AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1050900

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1050900 MtrunA17_Chr7g0220221 99.119 227 2 0 1 227 1 227 2.06e-169 465
Msa1050900 MtrunA17_Chr6g0455521 71.681 226 64 0 1 226 1 226 5.21e-122 345
Msa1050900 MtrunA17_Chr7g0248061 34.021 194 104 4 34 223 13 186 1.44e-25 98.6
Msa1050900 MtrunA17_Chr8g0348651 36.196 163 84 2 61 223 44 186 1.03e-23 94.0
Msa1050900 MtrunA17_Chr8g0387191 35.000 180 101 6 50 223 33 202 6.37e-23 92.0
Msa1050900 MtrunA17_Chr2g0322261 45.312 64 33 1 156 217 14 77 5.59e-13 67.4
Msa1050900 MtrunA17_Chr7g0267851 41.667 60 33 1 160 217 29 88 3.78e-11 61.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1050900 AT5G15790.2 55.603 232 98 3 1 227 1 232 1.79e-88 261
Msa1050900 AT5G15790.5 55.603 232 98 3 1 227 1 232 1.79e-88 261
Msa1050900 AT5G15790.1 55.603 232 98 3 1 227 1 232 1.79e-88 261
Msa1050900 AT5G15790.3 55.603 232 98 3 1 227 1 232 1.79e-88 261
Msa1050900 AT5G38895.1 53.304 227 96 2 1 226 1 218 1.26e-87 258
Msa1050900 AT5G38895.2 53.304 227 96 2 1 226 76 293 1.07e-86 259
Msa1050900 AT5G38895.3 53.304 227 96 2 1 226 115 332 3.30e-86 259
Msa1050900 AT5G15790.4 54.741 232 100 3 1 227 1 232 3.77e-86 256
Msa1050900 AT3G02290.6 58.298 235 86 4 1 227 1 231 3.86e-83 247
Msa1050900 AT3G02290.4 58.298 235 86 4 1 227 1 231 3.86e-83 247
Msa1050900 AT3G02290.1 58.298 235 86 4 1 227 1 231 3.86e-83 247
Msa1050900 AT3G02290.2 58.298 235 86 4 1 227 1 231 3.86e-83 247
Msa1050900 AT3G02290.3 58.298 235 86 4 1 227 1 231 3.86e-83 247
Msa1050900 AT3G02290.5 58.009 231 85 4 1 223 1 227 3.47e-80 240
Msa1050900 AT5G41350.1 35.593 177 100 5 55 226 43 210 1.87e-24 96.7
Msa1050900 AT5G41350.3 35.593 177 100 5 55 226 43 210 1.87e-24 96.7
Msa1050900 AT5G41350.2 36.000 175 98 5 55 224 68 233 3.18e-24 96.7
Msa1050900 AT1G69085.1 65.455 55 19 0 171 225 54 108 1.20e-21 86.7
Msa1050900 AT4G00335.2 33.333 183 91 6 51 225 28 187 5.84e-21 87.0
Msa1050900 AT4G00335.1 33.333 183 91 6 51 225 28 187 5.84e-21 87.0
Msa1050900 AT4G00335.3 33.333 183 91 6 51 225 28 187 5.84e-21 87.0
Msa1050900 AT4G23450.5 58.182 55 23 0 172 226 99 153 3.11e-17 76.3
Msa1050900 AT4G23450.1 58.182 55 23 0 172 226 99 153 3.11e-17 76.3
Msa1050900 AT4G23450.6 58.182 55 23 0 172 226 99 153 3.11e-17 76.3
Msa1050900 AT4G23450.4 58.182 55 23 0 172 226 99 153 3.11e-17 76.3
Msa1050900 AT4G23450.3 58.182 55 23 0 172 226 154 208 5.87e-17 76.6
Msa1050900 AT4G23450.2 58.182 55 23 0 172 226 154 208 5.87e-17 76.6
Msa1050900 AT4G14220.1 45.161 62 31 1 165 223 31 92 6.30e-13 67.4
Msa1050900 AT5G22000.2 42.647 68 37 1 152 217 6 73 4.79e-12 65.1
Msa1050900 AT5G22000.3 43.750 64 34 1 156 217 10 73 7.84e-12 64.3
Msa1050900 AT5G22000.1 43.750 64 34 1 156 217 10 73 7.84e-12 64.3

Find 85 sgRNAs with CRISPR-Local

Find 331 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGATGTTGAAATTGTGAAAT+TGG 0.198834 7_2:-17088128 None:intergenic
CGTTTAATCACGAAAGATTA+TGG 0.237622 7_2:-17093214 None:intergenic
TCTTTCTTCCTTGCCAGTTT+TGG 0.246971 7_2:-17093417 None:intergenic
TATTTCTCTCTATCATTGAT+AGG 0.296957 7_2:+17088064 Msa1050900:five_prime_UTR
CCACTCGAACTCAAAGATTC+TGG 0.334628 7_2:-17091000 None:intergenic
ATTCATCAATATTCCGTAGA+AGG 0.334711 7_2:+17090746 Msa1050900:CDS
ATGAAGAGTCAGAACCTCTA+AGG 0.349845 7_2:+17090959 Msa1050900:CDS
GATGTTGAAATTGTGAAATT+GGG 0.352723 7_2:-17088127 None:intergenic
TGTAATCACCATTATCATCT+TGG 0.369381 7_2:+17091895 Msa1050900:CDS
TTGCTTCCTACAAAACATTT+CGG 0.374780 7_2:+17089674 Msa1050900:CDS
TGTCATTGGTTCGTGCTGTT+GGG 0.378835 7_2:+17089446 Msa1050900:five_prime_UTR
AGAATTGCGCATTAAATCAT+AGG 0.389410 7_2:-17088042 None:intergenic
GGCGCTTCCTTCATCTGTAC+AGG 0.397993 7_2:+17090777 Msa1050900:CDS
ACATCCACATCAACCCTTAG+AGG 0.398565 7_2:-17090973 None:intergenic
GCATCATAAGGTAACGGCCT+TGG 0.417133 7_2:-17090865 None:intergenic
TTTCAGAGTTTGCCTTGTAA+TGG 0.419598 7_2:+17093477 Msa1050900:three_prime_UTR
TCGTCAGCAAAACTTACAAC+TGG 0.421306 7_2:+17091090 Msa1050900:CDS
ATATGCAACCAAGATGATAA+TGG 0.428358 7_2:-17091903 None:intergenic
AATATTACCTTCCCACAAAC+AGG 0.432696 7_2:-17091955 None:intergenic
TTGTCATTGGTTCGTGCTGT+TGG 0.433728 7_2:+17089445 Msa1050900:five_prime_UTR
TGACTCTTCATTCAAATGAC+TGG 0.466664 7_2:-17090947 None:intergenic
CTTTGAGTTCGAGTGGTAAG+TGG 0.471217 7_2:+17091007 Msa1050900:CDS
AAAGAATCCACCGGAAAAGA+TGG 0.473727 7_2:+17091030 Msa1050900:CDS
CGAAAGTCTTACTGAGGACT+TGG 0.474607 7_2:-17091070 None:intergenic
TGCTGTGAGCGGAAATGCCT+AGG 0.475931 7_2:-17090892 None:intergenic
GCGCCTGCATTTCCCTTCTA+CGG 0.477472 7_2:-17090759 None:intergenic
GTCATTGGTTCGTGCTGTTG+GGG 0.482619 7_2:+17089447 Msa1050900:five_prime_UTR
TGCCTAGGGTCTGCATCATA+AGG 0.490563 7_2:-17090877 None:intergenic
TGTTGTCCAACATGTCTTGA+AGG 0.500625 7_2:+17091150 Msa1050900:CDS
AGTGACAGCTGTCCTGTTTG+TGG 0.508370 7_2:+17091943 Msa1050900:CDS
ACTTGTTTCAAGACGTGAGA+AGG 0.512160 7_2:+17090921 Msa1050900:CDS
GCGCTTCCTTCATCTGTACA+GGG 0.517323 7_2:+17090778 Msa1050900:CDS
ATCCACATAGTCATGTGTAT+AGG 0.525675 7_2:+17089634 Msa1050900:CDS
AGAGGAGAAAAGTATAAATG+AGG 0.527201 7_2:-17093393 None:intergenic
CGAGGGAGGGTACTAGTTTG+CGG 0.528858 7_2:+17089369 Msa1050900:five_prime_UTR
TTCAGATTGAATCTTTGTCA+TGG 0.530429 7_2:+17093447 Msa1050900:three_prime_UTR
TCATAAGGTAACGGCCTTGG+AGG 0.533910 7_2:-17090862 None:intergenic
CTCCTCTGCCAAAACTGGCA+AGG 0.535386 7_2:+17093409 Msa1050900:three_prime_UTR
GAAGAAATCCTTCCATTACA+AGG 0.536307 7_2:-17093489 None:intergenic
GTTCAAACTTACAATCATGA+TGG 0.540605 7_2:-17093354 None:intergenic
AGAGTTTGCCTTGTAATGGA+AGG 0.542103 7_2:+17093481 Msa1050900:three_prime_UTR
TTCATCAATATTCCGTAGAA+GGG 0.549107 7_2:+17090747 Msa1050900:CDS
CTTGTTTCAAGACGTGAGAA+GGG 0.550647 7_2:+17090922 Msa1050900:CDS
AGAGTCTTAGACTGAAAGAA+GGG 0.553763 7_2:+17089539 Msa1050900:five_prime_UTR
ATTCCGTAGAAGGGAAATGC+AGG 0.562146 7_2:+17090756 Msa1050900:CDS
GTGACAGCTGTCCTGTTTGT+GGG 0.566634 7_2:+17091944 Msa1050900:CDS
AAGTTACCTTCAAGACATGT+TGG 0.571053 7_2:-17091156 None:intergenic
AAGAGTCTTAGACTGAAAGA+AGG 0.574509 7_2:+17089538 Msa1050900:five_prime_UTR
AAGAATCCACCGGAAAAGAT+GGG 0.575796 7_2:+17091031 Msa1050900:CDS
ATGTTGAAATTGTGAAATTG+GGG 0.579804 7_2:-17088126 None:intergenic
AGATATACCGTTCTCCTCCA+AGG 0.579863 7_2:+17090848 Msa1050900:CDS
TGAAGAGTCAGAACCTCTAA+GGG 0.583867 7_2:+17090960 Msa1050900:CDS
TTCCTATACACATGACTATG+TGG 0.586658 7_2:-17089636 None:intergenic
TGGTTGCATATACGAGTGGA+TGG 0.587414 7_2:+17091915 Msa1050900:CDS
GCTGTGAGCGGAAATGCCTA+GGG 0.588359 7_2:-17090891 None:intergenic
AGAACCTCTAAGGGTTGATG+TGG 0.590546 7_2:+17090969 Msa1050900:CDS
TGACAACACTTTCGAAAACA+AGG 0.594697 7_2:-17089428 None:intergenic
CCAGAATCTTTGAGTTCGAG+TGG 0.597311 7_2:+17091000 Msa1050900:CDS
GGGTCTGCATCATAAGGTAA+CGG 0.597642 7_2:-17090871 None:intergenic
CACCGGAAAAGATGGGTCAA+AGG 0.597790 7_2:+17091038 Msa1050900:CDS
TACCTTATGATGCAGACCCT+AGG 0.614377 7_2:+17090875 Msa1050900:CDS
TGAGAGATTGATGATGAAGG+TGG 0.615085 7_2:-17088180 None:intergenic
CGCTTCCTTCATCTGTACAG+GGG 0.615527 7_2:+17090779 Msa1050900:CDS
ATCATCTGAACAAACGAGGG+AGG 0.617476 7_2:+17089355 Msa1050900:five_prime_UTR
TATAGGAACTGCGTTTGTGT+CGG 0.618127 7_2:+17089651 Msa1050900:CDS
TTGCAGGTGATCAAGAGAGT+CGG 0.619347 7_2:+17089310 Msa1050900:intron
ATCTTGGTTGCATATACGAG+TGG 0.623166 7_2:+17091911 Msa1050900:CDS
TCATCTGAACAAACGAGGGA+GGG 0.623604 7_2:+17089356 Msa1050900:five_prime_UTR
TTGTGAGAGATTGATGATGA+AGG 0.624657 7_2:-17088183 None:intergenic
TGTGTATGCATCATCAGAAG+AGG 0.628234 7_2:+17091122 Msa1050900:CDS
CAGCTGTCCTGTTTGTGGGA+AGG 0.631029 7_2:+17091948 Msa1050900:CDS
CAAGTCCGTCATGCTGTGAG+CGG 0.633869 7_2:-17090903 None:intergenic
GTAACGGCCTTGGAGGAGAA+CGG 0.636124 7_2:-17090855 None:intergenic
GTATGCATCATCAGAAGAGG+AGG 0.639945 7_2:+17091125 Msa1050900:CDS
TGCTGACGAAAGTCTTACTG+AGG 0.641679 7_2:-17091076 None:intergenic
ACTTTCGAAAACAAGGAGAG+AGG 0.645074 7_2:-17089421 None:intergenic
TCATTGGTTCGTGCTGTTGG+GGG 0.651624 7_2:+17089448 Msa1050900:five_prime_UTR
GGTAAGTGGAAAGAATCCAC+CGG 0.653432 7_2:+17091021 Msa1050900:CDS
GCTTCCTTCATCTGTACAGG+GGG 0.654449 7_2:+17090780 Msa1050900:CDS
GAGTCTTAGACTGAAAGAAG+GGG 0.654534 7_2:+17089540 Msa1050900:five_prime_UTR
GTCTTACTGAGGACTTGGAA+CGG 0.666475 7_2:-17091065 None:intergenic
CATTTCCGCTCACAGCATGA+CGG 0.669127 7_2:+17090898 Msa1050900:CDS
CAGATCATCTGAACAAACGA+GGG 0.691520 7_2:+17089352 Msa1050900:five_prime_UTR
GGGAGGGTACTAGTTTGCGG+AGG 0.704838 7_2:+17089372 Msa1050900:five_prime_UTR
ACAGATCATCTGAACAAACG+AGG 0.713669 7_2:+17089351 Msa1050900:five_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATATTATATTATATTATATT+AGG + chr7_2:17090127-17090146 Msa1050900:intron 0.0%
!!! GTTAAAATTTAGATTTTTTT+GGG - chr7_2:17089066-17089085 None:intergenic 10.0%
!!! TGTTAATTTTAATATTTGTA+TGG + chr7_2:17089111-17089130 Msa1050900:intron 10.0%
!!! ACTTCAATTTTTTTTTTAAT+TGG + chr7_2:17089261-17089280 Msa1050900:intron 10.0%
!! TATTATATTATATTAGGATT+AGG + chr7_2:17090213-17090232 Msa1050900:intron 10.0%
!! TATTGTATTATATTAGAATT+AGG + chr7_2:17090358-17090377 Msa1050900:intron 10.0%
!! AAAAAAAAAAAACTGTAAAA+CGG - chr7_2:17091519-17091538 None:intergenic 10.0%
!!! TTTTACAGTTTTTTTTTTTT+GGG + chr7_2:17091519-17091538 Msa1050900:intron 10.0%
!! ATAATATTACAATTAAGAAT+TGG - chr7_2:17091716-17091735 None:intergenic 10.0%
!!! TAAATTTTGTTTGTATAAAT+TGG + chr7_2:17091735-17091754 Msa1050900:intron 10.0%
!! ATTTGAATTTAATATATTTG+TGG + chr7_2:17093039-17093058 Msa1050900:intron 10.0%
!! TGAAATAAAAAGTCAAAAAA+GGG - chr7_2:17088296-17088315 None:intergenic 15.0%
!! ATGAAATAAAAAGTCAAAAA+AGG - chr7_2:17088297-17088316 None:intergenic 15.0%
!!! TTGTACTAATTTTTTTAACA+TGG + chr7_2:17088721-17088740 Msa1050900:intron 15.0%
!!! GGTTAAAATTTAGATTTTTT+TGG - chr7_2:17089067-17089086 None:intergenic 15.0%
!!! AATCTAAATTTTAACCTTTA+AGG + chr7_2:17089071-17089090 Msa1050900:intron 15.0%
!!! ATCTAAATTTTAACCTTTAA+GGG + chr7_2:17089072-17089091 Msa1050900:intron 15.0%
!! AAAAAATTTGCATTGAAATT+TGG - chr7_2:17089964-17089983 None:intergenic 15.0%
!! AATTTACAATAAGATACTTA+CGG - chr7_2:17090567-17090586 None:intergenic 15.0%
!!! TTGACTTAATTTGTTTAATT+CGG + chr7_2:17091278-17091297 Msa1050900:intron 15.0%
!!! GTTTTACAGTTTTTTTTTTT+TGG + chr7_2:17091518-17091537 Msa1050900:intron 15.0%
!!! TATTTTTTACCATAGTTTGA+AGG + chr7_2:17088598-17088617 Msa1050900:intron 20.0%
!!! TTTTGTTATTCTTTAAGCTT+TGG + chr7_2:17088697-17088716 Msa1050900:intron 20.0%
!!! TTTTTATGTTCCATAATCTA+AGG + chr7_2:17089768-17089787 Msa1050900:intron 20.0%
!!! TTTTATATCTAAAATCCTTC+TGG + chr7_2:17089992-17090011 Msa1050900:intron 20.0%
!! ATTGGAAAAAAGTTATATGA+TGG - chr7_2:17090709-17090728 None:intergenic 20.0%
!! ATTTCATACTGTTTAATACT+AGG + chr7_2:17091184-17091203 Msa1050900:intron 20.0%
!!! TGACTTAATTTGTTTAATTC+GGG + chr7_2:17091279-17091298 Msa1050900:intron 20.0%
!!! TCACATGTTTTGATTTTAAT+TGG + chr7_2:17092236-17092255 Msa1050900:intron 20.0%
!! TTACTAATTTACATATGATC+TGG + chr7_2:17092518-17092537 Msa1050900:intron 20.0%
!!! CATAGTTTGATTGATTTAAT+CGG - chr7_2:17092566-17092585 None:intergenic 20.0%
!!! AGTGTTTATAATTTGCAATA+AGG - chr7_2:17092896-17092915 None:intergenic 20.0%
!!! TTTTATTTTTGTTTTGATGC+AGG + chr7_2:17093171-17093190 Msa1050900:intron 20.0%
! TATTTCTCTCTATCATTGAT+AGG + chr7_2:17088064-17088083 Msa1050900:five_prime_UTR 25.0%
!!! AATTGGGGTTTTCTAAAAAA+GGG - chr7_2:17088114-17088133 None:intergenic 25.0%
!!! AAATTGGGGTTTTCTAAAAA+AGG - chr7_2:17088115-17088134 None:intergenic 25.0%
! ATGTTGAAATTGTGAAATTG+GGG - chr7_2:17088129-17088148 None:intergenic 25.0%
! GATGTTGAAATTGTGAAATT+GGG - chr7_2:17088130-17088149 None:intergenic 25.0%
! TGATGTTGAAATTGTGAAAT+TGG - chr7_2:17088131-17088150 None:intergenic 25.0%
!!! TTTTATTTCATTATCGCAAC+TGG + chr7_2:17088306-17088325 Msa1050900:intron 25.0%
! TTTATTTCATTATCGCAACT+GGG + chr7_2:17088307-17088326 Msa1050900:intron 25.0%
!!! CTGCTATGTTTTTATGATTA+TGG + chr7_2:17088462-17088481 Msa1050900:intron 25.0%
! TATAATGTTCCTTCAAACTA+TGG - chr7_2:17088610-17088629 None:intergenic 25.0%
! AACAAATTTGAGTGTTTCAA+GGG - chr7_2:17088650-17088669 None:intergenic 25.0%
!!! GACTAGTTTGAAATACAAAT+AGG - chr7_2:17088868-17088887 None:intergenic 25.0%
!! GAAAAACTTTTGACAAAGAT+AGG + chr7_2:17088960-17088979 Msa1050900:intron 25.0%
!! TTTGAAATATTGATAGAGTC+AGG + chr7_2:17088989-17089008 Msa1050900:intron 25.0%
! TTGAAATATTGATAGAGTCA+GGG + chr7_2:17088990-17089009 Msa1050900:intron 25.0%
! AACATGATCAATCAAAACAA+CGG - chr7_2:17089223-17089242 None:intergenic 25.0%
!!! AAATTTTGAAGCTGAAATCA+TGG + chr7_2:17089563-17089582 Msa1050900:exon 25.0%
!!! AATTTTGAAGCTGAAATCAT+GGG + chr7_2:17089564-17089583 Msa1050900:exon 25.0%
! TCAAACAAATCCTTAGATTA+TGG - chr7_2:17089781-17089800 None:intergenic 25.0%
! ACTACATTATCCTTTATACT+CGG - chr7_2:17090268-17090287 None:intergenic 25.0%
! AAGACATTATCCTTTATACT+CGG - chr7_2:17090413-17090432 None:intergenic 25.0%
! ACAACTCAAATGAAATAATG+TGG - chr7_2:17090296-17090315 None:intergenic 25.0%
!! CAAAACAAAGAATAGTCTTA+CGG + chr7_2:17090483-17090502 Msa1050900:intron 25.0%
! GTAGAAAATATAAACACACT+TGG - chr7_2:17090605-17090624 None:intergenic 25.0%
! TTGATGAATACTGAAATTCA+AGG - chr7_2:17090735-17090754 None:intergenic 25.0%
!! ATTCGGGTATTATAATTTTG+TGG + chr7_2:17091295-17091314 Msa1050900:intron 25.0%
!! ATAATTTTGTGGTATACTTG+TGG + chr7_2:17091306-17091325 Msa1050900:intron 25.0%
! ATAAAATCTGTCTGTAAACA+TGG - chr7_2:17091426-17091445 None:intergenic 25.0%
! AAGCATAATGTGAATGAATA+AGG - chr7_2:17091562-17091581 None:intergenic 25.0%
!! TTACATTTTGTCACTATCTT+CGG - chr7_2:17091880-17091899 None:intergenic 25.0%
! TTTAATTGGAAATCTGCTAA+AGG + chr7_2:17092250-17092269 Msa1050900:intron 25.0%
! TTAATTGGAAATCTGCTAAA+GGG + chr7_2:17092251-17092270 Msa1050900:intron 25.0%
! AATCATATAGAATCTCACTT+TGG - chr7_2:17092277-17092296 None:intergenic 25.0%
!!! TTACCGAACGTTTTAAAAAT+TGG + chr7_2:17092298-17092317 Msa1050900:intron 25.0%
!! ATATTCAGGTTAAGAAAACA+AGG - chr7_2:17092710-17092729 None:intergenic 25.0%
! CATTATAGAAAGAAGATCAT+AGG - chr7_2:17092993-17093012 None:intergenic 25.0%
AGAATTGCGCATTAAATCAT+AGG - chr7_2:17088045-17088064 None:intergenic 30.0%
!! GTTTTCTAAAAAAGGGGTTT+TGG - chr7_2:17088107-17088126 None:intergenic 30.0%
!! ATTGGGGTTTTCTAAAAAAG+GGG - chr7_2:17088113-17088132 None:intergenic 30.0%
GTCAAAAAAGGGATGAAAAA+CGG - chr7_2:17088285-17088304 None:intergenic 30.0%
CAACAAATTTGAGTGTTTCA+AGG - chr7_2:17088651-17088670 None:intergenic 30.0%
GAAGGTTAAAACCATCAAAT+TGG + chr7_2:17088819-17088838 Msa1050900:intron 30.0%
AAAGACAAAGACCAATTTGA+TGG - chr7_2:17088833-17088852 None:intergenic 30.0%
TTGAAATACAAATAGGAGAG+TGG - chr7_2:17088861-17088880 None:intergenic 30.0%
TTGTATTTCAAACTAGTCCT+TGG + chr7_2:17088870-17088889 Msa1050900:intron 30.0%
TTGTCAAAAGTCTCTCAATT+AGG + chr7_2:17088895-17088914 Msa1050900:intron 30.0%
! CAAAACAACGGTTTTTCTTA+AGG - chr7_2:17089211-17089230 None:intergenic 30.0%
TTGCTTCCTACAAAACATTT+CGG + chr7_2:17089674-17089693 Msa1050900:CDS 30.0%
CTACATTATCCTTTATACTC+GGG - chr7_2:17090267-17090286 None:intergenic 30.0%
AGACATTATCCTTTATACTC+GGG - chr7_2:17090412-17090431 None:intergenic 30.0%
ATGAATACTGAAATTCAAGG+TGG - chr7_2:17090732-17090751 None:intergenic 30.0%
ATTCATCAATATTCCGTAGA+AGG + chr7_2:17090746-17090765 Msa1050900:CDS 30.0%
TTCATCAATATTCCGTAGAA+GGG + chr7_2:17090747-17090766 Msa1050900:CDS 30.0%
AATTGAGTTCAAACATCAAG+TGG - chr7_2:17091225-17091244 None:intergenic 30.0%
! CTCAATTTTGTACGAAATGT+AGG + chr7_2:17091238-17091257 Msa1050900:intron 30.0%
! GACAGATTTTATGTGTTTCA+CGG + chr7_2:17091434-17091453 Msa1050900:intron 30.0%
!! TCAAAATTAAGGGTGTCTTA+GGG - chr7_2:17091495-17091514 None:intergenic 30.0%
GTAAAACGGCTCAAAATTAA+GGG - chr7_2:17091505-17091524 None:intergenic 30.0%
TGTAAAACGGCTCAAAATTA+AGG - chr7_2:17091506-17091525 None:intergenic 30.0%
TACTGTAATAGTCTGTTTGT+TGG - chr7_2:17091791-17091810 None:intergenic 30.0%
AAACAGACTATTACAGTAAC+AGG + chr7_2:17091793-17091812 Msa1050900:intron 30.0%
TGTAATCACCATTATCATCT+TGG + chr7_2:17091895-17091914 Msa1050900:CDS 30.0%
ATATGCAACCAAGATGATAA+TGG - chr7_2:17091906-17091925 None:intergenic 30.0%
!! CTTTTTCACTGAATTGCTTT+TGG + chr7_2:17092000-17092019 Msa1050900:intron 30.0%
!!! AACTCTTTTCTGGTTTGTAT+TGG - chr7_2:17092174-17092193 None:intergenic 30.0%
!!! CGTCCAATTTTTAAAACGTT+CGG - chr7_2:17092304-17092323 None:intergenic 30.0%
!!! CGAACGTTTTAAAAATTGGA+CGG + chr7_2:17092302-17092321 Msa1050900:intron 30.0%
!!! GAACGTTTTAAAAATTGGAC+GGG + chr7_2:17092303-17092322 Msa1050900:intron 30.0%
! TGATTTAATCGGTTTAACCA+TGG - chr7_2:17092555-17092574 None:intergenic 30.0%
!! TTTTACCCAATAAAGTGCTT+TGG + chr7_2:17092637-17092656 Msa1050900:intron 30.0%
! TTTACCCAATAAAGTGCTTT+GGG + chr7_2:17092638-17092657 Msa1050900:intron 30.0%
AAGATGACTACACTATATTC+AGG - chr7_2:17092724-17092743 None:intergenic 30.0%
!!! GTCATCTTTTAAGAAGTATC+TGG + chr7_2:17092736-17092755 Msa1050900:intron 30.0%
GAAAGAATTCTGATGAAAAG+GGG - chr7_2:17092785-17092804 None:intergenic 30.0%
CGAAAGAATTCTGATGAAAA+GGG - chr7_2:17092786-17092805 None:intergenic 30.0%
ACGAAAGAATTCTGATGAAA+AGG - chr7_2:17092787-17092806 None:intergenic 30.0%
! GAATATGTTACTTGATCGTA+TGG + chr7_2:17092810-17092829 Msa1050900:intron 30.0%
CGTTTAATCACGAAAGATTA+TGG - chr7_2:17093217-17093236 None:intergenic 30.0%
GTTCAAACTTACAATCATGA+TGG - chr7_2:17093357-17093376 None:intergenic 30.0%
! AGAGGAGAAAAGTATAAATG+AGG - chr7_2:17093396-17093415 None:intergenic 30.0%
TTCAGATTGAATCTTTGTCA+TGG + chr7_2:17093447-17093466 Msa1050900:three_prime_UTR 30.0%
!! TTGTGAGAGATTGATGATGA+AGG - chr7_2:17088186-17088205 None:intergenic 35.0%
CGTTAGAAAAAACCTTTCTC+AGG + chr7_2:17088214-17088233 Msa1050900:five_prime_UTR 35.0%
! GGAAAAAGGTTGGATTTTGA+GGG - chr7_2:17088242-17088261 None:intergenic 35.0%
GTAAACGAGAAAAGGGAAAA+AGG - chr7_2:17088256-17088275 None:intergenic 35.0%
GAATTGGGTAAACGAGAAAA+GGG - chr7_2:17088263-17088282 None:intergenic 35.0%
AAGGGATGAAAAACGGAATT+GGG - chr7_2:17088278-17088297 None:intergenic 35.0%
AAAGGGATGAAAAACGGAAT+TGG - chr7_2:17088279-17088298 None:intergenic 35.0%
TGATCAAAAGTTCAGCTTAG+AGG - chr7_2:17088773-17088792 None:intergenic 35.0%
! AGCTGAACTTTTGATCAACT+TGG + chr7_2:17088776-17088795 Msa1050900:intron 35.0%
! GCTGAACTTTTGATCAACTT+GGG + chr7_2:17088777-17088796 Msa1050900:intron 35.0%
! AGAGACTTTTGACAAATCCA+AGG - chr7_2:17088890-17088909 None:intergenic 35.0%
!! ATGTTTTTGTCACATGACGA+GGG - chr7_2:17088922-17088941 None:intergenic 35.0%
GTGACAAAAACATGAATACG+AGG + chr7_2:17088929-17088948 Msa1050900:intron 35.0%
!! TGGTGATGTTTATGCGATTT+TGG + chr7_2:17089281-17089300 Msa1050900:intron 35.0%
!!! GCGATTTTGGTTTATTTTGC+AGG + chr7_2:17089294-17089313 Msa1050900:intron 35.0%
TGACAACACTTTCGAAAACA+AGG - chr7_2:17089431-17089450 None:intergenic 35.0%
!!! GTTTTCGAAAGTGTTGTCAT+TGG + chr7_2:17089432-17089451 Msa1050900:five_prime_UTR 35.0%
AAGAGTCTTAGACTGAAAGA+AGG + chr7_2:17089538-17089557 Msa1050900:five_prime_UTR 35.0%
AGAGTCTTAGACTGAAAGAA+GGG + chr7_2:17089539-17089558 Msa1050900:five_prime_UTR 35.0%
ATCCACATAGTCATGTGTAT+AGG + chr7_2:17089634-17089653 Msa1050900:CDS 35.0%
TTCCTATACACATGACTATG+TGG - chr7_2:17089639-17089658 None:intergenic 35.0%
GGTCAACCAATCAATAACTT+CGG + chr7_2:17089930-17089949 Msa1050900:intron 35.0%
CAATCAATAACTTCGGATGA+CGG + chr7_2:17089937-17089956 Msa1050900:intron 35.0%
TACTGAAATTCAAGGTGGAT+TGG - chr7_2:17090727-17090746 None:intergenic 35.0%
TGACTCTTCATTCAAATGAC+TGG - chr7_2:17090950-17090969 None:intergenic 35.0%
AAGTTACCTTCAAGACATGT+TGG - chr7_2:17091159-17091178 None:intergenic 35.0%
AACAATTAGTGCCAGTATTG+CGG + chr7_2:17091347-17091366 Msa1050900:intron 35.0%
AAATCTGTCTGTAAACATGG+AGG - chr7_2:17091423-17091442 None:intergenic 35.0%
!! CTCAAAATTAAGGGTGTCTT+AGG - chr7_2:17091496-17091515 None:intergenic 35.0%
AATATTACCTTCCCACAAAC+AGG - chr7_2:17091958-17091977 None:intergenic 35.0%
TGGAAATGACTGATCAAAGT+TGG - chr7_2:17092154-17092173 None:intergenic 35.0%
! GTAGAATTGGAACTCTTTTC+TGG - chr7_2:17092184-17092203 None:intergenic 35.0%
GATCTCACTAGTTCAATCTT+TGG + chr7_2:17092593-17092612 Msa1050900:intron 35.0%
! TCTTCCCAAAGCACTTTATT+GGG - chr7_2:17092645-17092664 None:intergenic 35.0%
AAAACAAGGAATCCATGTAG+AGG - chr7_2:17092696-17092715 None:intergenic 35.0%
CAGTGAACTACAATTGCATT+AGG - chr7_2:17092856-17092875 None:intergenic 35.0%
CTAATGCAATTGTAGTTCAC+TGG + chr7_2:17092854-17092873 Msa1050900:intron 35.0%
! TTTCGTTTTGCTTCTGTTGT+TGG - chr7_2:17093259-17093278 None:intergenic 35.0%
TTTCAGAGTTTGCCTTGTAA+TGG + chr7_2:17093477-17093496 Msa1050900:three_prime_UTR 35.0%
GAAGAAATCCTTCCATTACA+AGG - chr7_2:17093492-17093511 None:intergenic 35.0%
!! AAAAGGGGTTTTGGCGTTTT+CGG - chr7_2:17088098-17088117 None:intergenic 40.0%
!! TGAGAGATTGATGATGAAGG+TGG - chr7_2:17088183-17088202 None:intergenic 40.0%
!!! ATTTTGAGGGTACCTGAGAA+AGG - chr7_2:17088229-17088248 None:intergenic 40.0%
! GGGAAAAAGGTTGGATTTTG+AGG - chr7_2:17088243-17088262 None:intergenic 40.0%
ACGAGAAAAGGGAAAAAGGT+TGG - chr7_2:17088252-17088271 None:intergenic 40.0%
GGAATTGGGTAAACGAGAAA+AGG - chr7_2:17088264-17088283 None:intergenic 40.0%
!! CATGTTTTTGTCACATGACG+AGG - chr7_2:17088923-17088942 None:intergenic 40.0%
GTCAGGGACTAATTTGAGAA+TGG + chr7_2:17089006-17089025 Msa1050900:intron 40.0%
TGAGAATGGCTTACAAAGAC+AGG + chr7_2:17089020-17089039 Msa1050900:intron 40.0%
GAGAATGGCTTACAAAGACA+GGG + chr7_2:17089021-17089040 Msa1050900:intron 40.0%
TACAAAGACAGGGACCAATT+TGG + chr7_2:17089031-17089050 Msa1050900:intron 40.0%
TTGGGAGTAAACCACCAAAT+TGG - chr7_2:17089048-17089067 None:intergenic 40.0%
! GCACTGTTCTTTTCCCTTAA+AGG - chr7_2:17089088-17089107 None:intergenic 40.0%
ACAGATCATCTGAACAAACG+AGG + chr7_2:17089351-17089370 Msa1050900:five_prime_UTR 40.0%
CAGATCATCTGAACAAACGA+GGG + chr7_2:17089352-17089371 Msa1050900:five_prime_UTR 40.0%
ACTTTCGAAAACAAGGAGAG+AGG - chr7_2:17089424-17089443 None:intergenic 40.0%
GAGTCTTAGACTGAAAGAAG+GGG + chr7_2:17089540-17089559 Msa1050900:five_prime_UTR 40.0%
TATAGGAACTGCGTTTGTGT+CGG + chr7_2:17089651-17089670 Msa1050900:CDS 40.0%
! CAACAGCCGAAATGTTTTGT+AGG - chr7_2:17089683-17089702 None:intergenic 40.0%
! GCTAATCTAGAACTTTGCTG+AGG + chr7_2:17089739-17089758 Msa1050900:intron 40.0%
CGTCATCCGAAGTTATTGAT+TGG - chr7_2:17089939-17089958 None:intergenic 40.0%
CATAGATGAGAGAGAACGAA+GGG - chr7_2:17090083-17090102 None:intergenic 40.0%
ACATAGATGAGAGAGAACGA+AGG - chr7_2:17090084-17090103 None:intergenic 40.0%
TTGAACACTCCCGAGTATAA+AGG + chr7_2:17090255-17090274 Msa1050900:intron 40.0%
TTGAACACTCCCGAGTATAA+AGG + chr7_2:17090255-17090274 Msa1050900:intron 40.0%
ACTTGTTTCAAGACGTGAGA+AGG + chr7_2:17090921-17090940 Msa1050900:CDS 40.0%
CTTGTTTCAAGACGTGAGAA+GGG + chr7_2:17090922-17090941 Msa1050900:CDS 40.0%
ATGAAGAGTCAGAACCTCTA+AGG + chr7_2:17090959-17090978 Msa1050900:CDS 40.0%
TGAAGAGTCAGAACCTCTAA+GGG + chr7_2:17090960-17090979 Msa1050900:CDS 40.0%
AAAGAATCCACCGGAAAAGA+TGG + chr7_2:17091030-17091049 Msa1050900:CDS 40.0%
AAGAATCCACCGGAAAAGAT+GGG + chr7_2:17091031-17091050 Msa1050900:CDS 40.0%
! TTCCTTTGACCCATCTTTTC+CGG - chr7_2:17091043-17091062 None:intergenic 40.0%
TCGTCAGCAAAACTTACAAC+TGG + chr7_2:17091090-17091109 Msa1050900:CDS 40.0%
TGTGTATGCATCATCAGAAG+AGG + chr7_2:17091122-17091141 Msa1050900:CDS 40.0%
TGTTGTCCAACATGTCTTGA+AGG + chr7_2:17091150-17091169 Msa1050900:CDS 40.0%
TGAGAACCTATGCAGTGTTT+GGG - chr7_2:17091386-17091405 None:intergenic 40.0%
ATGAGAACCTATGCAGTGTT+TGG - chr7_2:17091387-17091406 None:intergenic 40.0%
ACGGTACTATTGCATTGCAA+TGG + chr7_2:17091453-17091472 Msa1050900:intron 40.0%
GGTCCTTGTTGCAAACAAAA+CGG + chr7_2:17091756-17091775 Msa1050900:intron 40.0%
!!! CATCCGTTTTGTTTGCAACA+AGG - chr7_2:17091762-17091781 None:intergenic 40.0%
CTCTTCAGTGTATTCTGCAA+GGG - chr7_2:17091854-17091873 None:intergenic 40.0%
TCTCTTCAGTGTATTCTGCA+AGG - chr7_2:17091855-17091874 None:intergenic 40.0%
ATCTTGGTTGCATATACGAG+TGG + chr7_2:17091911-17091930 Msa1050900:CDS 40.0%
ATAGAGCACACAAAAGTCAG+TGG + chr7_2:17092039-17092058 Msa1050900:intron 40.0%
TAGAGCACACAAAAGTCAGT+GGG + chr7_2:17092040-17092059 Msa1050900:intron 40.0%
TAGCAAACTTACCAAGTCTC+TGG + chr7_2:17092106-17092125 Msa1050900:intron 40.0%
CTTGTTCAACTGGTTGAATC+AGG + chr7_2:17092331-17092350 Msa1050900:intron 40.0%
AGCTAGTTCGCCAATTGATT+TGG + chr7_2:17092358-17092377 Msa1050900:intron 40.0%
ACAACCAGGACCAAATCAAT+TGG - chr7_2:17092371-17092390 None:intergenic 40.0%
!! TTGATTTGGTCCTGGTTGTA+TGG + chr7_2:17092372-17092391 Msa1050900:intron 40.0%
! ATCTGGATCTAGTTCAACCA+TGG + chr7_2:17092535-17092554 Msa1050900:intron 40.0%
CACTAGTTCAATCTTTGGTC+AGG + chr7_2:17092598-17092617 Msa1050900:intron 40.0%
! CTCTTCCCAAAGCACTTTAT+TGG - chr7_2:17092646-17092665 None:intergenic 40.0%
!! CAATAAAGTGCTTTGGGAAG+AGG + chr7_2:17092644-17092663 Msa1050900:intron 40.0%
GTTAATAGCACTCCTCTACA+TGG + chr7_2:17092681-17092700 Msa1050900:intron 40.0%
TGATGAAAAGGGGAAATGAC+TGG - chr7_2:17092775-17092794 None:intergenic 40.0%
TTTGTGGTAAGCATGTTCTG+AGG + chr7_2:17093055-17093074 Msa1050900:intron 40.0%
! TCTTTCTTCCTTGCCAGTTT+TGG - chr7_2:17093420-17093439 None:intergenic 40.0%
! AGAGTTTGCCTTGTAATGGA+AGG + chr7_2:17093481-17093500 Msa1050900:three_prime_UTR 40.0%
CTTCTCGTTCGTAGAAGAAG+GGG - chr7_2:17088803-17088822 None:intergenic 45.0%
CCTTCTCGTTCGTAGAAGAA+GGG - chr7_2:17088804-17088823 None:intergenic 45.0%
ACCTTCTCGTTCGTAGAAGA+AGG - chr7_2:17088805-17088824 None:intergenic 45.0%
AAAGACAGGGACCAATTTGG+TGG + chr7_2:17089034-17089053 Msa1050900:intron 45.0%
TTGCAGGTGATCAAGAGAGT+CGG + chr7_2:17089310-17089329 Msa1050900:intron 45.0%
ATCATCTGAACAAACGAGGG+AGG + chr7_2:17089355-17089374 Msa1050900:five_prime_UTR 45.0%
TCATCTGAACAAACGAGGGA+GGG + chr7_2:17089356-17089375 Msa1050900:five_prime_UTR 45.0%
!! TTGTCATTGGTTCGTGCTGT+TGG + chr7_2:17089445-17089464 Msa1050900:five_prime_UTR 45.0%
!! TGTCATTGGTTCGTGCTGTT+GGG + chr7_2:17089446-17089465 Msa1050900:five_prime_UTR 45.0%
CTTGACCCAATGCAATGCAA+CGG + chr7_2:17089868-17089887 Msa1050900:intron 45.0%
TTGACCCAATGCAATGCAAC+GGG + chr7_2:17089869-17089888 Msa1050900:intron 45.0%
CAAACCCGTTGCATTGCATT+GGG - chr7_2:17089876-17089895 None:intergenic 45.0%
! TCTAAAATCCTTCTGGACCG+TGG + chr7_2:17089999-17090018 Msa1050900:intron 45.0%
ATGAGAGAGAACGAAGGGTA+GGG - chr7_2:17090078-17090097 None:intergenic 45.0%
! GGTGCGTTGATGCATATTGA+AGG - chr7_2:17090546-17090565 None:intergenic 45.0%
ATTCCGTAGAAGGGAAATGC+AGG + chr7_2:17090756-17090775 Msa1050900:CDS 45.0%
AGATATACCGTTCTCCTCCA+AGG + chr7_2:17090848-17090867 Msa1050900:CDS 45.0%
GGGTCTGCATCATAAGGTAA+CGG - chr7_2:17090874-17090893 None:intergenic 45.0%
TACCTTATGATGCAGACCCT+AGG + chr7_2:17090875-17090894 Msa1050900:CDS 45.0%
!! AGAACCTCTAAGGGTTGATG+TGG + chr7_2:17090969-17090988 Msa1050900:CDS 45.0%
ACATCCACATCAACCCTTAG+AGG - chr7_2:17090976-17090995 None:intergenic 45.0%
CCACTCGAACTCAAAGATTC+TGG - chr7_2:17091003-17091022 None:intergenic 45.0%
! CCAGAATCTTTGAGTTCGAG+TGG + chr7_2:17091000-17091019 Msa1050900:CDS 45.0%
! CTTTGAGTTCGAGTGGTAAG+TGG + chr7_2:17091007-17091026 Msa1050900:CDS 45.0%
GGTAAGTGGAAAGAATCCAC+CGG + chr7_2:17091021-17091040 Msa1050900:CDS 45.0%
GTCTTACTGAGGACTTGGAA+CGG - chr7_2:17091068-17091087 None:intergenic 45.0%
CGAAAGTCTTACTGAGGACT+TGG - chr7_2:17091073-17091092 None:intergenic 45.0%
TGCTGACGAAAGTCTTACTG+AGG - chr7_2:17091079-17091098 None:intergenic 45.0%
GTATGCATCATCAGAAGAGG+AGG + chr7_2:17091125-17091144 Msa1050900:CDS 45.0%
ATTAGTGCCAGTATTGCGGT+CGG + chr7_2:17091351-17091370 Msa1050900:intron 45.0%
AGAACCTATGCAGTGTTTGG+GGG - chr7_2:17091384-17091403 None:intergenic 45.0%
GAGAACCTATGCAGTGTTTG+GGG - chr7_2:17091385-17091404 None:intergenic 45.0%
TGCAAAACACAGAAGGTGGT+GGG - chr7_2:17091616-17091635 None:intergenic 45.0%
GATGTCCGCTAATAGATGGA+GGG - chr7_2:17091647-17091666 None:intergenic 45.0%
TGACCCAAAAACTGGGATAC+CGG - chr7_2:17091676-17091695 None:intergenic 45.0%
TGGTTGCATATACGAGTGGA+TGG + chr7_2:17091915-17091934 Msa1050900:CDS 45.0%
TGCACTCTTAACCAGAGACT+TGG - chr7_2:17092120-17092139 None:intergenic 45.0%
! ACTGTTGGGACTGGTAGAAT+TGG - chr7_2:17092197-17092216 None:intergenic 45.0%
!! TTCGCCAATTGATTTGGTCC+TGG + chr7_2:17092364-17092383 Msa1050900:intron 45.0%
AACGAATCGTGGTTCAACTC+TGG - chr7_2:17092421-17092440 None:intergenic 45.0%
AGAGTTGAACCACGATTCGT+TGG + chr7_2:17092420-17092439 Msa1050900:intron 45.0%
TTGAACCACGATTCGTTGGT+CGG + chr7_2:17092424-17092443 Msa1050900:intron 45.0%
! CTTTTCTCCTCTGCCAAAAC+TGG + chr7_2:17093404-17093423 Msa1050900:three_prime_UTR 45.0%
CCCTTCTTCTACGAACGAGA+AGG + chr7_2:17088801-17088820 Msa1050900:intron 50.0%
!! GTCATTGGTTCGTGCTGTTG+GGG + chr7_2:17089447-17089466 Msa1050900:five_prime_UTR 50.0%
!! TCATTGGTTCGTGCTGTTGG+GGG + chr7_2:17089448-17089467 Msa1050900:five_prime_UTR 50.0%
CCAAACCCGTTGCATTGCAT+TGG - chr7_2:17089877-17089896 None:intergenic 50.0%
! CCAATGCAATGCAACGGGTT+TGG + chr7_2:17089874-17089893 Msa1050900:intron 50.0%
CAGCAATCCACGCATTCATG+CGG + chr7_2:17089909-17089928 Msa1050900:intron 50.0%
ACGAAGGGTAGGGTTGCATT+AGG - chr7_2:17090068-17090087 None:intergenic 50.0%
GATGAGAGAGAACGAAGGGT+AGG - chr7_2:17090079-17090098 None:intergenic 50.0%
GCGCTTCCTTCATCTGTACA+GGG + chr7_2:17090778-17090797 Msa1050900:CDS 50.0%
CGCTTCCTTCATCTGTACAG+GGG + chr7_2:17090779-17090798 Msa1050900:CDS 50.0%
GCTTCCTTCATCTGTACAGG+GGG + chr7_2:17090780-17090799 Msa1050900:CDS 50.0%
! TCATAAGGTAACGGCCTTGG+AGG - chr7_2:17090865-17090884 None:intergenic 50.0%
! GCATCATAAGGTAACGGCCT+TGG - chr7_2:17090868-17090887 None:intergenic 50.0%
TGCCTAGGGTCTGCATCATA+AGG - chr7_2:17090880-17090899 None:intergenic 50.0%
CATTTCCGCTCACAGCATGA+CGG + chr7_2:17090898-17090917 Msa1050900:CDS 50.0%
! CTTTGACCCATCTTTTCCGG+TGG - chr7_2:17091040-17091059 None:intergenic 50.0%
CACCGGAAAAGATGGGTCAA+AGG + chr7_2:17091038-17091057 Msa1050900:CDS 50.0%
GAACCTATGCAGTGTTTGGG+GGG - chr7_2:17091383-17091402 None:intergenic 50.0%
CTGTCTGTAAACATGGAGGC+TGG - chr7_2:17091419-17091438 None:intergenic 50.0%
GTGCAAAACACAGAAGGTGG+TGG - chr7_2:17091617-17091636 None:intergenic 50.0%
CTAATAGATGGAGGGAGAGG+CGG - chr7_2:17091639-17091658 None:intergenic 50.0%
CCTCTCCCTCCATCTATTAG+CGG + chr7_2:17091639-17091658 Msa1050900:intron 50.0%
GGATGTCCGCTAATAGATGG+AGG - chr7_2:17091648-17091667 None:intergenic 50.0%
GCAGGATGTCCGCTAATAGA+TGG - chr7_2:17091651-17091670 None:intergenic 50.0%
! CACCCGGTATCCCAGTTTTT+GGG + chr7_2:17091670-17091689 Msa1050900:intron 50.0%
GACCCAAAAACTGGGATACC+GGG - chr7_2:17091675-17091694 None:intergenic 50.0%
AGTGACAGCTGTCCTGTTTG+TGG + chr7_2:17091943-17091962 Msa1050900:CDS 50.0%
GTGACAGCTGTCCTGTTTGT+GGG + chr7_2:17091944-17091963 Msa1050900:CDS 50.0%
!! AAGTCAGTGGGCTGAGAAAC+AGG + chr7_2:17092052-17092071 Msa1050900:intron 50.0%
CGTCAGCACAGAACACTGTT+GGG - chr7_2:17092211-17092230 None:intergenic 50.0%
!! ACGGGACTAGCTTGTTCAAC+TGG + chr7_2:17092321-17092340 Msa1050900:intron 50.0%
GTATGGCAGTCTGGTCTAAG+AGG + chr7_2:17092389-17092408 Msa1050900:intron 50.0%
!! TTCCTTGCCAGTTTTGGCAG+AGG - chr7_2:17093414-17093433 None:intergenic 50.0%
!! AGGGGTTTTGGCGTTTTCGG+TGG - chr7_2:17088095-17088114 None:intergenic 55.0%
!! CGAGGGAGGGTACTAGTTTG+CGG + chr7_2:17089369-17089388 Msa1050900:five_prime_UTR 55.0%
TGGTTGACCGCATGAATGCG+TGG - chr7_2:17089919-17089938 None:intergenic 55.0%
ATCAGTGACCACGGTCCAGA+AGG - chr7_2:17090010-17090029 None:intergenic 55.0%
AGCCAGCACATCAGTGACCA+CGG - chr7_2:17090019-17090038 None:intergenic 55.0%
!! CACTGATGTGCTGGCTGTGT+CGG + chr7_2:17090023-17090042 Msa1050900:intron 55.0%
CTGTGTCGGATTGTGACAGC+AGG + chr7_2:17090037-17090056 Msa1050900:intron 55.0%
GCGCCTGCATTTCCCTTCTA+CGG - chr7_2:17090762-17090781 None:intergenic 55.0%
GGCGCTTCCTTCATCTGTAC+AGG + chr7_2:17090777-17090796 Msa1050900:CDS 55.0%
GTAACGGCCTTGGAGGAGAA+CGG - chr7_2:17090858-17090877 None:intergenic 55.0%
GCTGTGAGCGGAAATGCCTA+GGG - chr7_2:17090894-17090913 None:intergenic 55.0%
TGCTGTGAGCGGAAATGCCT+AGG - chr7_2:17090895-17090914 None:intergenic 55.0%
CAAGTCCGTCATGCTGTGAG+CGG - chr7_2:17090906-17090925 None:intergenic 55.0%
!! AAGGTGGTGGGTTCGCAACA+GGG - chr7_2:17091604-17091623 None:intergenic 55.0%
GCGGTGCAAAACACAGAAGG+TGG - chr7_2:17091620-17091639 None:intergenic 55.0%
GAGGCGGTGCAAAACACAGA+AGG - chr7_2:17091623-17091642 None:intergenic 55.0%
CCGCTAATAGATGGAGGGAG+AGG - chr7_2:17091642-17091661 None:intergenic 55.0%
! ATTAGCGGACATCCTGCACC+CGG + chr7_2:17091654-17091673 Msa1050900:intron 55.0%
AAAACTGGGATACCGGGTGC+AGG - chr7_2:17091669-17091688 None:intergenic 55.0%
! GCACCCGGTATCCCAGTTTT+TGG + chr7_2:17091669-17091688 Msa1050900:intron 55.0%
!!! TCCCAGTTTTTGGGTCAGCG+AGG + chr7_2:17091679-17091698 Msa1050900:intron 55.0%
GCCTCGCTGACCCAAAAACT+GGG - chr7_2:17091683-17091702 None:intergenic 55.0%
AGCCTCGCTGACCCAAAAAC+TGG - chr7_2:17091684-17091703 None:intergenic 55.0%
CAGCTGTCCTGTTTGTGGGA+AGG + chr7_2:17091948-17091967 Msa1050900:CDS 55.0%
GCACAGAACACTGTTGGGAC+TGG - chr7_2:17092206-17092225 None:intergenic 55.0%
GCGTCAGCACAGAACACTGT+TGG - chr7_2:17092212-17092231 None:intergenic 55.0%
GTCCTGGTTGTATGGCAGTC+TGG + chr7_2:17092380-17092399 Msa1050900:intron 55.0%
GACCAGACTGCCATACAACC+AGG - chr7_2:17092385-17092404 None:intergenic 55.0%
ACCACGATTCGTTGGTCGGT+TGG + chr7_2:17092428-17092447 Msa1050900:intron 55.0%
ACCAACCGACCAACGAATCG+TGG - chr7_2:17092432-17092451 None:intergenic 55.0%
CTCCTCTGCCAAAACTGGCA+AGG + chr7_2:17093409-17093428 Msa1050900:three_prime_UTR 55.0%
!! GGGAGGGTACTAGTTTGCGG+AGG + chr7_2:17089372-17089391 Msa1050900:five_prime_UTR 60.0%
GACCGTGGTCACTGATGTGC+TGG + chr7_2:17090014-17090033 Msa1050900:intron 60.0%
GCTGCCCCCTGTACAGATGA+AGG - chr7_2:17090787-17090806 None:intergenic 60.0%
AGTGCCAGTATTGCGGTCGG+TGG + chr7_2:17091354-17091373 Msa1050900:intron 60.0%
GTGCCAGTATTGCGGTCGGT+GGG + chr7_2:17091355-17091374 Msa1050900:intron 60.0%
GCACCCCCCAAACACTGCAT+AGG + chr7_2:17091377-17091396 Msa1050900:intron 60.0%
!! TGGTGGGTTCGCAACAGGGA+AGG - chr7_2:17091600-17091619 None:intergenic 60.0%
!! GAAGGTGGTGGGTTCGCAAC+AGG - chr7_2:17091605-17091624 None:intergenic 60.0%
TTTGGGTCAGCGAGGCTCGT+TGG + chr7_2:17091687-17091706 Msa1050900:intron 60.0%
GTGCCCACCGACCGCAATAC+TGG - chr7_2:17091361-17091380 None:intergenic 65.0%
GGGTCAGCGAGGCTCGTTGG+AGG + chr7_2:17091690-17091709 Msa1050900:intron 70.0%
Chromosome Type Strat End Strand Name
chr7_2 gene 17088026 17093517 17088026 ID=Msa1050900;Name=Msa1050900
chr7_2 mRNA 17088026 17093517 17088026 ID=Msa1050900-mRNA-1;Parent=Msa1050900;Name=Msa1050900-mRNA-1;_AED=0.03;_eAED=0.03;_QI=476|1|1|1|0.5|0.4|5|298|227
chr7_2 exon 17088026 17088235 17088026 ID=Msa1050900-mRNA-1:exon:3825;Parent=Msa1050900-mRNA-1
chr7_2 exon 17089316 17089701 17089316 ID=Msa1050900-mRNA-1:exon:3826;Parent=Msa1050900-mRNA-1
chr7_2 exon 17090745 17091171 17090745 ID=Msa1050900-mRNA-1:exon:3827;Parent=Msa1050900-mRNA-1
chr7_2 exon 17091860 17091969 17091860 ID=Msa1050900-mRNA-1:exon:3828;Parent=Msa1050900-mRNA-1
chr7_2 exon 17093193 17093517 17093193 ID=Msa1050900-mRNA-1:exon:3829;Parent=Msa1050900-mRNA-1
chr7_2 five_prime_UTR 17088026 17088235 17088026 ID=Msa1050900-mRNA-1:five_prime_utr;Parent=Msa1050900-mRNA-1
chr7_2 five_prime_UTR 17089316 17089581 17089316 ID=Msa1050900-mRNA-1:five_prime_utr;Parent=Msa1050900-mRNA-1
chr7_2 CDS 17089582 17089701 17089582 ID=Msa1050900-mRNA-1:cds;Parent=Msa1050900-mRNA-1
chr7_2 CDS 17090745 17091171 17090745 ID=Msa1050900-mRNA-1:cds;Parent=Msa1050900-mRNA-1
chr7_2 CDS 17091860 17091969 17091860 ID=Msa1050900-mRNA-1:cds;Parent=Msa1050900-mRNA-1
chr7_2 CDS 17093193 17093219 17093193 ID=Msa1050900-mRNA-1:cds;Parent=Msa1050900-mRNA-1
chr7_2 three_prime_UTR 17093220 17093517 17093220 ID=Msa1050900-mRNA-1:three_prime_utr;Parent=Msa1050900-mRNA-1
Gene Sequence

>Msa1050900

ATGGGTTCGATTTGTTCTTGTTTAAGTGTTGATGATTTTGAAGATTACATGAATCCACATAGTCATGTGTATAGGAACTGCGTTTGTGTCGGTTGCTTCCTACAAAACATTTCGGCTGTTTATTCATCAATATTCCGTAGAAGGGAAATGCAGGCGCTTCCTTCATCTGTACAGGGGGCAGCATCTATGACTAATACAGCATCACTTGATAATTCTCTAGCTGAGATATACCGTTCTCCTCCAAGGCCGTTACCTTATGATGCAGACCCTAGGCATTTCCGCTCACAGCATGACGGACTTGTTTCAAGACGTGAGAAGGGTTCCAGTCATTTGAATGAAGAGTCAGAACCTCTAAGGGTTGATGTGGATGTAGATCCAGAATCTTTGAGTTCGAGTGGTAAGTGGAAAGAATCCACCGGAAAAGATGGGTCAAAGGAATACCGTTCCAAGTCCTCAGTAAGACTTTCGTCAGCAAAACTTACAACTGGAGCTGCACTTGTGTATGCATCATCAGAAGAGGAGGATTGTTGTCCAACATGTCTTGAAGAATACACTGAAGAGAATCCGAAGATAGTGACAAAATGTAATCACCATTATCATCTTGGTTGCATATACGAGTGGATGGAGAGAAGTGACAGCTGTCCTGTTTGTGGGAAGGTGATGTTATTCGATGAATCGCCATAA
Protein sequence

>Msa1050900

MGSICSCLSVDDFEDYMNPHSHVYRNCVCVGCFLQNISAVYSSIFRRREMQALPSSVQGAASMTNTASLDNSLAEIYRSPPRPLPYDADPRHFRSQHDGLVSRREKGSSHLNEESEPLRVDVDVDPESLSSSGKWKESTGKDGSKEYRSKSSVRLSSAKLTTGAALVYASSEEEDCCPTCLEEYTEENPKIVTKCNHHYHLGCIYEWMERSDSCPVCGKVMLFDESP*