGG + tig0030819:33868-33887 Msa1444760:intron 35.0%
AATCAATTCTTACCAACCCT+AGG - tig0030819:33935-33954 Msa1444750:intron 35.0%
AATCCCAAGATGTTTCATTG+AGG + tig0030819:33985-34004 Msa1444760:intron 35.0%
CTGTGAACATTATCCAATCT+TGG - tig0030819:34297-34316 Msa1444750:CDS 35.0%
! CTTGTATTGACAACCAAGAT+TGG + tig0030819:34313-34332 Msa1444760:CDS 35.0%
TGACCCAAATTCCACTGTTT+GGG + tig0030819:28458-28477 None:intergenic 40.0%
TTGACCCAAATTCCACTGTT+TGG + tig0030819:28459-28478 None:intergenic 40.0%
! CAGTCAAAAGACGTTTTTGC+TGG - tig0030819:28628-28647 Msa1444750:CDS 40.0%
! GGGTGTTTTCTCTCATATGA+AGG - tig0030819:28946-28965 Msa1444750:intron 40.0%
CTAATGCATGAGTGAATTGC+TGG - tig0030819:29081-29100 Msa1444750:intron 40.0%
AGGAACTCATAGTATCCTGA+AGG - tig0030819:29166-29185 Msa1444750:intron 40.0%
GGAACTCATAGTATCCTGAA+GGG - tig0030819:29167-29186 Msa1444750:intron 40.0%
GAACTCATAGTATCCTGAAG+GGG - tig0030819:29168-29187 Msa1444750:intron 40.0%
TGGATGCAATAAGGAATGAC+CGG + tig0030819:29199-29218 None:intergenic 40.0%
CCCCACCAATAACTGTATAT+TGG + tig0030819:29219-29238 None:intergenic 40.0%
GGGTTGTCATACTAACCTTT+AGG + tig0030819:29252-29271 None:intergenic 40.0%
GCATGTAATCTCAAAGCGTA+TGG + tig0030819:29274-29293 None:intergenic 40.0%
ATTGTTGGAACTTGTGTTGG+GGG + tig0030819:29436-29455 None:intergenic 40.0%
ACTTGATGCTACTCAAGTGT+GGG + tig0030819:30805-30824 None:intergenic 40.0%
ACTTGAGTAGCATCAAGTCT+TGG - tig0030819:30807-30826 Msa1444750:intron 40.0%
CTTGAGTAGCATCAAGTCTT+GGG - tig0030819:30808-30827 Msa1444750:intron 40.0%
! TCCAAGTACTTTTACCCCTT+GGG + tig0030819:30890-30909 None:intergenic 40.0%
AGAAGAAAAACGGTAGGATG+AGG - tig0030819:30915-30934 Msa1444750:intron 40.0%
! GGATGAGGTTTTCCTCTTAA+TGG - tig0030819:30930-30949 Msa1444750:intron 40.0%
TGCTGGAATGCATACTTATG+GGG - tig0030819:30969-30988 Msa1444750:intron 40.0%
GCCAAACTTCATTCTCACAT+AGG + tig0030819:31013-31032 None:intergenic 40.0%
AGCTTGCCTACCATACTATT+TGG - tig0030819:31192-31211 Msa1444750:intron 40.0%
GCTTGCCTACCATACTATTT+GGG - tig0030819:31193-31212 Msa1444750:intron 40.0%
TCGCTCATTCCCAAATAGTA+TGG + tig0030819:31205-31224 None:intergenic 40.0%
GATACCATTATCTGAAGGCA+TGG - tig0030819:31260-31279 Msa1444750:intron 40.0%
! ATCTGAAGGCATGGAATTTC+CGG - tig0030819:31269-31288 Msa1444750:intron 40.0%
! GGGTGTTTTCTCTCATATGA+AGG - tig0030819:28946-28965 Msa1444750:intron 40.0%
CTAATGCATGAGTGAATTGC+TGG - tig0030819:29081-29100 Msa1444750:intron 40.0%
AGGAACTCATAGTATCCTGA+AGG - tig0030819:29166-29185 Msa1444750:intron 40.0%
GGAACTCATAGTATCCTGAA+GGG - tig0030819:29167-29186 Msa1444750:intron 40.0%
GAACTCATAGTATCCTGAAG+GGG - tig0030819:29168-29187 Msa1444750:intron 40.0%
TGGATGCAATAAGGAATGAC+CGG + tig0030819:29199-29218 None:intergenic 40.0%
CCCCACCAATAACTGTATAT+TGG + tig0030819:29219-29238 None:intergenic 40.0%
GCATGTAATCTCAAAGCGTA+TGG + tig0030819:29274-29293 None:intergenic 40.0%
AACTGTTGGAACTTGTGTTG+GGG + tig0030819:32069-32088 None:intergenic 40.0%
TCTAGACATTGGATGTTCTG+TGG - tig0030819:32459-32478 Msa1444750:intron 40.0%
CTAGACATTGGATGTTCTGT+GGG - tig0030819:32460-32479 Msa1444750:intron 40.0%
TGAGCCACAGCTAGAAAATA+GGG + tig0030819:32652-32671 None:intergenic 40.0%
GAATTTAACGGAGGACTAAG+GGG + tig0030819:32804-32823 None:intergenic 40.0%
CGAATTTAACGGAGGACTAA+GGG + tig0030819:32805-32824 None:intergenic 40.0%
ACGAATTTAACGGAGGACTA+AGG + tig0030819:32806-32825 None:intergenic 40.0%
GCATTCTACGAATTTAACGG+AGG + tig0030819:32813-32832 None:intergenic 40.0%
! CGTTCAGCTGTATGTTGTTT+AGG + tig0030819:33055-33074 None:intergenic 40.0%
AACAACATACAGCTGAACGA+TGG - tig0030819:33056-33075 Msa1444750:intron 40.0%
TACTAGAATCTGCGTCTAGT+AGG + tig0030819:33605-33624 Msa1444760:intron 40.0%
CAAGTAGTACTCGTCAAGAA+AGG + tig0030819:33869-33888 Msa1444760:intron 40.0%
CGAGTACTACTTGACTGATA+TGG - tig0030819:33876-33895 Msa1444750:intron 40.0%
TGATATGGACCAAACACTGA+AGG - tig0030819:33891-33910 Msa1444750:intron 40.0%
TGTGCCTCAATGAAACATCT+TGG - tig0030819:33978-33997 Msa1444750:intron 40.0%
GTGCCTCAATGAAACATCTT+GGG - tig0030819:33979-33998 Msa1444750:intron 40.0%
TAGAATGGATGAGCAGCTTA+AGG - tig0030819:34208-34227 Msa1444750:intron 40.0%
AGAATGGATGAGCAGCTTAA+GGG - tig0030819:34209-34228 Msa1444750:intron 40.0%
CATATCTTGGATGGAAGCCA+AGG + tig0030819:28596-28615 None:intergenic 45.0%
CTTGGCATTTGGGCATTAGT+TGG - tig0030819:28991-29010 Msa1444750:intron 45.0%
! GTTAGGAGATACGTTTGGTG+TGG - tig0030819:29126-29145 Msa1444750:intron 45.0%
TGGTTGTGCAATACACGTCA+AGG - tig0030819:29146-29165 Msa1444750:intron 45.0%
TCATCCATGACTACGGTGAA+CGG - tig0030819:29527-29546 Msa1444750:intron 45.0%
TTTACCGTTCACCGTAGTCA+TGG + tig0030819:29534-29553 None:intergenic 45.0%
GACTTGATGCTACTCAAGTG+TGG + tig0030819:30806-30825 None:intergenic 45.0%
GCATCAAGTCTTGGGTTCAA+TGG - tig0030819:30816-30835 Msa1444750:intron 45.0%
!! TCCCAAGGGGTAAAAGTACT+TGG - tig0030819:30886-30905 Msa1444750:intron 45.0%
! GTCCAAGTACTTTTACCCCT+TGG + tig0030819:30891-30910 None:intergenic 45.0%
AATGAAGTTTGGCCGCTTCA+CGG - tig0030819:31020-31039 Msa1444750:intron 45.0%
CGCGAGATACCATTATCTGA+AGG - tig0030819:31255-31274 Msa1444750:intron 45.0%
! TGAAAATGGTGGGGGATTGT+TGG - tig0030819:31312-31331 Msa1444750:intron 45.0%
CTTGGCATTTGGGCATTAGT+TGG - tig0030819:28991-29010 Msa1444750:intron 45.0%
! GTTAGGAGATACGTTTGGTG+TGG - tig0030819:29126-29145 Msa1444750:intron 45.0%
TGGTTGTGCAATACACGTCA+AGG - tig0030819:29146-29165 Msa1444750:intron 45.0%
GGGTTGCCATACTAACCTTT+AGG + tig0030819:31884-31903 None:intergenic 45.0%
ACTGTTGGAACTTGTGTTGG+GGG + tig0030819:32068-32087 None:intergenic 45.0%
!! CATTGACTTAGTAGCAGCCT+CGG + tig0030819:32314-32333 None:intergenic 45.0%
TCTTCTACTGATGAAGCGGT+AGG + tig0030819:32352-32371 None:intergenic 45.0%
CGCTTCTTCTACTGATGAAG+CGG + tig0030819:32356-32375 None:intergenic 45.0%
CGCAGATAATGCGTGACAAT+TGG - tig0030819:32377-32396 Msa1444750:intron 45.0%
TCACAATGACATTGGCCGTA+GGG + tig0030819:32516-32535 None:intergenic 45.0%
!!! GTCACCCTATTTTCTAGCTG+TGG - tig0030819:32645-32664 Msa1444750:intron 45.0%
CTGAGCCACAGCTAGAAAAT+AGG + tig0030819:32653-32672 None:intergenic 45.0%
GCTCAGCATAAGGAAAAGAG+CGG - tig0030819:32667-32686 Msa1444750:intron 45.0%
ACATGCAAATGGGGAAGACA+CGG - tig0030819:32720-32739 Msa1444750:intron 45.0%
! GTTTAGGACTTGTGACTTGC+AGG + tig0030819:33039-33058 None:intergenic 45.0%
ACATTCACTATGGCTCTTGC+AGG + tig0030819:33211-33230 None:intergenic 45.0%
! ACCTGTAGGACCTTTGACTT+TGG + tig0030819:33379-33398 Msa1444760:CDS 45.0%
AACCAGCTTCCTTCAGTGTT+TGG + tig0030819:33903-33922 Msa1444760:intron 45.0%
GAATGGATGAGCAGCTTAAG+GGG - tig0030819:34210-34229 Msa1444750:intron 45.0%
GAGGAGAGAGAAAACTGTCG+CGG - tig0030819:28160-28179 Msa1444750:three_prime_UTR 50.0%
AGAAGGAGAGAGGAGAGACA+CGG - tig0030819:28238-28257 Msa1444750:three_prime_UTR 50.0%
! GTGGGTTGAGTTTCCACCAT+TGG + tig0030819:30787-30806 None:intergenic 50.0%
AACCCTTGAACTCCGTGAAG+CGG + tig0030819:31035-31054 None:intergenic 50.0%
CGAGGCTGCTACTAAGTCAA+TGG - tig0030819:32312-32331 Msa1444750:intron 50.0%
TCTTGCGGACAAGTTCCCTA+CGG - tig0030819:32498-32517 Msa1444750:intron 50.0%
CTCACAATGACATTGGCCGT+AGG + tig0030819:32517-32536 None:intergenic 50.0%
TCTAGCTGTGGCTCAGCATA+AGG - tig0030819:32657-32676 Msa1444750:intron 50.0%
CATGCAAATGGGGAAGACAC+GGG - tig0030819:32721-32740 Msa1444750:intron 50.0%
!! AGGAAGCATTCCGTCTCCTT+CGG - tig0030819:33236-33255 Msa1444750:intron 50.0%
! CCTTTGACTTTGGCTGCAGA+AGG + tig0030819:33369-33388 Msa1444760:CDS 50.0%
CCTTCTGCAGCCAAAGTCAA+AGG - tig0030819:33366-33385 Msa1444750:intron 50.0%
GCCAAAGTCAAAGGTCCTAC+AGG - tig0030819:33375-33394 Msa1444750:intron 50.0%
GACCAAACACTGAAGGAAGC+TGG - tig0030819:33898-33917 Msa1444750:intron 50.0%
TAAAGTCACGTGCCTAGGGT+TGG + tig0030819:33950-33969 Msa1444760:intron 50.0%
CCGTTAAAGTCACGTGCCTA+GGG + tig0030819:33954-33973 Msa1444760:intron 50.0%
CCCTAGGCACGTGACTTTAA+CGG - tig0030819:33951-33970 Msa1444750:intron 50.0%
GAGAGAAAACTGTCGCGGAG+AGG - tig0030819:28165-28184 Msa1444750:three_prime_UTR 55.0%
CGGAGAGGAGAGACAGCAAA+CGG - tig0030819:28180-28199 Msa1444750:three_prime_UTR 55.0%
AGAGGAGAGACAGCAAACGG+CGG - tig0030819:28183-28202 Msa1444750:three_prime_UTR 55.0%
GTCTCTCCTCTCTCCTTCTG+CGG + tig0030819:28237-28256 None:intergenic 55.0%
AGAGAGGAGAGACACGGTGA+AGG - tig0030819:28244-28263 Msa1444750:three_prime_UTR 55.0%
GTATCCTGAAGGGGATTCGC+CGG - tig0030819:29177-29196 Msa1444750:intron 55.0%
TGGGGGCGAATCGAACCTAA+AGG - tig0030819:29234-29253 Msa1444750:CDS 55.0%
GTATCCTGAAGGGGATTCGC+CGG - tig0030819:29177-29196 Msa1444750:intron 55.0%
TGGGGGCGAATCGAACCTAA+AGG - tig0030819:29234-29253 Msa1444750:CDS 55.0%
AGGGTGACATATCTAGCCCC+TGG + tig0030819:32633-32652 None:intergenic 55.0%
GTCATAGCAAACGTGCCTCC+AGG + tig0030819:33262-33281 None:intergenic 55.0%
GCCGTTAAAGTCACGTGCCT+AGG + tig0030819:33955-33974 Msa1444760:intron 55.0%
TCTCCTCTCTCCTTCTGCGG+CGG + tig0030819:28234-28253 None:intergenic 60.0%
ATGACCGGCGAATCCCCTTC+AGG + tig0030819:29184-29203 None:intergenic 60.0%
TGGCCGCTTCACGGAGTTCA+AGG - tig0030819:31029-31048 Msa1444750:intron 60.0%
GGCCGCTTCACGGAGTTCAA+GGG - tig0030819:31030-31049 Msa1444750:intron 60.0%
ATGACCGGCGAATCCCCTTC+AGG + tig0030819:29184-29203 None:intergenic 60.0%
ATAGGCAGCAGCAGAAGCCG+AGG - tig0030819:32294-32313 Msa1444750:intron 60.0%
GGAGAGACAGCAAACGGCGG+CGG - tig0030819:28186-28205 Msa1444750:three_prime_UTR 65.0%
!! GAGAGAAGCACCGCCGCAGA+AGG - tig0030819:28221-28240 Msa1444750:three_prime_UTR 65.0%
GCATTCCGTCTCCTTCGGCC+TGG - tig0030819:33241-33260 Msa1444750:intron 65.0%
TTCCGTCTCCTTCGGCCTGG+AGG - tig0030819:33244-33263 Msa1444750:intron 65.0%
TGCCTCCAGGCCGAAGGAGA+CGG + tig0030819:33249-33268 None:intergenic 65.0%
CAAACGTGCCTCCAGGCCGA+AGG + tig0030819:33255-33274 None:intergenic 65.0%
ACAGCAAACGGCGGCGGCGA+CGG - tig0030819:28192-28211 Msa1444750:three_prime_UTR 70.0%
GCACCGCCGCAGAAGGAGAG+AGG - tig0030819:28228-28247 Msa1444750:three_prime_UTR 70.0%
! AAACGGCGGCGGCGACGGCG+AGG - tig0030819:28197-28216 Msa1444750:three_prime_UTR 80.0%
Chromosome Type Strat End Strand Name
tig0030819 gene 28146 34332 28146 ID=Msa1444750;Name=Msa1444750
tig0030819 mRNA 28146 34332 28146 ID=Msa1444750-mRNA-1;Parent=Msa1444750;Name=Msa1444750-mRNA-1;_AED=0.39;_eAED=0.46;_QI=0|0.4|0.66|0.83|1|1|6|342|258
tig0030819 exon 28146 28655 28146 ID=Msa1444750-mRNA-1:exon:14657;Parent=Msa1444750-mRNA-1
tig0030819 exon 28721 28726 28721 ID=Msa1444750-mRNA-1:exon:14656;Parent=Msa1444750-mRNA-1
tig0030819 exon 29187 29282 29187 ID=Msa1444750-mRNA-1:exon:14655;Parent=Msa1444750-mRNA-1
tig0030819 exon 29692 29844 29692 ID=Msa1444750-mRNA-1:exon:14654;Parent=Msa1444750-mRNA-1
tig0030819 exon 29947 30180 29947 ID=Msa1444750-mRNA-1:exon:14653;Parent=Msa1444750-mRNA-1
tig0030819 exon 34213 34332 34213 ID=Msa1444750-mRNA-1:exon:14652;Parent=Msa1444750-mRNA-1
tig0030819 CDS 34213 34332 34213 ID=Msa1444750-mRNA-1:cds;Parent=Msa1444750-mRNA-1
tig0030819 CDS 29947 30180 29947 ID=Msa1444750-mRNA-1:cds;Parent=Msa1444750-mRNA-1
tig0030819 CDS 29692 29844 29692 ID=Msa1444750-mRNA-1:cds;Parent=Msa1444750-mRNA-1
tig0030819 CDS 29187 29282 29187 ID=Msa1444750-mRNA-1:cds;Parent=Msa1444750-mRNA-1
tig0030819 CDS 28721 28726 28721 ID=Msa1444750-mRNA-1:cds;Parent=Msa1444750-mRNA-1
tig0030819 CDS 28488 28655 28488 ID=Msa1444750-mRNA-1:cds;Parent=Msa1444750-mRNA-1
tig0030819 three_prime_UTR 28146 28487 28146 ID=Msa1444750-mRNA-1:three_prime_utr;Parent=Msa1444750-mRNA-1
Gene Sequence

>Msa1444750

ATGAAAACGGCGGCGAGGAGAGAGAAAACTGTCGCGGAGAGGAGAGACAGCAAACGGCGGCGGCGACGGCGAGGAGAGAGAAGCACCGCCGCAGAAGGAGAGAGGAGAGACACGGTGAAGGCAGCAGCAGAAGCCGAGGCTGCTACTAAGTCAATGGCAAGACGAGCGATTCCTACCGCTTCATCAGTAGAAGAAGCGACGCAGATAATGCGTGACAATTGGCTTAATGCAATTGAACAACATCATCTACAGCATTCACAAACATCTATGATTGGTGACATTCTAGACATTGGATGTTCTGTGGGAGTAAGCTCAAGATTTCTTGCGGACAAGTTCCCTACGGCCAATGTCATTGGGCTAGATATGTCACCCTATTTTCTAGCTGTGGCTCAGCATAAGGAAAAGAGCGGAACGCCTAGAAAAAATCCTATAAAATGGATACATGCAAATGGGGAAGACACGGGCTTGCCTTCTAAATCATTTGATCTTGTGTCTATTTCTTATGTGTTTCATGAATGTCCTGCAAGAGCCATAGTGAATGTAGTAAAGGAAGCATTCCGTCTCCTTCGGCCTGGAGGCACGTTTGCTATGACAGATAATTCGTTTATGGAGTTGTCTCCTGTCCTGTTTACATTGATGAAGAGCACAGAACCCTTTCTTGACGAGTACTACTTGACTGATATGGACCAAACACTGAAGGAAGCTGGTTTCGTGAACATAAAATCAATTCTTACCAACCCTAGGCACGTGACTTTAACGGCTACTGTGCCTCAATGA

Protein sequence

>Msa1444750

MKTAARREKTVAERRDSKRRRRRRGERSTAAEGERRDTVKAAAEAEAATKSMARRAIPTASSVEEATQIMRDNWLNAIEQHHLQHSQTSMIGDILDIGCSVGVSSRFLADKFPTANVIGLDMSPYFLAVAQHKEKSGTPRKNPIKWIHANGEDTGLPSKSFDLVSISYVFHECPARAIVNVVKEAFRLLRPGGTFAMTDNSFMELSPVLFTLMKSTEPFLDEYYLTDMDQTLKEAGFVNIKSILTNPRHVTLTATVPQ*