AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0473000


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0473000 MtrunA17_Chr3g0128501 97.831 415 9 0 1 415 1 415 0.0 850
Msa0473000 MtrunA17_Chr1g0192081 58.313 403 138 7 16 414 4 380 6.92e-159 452
Msa0473000 MtrunA17_Chr1g0195841 51.811 359 171 2 57 414 5 362 7.21e-128 373
Msa0473000 MtrunA17_Chr7g0269031 55.155 194 69 5 223 413 141 319 4.79e-54 182
Msa0473000 MtrunA17_Chr7g0269031 35.096 208 106 5 60 254 71 262 6.44e-29 115
Msa0473000 MtrunA17_Chr4g0073441 34.317 271 165 5 55 314 15 283 1.10e-42 153
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0473000 AT3G56440.1 74.227 388 89 2 27 414 10 386 0.0 597
Msa0473000 AT2G40810.1 71.675 406 96 3 10 414 1 388 0.0 596
Msa0473000 AT2G40810.2 71.675 406 96 3 10 414 1 388 0.0 596
Msa0473000 AT3G56440.2 74.656 363 81 2 27 389 10 361 0.0 561
Msa0473000 AT3G56440.3 75.232 323 69 2 27 349 10 321 2.61e-177 498
Msa0473000 AT3G62770.1 57.323 396 145 5 23 414 45 420 1.35e-152 439
Msa0473000 AT3G62770.3 56.604 371 137 5 23 389 45 395 9.08e-140 405
Msa0473000 AT5G05150.1 47.666 407 164 5 10 413 1 361 7.03e-125 366
Msa0473000 AT2G40810.3 73.529 170 42 1 245 414 97 263 1.94e-82 254
Msa0473000 AT2G40810.3 53.333 120 40 2 10 128 1 105 9.43e-32 122
Msa0473000 AT4G30510.1 32.509 283 181 6 53 330 9 286 3.90e-38 141
Msa0473000 AT4G30510.2 32.766 235 150 5 101 330 1 232 3.02e-30 119

Find 136 sgRNAs with CRISPR-Local

Find 334 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAATTTCCGATCATTGAATT+TGG 0.146013 3_3:+75493865 None:intergenic
CATTCTGAACTAAAATATTT+TGG 0.153937 3_3:+75491702 None:intergenic
ATCCCAAATCAAAACTTTAT+TGG 0.177425 3_3:+75493567 None:intergenic
TTGGGGTTGGCACCGGTATT+TGG 0.187638 3_3:+75492405 None:intergenic
AACCTTTCAAAGAGACTTTC+AGG 0.219715 3_3:-75493687 Msa0473000:CDS
TGCAGCTTTGATCAAGTAAA+TGG 0.230085 3_3:-75490676 Msa0473000:CDS
AGAGACAGGAATTTGGAATT+TGG 0.237749 3_3:-75495558 Msa0473000:five_prime_UTR
CTGATTTGTTCTCAGTTTCA+TGG 0.238417 3_3:-75493771 Msa0473000:CDS
CAGAGAGAGAGACAGGAATT+TGG 0.240091 3_3:-75495565 Msa0473000:five_prime_UTR
ACTAAATTCATTGTGGCATT+TGG 0.273806 3_3:-75491648 Msa0473000:CDS
AACTTGAGAGTGAGGGTGTT+TGG 0.279915 3_3:-75492516 Msa0473000:CDS
TCTTCATCAAATTGATACTA+TGG 0.283426 3_3:-75493413 Msa0473000:CDS
TCAGAGTGAAGCATGCAATT+TGG 0.287147 3_3:+75493254 None:intergenic
TCCCAAATCAAAACTTTATT+GGG 0.292270 3_3:+75493568 None:intergenic
CATGAAAGATAATGATGAAT+TGG 0.295519 3_3:+75492386 None:intergenic
GATATATGTTTATAACTTCA+TGG 0.302452 3_3:-75493446 Msa0473000:CDS
ACTTGAGAGTGAGGGTGTTT+GGG 0.303097 3_3:-75492515 Msa0473000:CDS
CAGAGTGAAGCATGCAATTT+GGG 0.308247 3_3:+75493255 None:intergenic
GTTCTCAGTTTCATGGAATC+AGG 0.310536 3_3:-75493764 Msa0473000:CDS
CCATTCAAATACATTTGTTA+TGG 0.324119 3_3:-75493359 Msa0473000:CDS
CCTCTGCATATGAATATATA+TGG 0.330625 3_3:-75490310 Msa0473000:three_prime_UTR
AACTTTATTGGGTGGATAGT+TGG 0.360324 3_3:+75493579 None:intergenic
ATGAAAGATAATGATGAATT+GGG 0.360564 3_3:+75492387 None:intergenic
GAAAATTTATTGCTGGAAAG+AGG 0.362639 3_3:-75495211 Msa0473000:five_prime_UTR
GAAGATGAGGCCCCACTATT+GGG 0.364649 3_3:+75493835 None:intergenic
AGAAGATGAGGCCCCACTAT+TGG 0.366717 3_3:+75493834 None:intergenic
GGGCCTCATCTTCTCTTTCC+CGG 0.370929 3_3:-75493825 Msa0473000:CDS
CTGAAGTGAAAATTTATTGC+TGG 0.391736 3_3:-75495218 Msa0473000:five_prime_UTR
TCATTATATGTTGGATTTCG+TGG 0.394623 3_3:+75495609 None:intergenic
AGCATGCAATTTGGGAATCA+TGG 0.405618 3_3:+75493263 None:intergenic
GGTTAGAAGAGGGGTGGATA+GGG 0.417025 3_3:-75492619 Msa0473000:CDS
CATCTCAGTTGGAGGATTGT+TGG 0.424111 3_3:-75490477 Msa0473000:three_prime_UTR
CACTTGATGCTGCCAACCAC+TGG 0.429688 3_3:+75492562 None:intergenic
TTGATACTATGGCAAATCCT+AGG 0.431047 3_3:-75493402 Msa0473000:CDS
GCAGCTTTGATCAAGTAAAT+GGG 0.450799 3_3:-75490675 Msa0473000:CDS
CTGTCATTGATGTCTGCATC+TGG 0.455833 3_3:+75493802 None:intergenic
AAGAGTTTATTGCTTTGTGT+TGG 0.456916 3_3:+75490526 None:intergenic
AGGTTAGAAGAGGGGTGGAT+AGG 0.457915 3_3:-75492620 Msa0473000:CDS
AATTGTGAATACCCCAATAG+TGG 0.458125 3_3:-75493847 Msa0473000:CDS
TTCGTCATTTCATTATATGT+TGG 0.458601 3_3:+75495600 None:intergenic
AGAATCTTCAATACAATGGA+TGG 0.459968 3_3:-75493181 Msa0473000:CDS
AACAATCCTCCAACTGAGAT+GGG 0.460394 3_3:+75490479 None:intergenic
AAAATTTATTGCTGGAAAGA+GGG 0.469548 3_3:-75495210 Msa0473000:five_prime_UTR
ACCGGTATTTGGAGAAATCA+AGG 0.473373 3_3:+75492416 None:intergenic
AGCAACATCCTAGCGCTTGT+TGG 0.476042 3_3:-75493616 Msa0473000:CDS
AAAGAAAATCAAAATTGAAA+AGG 0.477518 3_3:-75490417 Msa0473000:three_prime_UTR
CAGGCCCTTGGACAGCAGTT+GGG 0.479532 3_3:+75492475 None:intergenic
CATTGATGTCTGCATCTGGC+CGG 0.479957 3_3:+75493806 None:intergenic
TATTTCGTTTGTAAATATTG+TGG 0.480557 3_3:-75490441 Msa0473000:three_prime_UTR
TTCCATCCATGCCAGAGATT+AGG 0.483661 3_3:+75491610 None:intergenic
TGAGAAACAGAGAGAGAGAC+AGG 0.486533 3_3:-75495572 Msa0473000:five_prime_UTR
GCTGCCAACCACTGGACATT+GGG 0.488358 3_3:+75492570 None:intergenic
GAAGTTCGAGTTGAACACTT+TGG 0.488765 3_3:-75493313 Msa0473000:CDS
ACATTTGTTATGGCTTGTCC+AGG 0.490027 3_3:-75493349 Msa0473000:CDS
TGATACTATGGCAAATCCTA+GGG 0.491747 3_3:-75493401 Msa0473000:CDS
CCCTTGATTTCTCCAAATAC+CGG 0.496555 3_3:-75492417 Msa0473000:CDS
GTCTCCCAATGTCCAGTGGT+TGG 0.498399 3_3:-75492574 Msa0473000:CDS
ACATTTAGATCTGAAGTTCG+TGG 0.499114 3_3:-75493514 Msa0473000:CDS
GTCCTAATCTCTGGCATGGA+TGG 0.500489 3_3:-75491612 Msa0473000:CDS
CCATAACAAATGTATTTGAA+TGG 0.510743 3_3:+75493359 None:intergenic
TTAGCTGCTGGAACAAGTCA+TGG 0.511790 3_3:-75493730 Msa0473000:CDS
CAACAATCCTCCAACTGAGA+TGG 0.513272 3_3:+75490478 None:intergenic
GAATTCTGATGAAGTAGTAC+AGG 0.516241 3_3:+75492456 None:intergenic
CGCCTGAAAGTCTCTTTGAA+AGG 0.516860 3_3:+75493685 None:intergenic
CAGAACACTGTCCTAATCTC+TGG 0.520013 3_3:-75491621 Msa0473000:CDS
TGCTTCACTCTGACAACGGA+CGG 0.522941 3_3:-75493244 Msa0473000:CDS
CTATCGTGTAGGTTAGAAGA+GGG 0.524773 3_3:-75492629 Msa0473000:intron
GCATGCAATTTGGGAATCAT+GGG 0.526357 3_3:+75493264 None:intergenic
CTAAAATGTTAAATTAAGCA+CGG 0.527344 3_3:-75490619 Msa0473000:exon
ACAGGCCCTTGGACAGCAGT+TGG 0.528221 3_3:+75492474 None:intergenic
TAAAATGTTAAATTAAGCAC+GGG 0.528454 3_3:-75490618 Msa0473000:exon
TCGTCTGTTTCAACATCTCA+AGG 0.528457 3_3:-75493895 Msa0473000:CDS
ATATTTCCAAATTCAATGAT+CGG 0.530341 3_3:-75493871 Msa0473000:CDS
CTTGCAACTGCTAGTGAGAA+GGG 0.530985 3_3:-75493214 Msa0473000:CDS
TGATGAATTGGGGTTGGCAC+CGG 0.533284 3_3:+75492398 None:intergenic
GACTACGGTTGCTTAGCTGC+TGG 0.535019 3_3:-75493742 Msa0473000:CDS
CAAATCAAAACTTTATTGGG+TGG 0.537171 3_3:+75493571 None:intergenic
GAAGAAGAAGAATTAGGGAT+CGG 0.539177 3_3:+75495504 None:intergenic
GATCATCAGAGCAGGTGCAT+TGG 0.542145 3_3:-75493544 Msa0473000:CDS
ATTGATGTCTGCATCTGGCC+GGG 0.542391 3_3:+75493807 None:intergenic
ATACGCCCAACTGCTGTCCA+AGG 0.547866 3_3:-75492480 Msa0473000:CDS
CTCTGTCTCCCAATGTCCAG+TGG 0.551409 3_3:-75492578 Msa0473000:CDS
TAATCTCTGGCATGGATGGA+AGG 0.552266 3_3:-75491608 Msa0473000:intron
GCTTCACTCTGACAACGGAC+GGG 0.555040 3_3:-75493243 Msa0473000:CDS
ACTTCTCCTTTGTGACGACC+TGG 0.555547 3_3:+75493331 None:intergenic
GATGAAGTAGTACAGGCCCT+TGG 0.557475 3_3:+75492463 None:intergenic
TCTTGCAACTGCTAGTGAGA+AGG 0.557640 3_3:-75493215 Msa0473000:CDS
GAGAGTGAGGGTGTTTGGGG+AGG 0.558785 3_3:-75492511 Msa0473000:CDS
ATTGTGAATACCCCAATAGT+GGG 0.562593 3_3:-75493846 Msa0473000:CDS
CTTGAGAGTGAGGGTGTTTG+GGG 0.564799 3_3:-75492514 Msa0473000:CDS
ACTACAAGTCCTCGACGAGC+TGG 0.566326 3_3:-75490580 Msa0473000:three_prime_UTR
CGTGTAGGTTAGAAGAGGGG+TGG 0.568066 3_3:-75492625 Msa0473000:intron
GACGAATTGATATGAGATGA+GGG 0.569550 3_3:+75493913 None:intergenic
CACTGTCCTAATCTCTGGCA+TGG 0.571130 3_3:-75491616 Msa0473000:CDS
ACGAATTGATATGAGATGAG+GGG 0.571530 3_3:+75493914 None:intergenic
CTACAGCACCAACAAGCGCT+AGG 0.572951 3_3:+75493608 None:intergenic
TCATCATTATCTTTCATGAG+AGG 0.573870 3_3:-75492381 Msa0473000:intron
TGCATGCTTCACTCTGACAA+CGG 0.580675 3_3:-75493248 Msa0473000:CDS
TGCTGCCAACCACTGGACAT+TGG 0.582381 3_3:+75492569 None:intergenic
GGGAATCATGTTTACATACA+AGG 0.584659 3_3:+75490501 None:intergenic
TTTGGGATGATCATCAGAGC+AGG 0.585812 3_3:-75493552 Msa0473000:CDS
CTTTGACTGATTGATTTCCA+CGG 0.585960 3_3:-75495160 Msa0473000:intron
GAATCTTCAATACAATGGAT+GGG 0.589619 3_3:-75493180 Msa0473000:CDS
ATATATTCAACTTGAGAGTG+AGG 0.590254 3_3:-75492524 Msa0473000:CDS
AGATAATGATGAATTGGGGT+TGG 0.592572 3_3:+75492392 None:intergenic
GTATAACTTGCACTATCATG+TGG 0.595356 3_3:-75490352 Msa0473000:three_prime_UTR
AAGATGAGGCCCCACTATTG+GGG 0.595901 3_3:+75493836 None:intergenic
TCTCACTAGCAGTTGCAAGA+AGG 0.597081 3_3:+75493218 None:intergenic
CGAATTGATATGAGATGAGG+GGG 0.598276 3_3:+75493915 None:intergenic
GATTAGAATCTTCAATACAA+TGG 0.601484 3_3:-75493185 Msa0473000:CDS
AGACGAATTGATATGAGATG+AGG 0.607029 3_3:+75493912 None:intergenic
TATATTCAACTTGAGAGTGA+GGG 0.607920 3_3:-75492523 Msa0473000:CDS
GATCGGAATGCAAAACGTGA+AGG 0.611307 3_3:+75495521 None:intergenic
TCTATCGTGTAGGTTAGAAG+AGG 0.613791 3_3:-75492630 Msa0473000:intron
CAGCTTTGATCAAGTAAATG+GGG 0.615526 3_3:-75490674 Msa0473000:CDS
ACAATCCTCCAACTGAGATG+GGG 0.616647 3_3:+75490480 None:intergenic
CAATCCTCCAACTGAGATGG+GGG 0.618630 3_3:+75490481 None:intergenic
TACGCCCAACTGCTGTCCAA+GGG 0.621281 3_3:-75492479 Msa0473000:CDS
GTTTCATGGAATCAGGACTA+CGG 0.621760 3_3:-75493757 Msa0473000:CDS
TGGCCGGGAAAGAGAAGATG+AGG 0.624207 3_3:+75493822 None:intergenic
TATAACTTGCACTATCATGT+GGG 0.628182 3_3:-75490351 Msa0473000:three_prime_UTR
TGAAAACACTAAATTCATTG+TGG 0.629098 3_3:-75491655 Msa0473000:CDS
GCTTGTCCAGGTCGTCACAA+AGG 0.632605 3_3:-75493337 Msa0473000:CDS
CCGGTATTTGGAGAAATCAA+GGG 0.637476 3_3:+75492417 None:intergenic
GGAGACATCATATTTACATG+TGG 0.642439 3_3:+75490547 None:intergenic
CAAGCGCTAGGATGTTGCTA+CGG 0.644150 3_3:+75493620 None:intergenic
TTATTGAGTGCAGAAAATGC+TGG 0.654198 3_3:-75493944 Msa0473000:intron
CCATATATATTCATATGCAG+AGG 0.659672 3_3:+75490310 None:intergenic
TTGGCAGCATCAAGTGACAA+AGG 0.665997 3_3:-75492555 Msa0473000:CDS
GATACTATGGCAAATCCTAG+GGG 0.691243 3_3:-75493400 Msa0473000:CDS
TGAAAGATAATGATGAATTG+GGG 0.693897 3_3:+75492388 None:intergenic
AGCTTTGATCAAGTAAATGG+GGG 0.695560 3_3:-75490673 Msa0473000:CDS
TATCGTGTAGGTTAGAAGAG+GGG 0.696069 3_3:-75492628 Msa0473000:intron
TTGTGAATACCCCAATAGTG+GGG 0.696105 3_3:-75493845 Msa0473000:CDS
GAAGAGTTTCCAGCTCGTCG+AGG 0.699537 3_3:+75490571 None:intergenic
ATACTATGGCAAATCCTAGG+GGG 0.718473 3_3:-75493399 Msa0473000:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TGTTTTTAAATAAATTTTAC+TGG + chr3_3:75490995-75491014 None:intergenic 10.0%
!! ATTTATTTAAAAACACGAAT+TGG - chr3_3:75491000-75491019 Msa0473000:intron 15.0%
!! TTTATTTAAAAACACGAATT+GGG - chr3_3:75491001-75491020 Msa0473000:intron 15.0%
!! CATATATATGAAGTAAATAA+TGG + chr3_3:75491410-75491429 None:intergenic 15.0%
!!! TATTTTCATATCTATATATG+AGG - chr3_3:75492856-75492875 Msa0473000:intron 15.0%
!! CAAATTATGATAATAATTTC+AGG + chr3_3:75493586-75493605 None:intergenic 15.0%
!! CTGAAATTATTATCATAATT+TGG - chr3_3:75493584-75493603 Msa0473000:CDS 15.0%
!!! ATTTAATTTTTGAAAGAACA+GGG + chr3_3:75494374-75494393 None:intergenic 15.0%
!! GACAAATATTAATAAGTTAA+TGG - chr3_3:75494606-75494625 Msa0473000:intron 15.0%
!! GACAAATATTAATAAGTTAA+TGG - chr3_3:75494606-75494625 Msa0473000:intron 15.0%
!! AATCTTGACATTTATAATTA+TGG - chr3_3:75494846-75494865 Msa0473000:intron 15.0%
!!! ATCTGAAATATATTATTTTG+AGG + chr3_3:75495071-75495090 None:intergenic 15.0%
!! AAAGAAAATCAAAATTGAAA+AGG - chr3_3:75495493-75495512 Msa0473000:five_prime_UTR 15.0%
!! ATAAAAAACAAAATTGCGAT+GGG + chr3_3:75490556-75490575 None:intergenic 20.0%
!! TATAAAAAACAAAATTGCGA+TGG + chr3_3:75490557-75490576 None:intergenic 20.0%
!! AATGTAAAAAAATGTGATTG+AGG + chr3_3:75490786-75490805 None:intergenic 20.0%
!!! AAATAAATTTTACTGGCTTA+CGG + chr3_3:75490988-75491007 None:intergenic 20.0%
!!! ATTATTTCCAACAATTTTTG+TGG + chr3_3:75491039-75491058 None:intergenic 20.0%
!! TTTACAAACTCAAATTATAC+AGG + chr3_3:75491498-75491517 None:intergenic 20.0%
!! ATACACACACATATTTATAA+TGG - chr3_3:75491594-75491613 Msa0473000:intron 20.0%
!! CAATTCAAATTTCATAAGTT+TGG + chr3_3:75491680-75491699 None:intergenic 20.0%
!! ATATTTCCAAATTCAATGAT+CGG - chr3_3:75492039-75492058 Msa0473000:intron 20.0%
!! GATATATGTTTATAACTTCA+TGG - chr3_3:75492464-75492483 Msa0473000:CDS 20.0%
!! GATATGAAAATAAAAAACCT+GGG + chr3_3:75492848-75492867 None:intergenic 20.0%
!! AGATATGAAAATAAAAAACC+TGG + chr3_3:75492849-75492868 None:intergenic 20.0%
!!! TTGTGAATTTTTTTATTGTG+TGG - chr3_3:75493007-75493026 Msa0473000:intron 20.0%
!! ATGAAAGATAATGATGAATT+GGG + chr3_3:75493526-75493545 None:intergenic 20.0%
!! ACCTAAAAACTATCTAAAAA+CGG + chr3_3:75493686-75493705 None:intergenic 20.0%
!! ACATAAAAAAGATCAAAAGT+AGG - chr3_3:75493811-75493830 Msa0473000:CDS 20.0%
!! CATAAAAAAGATCAAAAGTA+GGG - chr3_3:75493812-75493831 Msa0473000:CDS 20.0%
!!! TGTTTGTTTTATCATTCTTT+TGG - chr3_3:75493970-75493989 Msa0473000:intron 20.0%
!!! CATTCTGAACTAAAATATTT+TGG + chr3_3:75494211-75494230 None:intergenic 20.0%
!!! CAAAATATTTTAGTTCAGAA+TGG - chr3_3:75494209-75494228 Msa0473000:intron 20.0%
!!! TTTAATTTTTGAAAGAACAG+GGG + chr3_3:75494373-75494392 None:intergenic 20.0%
!!! GATTTAATTTTTGAAAGAAC+AGG + chr3_3:75494375-75494394 None:intergenic 20.0%
!! CTTTCAAAAATTAAATCCTT+AGG - chr3_3:75494378-75494397 Msa0473000:intron 20.0%
!! TTTGAAAATGTAAAAACCTA+AGG + chr3_3:75494397-75494416 None:intergenic 20.0%
!!! TACATTTTCAAATAATGTTG+AGG - chr3_3:75494405-75494424 Msa0473000:intron 20.0%
!!! CTATTGAAATTATTGGTTTA+TGG - chr3_3:75494453-75494472 Msa0473000:intron 20.0%
!!! TAGAATACAATTTTACAATC+CGG - chr3_3:75494513-75494532 Msa0473000:intron 20.0%
!! AAAAATATCACATGATTCAA+TGG + chr3_3:75494539-75494558 None:intergenic 20.0%
!!! TTTGTTTGAAAGTATATTGT+TGG - chr3_3:75494806-75494825 Msa0473000:intron 20.0%
!!! AAGTTTTAATAGTTATTCAG+CGG - chr3_3:75494881-75494900 Msa0473000:intron 20.0%
!! CTAAAATGTTAAATTAAGCA+CGG - chr3_3:75495291-75495310 Msa0473000:intron 20.0%
!! TAAAATGTTAAATTAAGCAC+GGG - chr3_3:75495292-75495311 Msa0473000:intron 20.0%
!! TATTTCGTTTGTAAATATTG+TGG - chr3_3:75495469-75495488 Msa0473000:intron 20.0%
!!! GTCTTCTGTTTAATTTTTGT+CGG + chr3_3:75490282-75490301 None:intergenic 25.0%
! TTCGTCATTTCATTATATGT+TGG + chr3_3:75490313-75490332 None:intergenic 25.0%
! AAGAAGAAGAAGAAGAATTA+GGG + chr3_3:75490414-75490433 None:intergenic 25.0%
! AATCTTTAACAAAGAAAACG+AGG + chr3_3:75490609-75490628 None:intergenic 25.0%
! CAACATAGAAAAAAGCAAAA+AGG + chr3_3:75490640-75490659 None:intergenic 25.0%
! AAAATTTATTGCTGGAAAGA+GGG - chr3_3:75490700-75490719 Msa0473000:intron 25.0%
! TGTGTGATACTTGTATAAAT+GGG - chr3_3:75490846-75490865 Msa0473000:intron 25.0%
! ATACTTGTATAAATGGGAAT+TGG - chr3_3:75490852-75490871 Msa0473000:intron 25.0%
! TTGAAAAAGTGGAGTAAAAT+TGG - chr3_3:75491170-75491189 Msa0473000:intron 25.0%
! TTAAGTAATGTTCAATAGCT+AGG - chr3_3:75491210-75491229 Msa0473000:intron 25.0%
! TAAGTAATGTTCAATAGCTA+GGG - chr3_3:75491211-75491230 Msa0473000:intron 25.0%
! AACAGAAAATGCATAGAATT+AGG - chr3_3:75491267-75491286 Msa0473000:intron 25.0%
! TACAGGATACATAAATTCAT+GGG - chr3_3:75491302-75491321 Msa0473000:intron 25.0%
!!! ACCCAATAAAGTTTTGATTT+GGG - chr3_3:75492341-75492360 Msa0473000:intron 25.0%
! TCCCAAATCAAAACTTTATT+GGG + chr3_3:75492345-75492364 None:intergenic 25.0%
! ATCCCAAATCAAAACTTTAT+TGG + chr3_3:75492346-75492365 None:intergenic 25.0%
! TCTTCATCAAATTGATACTA+TGG - chr3_3:75492497-75492516 Msa0473000:CDS 25.0%
! CCATAACAAATGTATTTGAA+TGG + chr3_3:75492554-75492573 None:intergenic 25.0%
!! CCATTCAAATACATTTGTTA+TGG - chr3_3:75492551-75492570 Msa0473000:CDS 25.0%
! GATTAGAATCTTCAATACAA+TGG - chr3_3:75492725-75492744 Msa0473000:intron 25.0%
! TGGAAAGTTCAACATATTAA+TGG + chr3_3:75492808-75492827 None:intergenic 25.0%
! AAAATAAAAAACCTGGGAAA+TGG + chr3_3:75492842-75492861 None:intergenic 25.0%
! TTTCATATCTATATATGAGG+TGG - chr3_3:75492859-75492878 Msa0473000:intron 25.0%
!! TGAAAATGTTTTACTTGACT+TGG + chr3_3:75492984-75493003 None:intergenic 25.0%
! TTTAAGAATGATCAAGAATC+AGG + chr3_3:75493039-75493058 None:intergenic 25.0%
!! ACAATTTTCTTTGCATCTTT+TGG - chr3_3:75493074-75493093 Msa0473000:intron 25.0%
!! GCTAAAACATTGTTATTGTA+AGG + chr3_3:75493106-75493125 None:intergenic 25.0%
! TGAAAGATAATGATGAATTG+GGG + chr3_3:75493525-75493544 None:intergenic 25.0%
! CATGAAAGATAATGATGAAT+TGG + chr3_3:75493527-75493546 None:intergenic 25.0%
! AAGTATTTGAATTGGTAAAC+TGG + chr3_3:75493632-75493651 None:intergenic 25.0%
!!! TTTTTAGGTCTTCATCATTT+AGG - chr3_3:75493697-75493716 Msa0473000:CDS 25.0%
!! TGCTCTATTAGATTTACTTT+TGG - chr3_3:75493869-75493888 Msa0473000:CDS 25.0%
!! AATCAATGATTTTGCACATT+AGG - chr3_3:75493945-75493964 Msa0473000:intron 25.0%
! TAGTAGAACCCATATATTTA+TGG - chr3_3:75494062-75494081 Msa0473000:intron 25.0%
! GAGAACATCCATAAATATAT+GGG + chr3_3:75494073-75494092 None:intergenic 25.0%
! AGAGAACATCCATAAATATA+TGG + chr3_3:75494074-75494093 None:intergenic 25.0%
!!! TTGTTAGCTTACTTTTAAGA+TGG - chr3_3:75494108-75494127 Msa0473000:intron 25.0%
!! GGAAAATTGCATGATATTTT+TGG - chr3_3:75494129-75494148 Msa0473000:intron 25.0%
!! ACAATGAATTTAGTGTTTTC+AGG + chr3_3:75494256-75494275 None:intergenic 25.0%
! TGAAAACACTAAATTCATTG+TGG - chr3_3:75494255-75494274 Msa0473000:intron 25.0%
!!! TTAATTTTTGAAAGAACAGG+GGG + chr3_3:75494372-75494391 None:intergenic 25.0%
! TTGCATGCTATTGAAATTAT+TGG - chr3_3:75494446-75494465 Msa0473000:intron 25.0%
! TAGATTCAAATGTCTCAATT+AGG + chr3_3:75494763-75494782 None:intergenic 25.0%
!! TTTGAAAGTATATTGTTGGA+TGG - chr3_3:75494810-75494829 Msa0473000:intron 25.0%
! TGAAAACAAATTACACATGT+GGG + chr3_3:75494928-75494947 None:intergenic 25.0%
! TTGAAAACAAATTACACATG+TGG + chr3_3:75494929-75494948 None:intergenic 25.0%
! GAAATTAATGTATCCTTTGT+AGG - chr3_3:75495099-75495118 Msa0473000:intron 25.0%
!!! TGTTTCTTTTTTTCCTACAA+AGG + chr3_3:75495115-75495134 None:intergenic 25.0%
! CAAAAAACAAGTTGTATGTA+AGG + chr3_3:75495198-75495217 None:intergenic 25.0%
!! CGTGCTTAATTTAACATTTT+AGG + chr3_3:75495293-75495312 None:intergenic 25.0%
!! TTCTGTTTAATTTTTGTCGG+AGG + chr3_3:75490279-75490298 None:intergenic 30.0%
TCATTATATGTTGGATTTCG+TGG + chr3_3:75490304-75490323 None:intergenic 30.0%
GAAGAAGAAGAAGAAGAATT+AGG + chr3_3:75490415-75490434 None:intergenic 30.0%
TATGTTGAAATTTCTGATCG+TGG - chr3_3:75490653-75490672 Msa0473000:CDS 30.0%
ATGTTGAAATTTCTGATCGT+GGG - chr3_3:75490654-75490673 Msa0473000:CDS 30.0%
CTGAAGTGAAAATTTATTGC+TGG - chr3_3:75490692-75490711 Msa0473000:intron 30.0%
GAAAATTTATTGCTGGAAAG+AGG - chr3_3:75490699-75490718 Msa0473000:intron 30.0%
ACTTACATAATGACATTGAC+AGG + chr3_3:75490819-75490838 None:intergenic 30.0%
CTGTGTGATACTTGTATAAA+TGG - chr3_3:75490845-75490864 Msa0473000:intron 30.0%
GGAAACAATGTTATCAATCA+TGG - chr3_3:75490873-75490892 Msa0473000:intron 30.0%
TCTGTACTAATGCACAATAA+CGG - chr3_3:75490925-75490944 Msa0473000:intron 30.0%
! CTCAAAGTATTAAGTGATGT+AGG + chr3_3:75491129-75491148 None:intergenic 30.0%
CTACATCACTTAATACTTTG+AGG - chr3_3:75491127-75491146 Msa0473000:intron 30.0%
!!! TCCACTTTTTCAAGCAATTA+TGG + chr3_3:75491163-75491182 None:intergenic 30.0%
TGGAGTAAAATTGGAATTGT+TGG - chr3_3:75491179-75491198 Msa0473000:intron 30.0%
AAGTAATGTTCAATAGCTAG+GGG - chr3_3:75491212-75491231 Msa0473000:intron 30.0%
AGAAAATGCATAGAATTAGG+AGG - chr3_3:75491270-75491289 Msa0473000:intron 30.0%
CTACAGGATACATAAATTCA+TGG - chr3_3:75491301-75491320 Msa0473000:intron 30.0%
CACAGTTAAATTCATTGGTA+GGG + chr3_3:75491343-75491362 None:intergenic 30.0%
!!! TTTTAATTTTCATTGCCTCG+TGG - chr3_3:75491374-75491393 Msa0473000:intron 30.0%
TTGAATTGCTAAACATCTTG+TGG - chr3_3:75491692-75491711 Msa0473000:CDS 30.0%
CTAACTCAAACAAGTGAAAA+GGG + chr3_3:75491737-75491756 None:intergenic 30.0%
ACTAACTCAAACAAGTGAAA+AGG + chr3_3:75491738-75491757 None:intergenic 30.0%
CAATTTCCGATCATTGAATT+TGG + chr3_3:75492048-75492067 None:intergenic 30.0%
CAAATCAAAACTTTATTGGG+TGG + chr3_3:75492342-75492361 None:intergenic 30.0%
!!! CACCCAATAAAGTTTTGATT+TGG - chr3_3:75492340-75492359 Msa0473000:intron 30.0%
AGAATCTTCAATACAATGGA+TGG - chr3_3:75492729-75492748 Msa0473000:intron 30.0%
GAATCTTCAATACAATGGAT+GGG - chr3_3:75492730-75492749 Msa0473000:intron 30.0%
GGGAAATGGAAAATATGAAA+TGG + chr3_3:75492828-75492847 None:intergenic 30.0%
! TTTCATATTTTCCATTTCCC+AGG - chr3_3:75492828-75492847 Msa0473000:intron 30.0%
! ATTTTCTTTGCATCTTTTGG+AGG - chr3_3:75493077-75493096 Msa0473000:intron 30.0%
AAGATCAAACTGAATCCTAT+TGG + chr3_3:75493222-75493241 None:intergenic 30.0%
GATTATTGAACACGAAAAGA+GGG + chr3_3:75493254-75493273 None:intergenic 30.0%
!! AATCGATTTTTCTATCGTGT+AGG - chr3_3:75493270-75493289 Msa0473000:CDS 30.0%
ATATATTCAACTTGAGAGTG+AGG - chr3_3:75493386-75493405 Msa0473000:CDS 30.0%
TATATTCAACTTGAGAGTGA+GGG - chr3_3:75493387-75493406 Msa0473000:CDS 30.0%
TCATCATTATCTTTCATGAG+AGG - chr3_3:75493529-75493548 Msa0473000:CDS 30.0%
!!! GCCGTTTTTAGATAGTTTTT+AGG - chr3_3:75493682-75493701 Msa0473000:CDS 30.0%
TCATCATTTAGGAAACTTGA+TGG - chr3_3:75493708-75493727 Msa0473000:CDS 30.0%
TTCATAAAAACAGGAGACTT+CGG + chr3_3:75493766-75493785 None:intergenic 30.0%
!! ATTTACTTTTGGATTTGTGC+AGG - chr3_3:75493880-75493899 Msa0473000:CDS 30.0%
!! TTTACTTTTGGATTTGTGCA+GGG - chr3_3:75493881-75493900 Msa0473000:CDS 30.0%
!!! TTTTGGTTTATGAGTTATCC+AGG - chr3_3:75493987-75494006 Msa0473000:intron 30.0%
GATGTTATTACATGCTTGAA+AGG + chr3_3:75494039-75494058 None:intergenic 30.0%
ATTGTTTCCAGAGAGAAAAT+AGG + chr3_3:75494176-75494195 None:intergenic 30.0%
ACTAAATTCATTGTGGCATT+TGG - chr3_3:75494262-75494281 Msa0473000:intron 30.0%
CTCTCTTCATTTAATGAACT+TGG - chr3_3:75495153-75495172 Msa0473000:intron 30.0%
AAGAGTTTATTGCTTTGTGT+TGG + chr3_3:75495387-75495406 None:intergenic 30.0%
! TATAACTTGCACTATCATGT+GGG - chr3_3:75495559-75495578 Msa0473000:five_prime_UTR 30.0%
CCATATATATTCATATGCAG+AGG + chr3_3:75495603-75495622 None:intergenic 30.0%
CCTCTGCATATGAATATATA+TGG - chr3_3:75495600-75495619 Msa0473000:five_prime_UTR 30.0%
! AGAGACAGGAATTTGGAATT+TGG - chr3_3:75490352-75490371 Msa0473000:three_prime_UTR 35.0%
GAAGAAGAAGAATTAGGGAT+CGG + chr3_3:75490409-75490428 None:intergenic 35.0%
! CTTTGACTGATTGATTTCCA+CGG - chr3_3:75490750-75490769 Msa0473000:intron 35.0%
AAAATGTGATTGAGGCAAGA+GGG + chr3_3:75490778-75490797 None:intergenic 35.0%
AAAAATGTGATTGAGGCAAG+AGG + chr3_3:75490779-75490798 None:intergenic 35.0%
CCTATAGTGTTATAGCTTAG+CGG + chr3_3:75490963-75490982 None:intergenic 35.0%
! GCATTGACCACAAAAATTGT+TGG - chr3_3:75491029-75491048 Msa0473000:intron 35.0%
GCCATAATTGCTTGAAAAAG+TGG - chr3_3:75491159-75491178 Msa0473000:intron 35.0%
! AATTGGAATTGTTGGCTGTT+AGG - chr3_3:75491187-75491206 Msa0473000:intron 35.0%
GCACAGTTAAATTCATTGGT+AGG + chr3_3:75491344-75491363 None:intergenic 35.0%
TGCAGCACAGTTAAATTCAT+TGG + chr3_3:75491348-75491367 None:intergenic 35.0%
TGTTATCTAGAGAATGAGAC+AGG - chr3_3:75491431-75491450 Msa0473000:intron 35.0%
TCTTCAACACATGAAATGAC+TGG - chr3_3:75491776-75491795 Msa0473000:intron 35.0%
! GCATTTTCTGCACTCAATAA+CGG + chr3_3:75491966-75491985 None:intergenic 35.0%
TTATTGAGTGCAGAAAATGC+TGG - chr3_3:75491966-75491985 Msa0473000:intron 35.0%
ACGAATTGATATGAGATGAG+GGG + chr3_3:75491999-75492018 None:intergenic 35.0%
GACGAATTGATATGAGATGA+GGG + chr3_3:75492000-75492019 None:intergenic 35.0%
AGACGAATTGATATGAGATG+AGG + chr3_3:75492001-75492020 None:intergenic 35.0%
AATTGTGAATACCCCAATAG+TGG - chr3_3:75492063-75492082 Msa0473000:intron 35.0%
ATTGTGAATACCCCAATAGT+GGG - chr3_3:75492064-75492083 Msa0473000:intron 35.0%
!! CTGATTTGTTCTCAGTTTCA+TGG - chr3_3:75492139-75492158 Msa0473000:intron 35.0%
AACCTTTCAAAGAGACTTTC+AGG - chr3_3:75492223-75492242 Msa0473000:intron 35.0%
TTCAGGCGTGATTTAAAAAG+TGG - chr3_3:75492240-75492259 Msa0473000:intron 35.0%
AACTTTATTGGGTGGATAGT+TGG + chr3_3:75492334-75492353 None:intergenic 35.0%
! ACATTTAGATCTGAAGTTCG+TGG - chr3_3:75492396-75492415 Msa0473000:CDS 35.0%
TTGATACTATGGCAAATCCT+AGG - chr3_3:75492508-75492527 Msa0473000:CDS 35.0%
TGATACTATGGCAAATCCTA+GGG - chr3_3:75492509-75492528 Msa0473000:CDS 35.0%
! TTTTACGCCTCAACATTCTT+GGG - chr3_3:75493162-75493181 Msa0473000:intron 35.0%
AAGTGGAACTTCTTTCCAAT+AGG - chr3_3:75493204-75493223 Msa0473000:CDS 35.0%
CGATTATTGAACACGAAAAG+AGG + chr3_3:75493255-75493274 None:intergenic 35.0%
GAATTCTGATGAAGTAGTAC+AGG + chr3_3:75493457-75493476 None:intergenic 35.0%
AGATAATGATGAATTGGGGT+TGG + chr3_3:75493521-75493540 None:intergenic 35.0%
GGTAAACTGGAAAAGATGAT+TGG + chr3_3:75493619-75493638 None:intergenic 35.0%
AGCTGGCTAAGTATTTGAAT+TGG + chr3_3:75493640-75493659 None:intergenic 35.0%
! TCATGTAAGATGATTTGTGC+AGG + chr3_3:75493925-75493944 None:intergenic 35.0%
ATCAAAGATGTAATGCTACC+TGG + chr3_3:75494008-75494027 None:intergenic 35.0%
! GTTCTTACCTATTTTCTCTC+TGG - chr3_3:75494166-75494185 Msa0473000:intron 35.0%
!! ATTTAGTGTTTTCAGGCAAG+TGG + chr3_3:75494249-75494268 None:intergenic 35.0%
!! TTATTGGTTTATGGTGATCC+AGG - chr3_3:75494462-75494481 Msa0473000:intron 35.0%
ATATCACATGATTCAATGGC+CGG + chr3_3:75494535-75494554 None:intergenic 35.0%
TTAAGCTGTATGTCTACAGT+TGG + chr3_3:75494706-75494725 None:intergenic 35.0%
ACAAGTTGTATGTAAGGATG+AGG + chr3_3:75495192-75495211 None:intergenic 35.0%
! TGCAGCTTTGATCAAGTAAA+TGG - chr3_3:75495234-75495253 Msa0473000:intron 35.0%
! GCAGCTTTGATCAAGTAAAT+GGG - chr3_3:75495235-75495254 Msa0473000:intron 35.0%
! CAGCTTTGATCAAGTAAATG+GGG - chr3_3:75495236-75495255 Msa0473000:intron 35.0%
! AGCTTTGATCAAGTAAATGG+GGG - chr3_3:75495237-75495256 Msa0473000:intron 35.0%
GGAGACATCATATTTACATG+TGG + chr3_3:75495366-75495385 None:intergenic 35.0%
GGGAATCATGTTTACATACA+AGG + chr3_3:75495412-75495431 None:intergenic 35.0%
! GTATAACTTGCACTATCATG+TGG - chr3_3:75495558-75495577 Msa0473000:five_prime_UTR 35.0%
TTCTTCTTCTTCTTCATCCC+TGG - chr3_3:75490420-75490439 Msa0473000:three_prime_UTR 40.0%
AGAAAACGAGGAAATGAAGC+AGG + chr3_3:75490597-75490616 None:intergenic 40.0%
CCGCTAAGCTATAACACTAT+AGG - chr3_3:75490960-75490979 Msa0473000:intron 40.0%
! TAATTTTCATTGCCTCGTGG+AGG - chr3_3:75491377-75491396 Msa0473000:intron 40.0%
TCTAGAGAATGAGACAGGAA+AGG - chr3_3:75491436-75491455 Msa0473000:intron 40.0%
GAAAAGGGATTCAACAGGAA+TGG + chr3_3:75491722-75491741 None:intergenic 40.0%
CAAGTGAAAAGGGATTCAAC+AGG + chr3_3:75491727-75491746 None:intergenic 40.0%
AATGTTCCATTAACAGTGCC+TGG - chr3_3:75491808-75491827 Msa0473000:intron 40.0%
! AATAACGGTGAAGTGTCAGA+AGG + chr3_3:75491951-75491970 None:intergenic 40.0%
CGAATTGATATGAGATGAGG+GGG + chr3_3:75491998-75492017 None:intergenic 40.0%
TCGTCTGTTTCAACATCTCA+AGG - chr3_3:75492015-75492034 Msa0473000:intron 40.0%
TTGTGAATACCCCAATAGTG+GGG - chr3_3:75492065-75492084 Msa0473000:intron 40.0%
GTTCTCAGTTTCATGGAATC+AGG - chr3_3:75492146-75492165 Msa0473000:intron 40.0%
GTTTCATGGAATCAGGACTA+CGG - chr3_3:75492153-75492172 Msa0473000:intron 40.0%
AGGCGTGATTTAAAAAGTGG+CGG - chr3_3:75492243-75492262 Msa0473000:intron 40.0%
GATACTATGGCAAATCCTAG+GGG - chr3_3:75492510-75492529 Msa0473000:CDS 40.0%
ATACTATGGCAAATCCTAGG+GGG - chr3_3:75492511-75492530 Msa0473000:CDS 40.0%
!! ACATTTGTTATGGCTTGTCC+AGG - chr3_3:75492561-75492580 Msa0473000:CDS 40.0%
!! GAAGTTCGAGTTGAACACTT+TGG - chr3_3:75492597-75492616 Msa0473000:CDS 40.0%
GCATGCAATTTGGGAATCAT+GGG + chr3_3:75492649-75492668 None:intergenic 40.0%
AGCATGCAATTTGGGAATCA+TGG + chr3_3:75492650-75492669 None:intergenic 40.0%
CAGAGTGAAGCATGCAATTT+GGG + chr3_3:75492658-75492677 None:intergenic 40.0%
TCAGAGTGAAGCATGCAATT+TGG + chr3_3:75492659-75492678 None:intergenic 40.0%
! CTTTTACGCCTCAACATTCT+TGG - chr3_3:75493161-75493180 Msa0473000:intron 40.0%
TTCCACTTCCAAAACTATCG+TGG + chr3_3:75493192-75493211 None:intergenic 40.0%
TCTATCGTGTAGGTTAGAAG+AGG - chr3_3:75493280-75493299 Msa0473000:CDS 40.0%
CTATCGTGTAGGTTAGAAGA+GGG - chr3_3:75493281-75493300 Msa0473000:CDS 40.0%
TATCGTGTAGGTTAGAAGAG+GGG - chr3_3:75493282-75493301 Msa0473000:CDS 40.0%
CCGGTATTTGGAGAAATCAA+GGG + chr3_3:75493496-75493515 None:intergenic 40.0%
CCCTTGATTTCTCCAAATAC+CGG - chr3_3:75493493-75493512 Msa0473000:CDS 40.0%
ACCGGTATTTGGAGAAATCA+AGG + chr3_3:75493497-75493516 None:intergenic 40.0%
TTCAAATACTTAGCCAGCTC+AGG - chr3_3:75493641-75493660 Msa0473000:CDS 40.0%
TCAAATACTTAGCCAGCTCA+GGG - chr3_3:75493642-75493661 Msa0473000:CDS 40.0%
CCAGCACAGTTCATAAAAAC+AGG + chr3_3:75493775-75493794 None:intergenic 40.0%
!!! CCTGTTTTTATGAACTGTGC+TGG - chr3_3:75493772-75493791 Msa0473000:CDS 40.0%
! TTTCTCTCTGGAAACAATGC+AGG - chr3_3:75494178-75494197 Msa0473000:intron 40.0%
! TTCTCTCTGGAAACAATGCA+GGG - chr3_3:75494179-75494198 Msa0473000:intron 40.0%
GTAGCTTGATTGCGAGTTAA+GGG + chr3_3:75494741-75494760 None:intergenic 40.0%
AACAATCCTCCAACTGAGAT+GGG + chr3_3:75495434-75495453 None:intergenic 40.0%
TGAGAAACAGAGAGAGAGAC+AGG - chr3_3:75490338-75490357 Msa0473000:three_prime_UTR 45.0%
CAGAGAGAGAGACAGGAATT+TGG - chr3_3:75490345-75490364 Msa0473000:three_prime_UTR 45.0%
GATCGGAATGCAAAACGTGA+AGG + chr3_3:75490392-75490411 None:intergenic 45.0%
GGGAAAGAGTCAAAGAGGAA+AGG + chr3_3:75490536-75490555 None:intergenic 45.0%
TGTTCAATAGCTAGGGGTTC+TGG - chr3_3:75491218-75491237 Msa0473000:intron 45.0%
TTAGGAGGAGTTGCAACTAC+AGG - chr3_3:75491285-75491304 Msa0473000:intron 45.0%
!! AATGGATTGTTTCCTCCACG+AGG + chr3_3:75491392-75491411 None:intergenic 45.0%
GCTGCAGAAGTAGTACAAAG+CGG - chr3_3:75491464-75491483 Msa0473000:intron 45.0%
CTGCAGAAGTAGTACAAAGC+GGG - chr3_3:75491465-75491484 Msa0473000:intron 45.0%
! GAATTGCCAGGCACTGTTAA+TGG + chr3_3:75491817-75491836 None:intergenic 45.0%
CTGTCATTGATGTCTGCATC+TGG + chr3_3:75492111-75492130 None:intergenic 45.0%
TTAGCTGCTGGAACAAGTCA+TGG - chr3_3:75492180-75492199 Msa0473000:intron 45.0%
CGCCTGAAAGTCTCTTTGAA+AGG + chr3_3:75492228-75492247 None:intergenic 45.0%
! TTTGGGATGATCATCAGAGC+AGG - chr3_3:75492358-75492377 Msa0473000:intron 45.0%
TGCATGCTTCACTCTGACAA+CGG - chr3_3:75492662-75492681 Msa0473000:intron 45.0%
TCTCACTAGCAGTTGCAAGA+AGG + chr3_3:75492695-75492714 None:intergenic 45.0%
TCTTGCAACTGCTAGTGAGA+AGG - chr3_3:75492695-75492714 Msa0473000:intron 45.0%
CTTGCAACTGCTAGTGAGAA+GGG - chr3_3:75492696-75492715 Msa0473000:intron 45.0%
GGGTCTCGTTTACAAGAAGT+AGG - chr3_3:75492750-75492769 Msa0473000:intron 45.0%
TGGACAACCCAAGAATGTTG+AGG + chr3_3:75493172-75493191 None:intergenic 45.0%
! TGGGTTGTCCACGATAGTTT+TGG - chr3_3:75493181-75493200 Msa0473000:CDS 45.0%
!!! GTCCACGATAGTTTTGGAAG+TGG - chr3_3:75493187-75493206 Msa0473000:CDS 45.0%
TTGGCAGCATCAAGTGACAA+AGG - chr3_3:75493355-75493374 Msa0473000:CDS 45.0%
!! AACTTGAGAGTGAGGGTGTT+TGG - chr3_3:75493394-75493413 Msa0473000:CDS 45.0%
!! ACTTGAGAGTGAGGGTGTTT+GGG - chr3_3:75493395-75493414 Msa0473000:CDS 45.0%
TCAGGTGCTCTGCATTACAA+AGG + chr3_3:75493568-75493587 None:intergenic 45.0%
CATAATATAGCTCCCTGAGC+TGG + chr3_3:75493657-75493676 None:intergenic 45.0%
! TCTCTCTGGAAACAATGCAG+GGG - chr3_3:75494180-75494199 Msa0473000:intron 45.0%
CAGAACACTGTCCTAATCTC+TGG - chr3_3:75494289-75494308 Msa0473000:intron 45.0%
TTCCATCCATGCCAGAGATT+AGG + chr3_3:75494303-75494322 None:intergenic 45.0%
TAATCTCTGGCATGGATGGA+AGG - chr3_3:75494302-75494321 Msa0473000:intron 45.0%
TCAATTATACAAGCCCAGCC+TGG + chr3_3:75494483-75494502 None:intergenic 45.0%
GGTAGCTTGATTGCGAGTTA+AGG + chr3_3:75494742-75494761 None:intergenic 45.0%
ACAATCCTCCAACTGAGATG+GGG + chr3_3:75495433-75495452 None:intergenic 45.0%
CAACAATCCTCCAACTGAGA+TGG + chr3_3:75495435-75495454 None:intergenic 45.0%
CATCTCAGTTGGAGGATTGT+TGG - chr3_3:75495433-75495452 Msa0473000:intron 45.0%
! CTTCTTCATCCCTGGTAACG+CGG - chr3_3:75490428-75490447 Msa0473000:three_prime_UTR 50.0%
TTGCGTAAACCGCGTTACCA+GGG + chr3_3:75490440-75490459 None:intergenic 50.0%
ATTGCGTAAACCGCGTTACC+AGG + chr3_3:75490441-75490460 None:intergenic 50.0%
GCGATGGGAAAGAGTCAAAG+AGG + chr3_3:75490541-75490560 None:intergenic 50.0%
! TCAATAGCTAGGGGTTCTGG+TGG - chr3_3:75491221-75491240 Msa0473000:intron 50.0%
! ATGCTTGCTTGTTGCAGCCT+GGG + chr3_3:75491859-75491878 None:intergenic 50.0%
AAGATGAGGCCCCACTATTG+GGG + chr3_3:75492077-75492096 None:intergenic 50.0%
GAAGATGAGGCCCCACTATT+GGG + chr3_3:75492078-75492097 None:intergenic 50.0%
AGAAGATGAGGCCCCACTAT+TGG + chr3_3:75492079-75492098 None:intergenic 50.0%
ATTGATGTCTGCATCTGGCC+GGG + chr3_3:75492106-75492125 None:intergenic 50.0%
CATTGATGTCTGCATCTGGC+CGG + chr3_3:75492107-75492126 None:intergenic 50.0%
CAAGCGCTAGGATGTTGCTA+CGG + chr3_3:75492293-75492312 None:intergenic 50.0%
AGCAACATCCTAGCGCTTGT+TGG - chr3_3:75492294-75492313 Msa0473000:intron 50.0%
GATCATCAGAGCAGGTGCAT+TGG - chr3_3:75492366-75492385 Msa0473000:intron 50.0%
ACTTCTCCTTTGTGACGACC+TGG + chr3_3:75492582-75492601 None:intergenic 50.0%
TGCTTCACTCTGACAACGGA+CGG - chr3_3:75492666-75492685 Msa0473000:intron 50.0%
AGGTTAGAAGAGGGGTGGAT+AGG - chr3_3:75493290-75493309 Msa0473000:CDS 50.0%
GGTTAGAAGAGGGGTGGATA+GGG - chr3_3:75493291-75493310 Msa0473000:CDS 50.0%
!! CTTGAGAGTGAGGGTGTTTG+GGG - chr3_3:75493396-75493415 Msa0473000:CDS 50.0%
GATGAAGTAGTACAGGCCCT+TGG + chr3_3:75493450-75493469 None:intergenic 50.0%
! TGATGAATTGGGGTTGGCAC+CGG + chr3_3:75493515-75493534 None:intergenic 50.0%
CACTGTCCTAATCTCTGGCA+TGG - chr3_3:75494294-75494313 Msa0473000:intron 50.0%
GTCCTAATCTCTGGCATGGA+TGG - chr3_3:75494298-75494317 Msa0473000:intron 50.0%
TGGTTTATGGTGATCCAGGC+TGG - chr3_3:75494466-75494485 Msa0473000:intron 50.0%
GGTTTATGGTGATCCAGGCT+GGG - chr3_3:75494467-75494486 Msa0473000:intron 50.0%
TCAACTGCAAAGCATGCGTG+AGG + chr3_3:75495026-75495045 None:intergenic 50.0%
CATGATTCCCCCATCTCAGT+TGG - chr3_3:75495422-75495441 Msa0473000:intron 50.0%
CAATCCTCCAACTGAGATGG+GGG + chr3_3:75495432-75495451 None:intergenic 50.0%
!! ATTGAGGCAAGAGGGTACCG+TGG + chr3_3:75490770-75490789 None:intergenic 55.0%
! AGGGGTTCTGGTGGTAGTAG+TGG - chr3_3:75491230-75491249 Msa0473000:intron 55.0%
AGTAGCAGGAGGGAATTGCC+AGG + chr3_3:75491829-75491848 None:intergenic 55.0%
GGGGGATGAAAGTAGCAGGA+GGG + chr3_3:75491839-75491858 None:intergenic 55.0%
TGGGGGATGAAAGTAGCAGG+AGG + chr3_3:75491840-75491859 None:intergenic 55.0%
!! TCCTGCTACTTTCATCCCCC+AGG - chr3_3:75491839-75491858 Msa0473000:intron 55.0%
! TGCTTGCTTGTTGCAGCCTG+GGG + chr3_3:75491858-75491877 None:intergenic 55.0%
! CATGCTTGCTTGTTGCAGCC+TGG + chr3_3:75491860-75491879 None:intergenic 55.0%
GGGCCTCATCTTCTCTTTCC+CGG - chr3_3:75492085-75492104 Msa0473000:intron 55.0%
TGGCCGGGAAAGAGAAGATG+AGG + chr3_3:75492091-75492110 None:intergenic 55.0%
GACTACGGTTGCTTAGCTGC+TGG - chr3_3:75492168-75492187 Msa0473000:intron 55.0%
CTACAGCACCAACAAGCGCT+AGG + chr3_3:75492305-75492324 None:intergenic 55.0%
GAAAGACAGCACAACCCCCT+AGG + chr3_3:75492528-75492547 None:intergenic 55.0%
GCTTGTCCAGGTCGTCACAA+AGG - chr3_3:75492573-75492592 Msa0473000:CDS 55.0%
GCTTCACTCTGACAACGGAC+GGG - chr3_3:75492667-75492686 Msa0473000:intron 55.0%
CGTGTAGGTTAGAAGAGGGG+TGG - chr3_3:75493285-75493304 Msa0473000:CDS 55.0%
CTCTGTCTCCCAATGTCCAG+TGG - chr3_3:75493332-75493351 Msa0473000:CDS 55.0%
GTCTCCCAATGTCCAGTGGT+TGG - chr3_3:75493336-75493355 Msa0473000:CDS 55.0%
GCTGCCAACCACTGGACATT+GGG + chr3_3:75493343-75493362 None:intergenic 55.0%
TGCTGCCAACCACTGGACAT+TGG + chr3_3:75493344-75493363 None:intergenic 55.0%
CACTTGATGCTGCCAACCAC+TGG + chr3_3:75493351-75493370 None:intergenic 55.0%
ATACGCCCAACTGCTGTCCA+AGG - chr3_3:75493430-75493449 Msa0473000:CDS 55.0%
TACGCCCAACTGCTGTCCAA+GGG - chr3_3:75493431-75493450 Msa0473000:CDS 55.0%
!! TTGGGGTTGGCACCGGTATT+TGG + chr3_3:75493508-75493527 None:intergenic 55.0%
CTGCAAAGCATGCGTGAGGA+AGG + chr3_3:75495022-75495041 None:intergenic 55.0%
TGGGGGAGAGATGTTGCAGA+AGG - chr3_3:75495254-75495273 Msa0473000:intron 55.0%
ACTACAAGTCCTCGACGAGC+TGG - chr3_3:75495330-75495349 Msa0473000:intron 55.0%
GAAGAGTTTCCAGCTCGTCG+AGG + chr3_3:75495342-75495361 None:intergenic 55.0%
GATTCCCCCATCTCAGTTGG+AGG - chr3_3:75495425-75495444 Msa0473000:intron 55.0%
GCCTGGGGGATGAAAGTAGC+AGG + chr3_3:75491843-75491862 None:intergenic 60.0%
! GCTTGCTTGTTGCAGCCTGG+GGG + chr3_3:75491857-75491876 None:intergenic 60.0%
!! GAGAGTGAGGGTGTTTGGGG+AGG - chr3_3:75493399-75493418 Msa0473000:CDS 60.0%
CAGGCCCTTGGACAGCAGTT+GGG + chr3_3:75493438-75493457 None:intergenic 60.0%
ACAGGCCCTTGGACAGCAGT+TGG + chr3_3:75493439-75493458 None:intergenic 60.0%
CACTCAGCTGACGAGTCAGC+AGG + chr3_3:75494340-75494359 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr3_3 gene 75490270 75495662 75490270 ID=Msa0473000;Name=Msa0473000
chr3_3 mRNA 75490270 75495662 75490270 ID=Msa0473000-mRNA-1;Parent=Msa0473000;Name=Msa0473000-mRNA-1;_AED=0.01;_eAED=0.01;_QI=260|1|1|1|0.6|0.5|6|360|415
chr3_3 exon 75490270 75490708 75490270 ID=Msa0473000-mRNA-1:exon:19621;Parent=Msa0473000-mRNA-1
chr3_3 exon 75491609 75491732 75491609 ID=Msa0473000-mRNA-1:exon:19620;Parent=Msa0473000-mRNA-1
chr3_3 exon 75492382 75492640 75492382 ID=Msa0473000-mRNA-1:exon:19619;Parent=Msa0473000-mRNA-1
chr3_3 exon 75493165 75493953 75493165 ID=Msa0473000-mRNA-1:exon:19618;Parent=Msa0473000-mRNA-1
chr3_3 exon 75495161 75495245 75495161 ID=Msa0473000-mRNA-1:exon:19617;Parent=Msa0473000-mRNA-1
chr3_3 exon 75495491 75495662 75495491 ID=Msa0473000-mRNA-1:exon:19616;Parent=Msa0473000-mRNA-1
chr3_3 five_prime_UTR 75495491 75495662 75495491 ID=Msa0473000-mRNA-1:five_prime_utr;Parent=Msa0473000-mRNA-1
chr3_3 five_prime_UTR 75495161 75495245 75495161 ID=Msa0473000-mRNA-1:five_prime_utr;Parent=Msa0473000-mRNA-1
chr3_3 five_prime_UTR 75493951 75493953 75493951 ID=Msa0473000-mRNA-1:five_prime_utr;Parent=Msa0473000-mRNA-1
chr3_3 CDS 75493165 75493950 75493165 ID=Msa0473000-mRNA-1:cds;Parent=Msa0473000-mRNA-1
chr3_3 CDS 75492382 75492640 75492382 ID=Msa0473000-mRNA-1:cds;Parent=Msa0473000-mRNA-1
chr3_3 CDS 75491609 75491732 75491609 ID=Msa0473000-mRNA-1:cds;Parent=Msa0473000-mRNA-1
chr3_3 CDS 75490630 75490708 75490630 ID=Msa0473000-mRNA-1:cds;Parent=Msa0473000-mRNA-1
chr3_3 three_prime_UTR 75490270 75490629 75490270 ID=Msa0473000-mRNA-1:three_prime_utr;Parent=Msa0473000-mRNA-1
Gene Sequence

>Msa0473000

ATGCTGGCAGATTCCCCCTCATCTCATATCAATTCGTCTGTTTCAACATCTCAAGGAATATTTCCAAATTCAATGATCGGAAATTGTGAATACCCCAATAGTGGGGCCTCATCTTCTCTTTCCCGGCCAGATGCAGACATCAATGACAGTGATGAATCTGATTTGTTCTCAGTTTCATGGAATCAGGACTACGGTTGCTTAGCTGCTGGAACAAGTCATGGTTTTCGTATATATAATTGTGAACCTTTCAAAGAGACTTTCAGGCGTGATTTAAAAAGTGGCGGTTTTAAAATTGTAGAGATGCTGTTCCGTAGCAACATCCTAGCGCTTGTTGGTGCTGTAGCAAATTCCAACTATCCACCCAATAAAGTTTTGATTTGGGATGATCATCAGAGCAGGTGCATTGGTGAATTCACATTTAGATCTGAAGTTCGTGGAGTGAAATTAAGACGTGATCGAATTGTAGTTGTTCTTGAGCACAAGATATATGTTTATAACTTCATGGATTTGAAGCTTCTTCATCAAATTGATACTATGGCAAATCCTAGGGGGTTGTGCTGTCTTTCACACCATTCAAATACATTTGTTATGGCTTGTCCAGGTCGTCACAAAGGAGAAGTTCGAGTTGAACACTTTGGACTGAATGTCACAAAATTTATCAATGCCCATGATTCCCAAATTGCATGCTTCACTCTGACAACGGACGGGCTCCTTCTTGCAACTGCTAGTGAGAAGGGCACTCTGATTAGAATCTTCAATACAATGGATGGGTCTCGTTTACAAGAAGTTAGAAGAGGGGTGGATAGGGCTGAAATCAACAGTATAGCTCTGTCTCCCAATGTCCAGTGGTTGGCAGCATCAAGTGACAAAGGCACTGTTCATATATTCAACTTGAGAGTGAGGGTGTTTGGGGAGGATAGTGTAATACGCCCAACTGCTGTCCAAGGGCCTGTACTACTTCATCAGAATTCTTCAACTGCTTTAGATCCCTTGATTTCTCCAAATACCGGTGCCAACCCCAATTCATCATTATCTTTCATGAGAGGGGTTTTACCAAAATATTTTAGTTCAGAATGGTCATTTGCACAGTTCCACTTGCCTGAAAACACTAAATTCATTGTGGCATTTGGATCACAGAACACTGTCCTAATCTCTGGCATGGATGGAAGCTTTTACAAATGCAGCTTTGATCAAGTAAATGGGGGAGAGATGTTGCAGAAGGAGTATGTTCGCTTCCTAAAATGTTAA

Protein sequence

>Msa0473000

MLADSPSSHINSSVSTSQGIFPNSMIGNCEYPNSGASSSLSRPDADINDSDESDLFSVSWNQDYGCLAAGTSHGFRIYNCEPFKETFRRDLKSGGFKIVEMLFRSNILALVGAVANSNYPPNKVLIWDDHQSRCIGEFTFRSEVRGVKLRRDRIVVVLEHKIYVYNFMDLKLLHQIDTMANPRGLCCLSHHSNTFVMACPGRHKGEVRVEHFGLNVTKFINAHDSQIACFTLTTDGLLLATASEKGTLIRIFNTMDGSRLQEVRRGVDRAEINSIALSPNVQWLAASSDKGTVHIFNLRVRVFGEDSVIRPTAVQGPVLLHQNSSTALDPLISPNTGANPNSSLSFMRGVLPKYFSSEWSFAQFHLPENTKFIVAFGSQNTVLISGMDGSFYKCSFDQVNGGEMLQKEYVRFLKC*