AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0034590


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0034590 MtrunA17_Chr1g0196961 95.029 342 6 2 1 342 1 331 0.0 665
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0034590 AT2G38680.1 67.987 303 93 4 42 341 40 341 1.56e-146 417

Find 94 sgRNAs with CRISPR-Local

Find 249 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGAAATGGAGGATATCAAAT+TGG 0.201664 1_1:-62638978 Msa0034590:CDS
ATGCCACATTAACAAAGTTT+TGG 0.238917 1_1:-62638376 Msa0034590:CDS
CGCTGGTCCTCAAAAGCTTC+AGG 0.241520 1_1:-62638891 Msa0034590:intron
CTTCATAAGGAGAAATTAAT+AGG 0.248523 1_1:+62636195 None:intergenic
TCCAATATTAACAGGTTCTA+AGG 0.257059 1_1:-62637449 Msa0034590:intron
GCTAAGAGTATATGGTTAAC+TGG 0.261941 1_1:+62636254 None:intergenic
AGAACCAATGTTCTCCTTCT+TGG 0.265210 1_1:-62636813 Msa0034590:CDS
TCAGCCTCTGCATGAATTAC+AGG 0.322297 1_1:+62639318 None:intergenic
TTCATATAACTGCTGCCTTT+TGG 0.338973 1_1:+62638195 None:intergenic
ATGATACTGCTAAGAGTATA+TGG 0.344765 1_1:+62636246 None:intergenic
TCATTTGCTTAAAATATTAC+CGG 0.362053 1_1:+62635903 None:intergenic
TCACCGAATCGTTCGTGAAC+AGG 0.376885 1_1:+62636876 None:intergenic
AGTTTGTTGTGGAGCAAAAC+AGG 0.387622 1_1:+62638929 None:intergenic
AAATGAGCATGCTCTTGATA+TGG 0.389669 1_1:-62636904 Msa0034590:CDS
ACTTGTTAGCATTCTTCATA+AGG 0.393716 1_1:+62636182 None:intergenic
CAATGAGACGTGTTTATCAT+AGG 0.396301 1_1:+62639377 None:intergenic
TTGTGGAAAACATTTGGAAA+TGG 0.410077 1_1:-62638993 Msa0034590:CDS
GAAATGGAGGATATCAAATT+GGG 0.419430 1_1:-62638977 Msa0034590:CDS
CCTGTATTAATATTCTCTGC+AGG 0.422018 1_1:-62637599 Msa0034590:CDS
CCCTTGGGCTGGAAGAGAAA+AGG 0.437854 1_1:-62638144 Msa0034590:CDS
TTTCCCCTCCTGGATATGGC+TGG 0.439476 1_1:-62636133 Msa0034590:three_prime_UTR
CCTGCAGAGAATATTAATAC+AGG 0.451901 1_1:+62637599 None:intergenic
ACGCATGCTCTTCTTATTGA+AGG 0.454576 1_1:-62637875 Msa0034590:CDS
TGGTGATCACACTGGAGACT+TGG 0.455229 1_1:-62636793 Msa0034590:CDS
GGAGAAATTAATAGGAACCT+TGG 0.457417 1_1:+62636203 None:intergenic
GAACGATTCGGTGATATTGA+TGG 0.458869 1_1:-62636867 Msa0034590:CDS
GAGAAATTAATAGGAACCTT+GGG 0.466094 1_1:+62636204 None:intergenic
AGCTTCATTGTAAACATACA+TGG 0.466970 1_1:+62636068 None:intergenic
CTGGATTATCCTGCTGCAAA+AGG 0.467977 1_1:+62638227 None:intergenic
AACCCAAAACTTTGTTAATG+TGG 0.470399 1_1:+62638373 None:intergenic
ATGTGAAGATAGTATCCAAC+AGG 0.474848 1_1:-62637401 Msa0034590:CDS
GCGCCTGTTCACGAACGATT+CGG 0.479515 1_1:-62636879 Msa0034590:CDS
CTTGCTGCAATTCGTTCCGC+TGG 0.481743 1_1:-62638908 Msa0034590:CDS
AGTTGGTGGTGACGATGGAT+TGG 0.487760 1_1:+62639163 None:intergenic
CTTGAGCAAGTCATTGTCAT+CGG 0.490371 1_1:+62636839 None:intergenic
AGACGTGTTTATCATAGGTT+CGG 0.491427 1_1:+62639382 None:intergenic
GCTTACATAGTTAAGTTAAG+TGG 0.491803 1_1:+62639236 None:intergenic
GCTAATCGCCAGCCATATCC+AGG 0.493885 1_1:+62636125 None:intergenic
TGGTGACGATGGATTGGAGT+TGG 0.494711 1_1:+62639169 None:intergenic
AGCAAGTCATTGTCATCGGT+TGG 0.500842 1_1:+62636843 None:intergenic
TACGATACTCGAATTTCTGT+GGG 0.505866 1_1:-62636750 Msa0034590:CDS
TGGAAAACATTTGGAAATGG+AGG 0.511488 1_1:-62638990 Msa0034590:CDS
CACCTTTAAAAGATACAAGT+TGG 0.511666 1_1:+62637361 None:intergenic
ATCCAGAATATGATGCCAAA+AGG 0.511735 1_1:-62638210 Msa0034590:CDS
CAGGTCACAAGTAAAATGAA+TGG 0.513317 1_1:+62639337 None:intergenic
ATTGTTAAATACCATCCTGT+TGG 0.514081 1_1:+62637386 None:intergenic
ATATGAACATTACCATCCAT+TGG 0.515894 1_1:-62638179 Msa0034590:CDS
ATTAGCAGTTATGTTATGCT+AGG 0.518158 1_1:-62636108 Msa0034590:three_prime_UTR
CACTTTGATAACTTCCCACA+TGG 0.519877 1_1:+62636313 None:intergenic
CTGTATTAATATTCTCTGCA+GGG 0.521088 1_1:-62637598 Msa0034590:CDS
CTCCTTCTTGGTGATCACAC+TGG 0.541831 1_1:-62636801 Msa0034590:CDS
GGTGATCACACTGGAGACTT+GGG 0.548044 1_1:-62636792 Msa0034590:CDS
GAATTGCAGCAAGTTTGTTG+TGG 0.553040 1_1:+62638918 None:intergenic
GTCTCTCATATGTGCTCAAG+TGG 0.559631 1_1:-62636290 Msa0034590:CDS
GCTACACTTCTTCAACATCA+AGG 0.560582 1_1:-62639119 Msa0034590:intron
AAAGTGACGTGGGAGAAAGT+TGG 0.564371 1_1:+62639146 None:intergenic
GAGAAAGTTGGTGGTGACGA+TGG 0.566081 1_1:+62639158 None:intergenic
CTAAGAGTATATGGTTAACT+GGG 0.566861 1_1:+62636255 None:intergenic
TAGGAGAAAATTCCAATGGA+TGG 0.567633 1_1:+62638167 None:intergenic
TGATGTTGAAGAAGTGTAGC+GGG 0.570667 1_1:+62639122 None:intergenic
GGAGACTTGGGAATGTCTGA+TGG 0.575829 1_1:-62636780 Msa0034590:CDS
TTACGATACTCGAATTTCTG+TGG 0.585256 1_1:-62636751 Msa0034590:CDS
TGACGATGGATTGGAGTTGG+AGG 0.602766 1_1:+62639172 None:intergenic
GGGTTCAGAATTGACGCTGG+TGG 0.610837 1_1:-62638957 Msa0034590:CDS
AAAGGAAACTCATGGTAGAG+TGG 0.614036 1_1:-62638126 Msa0034590:intron
TTCTCTTCCAGCCCAAGGGT+AGG 0.615641 1_1:+62638148 None:intergenic
CTCCAGTGTGATCACCAAGA+AGG 0.618740 1_1:+62636799 None:intergenic
CATGCTCTTCTTATTGAAGG+AGG 0.621492 1_1:-62637872 Msa0034590:CDS
GGTTCAGAATTGACGCTGGT+GGG 0.621982 1_1:-62638956 Msa0034590:CDS
AGGGTAGGAGAAAATTCCAA+TGG 0.624608 1_1:+62638163 None:intergenic
GGAAGAGAAAAGGAAACTCA+TGG 0.628987 1_1:-62638134 Msa0034590:CDS
GTGACGTGGGAGAAAGTTGG+TGG 0.633859 1_1:+62639149 None:intergenic
ATCGCCAGCCATATCCAGGA+GGG 0.634611 1_1:+62636129 None:intergenic
GCTTGCTGATATCATTGAAG+AGG 0.634896 1_1:-62637576 Msa0034590:intron
AACAGGATGGTATTTAACAA+TGG 0.634907 1_1:-62637384 Msa0034590:CDS
GAGTCATTTCTAGGCAGTCA+TGG 0.643405 1_1:-62638250 Msa0034590:intron
TGCAGAATGATGCGCCCATG+TGG 0.644000 1_1:-62636328 Msa0034590:intron
GGCGATAACTCATTTGAGTG+TGG 0.645636 1_1:+62639193 None:intergenic
GCTTCATTGTAAACATACAT+GGG 0.648678 1_1:+62636069 None:intergenic
ACTTTGATAACTTCCCACAT+GGG 0.653578 1_1:+62636314 None:intergenic
GAAGATAGTATCCAACAGGA+TGG 0.654156 1_1:-62637397 Msa0034590:CDS
ATCACCAAGAAGGAGAACAT+TGG 0.655582 1_1:+62636809 None:intergenic
TCTCTCATATGTGCTCAAGT+GGG 0.662286 1_1:-62636289 Msa0034590:CDS
GTGTAGCGGGAAAAGTGACG+TGG 0.663698 1_1:+62639135 None:intergenic
ATTGGGTTCAGAATTGACGC+TGG 0.663874 1_1:-62638960 Msa0034590:CDS
GCAGAATGATGCGCCCATGT+GGG 0.682785 1_1:-62636327 Msa0034590:intron
TCGCCAGCCATATCCAGGAG+GGG 0.683257 1_1:+62636130 None:intergenic
TTGATGTTGAAGAAGTGTAG+CGG 0.688175 1_1:+62639121 None:intergenic
TAAGTGAGTTCTCAACGTTG+TGG 0.688216 1_1:+62636584 None:intergenic
TGTAGCGGGAAAAGTGACGT+GGG 0.689625 1_1:+62639136 None:intergenic
TGCGACAGTGACATAGACAC+CGG 0.704097 1_1:-62635922 Msa0034590:three_prime_UTR
GTGACCTGTAATTCATGCAG+AGG 0.707599 1_1:-62639322 Msa0034590:five_prime_UTR
CATGTGGGAAGTTATCAAAG+TGG 0.709745 1_1:-62636312 Msa0034590:CDS
AATCGCCAGCCATATCCAGG+AGG 0.724907 1_1:+62636128 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATGTAATTTTTTTTCTTTTA+AGG - chr1_1:62636216-62636235 Msa0034590:three_prime_UTR 10.0%
!!! TGTAATTTTTTTTCTTTTAA+GGG - chr1_1:62636217-62636236 Msa0034590:three_prime_UTR 10.0%
!! AAATATAAATCTTAGAATTT+GGG + chr1_1:62636828-62636847 None:intergenic 10.0%
!! AAAATATAAATCTTAGAATT+TGG + chr1_1:62636829-62636848 None:intergenic 10.0%
!!! ATTTATATTTTCTTTTTTGT+AGG - chr1_1:62636838-62636857 Msa0034590:CDS 10.0%
!!! TATTCTGTTTTTTTTTTTTA+TGG - chr1_1:62637209-62637228 Msa0034590:intron 10.0%
!!! ATTCTGTTTTTTTTTTTTAT+GGG - chr1_1:62637210-62637229 Msa0034590:intron 10.0%
!! ATAATAACTAAATTAATGTT+TGG + chr1_1:62638772-62638791 None:intergenic 10.0%
!! AAAAAAATTACATGCAATAA+GGG + chr1_1:62636209-62636228 None:intergenic 15.0%
!! AAAAAAAATTACATGCAATA+AGG + chr1_1:62636210-62636229 None:intergenic 15.0%
!!! TCATCTTAAGTTTTTATATT+CGG + chr1_1:62636706-62636725 None:intergenic 15.0%
!! AAAAATAACAAAATGGAAAA+TGG + chr1_1:62637618-62637637 None:intergenic 15.0%
!! AAAAAATTACATGCAATAAG+GGG + chr1_1:62636208-62636227 None:intergenic 20.0%
!! AACTCAATTATCAATGAAAT+GGG + chr1_1:62636398-62636417 None:intergenic 20.0%
!! AAACTCAATTATCAATGAAA+TGG + chr1_1:62636399-62636418 None:intergenic 20.0%
!! TAATTGCATAACACAAAATT+GGG - chr1_1:62636463-62636482 Msa0034590:intron 20.0%
!! ATATATTTGTCAAAGAAAGA+TGG + chr1_1:62637503-62637522 None:intergenic 20.0%
!!! TGATATGTTCATTTTATATC+AGG - chr1_1:62637535-62637554 Msa0034590:intron 20.0%
!!! TTTCCATTTTGTTATTTTTC+AGG - chr1_1:62637619-62637638 Msa0034590:intron 20.0%
!! TTTCCTGAAAAATAACAAAA+TGG + chr1_1:62637625-62637644 None:intergenic 20.0%
!!! AAGTCTATTTTGTTTTATGT+TGG - chr1_1:62637705-62637724 Msa0034590:intron 20.0%
!! AATACACAATAAATGAAAGT+TGG + chr1_1:62637928-62637947 None:intergenic 20.0%
!!! TATGCAAATATATTTTTCAG+AGG - chr1_1:62637973-62637992 Msa0034590:intron 20.0%
!! TTAATTATTATGTAATTCCC+CGG + chr1_1:62637999-62638018 None:intergenic 20.0%
!! CATAATAATTAATTGCCTTT+AGG - chr1_1:62638007-62638026 Msa0034590:intron 20.0%
!!! ATTTTGTATATGAGAAAACA+AGG + chr1_1:62638204-62638223 None:intergenic 20.0%
!! AACTAAATTAATGTTTGGAA+AGG + chr1_1:62638767-62638786 None:intergenic 20.0%
!! TCATTTGCTTAAAATATTAC+CGG + chr1_1:62639352-62639371 None:intergenic 20.0%
!!! ATTTTGTTTTCCCATTTTTC+TGG - chr1_1:62635988-62636007 Msa0034590:three_prime_UTR 25.0%
! AAAAATTACATGCAATAAGG+GGG + chr1_1:62636207-62636226 None:intergenic 25.0%
!!! ATTTTGTTGTGGAAAACATT+TGG - chr1_1:62636253-62636272 Msa0034590:three_prime_UTR 25.0%
! ACTCAATTATCAATGAAATG+GGG + chr1_1:62636397-62636416 None:intergenic 25.0%
! GTAATTGCATAACACAAAAT+TGG - chr1_1:62636462-62636481 Msa0034590:intron 25.0%
! CAAGCATTATTATATAGTGT+GGG + chr1_1:62636572-62636591 None:intergenic 25.0%
! TCAAGCATTATTATATAGTG+TGG + chr1_1:62636573-62636592 None:intergenic 25.0%
!! GTATCTCAATTTTACAAAAG+TGG + chr1_1:62636616-62636635 None:intergenic 25.0%
! TTGTAAAATTGAGATACTAG+TGG - chr1_1:62636619-62636638 Msa0034590:intron 25.0%
! TGTAAAATTGAGATACTAGT+GGG - chr1_1:62636620-62636639 Msa0034590:intron 25.0%
!!! TTAACAAAGTTTTGGGTTAA+TGG - chr1_1:62636884-62636903 Msa0034590:CDS 25.0%
! AATAGTCATGTAACATACTT+TGG + chr1_1:62636919-62636938 None:intergenic 25.0%
!!! TTAGGATTTGGTGTATTATT+AGG - chr1_1:62637345-62637364 Msa0034590:intron 25.0%
!! TAATGCTAACATAGCTTTTA+GGG - chr1_1:62637436-62637455 Msa0034590:CDS 25.0%
!!! TATTTTGTTTTATGTTGGCA+AGG - chr1_1:62637710-62637729 Msa0034590:intron 25.0%
!! ATTTCTCTTCATTTTCTTGT+CGG - chr1_1:62637742-62637761 Msa0034590:intron 25.0%
!! TACTATCTTCACATTTTTGA+AGG + chr1_1:62637845-62637864 None:intergenic 25.0%
! TTTATTGTGTATTTGTTTGC+TGG - chr1_1:62637935-62637954 Msa0034590:intron 25.0%
! ATTTAATTATGTTTAAGCCC+TGG - chr1_1:62638077-62638096 Msa0034590:intron 25.0%
! GAGAAGTAAAAATTAAGAAC+TGG + chr1_1:62638289-62638308 None:intergenic 25.0%
! CCAGAAAAAAAATTAAGTCA+GGG + chr1_1:62638627-62638646 None:intergenic 25.0%
! ACCAGAAAAAAAATTAAGTC+AGG + chr1_1:62638628-62638647 None:intergenic 25.0%
!!! AGCTTTTGATGTTGTTTTAA+TGG - chr1_1:62638704-62638723 Msa0034590:intron 25.0%
!! CTTCCTATATGATTTGTATA+AGG - chr1_1:62638818-62638837 Msa0034590:intron 25.0%
! TCACCTTATACAAATCATAT+AGG + chr1_1:62638824-62638843 None:intergenic 25.0%
! TATTTCTTATGTTAAGTACC+AGG - chr1_1:62638856-62638875 Msa0034590:intron 25.0%
! GCAAGTTAAAATTAGATACT+CGG + chr1_1:62638893-62638912 None:intergenic 25.0%
! CTTCATAAGGAGAAATTAAT+AGG + chr1_1:62639060-62639079 None:intergenic 25.0%
! TATGCAAAAGCAAAAAATCA+GGG + chr1_1:62639282-62639301 None:intergenic 25.0%
! ATATGCAAAAGCAAAAAATC+AGG + chr1_1:62639283-62639302 None:intergenic 25.0%
GCTTACATAGTTAAGTTAAG+TGG + chr1_1:62636019-62636038 None:intergenic 30.0%
AAAGGTAAAAAAGAGAAGAG+GGG + chr1_1:62636177-62636196 None:intergenic 30.0%
GAAAGGTAAAAAAGAGAAGA+GGG + chr1_1:62636178-62636197 None:intergenic 30.0%
AAAATTACATGCAATAAGGG+GGG + chr1_1:62636206-62636225 None:intergenic 30.0%
! TCGTTTTCTACATTTTGTTG+TGG - chr1_1:62636242-62636261 Msa0034590:three_prime_UTR 30.0%
TTGTGGAAAACATTTGGAAA+TGG - chr1_1:62636259-62636278 Msa0034590:three_prime_UTR 30.0%
GAAATGGAGGATATCAAATT+GGG - chr1_1:62636275-62636294 Msa0034590:exon 30.0%
! GTGTTTAAGAGTCTCATTTT+TGG - chr1_1:62636652-62636671 Msa0034590:intron 30.0%
!! TTTAAGAGTCTCATTTTTGG+AGG - chr1_1:62636655-62636674 Msa0034590:intron 30.0%
!! TTAAGAGTCTCATTTTTGGA+GGG - chr1_1:62636656-62636675 Msa0034590:intron 30.0%
!! TCATTTTTGGAGGGTTTTTT+TGG - chr1_1:62636665-62636684 Msa0034590:intron 30.0%
!! CATTTTTGGAGGGTTTTTTT+GGG - chr1_1:62636666-62636685 Msa0034590:intron 30.0%
! ACCTTACAAATCTGTTTTGT+AGG - chr1_1:62636788-62636807 Msa0034590:CDS 30.0%
TCCTACAAAACAGATTTGTA+AGG + chr1_1:62636792-62636811 None:intergenic 30.0%
! ATGCCACATTAACAAAGTTT+TGG - chr1_1:62636876-62636895 Msa0034590:CDS 30.0%
! TGCCACATTAACAAAGTTTT+GGG - chr1_1:62636877-62636896 Msa0034590:CDS 30.0%
AACCCAAAACTTTGTTAATG+TGG + chr1_1:62636882-62636901 None:intergenic 30.0%
! TCCTAATTTTTGACGTGTAA+GGG + chr1_1:62636961-62636980 None:intergenic 30.0%
! TTCCTAATTTTTGACGTGTA+AGG + chr1_1:62636962-62636981 None:intergenic 30.0%
TATCTAATCGAGTCATTTCT+AGG - chr1_1:62636993-62637012 Msa0034590:intron 30.0%
ATATGAACATTACCATCCAT+TGG - chr1_1:62637073-62637092 Msa0034590:intron 30.0%
TAACTAGTAAGTAAACTCTG+GGG + chr1_1:62637255-62637274 None:intergenic 30.0%
GTAACTAGTAAGTAAACTCT+GGG + chr1_1:62637256-62637275 None:intergenic 30.0%
TGTAACTAGTAAGTAAACTC+TGG + chr1_1:62637257-62637276 None:intergenic 30.0%
AATCTTTGATGCTGTAACTT+AGG - chr1_1:62637327-62637346 Msa0034590:intron 30.0%
!! GATTTGGTGTATTATTAGGT+GGG - chr1_1:62637349-62637368 Msa0034590:intron 30.0%
!! ATTTGGTGTATTATTAGGTG+GGG - chr1_1:62637350-62637369 Msa0034590:intron 30.0%
! CTAATGCTAACATAGCTTTT+AGG - chr1_1:62637435-62637454 Msa0034590:CDS 30.0%
! TTCCGAGCTTTTTGAATTTT+TGG - chr1_1:62637466-62637485 Msa0034590:intron 30.0%
CTCCAAAAATTCAAAAAGCT+CGG + chr1_1:62637471-62637490 None:intergenic 30.0%
CTGTATTAATATTCTCTGCA+GGG - chr1_1:62637654-62637673 Msa0034590:intron 30.0%
!!! TCGCTTTTTCCAATATTAAC+AGG - chr1_1:62637795-62637814 Msa0034590:CDS 30.0%
TCCAATATTAACAGGTTCTA+AGG - chr1_1:62637803-62637822 Msa0034590:CDS 30.0%
ATTGTTAAATACCATCCTGT+TGG + chr1_1:62637869-62637888 None:intergenic 30.0%
AACAGGATGGTATTTAACAA+TGG - chr1_1:62637868-62637887 Msa0034590:CDS 30.0%
! CACCTTTAAAAGATACAAGT+TGG + chr1_1:62637894-62637913 None:intergenic 30.0%
!! CAAATATATTTTTCAGAGGC+CGG - chr1_1:62637977-62637996 Msa0034590:intron 30.0%
!! AAATATATTTTTCAGAGGCC+GGG - chr1_1:62637978-62637997 Msa0034590:intron 30.0%
!! TACTTCTCAATTTTGATCAC+AGG - chr1_1:62638301-62638320 Msa0034590:intron 30.0%
GAGCTCAATTAATGTCTATA+AGG - chr1_1:62638580-62638599 Msa0034590:intron 30.0%
!!! CCCTGACTTAATTTTTTTTC+TGG - chr1_1:62638624-62638643 Msa0034590:intron 30.0%
!! TTAATGGTAAGTTGATTAGC+TGG - chr1_1:62638720-62638739 Msa0034590:intron 30.0%
! CTAAGAGTATATGGTTAACT+GGG + chr1_1:62639000-62639019 None:intergenic 30.0%
! ATGATACTGCTAAGAGTATA+TGG + chr1_1:62639009-62639028 None:intergenic 30.0%
GAGAAATTAATAGGAACCTT+GGG + chr1_1:62639051-62639070 None:intergenic 30.0%
! ACTTGTTAGCATTCTTCATA+AGG + chr1_1:62639073-62639092 None:intergenic 30.0%
ATTAGCAGTTATGTTATGCT+AGG - chr1_1:62639144-62639163 Msa0034590:CDS 30.0%
GCTTCATTGTAAACATACAT+GGG + chr1_1:62639186-62639205 None:intergenic 30.0%
AGCTTCATTGTAAACATACA+TGG + chr1_1:62639187-62639206 None:intergenic 30.0%
CAATGAGACGTGTTTATCAT+AGG + chr1_1:62635878-62635897 None:intergenic 35.0%
CAGGTCACAAGTAAAATGAA+TGG + chr1_1:62635918-62635937 None:intergenic 35.0%
!! AGTGGTGTTACCAGAAAAAT+GGG + chr1_1:62636001-62636020 None:intergenic 35.0%
!! AAGTGGTGTTACCAGAAAAA+TGG + chr1_1:62636002-62636021 None:intergenic 35.0%
! TTGATGTTGAAGAAGTGTAG+CGG + chr1_1:62636134-62636153 None:intergenic 35.0%
AAGGTAAAAAAGAGAAGAGG+GGG + chr1_1:62636176-62636195 None:intergenic 35.0%
GGAAAGGTAAAAAAGAGAAG+AGG + chr1_1:62636179-62636198 None:intergenic 35.0%
TGGAAAACATTTGGAAATGG+AGG - chr1_1:62636262-62636281 Msa0034590:three_prime_UTR 35.0%
GGAAATGGAGGATATCAAAT+TGG - chr1_1:62636274-62636293 Msa0034590:exon 35.0%
! GAAAAAACCTGAAGCTTTTG+AGG + chr1_1:62636371-62636390 None:intergenic 35.0%
TCCCTTACACGTCAAAAATT+AGG - chr1_1:62636957-62636976 Msa0034590:intron 35.0%
ATCCAGAATATGATGCCAAA+AGG - chr1_1:62637042-62637061 Msa0034590:intron 35.0%
! TTCATATAACTGCTGCCTTT+TGG + chr1_1:62637060-62637079 None:intergenic 35.0%
TAGGAGAAAATTCCAATGGA+TGG + chr1_1:62637088-62637107 None:intergenic 35.0%
! CAATGCTGGTCTACATATAT+AGG - chr1_1:62637166-62637185 Msa0034590:intron 35.0%
AACTAGTAAGTAAACTCTGG+GGG + chr1_1:62637254-62637273 None:intergenic 35.0%
ATTGAATATCACTGTACCTC+TGG + chr1_1:62637300-62637319 None:intergenic 35.0%
TGATGCTGTAACTTAGGATT+TGG - chr1_1:62637333-62637352 Msa0034590:intron 35.0%
!! GGATTTGGTGTATTATTAGG+TGG - chr1_1:62637348-62637367 Msa0034590:intron 35.0%
! TTTGGTGTATTATTAGGTGG+GGG - chr1_1:62637351-62637370 Msa0034590:intron 35.0%
!! CGAGCTTTTTGAATTTTTGG+AGG - chr1_1:62637469-62637488 Msa0034590:intron 35.0%
CCTGCAGAGAATATTAATAC+AGG + chr1_1:62637656-62637675 None:intergenic 35.0%
CCTGTATTAATATTCTCTGC+AGG - chr1_1:62637653-62637672 Msa0034590:intron 35.0%
GCCTTAGAACCTGTTAATAT+TGG + chr1_1:62637807-62637826 None:intergenic 35.0%
ATGTGAAGATAGTATCCAAC+AGG - chr1_1:62637851-62637870 Msa0034590:CDS 35.0%
! GGCCAACTTGTATCTTTTAA+AGG - chr1_1:62637889-62637908 Msa0034590:intron 35.0%
!! AATATATTTTTCAGAGGCCG+GGG - chr1_1:62637979-62637998 Msa0034590:intron 35.0%
! TAATTGCCTTTAGGTTTCAC+TGG - chr1_1:62638016-62638035 Msa0034590:intron 35.0%
GTATTACCAGTGAAACCTAA+AGG + chr1_1:62638025-62638044 None:intergenic 35.0%
AAATGAGCATGCTCTTGATA+TGG - chr1_1:62638348-62638367 Msa0034590:intron 35.0%
TTACGATACTCGAATTTCTG+TGG - chr1_1:62638501-62638520 Msa0034590:intron 35.0%
TACGATACTCGAATTTCTGT+GGG - chr1_1:62638502-62638521 Msa0034590:intron 35.0%
AAATCACAGCAATTAGAGTC+TGG + chr1_1:62638550-62638569 None:intergenic 35.0%
!! CTGGTATTTTGAATTGTTGC+AGG - chr1_1:62638643-62638662 Msa0034590:intron 35.0%
TTATGTTAAGTACCAGGTGA+AGG - chr1_1:62638862-62638881 Msa0034590:intron 35.0%
TATGTTAAGTACCAGGTGAA+GGG - chr1_1:62638863-62638882 Msa0034590:intron 35.0%
! ACTTTGATAACTTCCCACAT+GGG + chr1_1:62638941-62638960 None:intergenic 35.0%
! GCTAAGAGTATATGGTTAAC+TGG + chr1_1:62639001-62639020 None:intergenic 35.0%
! TTTTTGTCTTACACATCCCA+AGG - chr1_1:62639032-62639051 Msa0034590:intron 35.0%
GGAGAAATTAATAGGAACCT+TGG + chr1_1:62639052-62639071 None:intergenic 35.0%
! ATTTTCTGTTGCGATTGTGA+GGG - chr1_1:62639237-62639256 Msa0034590:five_prime_UTR 35.0%
! TGATGTTGAAGAAGTGTAGC+GGG + chr1_1:62636133-62636152 None:intergenic 40.0%
GCTACACTTCTTCAACATCA+AGG - chr1_1:62636133-62636152 Msa0034590:three_prime_UTR 40.0%
!! AGTTTGTTGTGGAGCAAAAC+AGG + chr1_1:62636326-62636345 None:intergenic 40.0%
!! GAATTGCAGCAAGTTTGTTG+TGG + chr1_1:62636337-62636356 None:intergenic 40.0%
TATATAGTGTGGGACTTCTC+AGG + chr1_1:62636562-62636581 None:intergenic 40.0%
!!! TTTTGGAGGGTTTTTTTGGG+AGG - chr1_1:62636669-62636688 Msa0034590:intron 40.0%
!!! TTTGGAGGGTTTTTTTGGGA+GGG - chr1_1:62636670-62636689 Msa0034590:intron 40.0%
!!! TTTTGGGTTAATGGAACTCG+CGG - chr1_1:62636893-62636912 Msa0034590:CDS 40.0%
! TGCCTTTTGGCATCATATTC+TGG + chr1_1:62637047-62637066 None:intergenic 40.0%
AGGGTAGGAGAAAATTCCAA+TGG + chr1_1:62637092-62637111 None:intergenic 40.0%
! TTGGAATTTTCTCCTACCCT+TGG - chr1_1:62637092-62637111 Msa0034590:intron 40.0%
! TGGAATTTTCTCCTACCCTT+GGG - chr1_1:62637093-62637112 Msa0034590:intron 40.0%
GGAAGAGAAAAGGAAACTCA+TGG - chr1_1:62637118-62637137 Msa0034590:intron 40.0%
AAAGGAAACTCATGGTAGAG+TGG - chr1_1:62637126-62637145 Msa0034590:intron 40.0%
TGGTAGAGTGGTATGTGATT+CGG - chr1_1:62637138-62637157 Msa0034590:intron 40.0%
ACGCATGCTCTTCTTATTGA+AGG - chr1_1:62637377-62637396 Msa0034590:CDS 40.0%
CATGCTCTTCTTATTGAAGG+AGG - chr1_1:62637380-62637399 Msa0034590:CDS 40.0%
!! GCTAACATAGCTTTTAGGGA+AGG - chr1_1:62637440-62637459 Msa0034590:intron 40.0%
GAAGATTCGATTGCTGACAT+TGG - chr1_1:62637589-62637608 Msa0034590:CDS 40.0%
! GCTTGCTGATATCATTGAAG+AGG - chr1_1:62637676-62637695 Msa0034590:intron 40.0%
GAAGATAGTATCCAACAGGA+TGG - chr1_1:62637855-62637874 Msa0034590:CDS 40.0%
!! GAACGATTCGGTGATATTGA+TGG - chr1_1:62638385-62638404 Msa0034590:CDS 40.0%
CTTGAGCAAGTCATTGTCAT+CGG + chr1_1:62638416-62638435 None:intergenic 40.0%
AGAACCAATGTTCTCCTTCT+TGG - chr1_1:62638439-62638458 Msa0034590:intron 40.0%
ATCACCAAGAAGGAGAACAT+TGG + chr1_1:62638446-62638465 None:intergenic 40.0%
TAAGTGAGTTCTCAACGTTG+TGG + chr1_1:62638671-62638690 None:intergenic 40.0%
!! TGGTAAGTTGATTAGCTGGA+TGG - chr1_1:62638724-62638743 Msa0034590:intron 40.0%
ATGTTAAGTACCAGGTGAAG+GGG - chr1_1:62638864-62638883 Msa0034590:intron 40.0%
! CACTTTGATAACTTCCCACA+TGG + chr1_1:62638942-62638961 None:intergenic 40.0%
CATGTGGGAAGTTATCAAAG+TGG - chr1_1:62638940-62638959 Msa0034590:CDS 40.0%
TCTCTCATATGTGCTCAAGT+GGG - chr1_1:62638963-62638982 Msa0034590:CDS 40.0%
! GGGAAAAAAGTGCAGTAAAG+GGG + chr1_1:62639105-62639124 None:intergenic 40.0%
! GGGGAAAAAAGTGCAGTAAA+GGG + chr1_1:62639106-62639125 None:intergenic 40.0%
! AGGGGAAAAAAGTGCAGTAA+AGG + chr1_1:62639107-62639126 None:intergenic 40.0%
! CATTTTCTGTTGCGATTGTG+AGG - chr1_1:62639236-62639255 Msa0034590:five_prime_UTR 40.0%
GTGACCTGTAATTCATGCAG+AGG - chr1_1:62635930-62635949 Msa0034590:three_prime_UTR 45.0%
TCAGCCTCTGCATGAATTAC+AGG + chr1_1:62635937-62635956 None:intergenic 45.0%
GGCGATAACTCATTTGAGTG+TGG + chr1_1:62636062-62636081 None:intergenic 45.0%
AAAGTGACGTGGGAGAAAGT+TGG + chr1_1:62636109-62636128 None:intergenic 45.0%
AGAGGGGGTGAAGAAGAAAA+AGG + chr1_1:62636161-62636180 None:intergenic 45.0%
ATTGGGTTCAGAATTGACGC+TGG - chr1_1:62636292-62636311 Msa0034590:CDS 45.0%
GAGTGTGACTCGATTGATCT+TGG + chr1_1:62636742-62636761 None:intergenic 45.0%
!! ACGTGTAAGGGAGCATTAGA+GGG + chr1_1:62636949-62636968 None:intergenic 45.0%
! GAGTCATTTCTAGGCAGTCA+TGG - chr1_1:62637002-62637021 Msa0034590:intron 45.0%
CTGGATTATCCTGCTGCAAA+AGG + chr1_1:62637028-62637047 None:intergenic 45.0%
!! GTGATTCGGTTTCTCAATGC+TGG - chr1_1:62637152-62637171 Msa0034590:intron 45.0%
! TCACACATTTTGTGCACCAG+AGG - chr1_1:62637281-62637300 Msa0034590:intron 45.0%
!! TTTTTCAGACTCACTCGCCA+GGG + chr1_1:62638097-62638116 None:intergenic 45.0%
!!! TTTTTTCAGACTCACTCGCC+AGG + chr1_1:62638098-62638117 None:intergenic 45.0%
AGCAAGTCATTGTCATCGGT+TGG + chr1_1:62638412-62638431 None:intergenic 45.0%
GCTGGATGGTAACACATCTT+TGG - chr1_1:62638738-62638757 Msa0034590:intron 45.0%
GTCTCTCATATGTGCTCAAG+TGG - chr1_1:62638962-62638981 Msa0034590:CDS 45.0%
!!! CTTTTTTCCCCTCCTGGATA+TGG - chr1_1:62639115-62639134 Msa0034590:intron 45.0%
!! TGACGATGGATTGGAGTTGG+AGG + chr1_1:62636083-62636102 None:intergenic 50.0%
!! TGGTGACGATGGATTGGAGT+TGG + chr1_1:62636086-62636105 None:intergenic 50.0%
!! AGTTGGTGGTGACGATGGAT+TGG + chr1_1:62636092-62636111 None:intergenic 50.0%
!! GAGAAAGTTGGTGGTGACGA+TGG + chr1_1:62636097-62636116 None:intergenic 50.0%
! TGTAGCGGGAAAAGTGACGT+GGG + chr1_1:62636119-62636138 None:intergenic 50.0%
! CAATAAGGGGGGTGTAGGAA+AGG + chr1_1:62636195-62636214 None:intergenic 50.0%
! ACATGCAATAAGGGGGGTGT+AGG + chr1_1:62636200-62636219 None:intergenic 50.0%
GGTTCAGAATTGACGCTGGT+GGG - chr1_1:62636296-62636315 Msa0034590:CDS 50.0%
!! CTGAAGCTTTTGAGGACCAG+CGG + chr1_1:62636363-62636382 None:intergenic 50.0%
! TTGAGATACTAGTGGGCGTG+AGG - chr1_1:62636627-62636646 Msa0034590:intron 50.0%
!! CGTGTAAGGGAGCATTAGAG+GGG + chr1_1:62636948-62636967 None:intergenic 50.0%
!! GACGTGTAAGGGAGCATTAG+AGG + chr1_1:62636950-62636969 None:intergenic 50.0%
! ATTTTCTCCTACCCTTGGGC+TGG - chr1_1:62637097-62637116 Msa0034590:intron 50.0%
! CCTTTTCTCTTCCAGCCCAA+GGG + chr1_1:62637111-62637130 None:intergenic 50.0%
! TCCTTTTCTCTTCCAGCCCA+AGG + chr1_1:62637112-62637131 None:intergenic 50.0%
TCACCGAATCGTTCGTGAAC+AGG + chr1_1:62638379-62638398 None:intergenic 50.0%
! CTCCTTCTTGGTGATCACAC+TGG - chr1_1:62638451-62638470 Msa0034590:intron 50.0%
CTCCAGTGTGATCACCAAGA+AGG + chr1_1:62638456-62638475 None:intergenic 50.0%
TGGTGATCACACTGGAGACT+TGG - chr1_1:62638459-62638478 Msa0034590:intron 50.0%
GGTGATCACACTGGAGACTT+GGG - chr1_1:62638460-62638479 Msa0034590:intron 50.0%
GGAGACTTGGGAATGTCTGA+TGG - chr1_1:62638472-62638491 Msa0034590:intron 50.0%
TTAAGTACCAGGTGAAGGGG+TGG - chr1_1:62638867-62638886 Msa0034590:intron 50.0%
!!! ACTGCACTTTTTTCCCCTCC+TGG - chr1_1:62639109-62639128 Msa0034590:intron 50.0%
TGCGACAGTGACATAGACAC+CGG - chr1_1:62639330-62639349 Msa0034590:five_prime_UTR 50.0%
GTGACGTGGGAGAAAGTTGG+TGG + chr1_1:62636106-62636125 None:intergenic 55.0%
! GTGTAGCGGGAAAAGTGACG+TGG + chr1_1:62636120-62636139 None:intergenic 55.0%
GGGTTCAGAATTGACGCTGG+TGG - chr1_1:62636295-62636314 Msa0034590:CDS 55.0%
CTTGCTGCAATTCGTTCCGC+TGG - chr1_1:62636344-62636363 Msa0034590:intron 55.0%
CGCTGGTCCTCAAAAGCTTC+AGG - chr1_1:62636361-62636380 Msa0034590:intron 55.0%
! AGATACTAGTGGGCGTGAGG+TGG - chr1_1:62636630-62636649 Msa0034590:intron 55.0%
GTCACACTCCAAACGTGCAG+TGG - chr1_1:62636753-62636772 Msa0034590:CDS 55.0%
ACACTCCAAACGTGCAGTGG+TGG - chr1_1:62636756-62636775 Msa0034590:CDS 55.0%
CACTCCAAACGTGCAGTGGT+GGG - chr1_1:62636757-62636776 Msa0034590:CDS 55.0%
! CAGTCATGGCCTTTTGCAGC+AGG - chr1_1:62637016-62637035 Msa0034590:intron 55.0%
TTCTCTTCCAGCCCAAGGGT+AGG + chr1_1:62637107-62637126 None:intergenic 55.0%
! CCCTTGGGCTGGAAGAGAAA+AGG - chr1_1:62637108-62637127 Msa0034590:intron 55.0%
GCGCCTGTTCACGAACGATT+CGG - chr1_1:62638373-62638392 Msa0034590:CDS 55.0%
CATGGGCGCATCATTCTGCA+GGG + chr1_1:62638924-62638943 None:intergenic 55.0%
ACATGGGCGCATCATTCTGC+AGG + chr1_1:62638925-62638944 None:intergenic 55.0%
TGCAGAATGATGCGCCCATG+TGG - chr1_1:62638924-62638943 Msa0034590:CDS 55.0%
GCAGAATGATGCGCCCATGT+GGG - chr1_1:62638925-62638944 Msa0034590:CDS 55.0%
TTTCCCCTCCTGGATATGGC+TGG - chr1_1:62639119-62639138 Msa0034590:intron 55.0%
ATCGCCAGCCATATCCAGGA+GGG + chr1_1:62639126-62639145 None:intergenic 55.0%
AATCGCCAGCCATATCCAGG+AGG + chr1_1:62639127-62639146 None:intergenic 55.0%
GCTAATCGCCAGCCATATCC+AGG + chr1_1:62639130-62639149 None:intergenic 55.0%
ACTGCCCACCACTGCACGTT+TGG + chr1_1:62636764-62636783 None:intergenic 60.0%
TCGCCAGCCATATCCAGGAG+GGG + chr1_1:62639125-62639144 None:intergenic 60.0%
TACTCGGCCACCCCTTCACC+TGG + chr1_1:62638877-62638896 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 62635871 62639403 62635871 ID=Msa0034590;Name=Msa0034590
chr1_1 mRNA 62635871 62639403 62635871 ID=Msa0034590-mRNA-1;Parent=Msa0034590;Name=Msa0034590-mRNA-1;_AED=0.11;_eAED=0.11;_QI=198|1|1|1|1|1|10|412|343
chr1_1 exon 62635871 62636345 62635871 ID=Msa0034590-mRNA-1:exon:19825;Parent=Msa0034590-mRNA-1
chr1_1 exon 62636549 62636609 62636549 ID=Msa0034590-mRNA-1:exon:19824;Parent=Msa0034590-mRNA-1
chr1_1 exon 62636744 62636951 62636744 ID=Msa0034590-mRNA-1:exon:19823;Parent=Msa0034590-mRNA-1
chr1_1 exon 62637364 62637457 62637364 ID=Msa0034590-mRNA-1:exon:19822;Parent=Msa0034590-mRNA-1
chr1_1 exon 62637577 62637633 62637577 ID=Msa0034590-mRNA-1:exon:19821;Parent=Msa0034590-mRNA-1
chr1_1 exon 62637784 62637907 62637784 ID=Msa0034590-mRNA-1:exon:19820;Parent=Msa0034590-mRNA-1
chr1_1 exon 62638127 62638259 62638127 ID=Msa0034590-mRNA-1:exon:19819;Parent=Msa0034590-mRNA-1
chr1_1 exon 62638354 62638414 62638354 ID=Msa0034590-mRNA-1:exon:19818;Parent=Msa0034590-mRNA-1
chr1_1 exon 62638892 62639036 62638892 ID=Msa0034590-mRNA-1:exon:19817;Parent=Msa0034590-mRNA-1
chr1_1 exon 62639120 62639403 62639120 ID=Msa0034590-mRNA-1:exon:19816;Parent=Msa0034590-mRNA-1
chr1_1 five_prime_UTR 62639206 62639403 62639206 ID=Msa0034590-mRNA-1:five_prime_utr;Parent=Msa0034590-mRNA-1
chr1_1 CDS 62639120 62639205 62639120 ID=Msa0034590-mRNA-1:cds;Parent=Msa0034590-mRNA-1
chr1_1 CDS 62638892 62639036 62638892 ID=Msa0034590-mRNA-1:cds;Parent=Msa0034590-mRNA-1
chr1_1 CDS 62638354 62638414 62638354 ID=Msa0034590-mRNA-1:cds;Parent=Msa0034590-mRNA-1
chr1_1 CDS 62638127 62638259 62638127 ID=Msa0034590-mRNA-1:cds;Parent=Msa0034590-mRNA-1
chr1_1 CDS 62637784 62637907 62637784 ID=Msa0034590-mRNA-1:cds;Parent=Msa0034590-mRNA-1
chr1_1 CDS 62637577 62637633 62637577 ID=Msa0034590-mRNA-1:cds;Parent=Msa0034590-mRNA-1
chr1_1 CDS 62637364 62637457 62637364 ID=Msa0034590-mRNA-1:cds;Parent=Msa0034590-mRNA-1
chr1_1 CDS 62636744 62636951 62636744 ID=Msa0034590-mRNA-1:cds;Parent=Msa0034590-mRNA-1
chr1_1 CDS 62636549 62636609 62636549 ID=Msa0034590-mRNA-1:cds;Parent=Msa0034590-mRNA-1
chr1_1 CDS 62636283 62636345 62636283 ID=Msa0034590-mRNA-1:cds;Parent=Msa0034590-mRNA-1
chr1_1 three_prime_UTR 62635871 62636282 62635871 ID=Msa0034590-mRNA-1:three_prime_utr;Parent=Msa0034590-mRNA-1
Gene Sequence

>Msa0034590

ATGAGTTATCGCCTCCAACTCCAATCCATCGTCACCACCAACTTTCTCCCACGTCACTTTTCCCGCTACACTTCTTCAACATCAAGGGTTTCGTTTTCTACATTTTGTTGTGGAAAACATTTGGAAATGGAGGATATCAAATTGGGTTCAGAATTGACGCTGGTGGGTGATCCTGTTTTGCTCCACAACAAACTTGCTGCAATTCGTTCCGCTGGTCCTCAAAAGCTTCAGGTGATCGCTGATTTTGATGCCACATTAACAAAGTTTTGGGTTAATGGAACTCGCGGCCAAAGCAGTCATGGCCTTTTGCAGCAGGATAATCCAGAATATGATGCCAAAAGGCAGCAGTTATATGAACATTACCATCCATTGGAATTTTCTCCTACCCTTGGGCTGGAAGAGAAAAGGAAACTCATGGTAGAGTGGTGGGGGAAAACGCATGCTCTTCTTATTGAAGGAGGACTTACATATGAATCAATAAAACAATCAGTTGCTAATGCTAACATAGCTTTTAGGGAAGGTGTTTCCGAGCTTTTTGAATTTTTGGAGGAAAGAGACATTCCTGTATTAATATTCTCTGCAGGGCTTGCTGATATCATTGAAGAGGTTCTAAGGCAGAAGCTTCGCAGATCCTTCAAAAATGTGAAGATAGTATCCAACAGGATGGTATTTAACAATGGCCAACTTGTATCTTTTAAAGGAAAATTGATTCACAGCTTAAATAAAAATGAGCATGCTCTTGATATGGCTGCGCCTGTTCACGAACGATTCGGTGATATTGATGGTCCAACCGATGACAATGACTTGCTCAAGAAGAGAACCAATGTTCTCCTTCTTGGTGATCACACTGGAGACTTGGGAATGTCTGATGGTTTAAATTACGATACTCGAATTTCTGTGGGATTTTTGAACCACAACGTTGAGAACTCACTTAGCTGCTATCGAGAAGCTTTTGATGTTGTTTTAATGAATGATGCGCCCATGTGGGAAGTTATCAAAGTGGTCTCTCATATGTGCTCAAGTGGGAACTGA

Protein sequence

>Msa0034590

MSYRLQLQSIVTTNFLPRHFSRYTSSTSRVSFSTFCCGKHLEMEDIKLGSELTLVGDPVLLHNKLAAIRSAGPQKLQVIADFDATLTKFWVNGTRGQSSHGLLQQDNPEYDAKRQQLYEHYHPLEFSPTLGLEEKRKLMVEWWGKTHALLIEGGLTYESIKQSVANANIAFREGVSELFEFLEERDIPVLIFSAGLADIIEEVLRQKLRRSFKNVKIVSNRMVFNNGQLVSFKGKLIHSLNKNEHALDMAAPVHERFGDIDGPTDDNDLLKKRTNVLLLGDHTGDLGMSDGLNYDTRISVGFLNHNVENSLSCYREAFDVVLMNDAPMWEVIKVVSHMCSSGN*