AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0624240


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0624240 MtrunA17_Chr8g0358961 94.273 227 13 0 1 227 1 227 1.10e-163 451
Msa0624240 MtrunA17_Chr4g0058821 40.556 180 98 4 39 215 23 196 1.08e-31 115
Msa0624240 MtrunA17_Chr8g0368391 33.654 208 124 5 13 215 5 203 5.27e-30 110
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0624240 AT1G17100.1 60.396 202 75 2 25 221 30 231 4.58e-89 262
Msa0624240 AT1G78450.1 48.214 224 103 4 4 222 1 216 1.76e-70 215
Msa0624240 AT1G78460.1 39.827 231 113 5 4 220 1 219 5.43e-49 160

Find 77 sgRNAs with CRISPR-Local

Find 256 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAGAATGGTAAATTGATAAA+AGG 0.212029 4_3:+2208397 None:intergenic
GACGTTATAATTCGTCTGTT+TGG 0.282437 4_3:-2208182 Msa0624240:CDS
AAGCTACTAGAACTGGTTTC+CGG 0.298026 4_3:-2208122 Msa0624240:CDS
TAGGCTATTTGATTACATTC+AGG 0.303343 4_3:-2207118 Msa0624240:CDS
TCTTATCTCAATTTCATTAT+CGG 0.305130 4_3:-2208292 Msa0624240:CDS
TAATTCAGTAATAAGTGTTT+TGG 0.305738 4_3:-2206480 Msa0624240:three_prime_UTR
TTCTTGTTTGATCTGGAAAA+TGG 0.306508 4_3:-2206718 Msa0624240:CDS
GGATTTGCTTGGTTCACTTT+TGG 0.319811 4_3:+2206985 None:intergenic
TGAACATGAAGACCCTTTGC+AGG 0.347285 4_3:+2206958 None:intergenic
AATGTCTTGAATAGGAGAAT+TGG 0.347748 4_3:+2208155 None:intergenic
AACTTACATAACATACTATC+TGG 0.380641 4_3:+2206648 None:intergenic
CTTATCTCAATTTCATTATC+GGG 0.383040 4_3:-2208291 Msa0624240:CDS
CTTGTTGAAGCTACTAGAAC+TGG 0.386778 4_3:-2208129 Msa0624240:CDS
ACAAATGAAGACTCACAAAA+TGG 0.387846 4_3:+2207024 None:intergenic
ACCCTATTATCGTATTCAAA+AGG 0.389319 4_3:+2206754 None:intergenic
AGCTTCTATGACATCATAGT+TGG 0.390370 4_3:+2208224 None:intergenic
CTGAAGCATGACCAGCTCTA+TGG 0.399888 4_3:+2206803 None:intergenic
ACAAGAGAAATGTCTTGAAT+AGG 0.403479 4_3:+2208147 None:intergenic
GATATGGTTCTTGTTTGATC+TGG 0.407224 4_3:-2206725 Msa0624240:CDS
CCCTATTATCGTATTCAAAA+GGG 0.409052 4_3:+2206755 None:intergenic
ACAGCCATGGATTGCATGCT+TGG 0.416699 4_3:+2208351 None:intergenic
AGAATGGTAAATTGATAAAA+GGG 0.418250 4_3:+2208398 None:intergenic
TACTATCTGGAATTTGTGAA+TGG 0.426802 4_3:+2206661 None:intergenic
GAATTAATTGATCATGCCTT+CGG 0.437522 4_3:+2206268 None:intergenic
TTCTCAAATATTGATGTGGC+AGG 0.445417 4_3:-2206248 Msa0624240:three_prime_UTR
AGGCTATTTGATTACATTCA+GGG 0.450840 4_3:-2207117 Msa0624240:CDS
TGAAGACCCTTTGCAGGTGG+TGG 0.452104 4_3:+2206964 None:intergenic
GGAGTTTGTGAATTATGTTA+AGG 0.453586 4_3:+2208372 None:intergenic
TTGCAGGTGGTGGATTTGCT+TGG 0.453762 4_3:+2206974 None:intergenic
AACTATGATGTCATAGAAGC+TGG 0.463929 4_3:-2208222 Msa0624240:CDS
GCGTTGAAGGACAGTATTGC+CGG 0.472222 4_3:-2206856 Msa0624240:CDS
ATAATAGGGTGAATGAGATA+TGG 0.475621 4_3:-2206741 Msa0624240:CDS
TGAGCTAGCATCAGCGTTGA+AGG 0.486594 4_3:-2206869 Msa0624240:CDS
GATGTCATAGAAGCTGGAAA+TGG 0.490076 4_3:-2208216 Msa0624240:CDS
TGAATTGATAAATAAAGTGC+AGG 0.491035 4_3:-2206568 Msa0624240:three_prime_UTR
GCAGAATCCCATATAAATGA+TGG 0.499567 4_3:+2206219 None:intergenic
AGCAAATCCACCACCTGCAA+AGG 0.503511 4_3:-2206971 Msa0624240:CDS
CCATGGTTGCTTGGAAGGAA+AGG 0.505085 4_3:+2206359 None:intergenic
TATGCAGCAGTTAAACAGTT+TGG 0.507098 4_3:-2206919 Msa0624240:CDS
AGGGTCTTCATGTTCAAAGA+TGG 0.509198 4_3:-2206951 Msa0624240:CDS
GCAGCAGTTAAACAGTTTGG+TGG 0.512495 4_3:-2206916 Msa0624240:CDS
TAATTGATCATGCCTTCGGT+TGG 0.517033 4_3:+2206272 None:intergenic
TGTAGGTTGCCATGGTTGCT+TGG 0.530659 4_3:+2206350 None:intergenic
GGTTGCCATGGTTGCTTGGA+AGG 0.534058 4_3:+2206354 None:intergenic
GGTAAGACTTCAGAGAGAAC+AGG 0.536541 4_3:+2207057 None:intergenic
AACTCCAAGCATGCAATCCA+TGG 0.545237 4_3:-2208355 Msa0624240:exon
GGACACTCTATGCGTTTGCA+TGG 0.549178 4_3:+2208246 None:intergenic
GCAAATCCACCACCTGCAAA+GGG 0.549447 4_3:-2206970 Msa0624240:CDS
GCTTCTATGACATCATAGTT+GGG 0.553146 4_3:+2208225 None:intergenic
TCACAAAATGGTCCATCACT+TGG 0.562399 4_3:+2207036 None:intergenic
TCTGAAGTCTTACCAAGTGA+TGG 0.564116 4_3:-2207048 Msa0624240:CDS
TGCCTTAAAATCTTTCCAAG+TGG 0.564221 4_3:-2206425 Msa0624240:three_prime_UTR
GGAGAAAGTGTAGGTTGCCA+TGG 0.567270 4_3:+2206342 None:intergenic
GGCTATTTGATTACATTCAG+GGG 0.574090 4_3:-2207116 Msa0624240:CDS
TGTTGTGGTGGTTACAGCCA+TGG 0.575258 4_3:+2208338 None:intergenic
AGGCTCACACTTGGTACCAT+CGG 0.585741 4_3:+2206379 None:intergenic
CTCACACTTGGTACCATCGG+TGG 0.588332 4_3:+2206382 None:intergenic
AGCAGAAGACCACTTAGTAC+CGG 0.588835 4_3:+2206837 None:intergenic
AATTATGTTAAGGAACAGAA+TGG 0.589911 4_3:+2208382 None:intergenic
TGGAAGGAAAGGCTCACACT+TGG 0.591600 4_3:+2206370 None:intergenic
TTAATTCTCAAATATTGATG+TGG 0.595008 4_3:-2206252 Msa0624240:three_prime_UTR
ATTGAACAAAGCCATAGAGC+TGG 0.606780 4_3:-2206814 Msa0624240:CDS
TCACACTTGGTACCATCGGT+GGG 0.608306 4_3:+2206383 None:intergenic
CGATGACAAGGAGAAAGTGT+AGG 0.608595 4_3:+2206333 None:intergenic
TTTGTCAAAGATACAGATGT+TGG 0.611111 4_3:-2206892 Msa0624240:CDS
CCTTTCCTTCCAAGCAACCA+TGG 0.611308 4_3:-2206359 Msa0624240:three_prime_UTR
ACAGTATTGCCGGTACTAAG+TGG 0.612734 4_3:-2206846 Msa0624240:CDS
CAATATATTTGTCCAACCGA+AGG 0.614323 4_3:-2206284 Msa0624240:three_prime_UTR
ATGTTCCCTAAAATTCCACT+TGG 0.621066 4_3:+2206410 None:intergenic
CCTATTATCGTATTCAAAAG+GGG 0.621839 4_3:+2206756 None:intergenic
TATGGGATTCTGCTTTGTCG+CGG 0.622393 4_3:-2206209 Msa0624240:three_prime_UTR
CAGTGAGAGCTTCAATGTTG+TGG 0.636610 4_3:+2208323 None:intergenic
GGGAACATCAGTCCCACCGA+TGG 0.659685 4_3:-2206395 Msa0624240:three_prime_UTR
ATTGAATTGAATCGATGACA+AGG 0.668060 4_3:+2206321 None:intergenic
TGAGAGCTTCAATGTTGTGG+TGG 0.673155 4_3:+2208326 None:intergenic
CTACTAGAACTGGTTTCCGG+AGG 0.693581 4_3:-2208119 Msa0624240:intron
ACATGAAGACCCTTTGCAGG+TGG 0.699868 4_3:+2206961 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAGTTGAATACATATAAAA+GGG - chr4_3:2206731-2206750 Msa0624240:CDS 15.0%
!! AAAGTTGAATACATATAAAA+GGG - chr4_3:2206731-2206750 Msa0624240:CDS 15.0%
!! AGAATGGTAAATTGATAAAA+GGG + chr4_3:2206209-2206228 None:intergenic 20.0%
!! TCTTATCTCAATTTCATTAT+CGG - chr4_3:2206312-2206331 Msa0624240:three_prime_UTR 20.0%
!!! AGTTTTTTCAGTAATAGTTT+AGG - chr4_3:2206527-2206546 Msa0624240:three_prime_UTR 20.0%
!! GAAAGTTGAATACATATAAA+AGG - chr4_3:2206730-2206749 Msa0624240:CDS 20.0%
!! AATGTGAAATGATTTATACT+TGG - chr4_3:2207187-2207206 Msa0624240:intron 20.0%
!!! AAATTAATCATCTCTAGAAT+TGG + chr4_3:2207264-2207283 None:intergenic 20.0%
!!! TCAATCTTTTTCTTTTTCTT+AGG - chr4_3:2207467-2207486 Msa0624240:intron 20.0%
!!! TAATTCAGTAATAAGTGTTT+TGG - chr4_3:2208124-2208143 Msa0624240:CDS 20.0%
!! TTAATTCTCAAATATTGATG+TGG - chr4_3:2208352-2208371 Msa0624240:exon 20.0%
!! AGAATGGTAAATTGATAAAA+GGG + chr4_3:2206209-2206228 None:intergenic 20.0%
!! TCTTATCTCAATTTCATTAT+CGG - chr4_3:2206312-2206331 Msa0624240:three_prime_UTR 20.0%
!!! AGTTTTTTCAGTAATAGTTT+AGG - chr4_3:2206527-2206546 Msa0624240:three_prime_UTR 20.0%
!! GAAAGTTGAATACATATAAA+AGG - chr4_3:2206730-2206749 Msa0624240:CDS 20.0%
!! AATGTGAAATGATTTATACT+TGG - chr4_3:2207187-2207206 Msa0624240:intron 20.0%
!!! AAATTAATCATCTCTAGAAT+TGG + chr4_3:2207264-2207283 None:intergenic 20.0%
!!! TCAATCTTTTTCTTTTTCTT+AGG - chr4_3:2207467-2207486 Msa0624240:intron 20.0%
!!! TAATTCAGTAATAAGTGTTT+TGG - chr4_3:2208124-2208143 Msa0624240:CDS 20.0%
!! TTAATTCTCAAATATTGATG+TGG - chr4_3:2208352-2208371 Msa0624240:exon 20.0%
!!! TGATAAAAGGGTTTTTTCTA+TGG + chr4_3:2206197-2206216 None:intergenic 25.0%
! CAGAATGGTAAATTGATAAA+AGG + chr4_3:2206210-2206229 None:intergenic 25.0%
! AATTATGTTAAGGAACAGAA+TGG + chr4_3:2206225-2206244 None:intergenic 25.0%
! CTTATCTCAATTTCATTATC+GGG - chr4_3:2206313-2206332 Msa0624240:three_prime_UTR 25.0%
! GTAAAAAAACAAATTACCTC+CGG + chr4_3:2206504-2206523 None:intergenic 25.0%
! TTTCAAATTATTAGCTGTGT+CGG + chr4_3:2206847-2206866 None:intergenic 25.0%
! TTTAGTGTAATTACAAGTGT+CGG - chr4_3:2206879-2206898 Msa0624240:CDS 25.0%
! AACTAATTCTAACTTGAAGT+TGG + chr4_3:2206979-2206998 None:intergenic 25.0%
!!! ACAATTGATTTTAGCATGTT+TGG + chr4_3:2207300-2207319 None:intergenic 25.0%
! ATGCTAAAATCAATTGTTTC+TGG - chr4_3:2207303-2207322 Msa0624240:intron 25.0%
! TGAACTTATTGATCATTCAT+TGG + chr4_3:2207373-2207392 None:intergenic 25.0%
!!! AAGTTTTAATGAAGTGTTTG+TGG - chr4_3:2207407-2207426 Msa0624240:intron 25.0%
! AACTTACATAACATACTATC+TGG + chr4_3:2207959-2207978 None:intergenic 25.0%
! TGAATTGATAAATAAAGTGC+AGG - chr4_3:2208036-2208055 Msa0624240:intron 25.0%
!!! TGATAAAAGGGTTTTTTCTA+TGG + chr4_3:2206197-2206216 None:intergenic 25.0%
! CAGAATGGTAAATTGATAAA+AGG + chr4_3:2206210-2206229 None:intergenic 25.0%
! AATTATGTTAAGGAACAGAA+TGG + chr4_3:2206225-2206244 None:intergenic 25.0%
! CTTATCTCAATTTCATTATC+GGG - chr4_3:2206313-2206332 Msa0624240:three_prime_UTR 25.0%
! GTAAAAAAACAAATTACCTC+CGG + chr4_3:2206504-2206523 None:intergenic 25.0%
! TTTCAAATTATTAGCTGTGT+CGG + chr4_3:2206847-2206866 None:intergenic 25.0%
! TTTAGTGTAATTACAAGTGT+CGG - chr4_3:2206879-2206898 Msa0624240:CDS 25.0%
! AACTAATTCTAACTTGAAGT+TGG + chr4_3:2206979-2206998 None:intergenic 25.0%
!!! ACAATTGATTTTAGCATGTT+TGG + chr4_3:2207300-2207319 None:intergenic 25.0%
! ATGCTAAAATCAATTGTTTC+TGG - chr4_3:2207303-2207322 Msa0624240:intron 25.0%
! TGAACTTATTGATCATTCAT+TGG + chr4_3:2207373-2207392 None:intergenic 25.0%
!!! AAGTTTTAATGAAGTGTTTG+TGG - chr4_3:2207407-2207426 Msa0624240:intron 25.0%
! AACTTACATAACATACTATC+TGG + chr4_3:2207959-2207978 None:intergenic 25.0%
! TGAATTGATAAATAAAGTGC+AGG - chr4_3:2208036-2208055 Msa0624240:intron 25.0%
GGAGTTTGTGAATTATGTTA+AGG + chr4_3:2206235-2206254 None:intergenic 30.0%
AATGTCTTGAATAGGAGAAT+TGG + chr4_3:2206452-2206471 None:intergenic 30.0%
ACAAGAGAAATGTCTTGAAT+AGG + chr4_3:2206460-2206479 None:intergenic 30.0%
!! GAGTTTGATTTTGACATGTT+TGG + chr4_3:2207034-2207053 None:intergenic 30.0%
GATCAAGTTTAGTAACTCTT+CGG + chr4_3:2207449-2207468 None:intergenic 30.0%
TAGGCTATTTGATTACATTC+AGG - chr4_3:2207486-2207505 Msa0624240:intron 30.0%
AGGCTATTTGATTACATTCA+GGG - chr4_3:2207487-2207506 Msa0624240:intron 30.0%
ACAAATGAAGACTCACAAAA+TGG + chr4_3:2207583-2207602 None:intergenic 30.0%
TTTGTCAAAGATACAGATGT+TGG - chr4_3:2207712-2207731 Msa0624240:intron 30.0%
CCTATTATCGTATTCAAAAG+GGG + chr4_3:2207851-2207870 None:intergenic 30.0%
CCCTATTATCGTATTCAAAA+GGG + chr4_3:2207852-2207871 None:intergenic 30.0%
! CCCTTTTGAATACGATAATA+GGG - chr4_3:2207849-2207868 Msa0624240:intron 30.0%
ACCCTATTATCGTATTCAAA+AGG + chr4_3:2207853-2207872 None:intergenic 30.0%
ATAATAGGGTGAATGAGATA+TGG - chr4_3:2207863-2207882 Msa0624240:intron 30.0%
! TTCTTGTTTGATCTGGAAAA+TGG - chr4_3:2207886-2207905 Msa0624240:intron 30.0%
! TACTATCTGGAATTTGTGAA+TGG + chr4_3:2207946-2207965 None:intergenic 30.0%
!! GTAATAAGTGTTTTGGATCT+TGG - chr4_3:2208131-2208150 Msa0624240:CDS 30.0%
! TTCCACTTGGAAAGATTTTA+AGG + chr4_3:2208184-2208203 None:intergenic 30.0%
! ATCTTTCCAAGTGGAATTTT+AGG - chr4_3:2208188-2208207 Msa0624240:CDS 30.0%
! TCTTTCCAAGTGGAATTTTA+GGG - chr4_3:2208189-2208208 Msa0624240:CDS 30.0%
ATTGAATTGAATCGATGACA+AGG + chr4_3:2208286-2208305 None:intergenic 30.0%
GAATTAATTGATCATGCCTT+CGG + chr4_3:2208339-2208358 None:intergenic 30.0%
! GTTTTCGCCATCATTTATAT+GGG - chr4_3:2208378-2208397 Msa0624240:five_prime_UTR 30.0%
GGAGTTTGTGAATTATGTTA+AGG + chr4_3:2206235-2206254 None:intergenic 30.0%
AATGTCTTGAATAGGAGAAT+TGG + chr4_3:2206452-2206471 None:intergenic 30.0%
ACAAGAGAAATGTCTTGAAT+AGG + chr4_3:2206460-2206479 None:intergenic 30.0%
!! GAGTTTGATTTTGACATGTT+TGG + chr4_3:2207034-2207053 None:intergenic 30.0%
GATCAAGTTTAGTAACTCTT+CGG + chr4_3:2207449-2207468 None:intergenic 30.0%
TAGGCTATTTGATTACATTC+AGG - chr4_3:2207486-2207505 Msa0624240:intron 30.0%
AGGCTATTTGATTACATTCA+GGG - chr4_3:2207487-2207506 Msa0624240:intron 30.0%
ACAAATGAAGACTCACAAAA+TGG + chr4_3:2207583-2207602 None:intergenic 30.0%
TTTGTCAAAGATACAGATGT+TGG - chr4_3:2207712-2207731 Msa0624240:intron 30.0%
CCTATTATCGTATTCAAAAG+GGG + chr4_3:2207851-2207870 None:intergenic 30.0%
CCCTATTATCGTATTCAAAA+GGG + chr4_3:2207852-2207871 None:intergenic 30.0%
! CCCTTTTGAATACGATAATA+GGG - chr4_3:2207849-2207868 Msa0624240:intron 30.0%
ACCCTATTATCGTATTCAAA+AGG + chr4_3:2207853-2207872 None:intergenic 30.0%
ATAATAGGGTGAATGAGATA+TGG - chr4_3:2207863-2207882 Msa0624240:intron 30.0%
! TTCTTGTTTGATCTGGAAAA+TGG - chr4_3:2207886-2207905 Msa0624240:intron 30.0%
! TACTATCTGGAATTTGTGAA+TGG + chr4_3:2207946-2207965 None:intergenic 30.0%
!! GTAATAAGTGTTTTGGATCT+TGG - chr4_3:2208131-2208150 Msa0624240:CDS 30.0%
! TTCCACTTGGAAAGATTTTA+AGG + chr4_3:2208184-2208203 None:intergenic 30.0%
! ATCTTTCCAAGTGGAATTTT+AGG - chr4_3:2208188-2208207 Msa0624240:CDS 30.0%
! TCTTTCCAAGTGGAATTTTA+GGG - chr4_3:2208189-2208208 Msa0624240:CDS 30.0%
ATTGAATTGAATCGATGACA+AGG + chr4_3:2208286-2208305 None:intergenic 30.0%
GAATTAATTGATCATGCCTT+CGG + chr4_3:2208339-2208358 None:intergenic 30.0%
! GTTTTCGCCATCATTTATAT+GGG - chr4_3:2208378-2208397 Msa0624240:five_prime_UTR 30.0%
GCTTCTATGACATCATAGTT+GGG + chr4_3:2206382-2206401 None:intergenic 35.0%
AGCTTCTATGACATCATAGT+TGG + chr4_3:2206383-2206402 None:intergenic 35.0%
AACTATGATGTCATAGAAGC+TGG - chr4_3:2206382-2206401 Msa0624240:three_prime_UTR 35.0%
GACGTTATAATTCGTCTGTT+TGG - chr4_3:2206422-2206441 Msa0624240:three_prime_UTR 35.0%
! TTAGTGTGTGTTTGGTTTCA+CGG + chr4_3:2207349-2207368 None:intergenic 35.0%
!! TCATTGGTTTAGTGTGTGTT+TGG + chr4_3:2207357-2207376 None:intergenic 35.0%
AGTTTAGTAACTCTTCGGAT+GGG + chr4_3:2207444-2207463 None:intergenic 35.0%
AAGTTTAGTAACTCTTCGGA+TGG + chr4_3:2207445-2207464 None:intergenic 35.0%
GGCTATTTGATTACATTCAG+GGG - chr4_3:2207488-2207507 Msa0624240:intron 35.0%
!!! CTGTCATCTCAATTTTTTGC+TGG + chr4_3:2207525-2207544 None:intergenic 35.0%
TATGCAGCAGTTAAACAGTT+TGG - chr4_3:2207685-2207704 Msa0624240:intron 35.0%
! CCCCTTTTGAATACGATAAT+AGG - chr4_3:2207848-2207867 Msa0624240:intron 35.0%
! GATATGGTTCTTGTTTGATC+TGG - chr4_3:2207879-2207898 Msa0624240:intron 35.0%
!! TAAGTGTTTTGGATCTTGGA+AGG - chr4_3:2208135-2208154 Msa0624240:CDS 35.0%
TGCCTTAAAATCTTTCCAAG+TGG - chr4_3:2208179-2208198 Msa0624240:CDS 35.0%
ATGTTCCCTAAAATTCCACT+TGG + chr4_3:2208197-2208216 None:intergenic 35.0%
CAATATATTTGTCCAACCGA+AGG - chr4_3:2208320-2208339 Msa0624240:CDS 35.0%
TTCTCAAATATTGATGTGGC+AGG - chr4_3:2208356-2208375 Msa0624240:exon 35.0%
! GGTTTTCGCCATCATTTATA+TGG - chr4_3:2208377-2208396 Msa0624240:five_prime_UTR 35.0%
GCAGAATCCCATATAAATGA+TGG + chr4_3:2208388-2208407 None:intergenic 35.0%
GCTTCTATGACATCATAGTT+GGG + chr4_3:2206382-2206401 None:intergenic 35.0%
AGCTTCTATGACATCATAGT+TGG + chr4_3:2206383-2206402 None:intergenic 35.0%
AACTATGATGTCATAGAAGC+TGG - chr4_3:2206382-2206401 Msa0624240:three_prime_UTR 35.0%
GACGTTATAATTCGTCTGTT+TGG - chr4_3:2206422-2206441 Msa0624240:three_prime_UTR 35.0%
! TTAGTGTGTGTTTGGTTTCA+CGG + chr4_3:2207349-2207368 None:intergenic 35.0%
!! TCATTGGTTTAGTGTGTGTT+TGG + chr4_3:2207357-2207376 None:intergenic 35.0%
AGTTTAGTAACTCTTCGGAT+GGG + chr4_3:2207444-2207463 None:intergenic 35.0%
AAGTTTAGTAACTCTTCGGA+TGG + chr4_3:2207445-2207464 None:intergenic 35.0%
GGCTATTTGATTACATTCAG+GGG - chr4_3:2207488-2207507 Msa0624240:intron 35.0%
!!! CTGTCATCTCAATTTTTTGC+TGG + chr4_3:2207525-2207544 None:intergenic 35.0%
TATGCAGCAGTTAAACAGTT+TGG - chr4_3:2207685-2207704 Msa0624240:intron 35.0%
! CCCCTTTTGAATACGATAAT+AGG - chr4_3:2207848-2207867 Msa0624240:intron 35.0%
! GATATGGTTCTTGTTTGATC+TGG - chr4_3:2207879-2207898 Msa0624240:intron 35.0%
!! TAAGTGTTTTGGATCTTGGA+AGG - chr4_3:2208135-2208154 Msa0624240:CDS 35.0%
TGCCTTAAAATCTTTCCAAG+TGG - chr4_3:2208179-2208198 Msa0624240:CDS 35.0%
ATGTTCCCTAAAATTCCACT+TGG + chr4_3:2208197-2208216 None:intergenic 35.0%
CAATATATTTGTCCAACCGA+AGG - chr4_3:2208320-2208339 Msa0624240:CDS 35.0%
TTCTCAAATATTGATGTGGC+AGG - chr4_3:2208356-2208375 Msa0624240:exon 35.0%
! GGTTTTCGCCATCATTTATA+TGG - chr4_3:2208377-2208396 Msa0624240:five_prime_UTR 35.0%
GCAGAATCCCATATAAATGA+TGG + chr4_3:2208388-2208407 None:intergenic 35.0%
GATGTCATAGAAGCTGGAAA+TGG - chr4_3:2206388-2206407 Msa0624240:three_prime_UTR 40.0%
CTTGTTGAAGCTACTAGAAC+TGG - chr4_3:2206475-2206494 Msa0624240:three_prime_UTR 40.0%
! AAGCTACTAGAACTGGTTTC+CGG - chr4_3:2206482-2206501 Msa0624240:three_prime_UTR 40.0%
GTGTTTGCTTCTAGTGTGAT+TGG - chr4_3:2206641-2206660 Msa0624240:three_prime_UTR 40.0%
GGGAGTTGAAAAATCATGTC+TGG - chr4_3:2206751-2206770 Msa0624240:CDS 40.0%
! TAATGAAGTGTTTGTGGTGC+TGG - chr4_3:2207413-2207432 Msa0624240:intron 40.0%
! TCTGAAGTCTTACCAAGTGA+TGG - chr4_3:2207556-2207575 Msa0624240:intron 40.0%
TCACAAAATGGTCCATCACT+TGG + chr4_3:2207571-2207590 None:intergenic 40.0%
!! GGATTTGCTTGGTTCACTTT+TGG + chr4_3:2207622-2207641 None:intergenic 40.0%
AGGGTCTTCATGTTCAAAGA+TGG - chr4_3:2207653-2207672 Msa0624240:intron 40.0%
ATTGAACAAAGCCATAGAGC+TGG - chr4_3:2207790-2207809 Msa0624240:intron 40.0%
TAATTGATCATGCCTTCGGT+TGG + chr4_3:2208335-2208354 None:intergenic 40.0%
GATGTCATAGAAGCTGGAAA+TGG - chr4_3:2206388-2206407 Msa0624240:three_prime_UTR 40.0%
CTTGTTGAAGCTACTAGAAC+TGG - chr4_3:2206475-2206494 Msa0624240:three_prime_UTR 40.0%
! AAGCTACTAGAACTGGTTTC+CGG - chr4_3:2206482-2206501 Msa0624240:three_prime_UTR 40.0%
GTGTTTGCTTCTAGTGTGAT+TGG - chr4_3:2206641-2206660 Msa0624240:three_prime_UTR 40.0%
GGGAGTTGAAAAATCATGTC+TGG - chr4_3:2206751-2206770 Msa0624240:CDS 40.0%
! TAATGAAGTGTTTGTGGTGC+TGG - chr4_3:2207413-2207432 Msa0624240:intron 40.0%
! TCTGAAGTCTTACCAAGTGA+TGG - chr4_3:2207556-2207575 Msa0624240:intron 40.0%
TCACAAAATGGTCCATCACT+TGG + chr4_3:2207571-2207590 None:intergenic 40.0%
!! GGATTTGCTTGGTTCACTTT+TGG + chr4_3:2207622-2207641 None:intergenic 40.0%
AGGGTCTTCATGTTCAAAGA+TGG - chr4_3:2207653-2207672 Msa0624240:intron 40.0%
ATTGAACAAAGCCATAGAGC+TGG - chr4_3:2207790-2207809 Msa0624240:intron 40.0%
TAATTGATCATGCCTTCGGT+TGG + chr4_3:2208335-2208354 None:intergenic 40.0%
AACTCCAAGCATGCAATCCA+TGG - chr4_3:2206249-2206268 Msa0624240:three_prime_UTR 45.0%
TGAGAGCTTCAATGTTGTGG+TGG + chr4_3:2206281-2206300 None:intergenic 45.0%
CAGTGAGAGCTTCAATGTTG+TGG + chr4_3:2206284-2206303 None:intergenic 45.0%
! ATGTCTGGAGCTATGAAGCA+CGG - chr4_3:2206766-2206785 Msa0624240:CDS 45.0%
ACTCTTCCCACTGTTTACGT+TGG - chr4_3:2207050-2207069 Msa0624240:CDS 45.0%
CTCTTCCCACTGTTTACGTT+GGG - chr4_3:2207051-2207070 Msa0624240:CDS 45.0%
CACTTCCCAACGTAAACAGT+GGG + chr4_3:2207059-2207078 None:intergenic 45.0%
ACACTTCCCAACGTAAACAG+TGG + chr4_3:2207060-2207079 None:intergenic 45.0%
GGTAAGACTTCAGAGAGAAC+AGG + chr4_3:2207550-2207569 None:intergenic 45.0%
TGAACATGAAGACCCTTTGC+AGG + chr4_3:2207649-2207668 None:intergenic 45.0%
GCAGCAGTTAAACAGTTTGG+TGG - chr4_3:2207688-2207707 Msa0624240:intron 45.0%
ACAGTATTGCCGGTACTAAG+TGG - chr4_3:2207758-2207777 Msa0624240:intron 45.0%
AGCAGAAGACCACTTAGTAC+CGG + chr4_3:2207770-2207789 None:intergenic 45.0%
! CGATGACAAGGAGAAAGTGT+AGG + chr4_3:2208274-2208293 None:intergenic 45.0%
TATGGGATTCTGCTTTGTCG+CGG - chr4_3:2208395-2208414 Msa0624240:five_prime_UTR 45.0%
AACTCCAAGCATGCAATCCA+TGG - chr4_3:2206249-2206268 Msa0624240:three_prime_UTR 45.0%
TGAGAGCTTCAATGTTGTGG+TGG + chr4_3:2206281-2206300 None:intergenic 45.0%
CAGTGAGAGCTTCAATGTTG+TGG + chr4_3:2206284-2206303 None:intergenic 45.0%
! ATGTCTGGAGCTATGAAGCA+CGG - chr4_3:2206766-2206785 Msa0624240:CDS 45.0%
ACTCTTCCCACTGTTTACGT+TGG - chr4_3:2207050-2207069 Msa0624240:CDS 45.0%
CTCTTCCCACTGTTTACGTT+GGG - chr4_3:2207051-2207070 Msa0624240:CDS 45.0%
CACTTCCCAACGTAAACAGT+GGG + chr4_3:2207059-2207078 None:intergenic 45.0%
ACACTTCCCAACGTAAACAG+TGG + chr4_3:2207060-2207079 None:intergenic 45.0%
GGTAAGACTTCAGAGAGAAC+AGG + chr4_3:2207550-2207569 None:intergenic 45.0%
TGAACATGAAGACCCTTTGC+AGG + chr4_3:2207649-2207668 None:intergenic 45.0%
GCAGCAGTTAAACAGTTTGG+TGG - chr4_3:2207688-2207707 Msa0624240:intron 45.0%
ACAGTATTGCCGGTACTAAG+TGG - chr4_3:2207758-2207777 Msa0624240:intron 45.0%
AGCAGAAGACCACTTAGTAC+CGG + chr4_3:2207770-2207789 None:intergenic 45.0%
! CGATGACAAGGAGAAAGTGT+AGG + chr4_3:2208274-2208293 None:intergenic 45.0%
TATGGGATTCTGCTTTGTCG+CGG - chr4_3:2208395-2208414 Msa0624240:five_prime_UTR 45.0%
! ACAGCCATGGATTGCATGCT+TGG + chr4_3:2206256-2206275 None:intergenic 50.0%
TGTTGTGGTGGTTACAGCCA+TGG + chr4_3:2206269-2206288 None:intergenic 50.0%
GGACACTCTATGCGTTTGCA+TGG + chr4_3:2206361-2206380 None:intergenic 50.0%
! CTACTAGAACTGGTTTCCGG+AGG - chr4_3:2206485-2206504 Msa0624240:three_prime_UTR 50.0%
GCTGGGATACGTCTAATTCG+AGG - chr4_3:2206911-2206930 Msa0624240:CDS 50.0%
!! GAGGAGTGTCTGTGCTTCAT+AGG - chr4_3:2206930-2206949 Msa0624240:CDS 50.0%
GTGTCTGTGCTTCATAGGTC+TGG - chr4_3:2206935-2206954 Msa0624240:CDS 50.0%
TCTGTGCTTCATAGGTCTGG+AGG - chr4_3:2206938-2206957 Msa0624240:CDS 50.0%
! GTGTGTGTTTGGTTTCACGG+TGG + chr4_3:2207346-2207365 None:intergenic 50.0%
!! TTGCAGGTGGTGGATTTGCT+TGG + chr4_3:2207633-2207652 None:intergenic 50.0%
AGCAAATCCACCACCTGCAA+AGG - chr4_3:2207633-2207652 Msa0624240:intron 50.0%
GCAAATCCACCACCTGCAAA+GGG - chr4_3:2207634-2207653 Msa0624240:intron 50.0%
ACATGAAGACCCTTTGCAGG+TGG + chr4_3:2207646-2207665 None:intergenic 50.0%
! TGAGCTAGCATCAGCGTTGA+AGG - chr4_3:2207735-2207754 Msa0624240:intron 50.0%
GCGTTGAAGGACAGTATTGC+CGG - chr4_3:2207748-2207767 Msa0624240:intron 50.0%
CTGAAGCATGACCAGCTCTA+TGG + chr4_3:2207804-2207823 None:intergenic 50.0%
TCACACTTGGTACCATCGGT+GGG + chr4_3:2208224-2208243 None:intergenic 50.0%
AGGCTCACACTTGGTACCAT+CGG + chr4_3:2208228-2208247 None:intergenic 50.0%
TGGAAGGAAAGGCTCACACT+TGG + chr4_3:2208237-2208256 None:intergenic 50.0%
CCATGGTTGCTTGGAAGGAA+AGG + chr4_3:2208248-2208267 None:intergenic 50.0%
CCTTTCCTTCCAAGCAACCA+TGG - chr4_3:2208245-2208264 Msa0624240:CDS 50.0%
TGTAGGTTGCCATGGTTGCT+TGG + chr4_3:2208257-2208276 None:intergenic 50.0%
! GGAGAAAGTGTAGGTTGCCA+TGG + chr4_3:2208265-2208284 None:intergenic 50.0%
! ACAGCCATGGATTGCATGCT+TGG + chr4_3:2206256-2206275 None:intergenic 50.0%
TGTTGTGGTGGTTACAGCCA+TGG + chr4_3:2206269-2206288 None:intergenic 50.0%
GGACACTCTATGCGTTTGCA+TGG + chr4_3:2206361-2206380 None:intergenic 50.0%
! CTACTAGAACTGGTTTCCGG+AGG - chr4_3:2206485-2206504 Msa0624240:three_prime_UTR 50.0%
GCTGGGATACGTCTAATTCG+AGG - chr4_3:2206911-2206930 Msa0624240:CDS 50.0%
!! GAGGAGTGTCTGTGCTTCAT+AGG - chr4_3:2206930-2206949 Msa0624240:CDS 50.0%
GTGTCTGTGCTTCATAGGTC+TGG - chr4_3:2206935-2206954 Msa0624240:CDS 50.0%
TCTGTGCTTCATAGGTCTGG+AGG - chr4_3:2206938-2206957 Msa0624240:CDS 50.0%
! GTGTGTGTTTGGTTTCACGG+TGG + chr4_3:2207346-2207365 None:intergenic 50.0%
!! TTGCAGGTGGTGGATTTGCT+TGG + chr4_3:2207633-2207652 None:intergenic 50.0%
AGCAAATCCACCACCTGCAA+AGG - chr4_3:2207633-2207652 Msa0624240:intron 50.0%
GCAAATCCACCACCTGCAAA+GGG - chr4_3:2207634-2207653 Msa0624240:intron 50.0%
ACATGAAGACCCTTTGCAGG+TGG + chr4_3:2207646-2207665 None:intergenic 50.0%
! TGAGCTAGCATCAGCGTTGA+AGG - chr4_3:2207735-2207754 Msa0624240:intron 50.0%
GCGTTGAAGGACAGTATTGC+CGG - chr4_3:2207748-2207767 Msa0624240:intron 50.0%
CTGAAGCATGACCAGCTCTA+TGG + chr4_3:2207804-2207823 None:intergenic 50.0%
TCACACTTGGTACCATCGGT+GGG + chr4_3:2208224-2208243 None:intergenic 50.0%
AGGCTCACACTTGGTACCAT+CGG + chr4_3:2208228-2208247 None:intergenic 50.0%
TGGAAGGAAAGGCTCACACT+TGG + chr4_3:2208237-2208256 None:intergenic 50.0%
CCATGGTTGCTTGGAAGGAA+AGG + chr4_3:2208248-2208267 None:intergenic 50.0%
CCTTTCCTTCCAAGCAACCA+TGG - chr4_3:2208245-2208264 Msa0624240:CDS 50.0%
TGTAGGTTGCCATGGTTGCT+TGG + chr4_3:2208257-2208276 None:intergenic 50.0%
! GGAGAAAGTGTAGGTTGCCA+TGG + chr4_3:2208265-2208284 None:intergenic 50.0%
GGAGCTATGAAGCACGGATG+CGG - chr4_3:2206772-2206791 Msa0624240:CDS 55.0%
CACGAACACCGAACACGACA+CGG - chr4_3:2206796-2206815 Msa0624240:CDS 55.0%
TGAAGACCCTTTGCAGGTGG+TGG + chr4_3:2207643-2207662 None:intergenic 55.0%
CTCACACTTGGTACCATCGG+TGG + chr4_3:2208225-2208244 None:intergenic 55.0%
GGTTGCCATGGTTGCTTGGA+AGG + chr4_3:2208253-2208272 None:intergenic 55.0%
GGAGCTATGAAGCACGGATG+CGG - chr4_3:2206772-2206791 Msa0624240:CDS 55.0%
CACGAACACCGAACACGACA+CGG - chr4_3:2206796-2206815 Msa0624240:CDS 55.0%
TGAAGACCCTTTGCAGGTGG+TGG + chr4_3:2207643-2207662 None:intergenic 55.0%
CTCACACTTGGTACCATCGG+TGG + chr4_3:2208225-2208244 None:intergenic 55.0%
GGTTGCCATGGTTGCTTGGA+AGG + chr4_3:2208253-2208272 None:intergenic 55.0%
CGTGGTGTCCGTGTCGTGTT+CGG + chr4_3:2206807-2206826 None:intergenic 60.0%
ACGACACGGACACCACGACA+CGG - chr4_3:2206810-2206829 Msa0624240:CDS 60.0%
!! AAGTGTCGGTGTCGTGTCGC+TGG - chr4_3:2206893-2206912 Msa0624240:CDS 60.0%
!! AGTGTCGGTGTCGTGTCGCT+GGG - chr4_3:2206894-2206913 Msa0624240:CDS 60.0%
GGGAACATCAGTCCCACCGA+TGG - chr4_3:2208209-2208228 Msa0624240:CDS 60.0%
CGTGGTGTCCGTGTCGTGTT+CGG + chr4_3:2206807-2206826 None:intergenic 60.0%
ACGACACGGACACCACGACA+CGG - chr4_3:2206810-2206829 Msa0624240:CDS 60.0%
!! AAGTGTCGGTGTCGTGTCGC+TGG - chr4_3:2206893-2206912 Msa0624240:CDS 60.0%
!! AGTGTCGGTGTCGTGTCGCT+GGG - chr4_3:2206894-2206913 Msa0624240:CDS 60.0%
GGGAACATCAGTCCCACCGA+TGG - chr4_3:2208209-2208228 Msa0624240:CDS 60.0%
GCGTGTCAGTGTCCGTGTCG+TGG + chr4_3:2206825-2206844 None:intergenic 65.0%
GCGTGTCAGTGTCCGTGTCG+TGG + chr4_3:2206825-2206844 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr4_3 gene 2206178 2208448 2206178 ID=Msa0624240;Name=Msa0624240
chr4_3 mRNA 2206178 2208448 2206178 ID=Msa0624240-mRNA-1;Parent=Msa0624240;Name=Msa0624240-mRNA-1;_AED=0.34;_eAED=0.34;_QI=81|1|1|1|1|1|2|524|227
chr4_3 exon 2206178 2207137 2206178 ID=Msa0624240-mRNA-1:exon:609;Parent=Msa0624240-mRNA-1
chr4_3 exon 2208120 2208448 2208120 ID=Msa0624240-mRNA-1:exon:608;Parent=Msa0624240-mRNA-1
chr4_3 five_prime_UTR 2208368 2208448 2208368 ID=Msa0624240-mRNA-1:five_prime_utr;Parent=Msa0624240-mRNA-1
chr4_3 CDS 2208120 2208367 2208120 ID=Msa0624240-mRNA-1:cds;Parent=Msa0624240-mRNA-1
chr4_3 CDS 2206702 2207137 2206702 ID=Msa0624240-mRNA-1:cds;Parent=Msa0624240-mRNA-1
chr4_3 three_prime_UTR 2206178 2206701 2206178 ID=Msa0624240-mRNA-1:three_prime_utr;Parent=Msa0624240-mRNA-1
Gene Sequence

>Msa0624240

ATGCAATCCATGGCTGTAACCACCACAACATTGAAGCTCTCACTGTTCTTGACTCTTATCTCAATTTCATTATCGGGTATTCTTTCATATGATATTATACCATGCAAACGCATAGAGTGTCCCAACTATGATGTCATAGAAGCTGGAAATGGCTATGAAATCAGACGTTATAATTCGTCTGTTTGGATTTCCAATTCTCCTATTCAAGACATTTCTCTTGTTGAAGCTACTAGAACTGGTTTCCGGAGGCTATTTGATTACATTCAGGGGAAGAACAACTACCAGCAAAAAATTGAGATGACAGCACCTGTTCTCTCTGAAGTCTTACCAAGTGATGGACCATTTTGTGAGTCTTCATTTGTTGTCAGCTTTTATGTACCAAAAGTGAACCAAGCAAATCCACCACCTGCAAAGGGTCTTCATGTTCAAAGATGGAAATCTGTGTATGCAGCAGTTAAACAGTTTGGTGGATTTGTCAAAGATACAGATGTTGGTGAGCTAGCATCAGCGTTGAAGGACAGTATTGCCGGTACTAAGTGGTCTTCTGCTATTGAACAAAGCCATAGAGCTGGTCATGCTTCAGTTTACTCTGTTGCTCAGTACAATGCCCCTTTTGAATACGATAATAGGGTGAATGAGATATGGTTCTTGTTTGATCTGGAAAATGGTTTGCATTCTATGTGA

Protein sequence

>Msa0624240

MQSMAVTTTTLKLSLFLTLISISLSGILSYDIIPCKRIECPNYDVIEAGNGYEIRRYNSSVWISNSPIQDISLVEATRTGFRRLFDYIQGKNNYQQKIEMTAPVLSEVLPSDGPFCESSFVVSFYVPKVNQANPPPAKGLHVQRWKSVYAAVKQFGGFVKDTDVGELASALKDSIAGTKWSSAIEQSHRAGHASVYSVAQYNAPFEYDNRVNEIWFLFDLENGLHSM*