AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0524020


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0524020 MtrunA17_Chr3g0145181 93.750 64 4 0 3 66 84 147 1.19e-38 130
Msa0524020 MtrunA17_Chr3g0145201 93.750 64 4 0 3 66 719 782 7.92e-37 130
Msa0524020 MtrunA17_Chr8g0370721 72.308 65 15 2 3 66 85 147 3.92e-24 92.8
Msa0524020 MtrunA17_Chr3g0145171 68.182 66 18 2 2 66 84 147 7.73e-22 86.7
Msa0524020 MtrunA17_Chr8g0370711 64.615 65 20 2 3 66 85 147 2.11e-20 82.8
Msa0524020 MtrunA17_Chr4g0064781 54.545 66 27 2 2 66 78 141 5.45e-15 67.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0524020 AT1G49390.1 51.515 66 29 2 1 65 77 140 1.29e-16 72.8
Msa0524020 AT1G49390.2 52.381 63 27 2 4 65 1 61 6.61e-16 70.1
Msa0524020 AT5G20400.1 48.485 66 31 2 1 65 77 140 8.82e-15 67.8
Msa0524020 AT5G54000.2 46.970 66 32 2 1 65 78 141 4.69e-13 62.8
Msa0524020 AT5G20550.1 46.970 66 32 2 1 65 77 140 1.19e-12 61.6
Msa0524020 AT5G54000.1 47.619 63 30 2 4 65 1 61 2.53e-12 60.5

Find 64 sgRNAs with CRISPR-Local

Find 170 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTGACCTCTTTCTCTGAATT+TGG 0.078203 3_4:-77455053 None:intergenic
ATAATTATTCAGATCTTAAA+AGG 0.235242 3_4:+77452842 Msa0524020:CDS
ACATTAATAAGGAGAGTATC+AGG 0.295260 3_4:-77454490 None:intergenic
TTCACAGATTTGTATAATAC+TGG 0.296490 3_4:-77455107 None:intergenic
CATGTCAAAATTAGCGAATT+TGG 0.305244 3_4:+77454261 Msa0524020:three_prime_UTR
TTTGATCACCAACATTAATA+AGG 0.306467 3_4:-77454501 None:intergenic
TGACCTCTTTCTCTGAATTT+GGG 0.313229 3_4:-77455052 None:intergenic
TTATTAGTGTTTATGTTGTA+TGG 0.329069 3_4:+77455321 Msa0524020:three_prime_UTR
TTTGGTGTTGGCTTTGGGTT+TGG 0.334082 3_4:+77455248 Msa0524020:three_prime_UTR
CTTATCAGAATTTCGTGAAA+TGG 0.353864 3_4:+77455204 Msa0524020:three_prime_UTR
CTCTCTCTCCACATTCCTTC+AGG 0.361162 3_4:-77454297 None:intergenic
CAGATCTTAAAAGGAGTGAT+TGG 0.366917 3_4:+77452851 Msa0524020:CDS
TAAACCACTTATTATCTTTG+AGG 0.376533 3_4:-77454453 None:intergenic
GTGGAAGTTAAGCTTGCTTT+TGG 0.377138 3_4:+77455230 Msa0524020:three_prime_UTR
TCATTCACTAATTTGTCAAT+TGG 0.381266 3_4:-77455077 None:intergenic
AGCAGAATAGTTATAGTTGA+TGG 0.381964 3_4:-77454400 None:intergenic
TCTTCCGTAGGGAGAAATCT+TGG 0.403578 3_4:-77455150 None:intergenic
AGGAGAGTATCAGGGACTAT+TGG 0.417976 3_4:-77454481 None:intergenic
TATTAATGTTGGTGATCAAA+TGG 0.418275 3_4:+77454504 Msa0524020:three_prime_UTR
TTTCTCTGAATTTGGGCGAC+AGG 0.441071 3_4:-77455045 None:intergenic
ACTTATTATCTTTGAGGACT+TGG 0.443778 3_4:-77454447 None:intergenic
TCTACCACTGCTCTGTGTAC+TGG 0.465041 3_4:-77454990 None:intergenic
TATTATCTTTGAGGACTTGG+AGG 0.465410 3_4:-77454444 None:intergenic
TTCGTGTTGGTGGTAGCCTT+TGG 0.468089 3_4:+77455285 Msa0524020:three_prime_UTR
ACAAAGTGAGGGAAGTTTCA+AGG 0.475102 3_4:+77452737 Msa0524020:CDS
GAATTTCGTGAAATGGTTTG+TGG 0.475566 3_4:+77455211 Msa0524020:three_prime_UTR
TATTCTGCTGCAAGATAAAG+AGG 0.477023 3_4:+77454414 Msa0524020:three_prime_UTR
AGATCTTAAAAGGAGTGATT+GGG 0.478731 3_4:+77452852 Msa0524020:CDS
ACGGTTGATACTGAAGGATA+TGG 0.488295 3_4:+77452814 Msa0524020:CDS
CTGCAAGATAAAGAGGTAGA+AGG 0.491422 3_4:+77454421 Msa0524020:three_prime_UTR
CTTCCGTAGGGAGAAATCTT+GGG 0.502135 3_4:-77455149 None:intergenic
AAAATTAGCGAATTTGGAAG+AGG 0.504966 3_4:+77454267 Msa0524020:three_prime_UTR
CCTTCAGTATCAACCGTGCC+TGG 0.506617 3_4:-77452808 None:intergenic
AGCAGTGGTAGATTCAGAAA+AGG 0.509800 3_4:+77455001 Msa0524020:three_prime_UTR
ATATAACTGCAATACACATT+CGG 0.512142 3_4:-77454221 None:intergenic
CCTAAAACATGATCAGCCTT+AGG 0.515695 3_4:-77454358 None:intergenic
GATACTCTCCTTATTAATGT+TGG 0.519577 3_4:+77454493 Msa0524020:three_prime_UTR
TCGCCCAAATTCAGAGAAAG+AGG 0.523539 3_4:+77455049 Msa0524020:three_prime_UTR
GCTTGTTTCTTGACAAAGTG+AGG 0.525833 3_4:+77452725 Msa0524020:CDS
AAGTCCTCAAAGATAATAAG+TGG 0.529804 3_4:+77454449 Msa0524020:three_prime_UTR
GCAATTCTTTGAACTTCCAA+AGG 0.540464 3_4:+77452759 Msa0524020:CDS
CTGCTCTGTGTACTGGACTC+TGG 0.541662 3_4:-77454983 None:intergenic
TTTATTACAACATGCGCTCA+AGG 0.550881 3_4:-77455371 None:intergenic
TTGATCAATTGGTCTTCCGT+AGG 0.551149 3_4:-77455162 None:intergenic
GACTGTTTCCTGAAGGAATG+TGG 0.554652 3_4:+77454289 Msa0524020:three_prime_UTR
GGAAGAGGACTGTTTCCTGA+AGG 0.568905 3_4:+77454282 Msa0524020:three_prime_UTR
TTACTACCCTCCATGTCCTA+AGG 0.569552 3_4:+77454342 Msa0524020:three_prime_UTR
TGATCAATTGGTCTTCCGTA+GGG 0.575759 3_4:-77455161 None:intergenic
ACAAATTAGTGAATGAGTCA+AGG 0.582347 3_4:+77455084 Msa0524020:three_prime_UTR
CTTGTTTCTTGACAAAGTGA+GGG 0.582916 3_4:+77452726 Msa0524020:CDS
ACATGATCAGCCTTAGGACA+TGG 0.583993 3_4:-77454352 None:intergenic
TGGTAGATTCAGAAAAGGAA+AGG 0.602131 3_4:+77455006 Msa0524020:three_prime_UTR
TATCCCAAGATTTCTCCCTA+CGG 0.608939 3_4:+77455146 Msa0524020:three_prime_UTR
CCAGGCACGGTTGATACTGA+AGG 0.614618 3_4:+77452808 Msa0524020:CDS
GGCTGATAGAGTATATCTGA+AGG 0.636076 3_4:+77452873 Msa0524020:CDS
GAAACAAGCTTGTCATACCA+TGG 0.643039 3_4:-77452711 None:intergenic
TACACACAGATAATGAGCAA+TGG 0.644211 3_4:+77454954 Msa0524020:intron
TAATGTTGGTGATCAAATGG+AGG 0.646846 3_4:+77454507 Msa0524020:three_prime_UTR
GAGTCCAGTACACAGAGCAG+TGG 0.647252 3_4:+77454986 Msa0524020:three_prime_UTR
CATTAATAAGGAGAGTATCA+GGG 0.649449 3_4:-77454489 None:intergenic
GTGATTCAGGCAATCAACCA+TGG 0.671758 3_4:+77452694 Msa0524020:intron
TGATCAGCCTTAGGACATGG+AGG 0.674967 3_4:-77454349 None:intergenic
GATCAGCCTTAGGACATGGA+GGG 0.676619 3_4:-77454348 None:intergenic
ATTACAACATGCGCTCAAGG+CGG 0.726715 3_4:-77455368 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTATATGTATTTAAAATTGA+GGG - chr3_4:77453251-77453270 None:intergenic 10.0%
!!! AAGTATTTTTAATGATTTAA+CGG + chr3_4:77455397-77455416 Msa0524020:three_prime_UTR 10.0%
!! ATAATTATTCAGATCTTAAA+AGG + chr3_4:77452842-77452861 Msa0524020:CDS 15.0%
!!! GTTATATGTATTTAAAATTG+AGG - chr3_4:77453252-77453271 None:intergenic 15.0%
!! TAAGCATAAAGAAAAAAAAA+TGG - chr3_4:77453428-77453447 None:intergenic 15.0%
!!! AATTATTTTAGAGTATACTT+GGG - chr3_4:77453527-77453546 None:intergenic 15.0%
!!! AAATTATTTTAGAGTATACT+TGG - chr3_4:77453528-77453547 None:intergenic 15.0%
!! TCTATAATAATGATTGTTAT+TGG + chr3_4:77453550-77453569 Msa0524020:intron 15.0%
!!! ATCTTTTTTTGTTATATTGT+TGG + chr3_4:77453601-77453620 Msa0524020:intron 15.0%
!!! AGTTATATGAAGTAATTTTA+AGG + chr3_4:77454236-77454255 Msa0524020:exon 15.0%
!!! GTTATATGAAGTAATTTTAA+GGG + chr3_4:77454237-77454256 Msa0524020:exon 15.0%
!!! ATCATTTTTTAGGTTTATAT+AGG - chr3_4:77454908-77454927 None:intergenic 15.0%
!! ATATAAACCTAAAAAATGAT+AGG + chr3_4:77454908-77454927 Msa0524020:intron 15.0%
!! GTTAAATCATTAAAAATACT+TGG - chr3_4:77455398-77455417 None:intergenic 15.0%
!!! TATCAAGATTTTCTGAAAAA+TGG + chr3_4:77452262-77452281 Msa0524020:intron 20.0%
!! TAATTGAGAATATCATTCTT+GGG - chr3_4:77452666-77452685 None:intergenic 20.0%
!! TTAATTGAGAATATCATTCT+TGG - chr3_4:77452667-77452686 None:intergenic 20.0%
!!! ATGAAAGGAATTTAAAACTT+TGG + chr3_4:77452908-77452927 Msa0524020:intron 20.0%
!!! TATTTTTCTGTCTTTACATA+TGG + chr3_4:77453135-77453154 Msa0524020:intron 20.0%
!! GAGTATATATATAAGAGTTT+GGG + chr3_4:77453485-77453504 Msa0524020:intron 20.0%
!!! GGTGTTTTTCTATAAAATTT+TGG - chr3_4:77453712-77453731 None:intergenic 20.0%
!! TAAAGTTTGAAAACTATGAA+CGG - chr3_4:77453733-77453752 None:intergenic 20.0%
!!! TTAATTTTTTTTCCTTTGTC+CGG + chr3_4:77453990-77454009 Msa0524020:intron 20.0%
!! TATAAAAAAATACGAGTTAG+AGG - chr3_4:77454029-77454048 None:intergenic 20.0%
!! TTATTTAACAATCTCAGTTA+AGG - chr3_4:77454609-77454628 None:intergenic 20.0%
!!! TAAATTTTGCATTGATCAAT+TGG - chr3_4:77455176-77455195 None:intergenic 20.0%
!! TTATTAGTGTTTATGTTGTA+TGG + chr3_4:77455321-77455340 Msa0524020:three_prime_UTR 20.0%
!! TGAAGATTTGATTCTGAAAA+AGG - chr3_4:77452469-77452488 None:intergenic 25.0%
! AATTAATTGTTGTGTGATTC+AGG + chr3_4:77452681-77452700 Msa0524020:intron 25.0%
! TTTAAATTCCTTTCATCTTC+AGG - chr3_4:77452904-77452923 None:intergenic 25.0%
!! ATAGCAAATTTCAACTCTTT+TGG + chr3_4:77453199-77453218 Msa0524020:intron 25.0%
!! TTCCTTATCTTTTATTCTGA+TGG + chr3_4:77453351-77453370 Msa0524020:intron 25.0%
! CGAGTATATATATAAGAGTT+TGG + chr3_4:77453484-77453503 Msa0524020:intron 25.0%
!!! ATTGGTGTCATTAAAAAGAT+AGG + chr3_4:77453568-77453587 Msa0524020:intron 25.0%
!!! ACCTTTTTTATCTATTTCGA+TGG - chr3_4:77453629-77453648 None:intergenic 25.0%
!!! TGATTTTAGCTAAAGGATAA+GGG - chr3_4:77454068-77454087 None:intergenic 25.0%
!!! TTGATTTTAGCTAAAGGATA+AGG - chr3_4:77454069-77454088 None:intergenic 25.0%
!!! TGTCAATTGATTTTAGCTAA+AGG - chr3_4:77454075-77454094 None:intergenic 25.0%
! TTGAAATATGAGTTCCAATT+CGG - chr3_4:77454112-77454131 None:intergenic 25.0%
! AACTCATATTTCAAAGAAGA+TGG + chr3_4:77454118-77454137 Msa0524020:intron 25.0%
! ATATAACTGCAATACACATT+CGG - chr3_4:77454224-77454243 None:intergenic 25.0%
! TAAACCACTTATTATCTTTG+AGG - chr3_4:77454456-77454475 None:intergenic 25.0%
! TTTGATCACCAACATTAATA+AGG - chr3_4:77454504-77454523 None:intergenic 25.0%
!!! TATTAATGTTGGTGATCAAA+TGG + chr3_4:77454504-77454523 Msa0524020:three_prime_UTR 25.0%
! TCTAAATACCAAAAAATCCA+AGG + chr3_4:77454575-77454594 Msa0524020:intron 25.0%
!!! CATCAATCCTATCATTTTTT+AGG - chr3_4:77454918-77454937 None:intergenic 25.0%
!! TCATTCACTAATTTGTCAAT+TGG - chr3_4:77455080-77455099 None:intergenic 25.0%
! TTCACAGATTTGTATAATAC+TGG - chr3_4:77455110-77455129 None:intergenic 25.0%
!!! GATTTTGTTTTTATTCGTGT+TGG + chr3_4:77455272-77455291 Msa0524020:three_prime_UTR 25.0%
!! TTTTCTGAAAAATGGAAGAG+TGG + chr3_4:77452270-77452289 Msa0524020:intron 30.0%
! TTTCTGAAAAATGGAAGAGT+GGG + chr3_4:77452271-77452290 Msa0524020:intron 30.0%
TTGATCAGTCTCAAGAAAAA+TGG + chr3_4:77452327-77452346 Msa0524020:intron 30.0%
CATATTACAGTCATTGACAT+TGG + chr3_4:77452487-77452506 Msa0524020:intron 30.0%
!! CATTTTTGCTTTTCTTCCTT+TGG - chr3_4:77452778-77452797 None:intergenic 30.0%
AAGAAAAGCAAAAATGTGCT+CGG + chr3_4:77452782-77452801 Msa0524020:CDS 30.0%
AGATCTTAAAAGGAGTGATT+GGG + chr3_4:77452852-77452871 Msa0524020:CDS 30.0%
! CTGAAATCATTGAGTTTTTC+TGG - chr3_4:77452934-77452953 None:intergenic 30.0%
CAGAAAAACTCAATGATTTC+AGG + chr3_4:77452932-77452951 Msa0524020:intron 30.0%
CAACTTTATTGAGAAGTTAG+TGG - chr3_4:77452964-77452983 None:intergenic 30.0%
GTCAGGGATATTTCTTAATA+TGG + chr3_4:77453040-77453059 Msa0524020:intron 30.0%
CTCCATCAGAATAAAAGATA+AGG - chr3_4:77453356-77453375 None:intergenic 30.0%
GCCATCGAAATAGATAAAAA+AGG + chr3_4:77453625-77453644 Msa0524020:intron 30.0%
AAAATACGAGTTAGAGGTTT+GGG - chr3_4:77454023-77454042 None:intergenic 30.0%
AAAAATACGAGTTAGAGGTT+TGG - chr3_4:77454024-77454043 None:intergenic 30.0%
!!! GATTTTAGCTAAAGGATAAG+GGG - chr3_4:77454067-77454086 None:intergenic 30.0%
GTAAATGAATTTGTGAATGC+AGG + chr3_4:77454179-77454198 Msa0524020:intron 30.0%
!! CAAATTCGCTAATTTTGACA+TGG - chr3_4:77454263-77454282 None:intergenic 30.0%
CATGTCAAAATTAGCGAATT+TGG + chr3_4:77454261-77454280 Msa0524020:three_prime_UTR 30.0%
AAAATTAGCGAATTTGGAAG+AGG + chr3_4:77454267-77454286 Msa0524020:three_prime_UTR 30.0%
AGCAGAATAGTTATAGTTGA+TGG - chr3_4:77454403-77454422 None:intergenic 30.0%
! ACTTATTATCTTTGAGGACT+TGG - chr3_4:77454450-77454469 None:intergenic 30.0%
AAGTCCTCAAAGATAATAAG+TGG + chr3_4:77454449-77454468 Msa0524020:three_prime_UTR 30.0%
!! CATTAATAAGGAGAGTATCA+GGG - chr3_4:77454492-77454511 None:intergenic 30.0%
!! ACATTAATAAGGAGAGTATC+AGG - chr3_4:77454493-77454512 None:intergenic 30.0%
GATACTCTCCTTATTAATGT+TGG + chr3_4:77454493-77454512 Msa0524020:three_prime_UTR 30.0%
AATTAATGATGTGATCCTAG+TGG + chr3_4:77454738-77454757 Msa0524020:intron 30.0%
TTATTCTCTTGATCGTACTT+TGG + chr3_4:77454794-77454813 Msa0524020:intron 30.0%
ACAAATTAGTGAATGAGTCA+AGG + chr3_4:77455084-77455103 Msa0524020:three_prime_UTR 30.0%
CTTATCAGAATTTCGTGAAA+TGG + chr3_4:77455204-77455223 Msa0524020:three_prime_UTR 30.0%
!!! TTTGTTTTTATTCGTGTTGG+TGG + chr3_4:77455275-77455294 Msa0524020:three_prime_UTR 30.0%
! CTCAAGAAAAATGGAAGTGT+CGG + chr3_4:77452336-77452355 Msa0524020:intron 35.0%
TCCAAATGAGTATATCTACG+AGG + chr3_4:77452417-77452436 Msa0524020:intron 35.0%
CCAAATGAGTATATCTACGA+GGG + chr3_4:77452418-77452437 Msa0524020:intron 35.0%
! CTTGTTTCTTGACAAAGTGA+GGG + chr3_4:77452726-77452745 Msa0524020:CDS 35.0%
GCAATTCTTTGAACTTCCAA+AGG + chr3_4:77452759-77452778 Msa0524020:CDS 35.0%
AGAAAAGCAAAAATGTGCTC+GGG + chr3_4:77452783-77452802 Msa0524020:CDS 35.0%
CAGATCTTAAAAGGAGTGAT+TGG + chr3_4:77452851-77452870 Msa0524020:CDS 35.0%
AGCTACTTCAAGTCATGTAA+AGG - chr3_4:77452993-77453012 None:intergenic 35.0%
CTTTAGCGCAATAAAAAGAG+CGG + chr3_4:77453748-77453767 Msa0524020:intron 35.0%
! TAGAGGTTTGGGTTTAAATC+CGG - chr3_4:77454012-77454031 None:intergenic 35.0%
!! TGATCATGTTTTAGGCTTGA+AGG + chr3_4:77454366-77454385 Msa0524020:three_prime_UTR 35.0%
TATTCTGCTGCAAGATAAAG+AGG + chr3_4:77454414-77454433 Msa0524020:three_prime_UTR 35.0%
! TATTATCTTTGAGGACTTGG+AGG - chr3_4:77454447-77454466 None:intergenic 35.0%
!! TAATGTTGGTGATCAAATGG+AGG + chr3_4:77454507-77454526 Msa0524020:three_prime_UTR 35.0%
ATACCAAAAAATCCAAGGTC+TGG + chr3_4:77454580-77454599 Msa0524020:intron 35.0%
!! CCTTTAGAACACTTGTAAAC+TGG - chr3_4:77454647-77454666 None:intergenic 35.0%
CCAGTTTACAAGTGTTCTAA+AGG + chr3_4:77454644-77454663 Msa0524020:intron 35.0%
TACACACAGATAATGAGCAA+TGG + chr3_4:77454954-77454973 Msa0524020:intron 35.0%
TGGTAGATTCAGAAAAGGAA+AGG + chr3_4:77455006-77455025 Msa0524020:three_prime_UTR 35.0%
TGACCTCTTTCTCTGAATTT+GGG - chr3_4:77455055-77455074 None:intergenic 35.0%
TTGACCTCTTTCTCTGAATT+TGG - chr3_4:77455056-77455075 None:intergenic 35.0%
GAATTTCGTGAAATGGTTTG+TGG + chr3_4:77455211-77455230 Msa0524020:three_prime_UTR 35.0%
TAAAAACACGACTCAACCAA+AGG - chr3_4:77455304-77455323 None:intergenic 35.0%
TTTATTACAACATGCGCTCA+AGG - chr3_4:77455374-77455393 None:intergenic 35.0%
!! GAAGTGTCGGTAGAGAAAAA+AGG + chr3_4:77452349-77452368 Msa0524020:intron 40.0%
! TTTTAGATCAGTGCAAGAGC+TGG + chr3_4:77452372-77452391 Msa0524020:intron 40.0%
CCCTCGTAGATATACTCATT+TGG - chr3_4:77452421-77452440 None:intergenic 40.0%
AATGAGTATATCTACGAGGG+AGG + chr3_4:77452421-77452440 Msa0524020:intron 40.0%
GAAACAAGCTTGTCATACCA+TGG - chr3_4:77452714-77452733 None:intergenic 40.0%
! GCTTGTTTCTTGACAAAGTG+AGG + chr3_4:77452725-77452744 Msa0524020:CDS 40.0%
ACAAAGTGAGGGAAGTTTCA+AGG + chr3_4:77452737-77452756 Msa0524020:CDS 40.0%
GAAAAGCAAAAATGTGCTCG+GGG + chr3_4:77452784-77452803 Msa0524020:CDS 40.0%
AAAAGCAAAAATGTGCTCGG+GGG + chr3_4:77452785-77452804 Msa0524020:CDS 40.0%
! ACGGTTGATACTGAAGGATA+TGG + chr3_4:77452814-77452833 Msa0524020:CDS 40.0%
GGCTGATAGAGTATATCTGA+AGG + chr3_4:77452873-77452892 Msa0524020:CDS 40.0%
AGGTACATCCTGAAGATGAA+AGG + chr3_4:77452893-77452912 Msa0524020:intron 40.0%
ATATCCCTGACAGCAATATG+TGG - chr3_4:77453031-77453050 None:intergenic 40.0%
TTGGGTTTAAATCCGGACAA+AGG - chr3_4:77454005-77454024 None:intergenic 40.0%
TATTCAATCCCACTCCGAAT+TGG + chr3_4:77454095-77454114 Msa0524020:intron 40.0%
TATGAGTTCCAATTCGGAGT+GGG - chr3_4:77454106-77454125 None:intergenic 40.0%
ATATGAGTTCCAATTCGGAG+TGG - chr3_4:77454107-77454126 None:intergenic 40.0%
CCTAAAACATGATCAGCCTT+AGG - chr3_4:77454361-77454380 None:intergenic 40.0%
! CCTAAGGCTGATCATGTTTT+AGG + chr3_4:77454358-77454377 Msa0524020:three_prime_UTR 40.0%
CTGCAAGATAAAGAGGTAGA+AGG + chr3_4:77454421-77454440 Msa0524020:three_prime_UTR 40.0%
! ATGGAGGTACGTAGTAACTT+TGG + chr3_4:77454523-77454542 Msa0524020:intron 40.0%
!!! AGTCCAGACCTTGGATTTTT+TGG - chr3_4:77454586-77454605 None:intergenic 40.0%
ATGATGTGATCCTAGTGGTT+TGG + chr3_4:77454743-77454762 Msa0524020:intron 40.0%
TCTCTTGATCGTACTTTGGA+TGG + chr3_4:77454798-77454817 Msa0524020:intron 40.0%
CTCTTGATCGTACTTTGGAT+GGG + chr3_4:77454799-77454818 Msa0524020:intron 40.0%
AGCAGTGGTAGATTCAGAAA+AGG + chr3_4:77455001-77455020 Msa0524020:three_prime_UTR 40.0%
TATCCCAAGATTTCTCCCTA+CGG + chr3_4:77455146-77455165 Msa0524020:three_prime_UTR 40.0%
!! TGATCAATTGGTCTTCCGTA+GGG - chr3_4:77455164-77455183 None:intergenic 40.0%
!! TTGATCAATTGGTCTTCCGT+AGG - chr3_4:77455165-77455184 None:intergenic 40.0%
!! GTGGAAGTTAAGCTTGCTTT+TGG + chr3_4:77455230-77455249 Msa0524020:three_prime_UTR 40.0%
!! GTTAAGCTTGCTTTTGGTGT+TGG + chr3_4:77455236-77455255 Msa0524020:three_prime_UTR 40.0%
!!! TTGCTTTTGGTGTTGGCTTT+GGG + chr3_4:77455243-77455262 Msa0524020:three_prime_UTR 40.0%
! TGCTGTGCTATTGCTGTAGA+TGG - chr3_4:77452526-77452545 None:intergenic 45.0%
ATCTACAGCAATAGCACAGC+AGG + chr3_4:77452525-77452544 Msa0524020:intron 45.0%
GTGATTCAGGCAATCAACCA+TGG + chr3_4:77452694-77452713 Msa0524020:intron 45.0%
TAGCTCCACATATTGCTGTC+AGG + chr3_4:77453023-77453042 Msa0524020:intron 45.0%
AGCTCCACATATTGCTGTCA+GGG + chr3_4:77453024-77453043 Msa0524020:intron 45.0%
GACTGTTTCCTGAAGGAATG+TGG + chr3_4:77454289-77454308 Msa0524020:three_prime_UTR 45.0%
TTACTACCCTCCATGTCCTA+AGG + chr3_4:77454342-77454361 Msa0524020:three_prime_UTR 45.0%
ACATGATCAGCCTTAGGACA+TGG - chr3_4:77454355-77454374 None:intergenic 45.0%
!! AGGAGAGTATCAGGGACTAT+TGG - chr3_4:77454484-77454503 None:intergenic 45.0%
TTTCTCTGAATTTGGGCGAC+AGG - chr3_4:77455048-77455067 None:intergenic 45.0%
TCGCCCAAATTCAGAGAAAG+AGG + chr3_4:77455049-77455068 Msa0524020:three_prime_UTR 45.0%
CTTCCGTAGGGAGAAATCTT+GGG - chr3_4:77455152-77455171 None:intergenic 45.0%
TCTTCCGTAGGGAGAAATCT+TGG - chr3_4:77455153-77455172 None:intergenic 45.0%
!!! CTTGCTTTTGGTGTTGGCTT+TGG + chr3_4:77455242-77455261 Msa0524020:three_prime_UTR 45.0%
!! TTTGGTGTTGGCTTTGGGTT+TGG + chr3_4:77455248-77455267 Msa0524020:three_prime_UTR 45.0%
ATTACAACATGCGCTCAAGG+CGG - chr3_4:77455371-77455390 None:intergenic 45.0%
TTGCTGTAGATGGAGACGTG+AGG - chr3_4:77452516-77452535 None:intergenic 50.0%
CACAAGAGTCGAGTGCAGAT+TGG - chr3_4:77452564-77452583 None:intergenic 50.0%
CAATCTGCACTCGACTCTTG+TGG + chr3_4:77452562-77452581 Msa0524020:intron 50.0%
CGACTCTTGTGGCTTCTTCA+TGG + chr3_4:77452573-77452592 Msa0524020:intron 50.0%
GGAAGAGGACTGTTTCCTGA+AGG + chr3_4:77454282-77454301 Msa0524020:three_prime_UTR 50.0%
CTCTCTCTCCACATTCCTTC+AGG - chr3_4:77454300-77454319 None:intergenic 50.0%
GATCAGCCTTAGGACATGGA+GGG - chr3_4:77454351-77454370 None:intergenic 50.0%
TGATCAGCCTTAGGACATGG+AGG - chr3_4:77454352-77454371 None:intergenic 50.0%
CAGTTAAGGAGTCCAGACCT+TGG - chr3_4:77454595-77454614 None:intergenic 50.0%
AGAGCACACTCCAAACCACT+AGG - chr3_4:77454756-77454775 None:intergenic 50.0%
TCTACCACTGCTCTGTGTAC+TGG - chr3_4:77454993-77455012 None:intergenic 50.0%
!! TTCGTGTTGGTGGTAGCCTT+TGG + chr3_4:77455285-77455304 Msa0524020:three_prime_UTR 50.0%
CCTTCAGTATCAACCGTGCC+TGG - chr3_4:77452811-77452830 None:intergenic 55.0%
! CCAGGCACGGTTGATACTGA+AGG + chr3_4:77452808-77452827 Msa0524020:CDS 55.0%
CTGCTCTGTGTACTGGACTC+TGG - chr3_4:77454986-77455005 None:intergenic 55.0%
GAGTCCAGTACACAGAGCAG+TGG + chr3_4:77454986-77455005 Msa0524020:three_prime_UTR 55.0%
CAAAAATGTGCTCGGGGGCC+AGG + chr3_4:77452790-77452809 Msa0524020:CDS 60.0%
ATGTGCTCGGGGGCCAGGCA+CGG + chr3_4:77452795-77452814 Msa0524020:CDS 70.0%
Chromosome Type Strat End Strand Name
chr3_4 gene 77452253 77455452 77452253 ID=Msa0524020;Name=Msa0524020
chr3_4 mRNA 77452253 77455452 77452253 ID=Msa0524020-mRNA-1;Parent=Msa0524020;Name=Msa0524020-mRNA-1;_AED=0.43;_eAED=0.43;_QI=0|0.25|0.4|0.8|1|1|5|773|82
chr3_4 exon 77452253 77452258 77452253 ID=Msa0524020-mRNA-1:exon:22714;Parent=Msa0524020-mRNA-1
chr3_4 exon 77452703 77452894 77452703 ID=Msa0524020-mRNA-1:exon:22715;Parent=Msa0524020-mRNA-1
chr3_4 exon 77453112 77453117 77453112 ID=Msa0524020-mRNA-1:exon:22716;Parent=Msa0524020-mRNA-1
chr3_4 exon 77454201 77454528 77454201 ID=Msa0524020-mRNA-1:exon:22717;Parent=Msa0524020-mRNA-1
chr3_4 exon 77454963 77455452 77454963 ID=Msa0524020-mRNA-1:exon:22718;Parent=Msa0524020-mRNA-1
chr3_4 CDS 77452253 77452258 77452253 ID=Msa0524020-mRNA-1:cds;Parent=Msa0524020-mRNA-1
chr3_4 CDS 77452703 77452894 77452703 ID=Msa0524020-mRNA-1:cds;Parent=Msa0524020-mRNA-1
chr3_4 CDS 77453112 77453117 77453112 ID=Msa0524020-mRNA-1:cds;Parent=Msa0524020-mRNA-1
chr3_4 CDS 77454201 77454245 77454201 ID=Msa0524020-mRNA-1:cds;Parent=Msa0524020-mRNA-1
chr3_4 three_prime_UTR 77454246 77454528 77454246 ID=Msa0524020-mRNA-1:three_prime_utr;Parent=Msa0524020-mRNA-1
chr3_4 three_prime_UTR 77454963 77455452 77454963 ID=Msa0524020-mRNA-1:three_prime_utr;Parent=Msa0524020-mRNA-1
Gene Sequence

>Msa0524020

ATGCAAGCAATCAACCATGGTATGACAAGCTTGTTTCTTGACAAAGTGAGGGAAGTTTCAAGGCAATTCTTTGAACTTCCAAAGGAAGAAAAGCAAAAATGTGCTCGGGGGCCAGGCACGGTTGATACTGAAGGATATGGAAATGATAATTATTCAGATCTTAAAAGGAGTGATTGGGCTGATAGAGTATATCTGAAGCGTAAAGAATACTACACAACAATATACCGAATGTGTATTGCAGTTATATGA

Protein sequence

>Msa0524020

MQAINHGMTSLFLDKVREVSRQFFELPKEEKQKCARGPGTVDTEGYGNDNYSDLKRSDWADRVYLKRKEYYTTIYRMCIAVI*