AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1393730


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1393730 MtrunA17_Chr3g0128501 97.831 415 9 0 1 415 1 415 0.0 850
Msa1393730 MtrunA17_Chr1g0192081 58.313 403 138 7 16 414 4 380 6.92e-159 452
Msa1393730 MtrunA17_Chr1g0195841 51.811 359 171 2 57 414 5 362 7.21e-128 373
Msa1393730 MtrunA17_Chr7g0269031 55.155 194 69 5 223 413 141 319 4.79e-54 182
Msa1393730 MtrunA17_Chr7g0269031 35.096 208 106 5 60 254 71 262 6.44e-29 115
Msa1393730 MtrunA17_Chr4g0073441 34.317 271 165 5 55 314 15 283 1.10e-42 153
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1393730 AT3G56440.1 74.227 388 89 2 27 414 10 386 0.0 597
Msa1393730 AT2G40810.1 71.675 406 96 3 10 414 1 388 0.0 596
Msa1393730 AT2G40810.2 71.675 406 96 3 10 414 1 388 0.0 596
Msa1393730 AT3G56440.2 74.656 363 81 2 27 389 10 361 0.0 561
Msa1393730 AT3G56440.3 75.232 323 69 2 27 349 10 321 2.61e-177 498
Msa1393730 AT3G62770.1 57.323 396 145 5 23 414 45 420 1.35e-152 439
Msa1393730 AT3G62770.3 56.604 371 137 5 23 389 45 395 9.08e-140 405
Msa1393730 AT5G05150.1 47.666 407 164 5 10 413 1 361 7.03e-125 366
Msa1393730 AT2G40810.3 73.529 170 42 1 245 414 97 263 1.94e-82 254
Msa1393730 AT2G40810.3 53.333 120 40 2 10 128 1 105 9.43e-32 122
Msa1393730 AT4G30510.1 32.509 283 181 6 53 330 9 286 3.90e-38 141
Msa1393730 AT4G30510.2 32.766 235 150 5 101 330 1 232 3.02e-30 119

Find 136 sgRNAs with CRISPR-Local

Find 334 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAATTTCCGATCATTGAATT+TGG 0.146013 tig0021758:-25647 None:intergenic
CATTCTGAACTAAAATATTT+TGG 0.153937 tig0021758:-27810 None:intergenic
ATCCCAAATCAAAACTTTAT+TGG 0.177425 tig0021758:-25945 None:intergenic
TTGGGGTTGGCACCGGTATT+TGG 0.187638 tig0021758:-27107 None:intergenic
AACCTTTCAAAGAGACTTTC+AGG 0.219715 tig0021758:+25825 Msa1393730:CDS
TGCAGCTTTGATCAAGTAAA+TGG 0.230085 tig0021758:+28836 Msa1393730:CDS
AGAGACAGGAATTTGGAATT+TGG 0.237749 tig0021758:+23954 Msa1393730:five_prime_UTR
CTGATTTGTTCTCAGTTTCA+TGG 0.238417 tig0021758:+25741 Msa1393730:CDS
CAGAGAGAGAGACAGGAATT+TGG 0.240091 tig0021758:+23947 Msa1393730:five_prime_UTR
ACTAAATTCATTGTGGCATT+TGG 0.273806 tig0021758:+27864 Msa1393730:CDS
AACTTGAGAGTGAGGGTGTT+TGG 0.279915 tig0021758:+26996 Msa1393730:CDS
TCTTCATCAAATTGATACTA+TGG 0.283426 tig0021758:+26099 Msa1393730:CDS
TCAGAGTGAAGCATGCAATT+TGG 0.287147 tig0021758:-26258 None:intergenic
TCCCAAATCAAAACTTTATT+GGG 0.292270 tig0021758:-25944 None:intergenic
CATGAAAGATAATGATGAAT+TGG 0.295519 tig0021758:-27126 None:intergenic
GATATATGTTTATAACTTCA+TGG 0.302452 tig0021758:+26066 Msa1393730:CDS
ACTTGAGAGTGAGGGTGTTT+GGG 0.303097 tig0021758:+26997 Msa1393730:CDS
CAGAGTGAAGCATGCAATTT+GGG 0.308247 tig0021758:-26257 None:intergenic
GTTCTCAGTTTCATGGAATC+AGG 0.310536 tig0021758:+25748 Msa1393730:CDS
CCATTCAAATACATTTGTTA+TGG 0.324119 tig0021758:+26153 Msa1393730:CDS
CCTCTGCATATGAATATATA+TGG 0.330625 tig0021758:+29202 Msa1393730:three_prime_UTR
AACTTTATTGGGTGGATAGT+TGG 0.360324 tig0021758:-25933 None:intergenic
ATGAAAGATAATGATGAATT+GGG 0.360564 tig0021758:-27125 None:intergenic
GAAAATTTATTGCTGGAAAG+AGG 0.362639 tig0021758:+24301 Msa1393730:five_prime_UTR
GAAGATGAGGCCCCACTATT+GGG 0.364649 tig0021758:-25677 None:intergenic
AGAAGATGAGGCCCCACTAT+TGG 0.366717 tig0021758:-25678 None:intergenic
GGGCCTCATCTTCTCTTTCC+CGG 0.370929 tig0021758:+25687 Msa1393730:CDS
CTGAAGTGAAAATTTATTGC+TGG 0.391736 tig0021758:+24294 Msa1393730:five_prime_UTR
TCATTATATGTTGGATTTCG+TGG 0.394623 tig0021758:-23903 None:intergenic
AGCATGCAATTTGGGAATCA+TGG 0.405618 tig0021758:-26249 None:intergenic
GGTTAGAAGAGGGGTGGATA+GGG 0.417025 tig0021758:+26893 Msa1393730:intron
CATCTCAGTTGGAGGATTGT+TGG 0.424111 tig0021758:+29035 Msa1393730:three_prime_UTR
CACTTGATGCTGCCAACCAC+TGG 0.429688 tig0021758:-26950 None:intergenic
TTGATACTATGGCAAATCCT+AGG 0.431047 tig0021758:+26110 Msa1393730:CDS
GCAGCTTTGATCAAGTAAAT+GGG 0.450799 tig0021758:+28837 Msa1393730:CDS
CTGTCATTGATGTCTGCATC+TGG 0.455833 tig0021758:-25710 None:intergenic
AAGAGTTTATTGCTTTGTGT+TGG 0.456916 tig0021758:-28986 None:intergenic
AGGTTAGAAGAGGGGTGGAT+AGG 0.457915 tig0021758:+26892 Msa1393730:intron
AATTGTGAATACCCCAATAG+TGG 0.458125 tig0021758:+25665 Msa1393730:CDS
TTCGTCATTTCATTATATGT+TGG 0.458601 tig0021758:-23912 None:intergenic
AGAATCTTCAATACAATGGA+TGG 0.459968 tig0021758:+26331 Msa1393730:CDS
AACAATCCTCCAACTGAGAT+GGG 0.460394 tig0021758:-29033 None:intergenic
AAAATTTATTGCTGGAAAGA+GGG 0.469548 tig0021758:+24302 Msa1393730:five_prime_UTR
ACCGGTATTTGGAGAAATCA+AGG 0.473373 tig0021758:-27096 None:intergenic
AGCAACATCCTAGCGCTTGT+TGG 0.476042 tig0021758:+25896 Msa1393730:CDS
AAAGAAAATCAAAATTGAAA+AGG 0.477518 tig0021758:+29095 Msa1393730:three_prime_UTR
CAGGCCCTTGGACAGCAGTT+GGG 0.479532 tig0021758:-27037 None:intergenic
CATTGATGTCTGCATCTGGC+CGG 0.479957 tig0021758:-25706 None:intergenic
TATTTCGTTTGTAAATATTG+TGG 0.480557 tig0021758:+29071 Msa1393730:three_prime_UTR
TTCCATCCATGCCAGAGATT+AGG 0.483661 tig0021758:-27902 None:intergenic
TGAGAAACAGAGAGAGAGAC+AGG 0.486533 tig0021758:+23940 Msa1393730:five_prime_UTR
GCTGCCAACCACTGGACATT+GGG 0.488358 tig0021758:-26942 None:intergenic
GAAGTTCGAGTTGAACACTT+TGG 0.488765 tig0021758:+26199 Msa1393730:CDS
ACATTTGTTATGGCTTGTCC+AGG 0.490027 tig0021758:+26163 Msa1393730:CDS
TGATACTATGGCAAATCCTA+GGG 0.491747 tig0021758:+26111 Msa1393730:CDS
CCCTTGATTTCTCCAAATAC+CGG 0.496555 tig0021758:+27095 Msa1393730:CDS
GTCTCCCAATGTCCAGTGGT+TGG 0.498399 tig0021758:+26938 Msa1393730:CDS
ACATTTAGATCTGAAGTTCG+TGG 0.499114 tig0021758:+25998 Msa1393730:CDS
GTCCTAATCTCTGGCATGGA+TGG 0.500489 tig0021758:+27900 Msa1393730:CDS
CCATAACAAATGTATTTGAA+TGG 0.510743 tig0021758:-26153 None:intergenic
TTAGCTGCTGGAACAAGTCA+TGG 0.511790 tig0021758:+25782 Msa1393730:CDS
CAACAATCCTCCAACTGAGA+TGG 0.513272 tig0021758:-29034 None:intergenic
GAATTCTGATGAAGTAGTAC+AGG 0.516241 tig0021758:-27056 None:intergenic
CGCCTGAAAGTCTCTTTGAA+AGG 0.516860 tig0021758:-25827 None:intergenic
CAGAACACTGTCCTAATCTC+TGG 0.520013 tig0021758:+27891 Msa1393730:CDS
TGCTTCACTCTGACAACGGA+CGG 0.522941 tig0021758:+26268 Msa1393730:CDS
CTATCGTGTAGGTTAGAAGA+GGG 0.524773 tig0021758:+26883 Msa1393730:intron
GCATGCAATTTGGGAATCAT+GGG 0.526357 tig0021758:-26248 None:intergenic
CTAAAATGTTAAATTAAGCA+CGG 0.527344 tig0021758:+28893 Msa1393730:exon
ACAGGCCCTTGGACAGCAGT+TGG 0.528221 tig0021758:-27038 None:intergenic
TAAAATGTTAAATTAAGCAC+GGG 0.528454 tig0021758:+28894 Msa1393730:exon
TCGTCTGTTTCAACATCTCA+AGG 0.528457 tig0021758:+25617 Msa1393730:CDS
ATATTTCCAAATTCAATGAT+CGG 0.530341 tig0021758:+25641 Msa1393730:CDS
CTTGCAACTGCTAGTGAGAA+GGG 0.530985 tig0021758:+26298 Msa1393730:CDS
TGATGAATTGGGGTTGGCAC+CGG 0.533284 tig0021758:-27114 None:intergenic
GACTACGGTTGCTTAGCTGC+TGG 0.535019 tig0021758:+25770 Msa1393730:CDS
CAAATCAAAACTTTATTGGG+TGG 0.537171 tig0021758:-25941 None:intergenic
GAAGAAGAAGAATTAGGGAT+CGG 0.539177 tig0021758:-24008 None:intergenic
GATCATCAGAGCAGGTGCAT+TGG 0.542145 tig0021758:+25968 Msa1393730:CDS
ATTGATGTCTGCATCTGGCC+GGG 0.542391 tig0021758:-25705 None:intergenic
ATACGCCCAACTGCTGTCCA+AGG 0.547866 tig0021758:+27032 Msa1393730:CDS
CTCTGTCTCCCAATGTCCAG+TGG 0.551409 tig0021758:+26934 Msa1393730:CDS
TAATCTCTGGCATGGATGGA+AGG 0.552266 tig0021758:+27904 Msa1393730:CDS
GCTTCACTCTGACAACGGAC+GGG 0.555040 tig0021758:+26269 Msa1393730:CDS
ACTTCTCCTTTGTGACGACC+TGG 0.555547 tig0021758:-26181 None:intergenic
GATGAAGTAGTACAGGCCCT+TGG 0.557475 tig0021758:-27049 None:intergenic
TCTTGCAACTGCTAGTGAGA+AGG 0.557640 tig0021758:+26297 Msa1393730:CDS
GAGAGTGAGGGTGTTTGGGG+AGG 0.558785 tig0021758:+27001 Msa1393730:CDS
ATTGTGAATACCCCAATAGT+GGG 0.562593 tig0021758:+25666 Msa1393730:CDS
CTTGAGAGTGAGGGTGTTTG+GGG 0.564799 tig0021758:+26998 Msa1393730:CDS
ACTACAAGTCCTCGACGAGC+TGG 0.566326 tig0021758:+28932 Msa1393730:three_prime_UTR
CGTGTAGGTTAGAAGAGGGG+TGG 0.568066 tig0021758:+26887 Msa1393730:intron
GACGAATTGATATGAGATGA+GGG 0.569550 tig0021758:-25599 None:intergenic
CACTGTCCTAATCTCTGGCA+TGG 0.571130 tig0021758:+27896 Msa1393730:CDS
ACGAATTGATATGAGATGAG+GGG 0.571530 tig0021758:-25598 None:intergenic
CTACAGCACCAACAAGCGCT+AGG 0.572951 tig0021758:-25904 None:intergenic
TCATCATTATCTTTCATGAG+AGG 0.573870 tig0021758:+27131 Msa1393730:CDS
TGCATGCTTCACTCTGACAA+CGG 0.580675 tig0021758:+26264 Msa1393730:CDS
TGCTGCCAACCACTGGACAT+TGG 0.582381 tig0021758:-26943 None:intergenic
GGGAATCATGTTTACATACA+AGG 0.584659 tig0021758:-29011 None:intergenic
TTTGGGATGATCATCAGAGC+AGG 0.585812 tig0021758:+25960 Msa1393730:CDS
CTTTGACTGATTGATTTCCA+CGG 0.585960 tig0021758:+24352 Msa1393730:five_prime_UTR
GAATCTTCAATACAATGGAT+GGG 0.589619 tig0021758:+26332 Msa1393730:CDS
ATATATTCAACTTGAGAGTG+AGG 0.590254 tig0021758:+26988 Msa1393730:CDS
AGATAATGATGAATTGGGGT+TGG 0.592572 tig0021758:-27120 None:intergenic
GTATAACTTGCACTATCATG+TGG 0.595356 tig0021758:+29160 Msa1393730:three_prime_UTR
AAGATGAGGCCCCACTATTG+GGG 0.595901 tig0021758:-25676 None:intergenic
TCTCACTAGCAGTTGCAAGA+AGG 0.597081 tig0021758:-26294 None:intergenic
CGAATTGATATGAGATGAGG+GGG 0.598276 tig0021758:-25597 None:intergenic
GATTAGAATCTTCAATACAA+TGG 0.601484 tig0021758:+26327 Msa1393730:CDS
AGACGAATTGATATGAGATG+AGG 0.607029 tig0021758:-25600 None:intergenic
TATATTCAACTTGAGAGTGA+GGG 0.607920 tig0021758:+26989 Msa1393730:CDS
GATCGGAATGCAAAACGTGA+AGG 0.611307 tig0021758:-23991 None:intergenic
TCTATCGTGTAGGTTAGAAG+AGG 0.613791 tig0021758:+26882 Msa1393730:intron
CAGCTTTGATCAAGTAAATG+GGG 0.615526 tig0021758:+28838 Msa1393730:CDS
ACAATCCTCCAACTGAGATG+GGG 0.616647 tig0021758:-29032 None:intergenic
CAATCCTCCAACTGAGATGG+GGG 0.618630 tig0021758:-29031 None:intergenic
TACGCCCAACTGCTGTCCAA+GGG 0.621281 tig0021758:+27033 Msa1393730:CDS
GTTTCATGGAATCAGGACTA+CGG 0.621760 tig0021758:+25755 Msa1393730:CDS
TGGCCGGGAAAGAGAAGATG+AGG 0.624207 tig0021758:-25690 None:intergenic
TATAACTTGCACTATCATGT+GGG 0.628182 tig0021758:+29161 Msa1393730:three_prime_UTR
TGAAAACACTAAATTCATTG+TGG 0.629098 tig0021758:+27857 Msa1393730:CDS
GCTTGTCCAGGTCGTCACAA+AGG 0.632605 tig0021758:+26175 Msa1393730:CDS
CCGGTATTTGGAGAAATCAA+GGG 0.637476 tig0021758:-27095 None:intergenic
GGAGACATCATATTTACATG+TGG 0.642439 tig0021758:-28965 None:intergenic
CAAGCGCTAGGATGTTGCTA+CGG 0.644150 tig0021758:-25892 None:intergenic
TTATTGAGTGCAGAAAATGC+TGG 0.654198 tig0021758:+25568 Msa1393730:intron
CCATATATATTCATATGCAG+AGG 0.659672 tig0021758:-29202 None:intergenic
TTGGCAGCATCAAGTGACAA+AGG 0.665997 tig0021758:+26957 Msa1393730:CDS
GATACTATGGCAAATCCTAG+GGG 0.691243 tig0021758:+26112 Msa1393730:CDS
TGAAAGATAATGATGAATTG+GGG 0.693897 tig0021758:-27124 None:intergenic
AGCTTTGATCAAGTAAATGG+GGG 0.695560 tig0021758:+28839 Msa1393730:CDS
TATCGTGTAGGTTAGAAGAG+GGG 0.696069 tig0021758:+26884 Msa1393730:intron
TTGTGAATACCCCAATAGTG+GGG 0.696105 tig0021758:+25667 Msa1393730:CDS
GAAGAGTTTCCAGCTCGTCG+AGG 0.699537 tig0021758:-28941 None:intergenic
ATACTATGGCAAATCCTAGG+GGG 0.718473 tig0021758:+26113 Msa1393730:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TGTTTTTAAATAAATTTTAC+TGG - tig0021758:24597-24616 None:intergenic 10.0%
!! ATTTATTTAAAAACACGAAT+TGG + tig0021758:24602-24621 Msa1393730:intron 15.0%
!! TTTATTTAAAAACACGAATT+GGG + tig0021758:24603-24622 Msa1393730:intron 15.0%
!! CATATATATGAAGTAAATAA+TGG - tig0021758:25012-25031 None:intergenic 15.0%
!!! TATTTTCATATCTATATATG+AGG + tig0021758:26458-26477 Msa1393730:intron 15.0%
!! CAAATTATGATAATAATTTC+AGG - tig0021758:27188-27207 None:intergenic 15.0%
!! CTGAAATTATTATCATAATT+TGG + tig0021758:27186-27205 Msa1393730:intron 15.0%
!!! ATTTAATTTTTGAAAGAACA+GGG - tig0021758:27976-27995 None:intergenic 15.0%
!! GACAAATATTAATAAGTTAA+TGG + tig0021758:28208-28227 Msa1393730:intron 15.0%
!! GACAAATATTAATAAGTTAA+TGG + tig0021758:28208-28227 Msa1393730:intron 15.0%
!! AATCTTGACATTTATAATTA+TGG + tig0021758:28448-28467 Msa1393730:intron 15.0%
!!! ATCTGAAATATATTATTTTG+AGG - tig0021758:28673-28692 None:intergenic 15.0%
!! AAAGAAAATCAAAATTGAAA+AGG + tig0021758:29095-29114 Msa1393730:three_prime_UTR 15.0%
!! ATAAAAAACAAAATTGCGAT+GGG - tig0021758:24158-24177 None:intergenic 20.0%
!! TATAAAAAACAAAATTGCGA+TGG - tig0021758:24159-24178 None:intergenic 20.0%
!! AATGTAAAAAAATGTGATTG+AGG - tig0021758:24388-24407 None:intergenic 20.0%
!!! AAATAAATTTTACTGGCTTA+CGG - tig0021758:24590-24609 None:intergenic 20.0%
!!! ATTATTTCCAACAATTTTTG+TGG - tig0021758:24641-24660 None:intergenic 20.0%
!! TTTACAAACTCAAATTATAC+AGG - tig0021758:25100-25119 None:intergenic 20.0%
!! ATACACACACATATTTATAA+TGG + tig0021758:25196-25215 Msa1393730:intron 20.0%
!! CAATTCAAATTTCATAAGTT+TGG - tig0021758:25282-25301 None:intergenic 20.0%
!! ATATTTCCAAATTCAATGAT+CGG + tig0021758:25641-25660 Msa1393730:CDS 20.0%
!! GATATATGTTTATAACTTCA+TGG + tig0021758:26066-26085 Msa1393730:CDS 20.0%
!! GATATGAAAATAAAAAACCT+GGG - tig0021758:26450-26469 None:intergenic 20.0%
!! AGATATGAAAATAAAAAACC+TGG - tig0021758:26451-26470 None:intergenic 20.0%
!!! TTGTGAATTTTTTTATTGTG+TGG + tig0021758:26609-26628 Msa1393730:intron 20.0%
!! ATGAAAGATAATGATGAATT+GGG - tig0021758:27128-27147 None:intergenic 20.0%
!! ACCTAAAAACTATCTAAAAA+CGG - tig0021758:27288-27307 None:intergenic 20.0%
!! ACATAAAAAAGATCAAAAGT+AGG + tig0021758:27413-27432 Msa1393730:intron 20.0%
!! CATAAAAAAGATCAAAAGTA+GGG + tig0021758:27414-27433 Msa1393730:intron 20.0%
!!! TGTTTGTTTTATCATTCTTT+TGG + tig0021758:27572-27591 Msa1393730:intron 20.0%
!!! CATTCTGAACTAAAATATTT+TGG - tig0021758:27813-27832 None:intergenic 20.0%
!!! CAAAATATTTTAGTTCAGAA+TGG + tig0021758:27811-27830 Msa1393730:CDS 20.0%
!!! TTTAATTTTTGAAAGAACAG+GGG - tig0021758:27975-27994 None:intergenic 20.0%
!!! GATTTAATTTTTGAAAGAAC+AGG - tig0021758:27977-27996 None:intergenic 20.0%
!! CTTTCAAAAATTAAATCCTT+AGG + tig0021758:27980-27999 Msa1393730:intron 20.0%
!! TTTGAAAATGTAAAAACCTA+AGG - tig0021758:27999-28018 None:intergenic 20.0%
!!! TACATTTTCAAATAATGTTG+AGG + tig0021758:28007-28026 Msa1393730:intron 20.0%
!!! CTATTGAAATTATTGGTTTA+TGG + tig0021758:28055-28074 Msa1393730:intron 20.0%
!!! TAGAATACAATTTTACAATC+CGG + tig0021758:28115-28134 Msa1393730:intron 20.0%
!! AAAAATATCACATGATTCAA+TGG - tig0021758:28141-28160 None:intergenic 20.0%
!!! TTTGTTTGAAAGTATATTGT+TGG + tig0021758:28408-28427 Msa1393730:intron 20.0%
!!! AAGTTTTAATAGTTATTCAG+CGG + tig0021758:28483-28502 Msa1393730:intron 20.0%
!! CTAAAATGTTAAATTAAGCA+CGG + tig0021758:28893-28912 Msa1393730:exon 20.0%
!! TAAAATGTTAAATTAAGCAC+GGG + tig0021758:28894-28913 Msa1393730:exon 20.0%
!! TATTTCGTTTGTAAATATTG+TGG + tig0021758:29071-29090 Msa1393730:three_prime_UTR 20.0%
!!! GTCTTCTGTTTAATTTTTGT+CGG - tig0021758:23884-23903 None:intergenic 25.0%
! TTCGTCATTTCATTATATGT+TGG - tig0021758:23915-23934 None:intergenic 25.0%
! AAGAAGAAGAAGAAGAATTA+GGG - tig0021758:24016-24035 None:intergenic 25.0%
! AATCTTTAACAAAGAAAACG+AGG - tig0021758:24211-24230 None:intergenic 25.0%
! CAACATAGAAAAAAGCAAAA+AGG - tig0021758:24242-24261 None:intergenic 25.0%
! AAAATTTATTGCTGGAAAGA+GGG + tig0021758:24302-24321 Msa1393730:five_prime_UTR 25.0%
! TGTGTGATACTTGTATAAAT+GGG + tig0021758:24448-24467 Msa1393730:intron 25.0%
! ATACTTGTATAAATGGGAAT+TGG + tig0021758:24454-24473 Msa1393730:intron 25.0%
! TTGAAAAAGTGGAGTAAAAT+TGG + tig0021758:24772-24791 Msa1393730:intron 25.0%
! TTAAGTAATGTTCAATAGCT+AGG + tig0021758:24812-24831 Msa1393730:intron 25.0%
! TAAGTAATGTTCAATAGCTA+GGG + tig0021758:24813-24832 Msa1393730:intron 25.0%
! AACAGAAAATGCATAGAATT+AGG + tig0021758:24869-24888 Msa1393730:intron 25.0%
! TACAGGATACATAAATTCAT+GGG + tig0021758:24904-24923 Msa1393730:intron 25.0%
!!! ACCCAATAAAGTTTTGATTT+GGG + tig0021758:25943-25962 Msa1393730:CDS 25.0%
! TCCCAAATCAAAACTTTATT+GGG - tig0021758:25947-25966 None:intergenic 25.0%
! ATCCCAAATCAAAACTTTAT+TGG - tig0021758:25948-25967 None:intergenic 25.0%
! TCTTCATCAAATTGATACTA+TGG + tig0021758:26099-26118 Msa1393730:CDS 25.0%
! CCATAACAAATGTATTTGAA+TGG - tig0021758:26156-26175 None:intergenic 25.0%
!! CCATTCAAATACATTTGTTA+TGG + tig0021758:26153-26172 Msa1393730:CDS 25.0%
! GATTAGAATCTTCAATACAA+TGG + tig0021758:26327-26346 Msa1393730:CDS 25.0%
! TGGAAAGTTCAACATATTAA+TGG - tig0021758:26410-26429 None:intergenic 25.0%
! AAAATAAAAAACCTGGGAAA+TGG - tig0021758:26444-26463 None:intergenic 25.0%
! TTTCATATCTATATATGAGG+TGG + tig0021758:26461-26480 Msa1393730:intron 25.0%
!! TGAAAATGTTTTACTTGACT+TGG - tig0021758:26586-26605 None:intergenic 25.0%
! TTTAAGAATGATCAAGAATC+AGG - tig0021758:26641-26660 None:intergenic 25.0%
!! ACAATTTTCTTTGCATCTTT+TGG + tig0021758:26676-26695 Msa1393730:intron 25.0%
!! GCTAAAACATTGTTATTGTA+AGG - tig0021758:26708-26727 None:intergenic 25.0%
! TGAAAGATAATGATGAATTG+GGG - tig0021758:27127-27146 None:intergenic 25.0%
! CATGAAAGATAATGATGAAT+TGG - tig0021758:27129-27148 None:intergenic 25.0%
! AAGTATTTGAATTGGTAAAC+TGG - tig0021758:27234-27253 None:intergenic 25.0%
!!! TTTTTAGGTCTTCATCATTT+AGG + tig0021758:27299-27318 Msa1393730:intron 25.0%
!! TGCTCTATTAGATTTACTTT+TGG + tig0021758:27471-27490 Msa1393730:intron 25.0%
!! AATCAATGATTTTGCACATT+AGG + tig0021758:27547-27566 Msa1393730:intron 25.0%
! TAGTAGAACCCATATATTTA+TGG + tig0021758:27664-27683 Msa1393730:intron 25.0%
! GAGAACATCCATAAATATAT+GGG - tig0021758:27675-27694 None:intergenic 25.0%
! AGAGAACATCCATAAATATA+TGG - tig0021758:27676-27695 None:intergenic 25.0%
!!! TTGTTAGCTTACTTTTAAGA+TGG + tig0021758:27710-27729 Msa1393730:intron 25.0%
!! GGAAAATTGCATGATATTTT+TGG + tig0021758:27731-27750 Msa1393730:intron 25.0%
!! ACAATGAATTTAGTGTTTTC+AGG - tig0021758:27858-27877 None:intergenic 25.0%
! TGAAAACACTAAATTCATTG+TGG + tig0021758:27857-27876 Msa1393730:CDS 25.0%
!!! TTAATTTTTGAAAGAACAGG+GGG - tig0021758:27974-27993 None:intergenic 25.0%
! TTGCATGCTATTGAAATTAT+TGG + tig0021758:28048-28067 Msa1393730:intron 25.0%
! TAGATTCAAATGTCTCAATT+AGG - tig0021758:28365-28384 None:intergenic 25.0%
!! TTTGAAAGTATATTGTTGGA+TGG + tig0021758:28412-28431 Msa1393730:intron 25.0%
! TGAAAACAAATTACACATGT+GGG - tig0021758:28530-28549 None:intergenic 25.0%
! TTGAAAACAAATTACACATG+TGG - tig0021758:28531-28550 None:intergenic 25.0%
! GAAATTAATGTATCCTTTGT+AGG + tig0021758:28701-28720 Msa1393730:intron 25.0%
!!! TGTTTCTTTTTTTCCTACAA+AGG - tig0021758:28717-28736 None:intergenic 25.0%
! CAAAAAACAAGTTGTATGTA+AGG - tig0021758:28800-28819 None:intergenic 25.0%
!! CGTGCTTAATTTAACATTTT+AGG - tig0021758:28895-28914 None:intergenic 25.0%
!! TTCTGTTTAATTTTTGTCGG+AGG - tig0021758:23881-23900 None:intergenic 30.0%
TCATTATATGTTGGATTTCG+TGG - tig0021758:23906-23925 None:intergenic 30.0%
GAAGAAGAAGAAGAAGAATT+AGG - tig0021758:24017-24036 None:intergenic 30.0%
TATGTTGAAATTTCTGATCG+TGG + tig0021758:24255-24274 Msa1393730:intron 30.0%
ATGTTGAAATTTCTGATCGT+GGG + tig0021758:24256-24275 Msa1393730:intron 30.0%
CTGAAGTGAAAATTTATTGC+TGG + tig0021758:24294-24313 Msa1393730:five_prime_UTR 30.0%
GAAAATTTATTGCTGGAAAG+AGG + tig0021758:24301-24320 Msa1393730:five_prime_UTR 30.0%
ACTTACATAATGACATTGAC+AGG - tig0021758:24421-24440 None:intergenic 30.0%
CTGTGTGATACTTGTATAAA+TGG + tig0021758:24447-24466 Msa1393730:intron 30.0%
GGAAACAATGTTATCAATCA+TGG + tig0021758:24475-24494 Msa1393730:intron 30.0%
TCTGTACTAATGCACAATAA+CGG + tig0021758:24527-24546 Msa1393730:intron 30.0%
! CTCAAAGTATTAAGTGATGT+AGG - tig0021758:24731-24750 None:intergenic 30.0%
CTACATCACTTAATACTTTG+AGG + tig0021758:24729-24748 Msa1393730:intron 30.0%
!!! TCCACTTTTTCAAGCAATTA+TGG - tig0021758:24765-24784 None:intergenic 30.0%
TGGAGTAAAATTGGAATTGT+TGG + tig0021758:24781-24800 Msa1393730:intron 30.0%
AAGTAATGTTCAATAGCTAG+GGG + tig0021758:24814-24833 Msa1393730:intron 30.0%
AGAAAATGCATAGAATTAGG+AGG + tig0021758:24872-24891 Msa1393730:intron 30.0%
CTACAGGATACATAAATTCA+TGG + tig0021758:24903-24922 Msa1393730:intron 30.0%
CACAGTTAAATTCATTGGTA+GGG - tig0021758:24945-24964 None:intergenic 30.0%
!!! TTTTAATTTTCATTGCCTCG+TGG + tig0021758:24976-24995 Msa1393730:intron 30.0%
TTGAATTGCTAAACATCTTG+TGG + tig0021758:25294-25313 Msa1393730:intron 30.0%
CTAACTCAAACAAGTGAAAA+GGG - tig0021758:25339-25358 None:intergenic 30.0%
ACTAACTCAAACAAGTGAAA+AGG - tig0021758:25340-25359 None:intergenic 30.0%
CAATTTCCGATCATTGAATT+TGG - tig0021758:25650-25669 None:intergenic 30.0%
CAAATCAAAACTTTATTGGG+TGG - tig0021758:25944-25963 None:intergenic 30.0%
!!! CACCCAATAAAGTTTTGATT+TGG + tig0021758:25942-25961 Msa1393730:CDS 30.0%
AGAATCTTCAATACAATGGA+TGG + tig0021758:26331-26350 Msa1393730:CDS 30.0%
GAATCTTCAATACAATGGAT+GGG + tig0021758:26332-26351 Msa1393730:CDS 30.0%
GGGAAATGGAAAATATGAAA+TGG - tig0021758:26430-26449 None:intergenic 30.0%
! TTTCATATTTTCCATTTCCC+AGG + tig0021758:26430-26449 Msa1393730:intron 30.0%
! ATTTTCTTTGCATCTTTTGG+AGG + tig0021758:26679-26698 Msa1393730:intron 30.0%
AAGATCAAACTGAATCCTAT+TGG - tig0021758:26824-26843 None:intergenic 30.0%
GATTATTGAACACGAAAAGA+GGG - tig0021758:26856-26875 None:intergenic 30.0%
!! AATCGATTTTTCTATCGTGT+AGG + tig0021758:26872-26891 Msa1393730:intron 30.0%
ATATATTCAACTTGAGAGTG+AGG + tig0021758:26988-27007 Msa1393730:CDS 30.0%
TATATTCAACTTGAGAGTGA+GGG + tig0021758:26989-27008 Msa1393730:CDS 30.0%
TCATCATTATCTTTCATGAG+AGG + tig0021758:27131-27150 Msa1393730:CDS 30.0%
!!! GCCGTTTTTAGATAGTTTTT+AGG + tig0021758:27284-27303 Msa1393730:intron 30.0%
TCATCATTTAGGAAACTTGA+TGG + tig0021758:27310-27329 Msa1393730:intron 30.0%
TTCATAAAAACAGGAGACTT+CGG - tig0021758:27368-27387 None:intergenic 30.0%
!! ATTTACTTTTGGATTTGTGC+AGG + tig0021758:27482-27501 Msa1393730:intron 30.0%
!! TTTACTTTTGGATTTGTGCA+GGG + tig0021758:27483-27502 Msa1393730:intron 30.0%
!!! TTTTGGTTTATGAGTTATCC+AGG + tig0021758:27589-27608 Msa1393730:intron 30.0%
GATGTTATTACATGCTTGAA+AGG - tig0021758:27641-27660 None:intergenic 30.0%
ATTGTTTCCAGAGAGAAAAT+AGG - tig0021758:27778-27797 None:intergenic 30.0%
ACTAAATTCATTGTGGCATT+TGG + tig0021758:27864-27883 Msa1393730:CDS 30.0%
CTCTCTTCATTTAATGAACT+TGG + tig0021758:28755-28774 Msa1393730:intron 30.0%
AAGAGTTTATTGCTTTGTGT+TGG - tig0021758:28989-29008 None:intergenic 30.0%
! TATAACTTGCACTATCATGT+GGG + tig0021758:29161-29180 Msa1393730:three_prime_UTR 30.0%
CCATATATATTCATATGCAG+AGG - tig0021758:29205-29224 None:intergenic 30.0%
CCTCTGCATATGAATATATA+TGG + tig0021758:29202-29221 Msa1393730:three_prime_UTR 30.0%
! AGAGACAGGAATTTGGAATT+TGG + tig0021758:23954-23973 Msa1393730:five_prime_UTR 35.0%
GAAGAAGAAGAATTAGGGAT+CGG - tig0021758:24011-24030 None:intergenic 35.0%
! CTTTGACTGATTGATTTCCA+CGG + tig0021758:24352-24371 Msa1393730:five_prime_UTR 35.0%
AAAATGTGATTGAGGCAAGA+GGG - tig0021758:24380-24399 None:intergenic 35.0%
AAAAATGTGATTGAGGCAAG+AGG - tig0021758:24381-24400 None:intergenic 35.0%
CCTATAGTGTTATAGCTTAG+CGG - tig0021758:24565-24584 None:intergenic 35.0%
! GCATTGACCACAAAAATTGT+TGG + tig0021758:24631-24650 Msa1393730:intron 35.0%
GCCATAATTGCTTGAAAAAG+TGG + tig0021758:24761-24780 Msa1393730:intron 35.0%
! AATTGGAATTGTTGGCTGTT+AGG + tig0021758:24789-24808 Msa1393730:intron 35.0%
GCACAGTTAAATTCATTGGT+AGG - tig0021758:24946-24965 None:intergenic 35.0%
TGCAGCACAGTTAAATTCAT+TGG - tig0021758:24950-24969 None:intergenic 35.0%
TGTTATCTAGAGAATGAGAC+AGG + tig0021758:25033-25052 Msa1393730:intron 35.0%
TCTTCAACACATGAAATGAC+TGG + tig0021758:25378-25397 Msa1393730:intron 35.0%
! GCATTTTCTGCACTCAATAA+CGG - tig0021758:25568-25587 None:intergenic 35.0%
TTATTGAGTGCAGAAAATGC+TGG + tig0021758:25568-25587 Msa1393730:intron 35.0%
ACGAATTGATATGAGATGAG+GGG - tig0021758:25601-25620 None:intergenic 35.0%
GACGAATTGATATGAGATGA+GGG - tig0021758:25602-25621 None:intergenic 35.0%
AGACGAATTGATATGAGATG+AGG - tig0021758:25603-25622 None:intergenic 35.0%
AATTGTGAATACCCCAATAG+TGG + tig0021758:25665-25684 Msa1393730:CDS 35.0%
ATTGTGAATACCCCAATAGT+GGG + tig0021758:25666-25685 Msa1393730:CDS 35.0%
!! CTGATTTGTTCTCAGTTTCA+TGG + tig0021758:25741-25760 Msa1393730:CDS 35.0%
AACCTTTCAAAGAGACTTTC+AGG + tig0021758:25825-25844 Msa1393730:CDS 35.0%
TTCAGGCGTGATTTAAAAAG+TGG + tig0021758:25842-25861 Msa1393730:CDS 35.0%
AACTTTATTGGGTGGATAGT+TGG - tig0021758:25936-25955 None:intergenic 35.0%
! ACATTTAGATCTGAAGTTCG+TGG + tig0021758:25998-26017 Msa1393730:CDS 35.0%
TTGATACTATGGCAAATCCT+AGG + tig0021758:26110-26129 Msa1393730:CDS 35.0%
TGATACTATGGCAAATCCTA+GGG + tig0021758:26111-26130 Msa1393730:CDS 35.0%
! TTTTACGCCTCAACATTCTT+GGG + tig0021758:26764-26783 Msa1393730:intron 35.0%
AAGTGGAACTTCTTTCCAAT+AGG + tig0021758:26806-26825 Msa1393730:intron 35.0%
CGATTATTGAACACGAAAAG+AGG - tig0021758:26857-26876 None:intergenic 35.0%
GAATTCTGATGAAGTAGTAC+AGG - tig0021758:27059-27078 None:intergenic 35.0%
AGATAATGATGAATTGGGGT+TGG - tig0021758:27123-27142 None:intergenic 35.0%
GGTAAACTGGAAAAGATGAT+TGG - tig0021758:27221-27240 None:intergenic 35.0%
AGCTGGCTAAGTATTTGAAT+TGG - tig0021758:27242-27261 None:intergenic 35.0%
! TCATGTAAGATGATTTGTGC+AGG - tig0021758:27527-27546 None:intergenic 35.0%
ATCAAAGATGTAATGCTACC+TGG - tig0021758:27610-27629 None:intergenic 35.0%
! GTTCTTACCTATTTTCTCTC+TGG + tig0021758:27768-27787 Msa1393730:intron 35.0%
!! ATTTAGTGTTTTCAGGCAAG+TGG - tig0021758:27851-27870 None:intergenic 35.0%
!! TTATTGGTTTATGGTGATCC+AGG + tig0021758:28064-28083 Msa1393730:intron 35.0%
ATATCACATGATTCAATGGC+CGG - tig0021758:28137-28156 None:intergenic 35.0%
TTAAGCTGTATGTCTACAGT+TGG - tig0021758:28308-28327 None:intergenic 35.0%
ACAAGTTGTATGTAAGGATG+AGG - tig0021758:28794-28813 None:intergenic 35.0%
! TGCAGCTTTGATCAAGTAAA+TGG + tig0021758:28836-28855 Msa1393730:CDS 35.0%
! GCAGCTTTGATCAAGTAAAT+GGG + tig0021758:28837-28856 Msa1393730:CDS 35.0%
! CAGCTTTGATCAAGTAAATG+GGG + tig0021758:28838-28857 Msa1393730:CDS 35.0%
! AGCTTTGATCAAGTAAATGG+GGG + tig0021758:28839-28858 Msa1393730:CDS 35.0%
GGAGACATCATATTTACATG+TGG - tig0021758:28968-28987 None:intergenic 35.0%
GGGAATCATGTTTACATACA+AGG - tig0021758:29014-29033 None:intergenic 35.0%
! GTATAACTTGCACTATCATG+TGG + tig0021758:29160-29179 Msa1393730:three_prime_UTR 35.0%
TTCTTCTTCTTCTTCATCCC+TGG + tig0021758:24022-24041 Msa1393730:five_prime_UTR 40.0%
AGAAAACGAGGAAATGAAGC+AGG - tig0021758:24199-24218 None:intergenic 40.0%
CCGCTAAGCTATAACACTAT+AGG + tig0021758:24562-24581 Msa1393730:intron 40.0%
! TAATTTTCATTGCCTCGTGG+AGG + tig0021758:24979-24998 Msa1393730:intron 40.0%
TCTAGAGAATGAGACAGGAA+AGG + tig0021758:25038-25057 Msa1393730:intron 40.0%
GAAAAGGGATTCAACAGGAA+TGG - tig0021758:25324-25343 None:intergenic 40.0%
CAAGTGAAAAGGGATTCAAC+AGG - tig0021758:25329-25348 None:intergenic 40.0%
AATGTTCCATTAACAGTGCC+TGG + tig0021758:25410-25429 Msa1393730:intron 40.0%
! AATAACGGTGAAGTGTCAGA+AGG - tig0021758:25553-25572 None:intergenic 40.0%
CGAATTGATATGAGATGAGG+GGG - tig0021758:25600-25619 None:intergenic 40.0%
TCGTCTGTTTCAACATCTCA+AGG + tig0021758:25617-25636 Msa1393730:CDS 40.0%
TTGTGAATACCCCAATAGTG+GGG + tig0021758:25667-25686 Msa1393730:CDS 40.0%
GTTCTCAGTTTCATGGAATC+AGG + tig0021758:25748-25767 Msa1393730:CDS 40.0%
GTTTCATGGAATCAGGACTA+CGG + tig0021758:25755-25774 Msa1393730:CDS 40.0%
AGGCGTGATTTAAAAAGTGG+CGG + tig0021758:25845-25864 Msa1393730:CDS 40.0%
GATACTATGGCAAATCCTAG+GGG + tig0021758:26112-26131 Msa1393730:CDS 40.0%
ATACTATGGCAAATCCTAGG+GGG + tig0021758:26113-26132 Msa1393730:CDS 40.0%
!! ACATTTGTTATGGCTTGTCC+AGG + tig0021758:26163-26182 Msa1393730:CDS 40.0%
!! GAAGTTCGAGTTGAACACTT+TGG + tig0021758:26199-26218 Msa1393730:CDS 40.0%
GCATGCAATTTGGGAATCAT+GGG - tig0021758:26251-26270 None:intergenic 40.0%
AGCATGCAATTTGGGAATCA+TGG - tig0021758:26252-26271 None:intergenic 40.0%
CAGAGTGAAGCATGCAATTT+GGG - tig0021758:26260-26279 None:intergenic 40.0%
TCAGAGTGAAGCATGCAATT+TGG - tig0021758:26261-26280 None:intergenic 40.0%
! CTTTTACGCCTCAACATTCT+TGG + tig0021758:26763-26782 Msa1393730:intron 40.0%
TTCCACTTCCAAAACTATCG+TGG - tig0021758:26794-26813 None:intergenic 40.0%
TCTATCGTGTAGGTTAGAAG+AGG + tig0021758:26882-26901 Msa1393730:intron 40.0%
CTATCGTGTAGGTTAGAAGA+GGG + tig0021758:26883-26902 Msa1393730:intron 40.0%
TATCGTGTAGGTTAGAAGAG+GGG + tig0021758:26884-26903 Msa1393730:intron 40.0%
CCGGTATTTGGAGAAATCAA+GGG - tig0021758:27098-27117 None:intergenic 40.0%
CCCTTGATTTCTCCAAATAC+CGG + tig0021758:27095-27114 Msa1393730:CDS 40.0%
ACCGGTATTTGGAGAAATCA+AGG - tig0021758:27099-27118 None:intergenic 40.0%
TTCAAATACTTAGCCAGCTC+AGG + tig0021758:27243-27262 Msa1393730:intron 40.0%
TCAAATACTTAGCCAGCTCA+GGG + tig0021758:27244-27263 Msa1393730:intron 40.0%
CCAGCACAGTTCATAAAAAC+AGG - tig0021758:27377-27396 None:intergenic 40.0%
!!! CCTGTTTTTATGAACTGTGC+TGG + tig0021758:27374-27393 Msa1393730:intron 40.0%
! TTTCTCTCTGGAAACAATGC+AGG + tig0021758:27780-27799 Msa1393730:intron 40.0%
! TTCTCTCTGGAAACAATGCA+GGG + tig0021758:27781-27800 Msa1393730:intron 40.0%
GTAGCTTGATTGCGAGTTAA+GGG - tig0021758:28343-28362 None:intergenic 40.0%
AACAATCCTCCAACTGAGAT+GGG - tig0021758:29036-29055 None:intergenic 40.0%
TGAGAAACAGAGAGAGAGAC+AGG + tig0021758:23940-23959 Msa1393730:five_prime_UTR 45.0%
CAGAGAGAGAGACAGGAATT+TGG + tig0021758:23947-23966 Msa1393730:five_prime_UTR 45.0%
GATCGGAATGCAAAACGTGA+AGG - tig0021758:23994-24013 None:intergenic 45.0%
GGGAAAGAGTCAAAGAGGAA+AGG - tig0021758:24138-24157 None:intergenic 45.0%
TGTTCAATAGCTAGGGGTTC+TGG + tig0021758:24820-24839 Msa1393730:intron 45.0%
TTAGGAGGAGTTGCAACTAC+AGG + tig0021758:24887-24906 Msa1393730:intron 45.0%
!! AATGGATTGTTTCCTCCACG+AGG - tig0021758:24994-25013 None:intergenic 45.0%
GCTGCAGAAGTAGTACAAAG+CGG + tig0021758:25066-25085 Msa1393730:intron 45.0%
CTGCAGAAGTAGTACAAAGC+GGG + tig0021758:25067-25086 Msa1393730:intron 45.0%
! GAATTGCCAGGCACTGTTAA+TGG - tig0021758:25419-25438 None:intergenic 45.0%
CTGTCATTGATGTCTGCATC+TGG - tig0021758:25713-25732 None:intergenic 45.0%
TTAGCTGCTGGAACAAGTCA+TGG + tig0021758:25782-25801 Msa1393730:CDS 45.0%
CGCCTGAAAGTCTCTTTGAA+AGG - tig0021758:25830-25849 None:intergenic 45.0%
! TTTGGGATGATCATCAGAGC+AGG + tig0021758:25960-25979 Msa1393730:CDS 45.0%
TGCATGCTTCACTCTGACAA+CGG + tig0021758:26264-26283 Msa1393730:CDS 45.0%
TCTCACTAGCAGTTGCAAGA+AGG - tig0021758:26297-26316 None:intergenic 45.0%
TCTTGCAACTGCTAGTGAGA+AGG + tig0021758:26297-26316 Msa1393730:CDS 45.0%
CTTGCAACTGCTAGTGAGAA+GGG + tig0021758:26298-26317 Msa1393730:CDS 45.0%
GGGTCTCGTTTACAAGAAGT+AGG + tig0021758:26352-26371 Msa1393730:intron 45.0%
TGGACAACCCAAGAATGTTG+AGG - tig0021758:26774-26793 None:intergenic 45.0%
! TGGGTTGTCCACGATAGTTT+TGG + tig0021758:26783-26802 Msa1393730:intron 45.0%
!!! GTCCACGATAGTTTTGGAAG+TGG + tig0021758:26789-26808 Msa1393730:intron 45.0%
TTGGCAGCATCAAGTGACAA+AGG + tig0021758:26957-26976 Msa1393730:CDS 45.0%
!! AACTTGAGAGTGAGGGTGTT+TGG + tig0021758:26996-27015 Msa1393730:CDS 45.0%
!! ACTTGAGAGTGAGGGTGTTT+GGG + tig0021758:26997-27016 Msa1393730:CDS 45.0%
TCAGGTGCTCTGCATTACAA+AGG - tig0021758:27170-27189 None:intergenic 45.0%
CATAATATAGCTCCCTGAGC+TGG - tig0021758:27259-27278 None:intergenic 45.0%
! TCTCTCTGGAAACAATGCAG+GGG + tig0021758:27782-27801 Msa1393730:intron 45.0%
CAGAACACTGTCCTAATCTC+TGG + tig0021758:27891-27910 Msa1393730:CDS 45.0%
TTCCATCCATGCCAGAGATT+AGG - tig0021758:27905-27924 None:intergenic 45.0%
TAATCTCTGGCATGGATGGA+AGG + tig0021758:27904-27923 Msa1393730:CDS 45.0%
TCAATTATACAAGCCCAGCC+TGG - tig0021758:28085-28104 None:intergenic 45.0%
GGTAGCTTGATTGCGAGTTA+AGG - tig0021758:28344-28363 None:intergenic 45.0%
ACAATCCTCCAACTGAGATG+GGG - tig0021758:29035-29054 None:intergenic 45.0%
CAACAATCCTCCAACTGAGA+TGG - tig0021758:29037-29056 None:intergenic 45.0%
CATCTCAGTTGGAGGATTGT+TGG + tig0021758:29035-29054 Msa1393730:three_prime_UTR 45.0%
! CTTCTTCATCCCTGGTAACG+CGG + tig0021758:24030-24049 Msa1393730:intron 50.0%
TTGCGTAAACCGCGTTACCA+GGG - tig0021758:24042-24061 None:intergenic 50.0%
ATTGCGTAAACCGCGTTACC+AGG - tig0021758:24043-24062 None:intergenic 50.0%
GCGATGGGAAAGAGTCAAAG+AGG - tig0021758:24143-24162 None:intergenic 50.0%
! TCAATAGCTAGGGGTTCTGG+TGG + tig0021758:24823-24842 Msa1393730:intron 50.0%
! ATGCTTGCTTGTTGCAGCCT+GGG - tig0021758:25461-25480 None:intergenic 50.0%
AAGATGAGGCCCCACTATTG+GGG - tig0021758:25679-25698 None:intergenic 50.0%
GAAGATGAGGCCCCACTATT+GGG - tig0021758:25680-25699 None:intergenic 50.0%
AGAAGATGAGGCCCCACTAT+TGG - tig0021758:25681-25700 None:intergenic 50.0%
ATTGATGTCTGCATCTGGCC+GGG - tig0021758:25708-25727 None:intergenic 50.0%
CATTGATGTCTGCATCTGGC+CGG - tig0021758:25709-25728 None:intergenic 50.0%
CAAGCGCTAGGATGTTGCTA+CGG - tig0021758:25895-25914 None:intergenic 50.0%
AGCAACATCCTAGCGCTTGT+TGG + tig0021758:25896-25915 Msa1393730:CDS 50.0%
GATCATCAGAGCAGGTGCAT+TGG + tig0021758:25968-25987 Msa1393730:CDS 50.0%
ACTTCTCCTTTGTGACGACC+TGG - tig0021758:26184-26203 None:intergenic 50.0%
TGCTTCACTCTGACAACGGA+CGG + tig0021758:26268-26287 Msa1393730:CDS 50.0%
AGGTTAGAAGAGGGGTGGAT+AGG + tig0021758:26892-26911 Msa1393730:intron 50.0%
GGTTAGAAGAGGGGTGGATA+GGG + tig0021758:26893-26912 Msa1393730:intron 50.0%
!! CTTGAGAGTGAGGGTGTTTG+GGG + tig0021758:26998-27017 Msa1393730:CDS 50.0%
GATGAAGTAGTACAGGCCCT+TGG - tig0021758:27052-27071 None:intergenic 50.0%
! TGATGAATTGGGGTTGGCAC+CGG - tig0021758:27117-27136 None:intergenic 50.0%
CACTGTCCTAATCTCTGGCA+TGG + tig0021758:27896-27915 Msa1393730:CDS 50.0%
GTCCTAATCTCTGGCATGGA+TGG + tig0021758:27900-27919 Msa1393730:CDS 50.0%
TGGTTTATGGTGATCCAGGC+TGG + tig0021758:28068-28087 Msa1393730:intron 50.0%
GGTTTATGGTGATCCAGGCT+GGG + tig0021758:28069-28088 Msa1393730:intron 50.0%
TCAACTGCAAAGCATGCGTG+AGG - tig0021758:28628-28647 None:intergenic 50.0%
CATGATTCCCCCATCTCAGT+TGG + tig0021758:29024-29043 Msa1393730:three_prime_UTR 50.0%
CAATCCTCCAACTGAGATGG+GGG - tig0021758:29034-29053 None:intergenic 50.0%
!! ATTGAGGCAAGAGGGTACCG+TGG - tig0021758:24372-24391 None:intergenic 55.0%
! AGGGGTTCTGGTGGTAGTAG+TGG + tig0021758:24832-24851 Msa1393730:intron 55.0%
AGTAGCAGGAGGGAATTGCC+AGG - tig0021758:25431-25450 None:intergenic 55.0%
GGGGGATGAAAGTAGCAGGA+GGG - tig0021758:25441-25460 None:intergenic 55.0%
TGGGGGATGAAAGTAGCAGG+AGG - tig0021758:25442-25461 None:intergenic 55.0%
!! TCCTGCTACTTTCATCCCCC+AGG + tig0021758:25441-25460 Msa1393730:intron 55.0%
! TGCTTGCTTGTTGCAGCCTG+GGG - tig0021758:25460-25479 None:intergenic 55.0%
! CATGCTTGCTTGTTGCAGCC+TGG - tig0021758:25462-25481 None:intergenic 55.0%
GGGCCTCATCTTCTCTTTCC+CGG + tig0021758:25687-25706 Msa1393730:CDS 55.0%
TGGCCGGGAAAGAGAAGATG+AGG - tig0021758:25693-25712 None:intergenic 55.0%
GACTACGGTTGCTTAGCTGC+TGG + tig0021758:25770-25789 Msa1393730:CDS 55.0%
CTACAGCACCAACAAGCGCT+AGG - tig0021758:25907-25926 None:intergenic 55.0%
GAAAGACAGCACAACCCCCT+AGG - tig0021758:26130-26149 None:intergenic 55.0%
GCTTGTCCAGGTCGTCACAA+AGG + tig0021758:26175-26194 Msa1393730:CDS 55.0%
GCTTCACTCTGACAACGGAC+GGG + tig0021758:26269-26288 Msa1393730:CDS 55.0%
CGTGTAGGTTAGAAGAGGGG+TGG + tig0021758:26887-26906 Msa1393730:intron 55.0%
CTCTGTCTCCCAATGTCCAG+TGG + tig0021758:26934-26953 Msa1393730:CDS 55.0%
GTCTCCCAATGTCCAGTGGT+TGG + tig0021758:26938-26957 Msa1393730:CDS 55.0%
GCTGCCAACCACTGGACATT+GGG - tig0021758:26945-26964 None:intergenic 55.0%
TGCTGCCAACCACTGGACAT+TGG - tig0021758:26946-26965 None:intergenic 55.0%
CACTTGATGCTGCCAACCAC+TGG - tig0021758:26953-26972 None:intergenic 55.0%
ATACGCCCAACTGCTGTCCA+AGG + tig0021758:27032-27051 Msa1393730:CDS 55.0%
TACGCCCAACTGCTGTCCAA+GGG + tig0021758:27033-27052 Msa1393730:CDS 55.0%
!! TTGGGGTTGGCACCGGTATT+TGG - tig0021758:27110-27129 None:intergenic 55.0%
CTGCAAAGCATGCGTGAGGA+AGG - tig0021758:28624-28643 None:intergenic 55.0%
TGGGGGAGAGATGTTGCAGA+AGG + tig0021758:28856-28875 Msa1393730:CDS 55.0%
ACTACAAGTCCTCGACGAGC+TGG + tig0021758:28932-28951 Msa1393730:three_prime_UTR 55.0%
GAAGAGTTTCCAGCTCGTCG+AGG - tig0021758:28944-28963 None:intergenic 55.0%
GATTCCCCCATCTCAGTTGG+AGG + tig0021758:29027-29046 Msa1393730:three_prime_UTR 55.0%
GCCTGGGGGATGAAAGTAGC+AGG - tig0021758:25445-25464 None:intergenic 60.0%
! GCTTGCTTGTTGCAGCCTGG+GGG - tig0021758:25459-25478 None:intergenic 60.0%
!! GAGAGTGAGGGTGTTTGGGG+AGG + tig0021758:27001-27020 Msa1393730:CDS 60.0%
CAGGCCCTTGGACAGCAGTT+GGG - tig0021758:27040-27059 None:intergenic 60.0%
ACAGGCCCTTGGACAGCAGT+TGG - tig0021758:27041-27060 None:intergenic 60.0%
CACTCAGCTGACGAGTCAGC+AGG - tig0021758:27942-27961 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
tig0021758 gene 23872 29264 23872 ID=Msa1393730;Name=Msa1393730
tig0021758 mRNA 23872 29264 23872 ID=Msa1393730-mRNA-1;Parent=Msa1393730;Name=Msa1393730-mRNA-1;_AED=0.01;_eAED=0.01;_QI=260|1|1|1|0.6|0.5|6|360|415
tig0021758 exon 23872 24043 23872 ID=Msa1393730-mRNA-1:exon:13954;Parent=Msa1393730-mRNA-1
tig0021758 exon 24289 24373 24289 ID=Msa1393730-mRNA-1:exon:13955;Parent=Msa1393730-mRNA-1
tig0021758 exon 25581 26369 25581 ID=Msa1393730-mRNA-1:exon:13956;Parent=Msa1393730-mRNA-1
tig0021758 exon 26894 27152 26894 ID=Msa1393730-mRNA-1:exon:13957;Parent=Msa1393730-mRNA-1
tig0021758 exon 27802 27925 27802 ID=Msa1393730-mRNA-1:exon:13958;Parent=Msa1393730-mRNA-1
tig0021758 exon 28826 29264 28826 ID=Msa1393730-mRNA-1:exon:13959;Parent=Msa1393730-mRNA-1
tig0021758 five_prime_UTR 23872 24043 23872 ID=Msa1393730-mRNA-1:five_prime_utr;Parent=Msa1393730-mRNA-1
tig0021758 five_prime_UTR 24289 24373 24289 ID=Msa1393730-mRNA-1:five_prime_utr;Parent=Msa1393730-mRNA-1
tig0021758 five_prime_UTR 25581 25583 25581 ID=Msa1393730-mRNA-1:five_prime_utr;Parent=Msa1393730-mRNA-1
tig0021758 CDS 25584 26369 25584 ID=Msa1393730-mRNA-1:cds;Parent=Msa1393730-mRNA-1
tig0021758 CDS 26894 27152 26894 ID=Msa1393730-mRNA-1:cds;Parent=Msa1393730-mRNA-1
tig0021758 CDS 27802 27925 27802 ID=Msa1393730-mRNA-1:cds;Parent=Msa1393730-mRNA-1
tig0021758 CDS 28826 28904 28826 ID=Msa1393730-mRNA-1:cds;Parent=Msa1393730-mRNA-1
tig0021758 three_prime_UTR 28905 29264 28905 ID=Msa1393730-mRNA-1:three_prime_utr;Parent=Msa1393730-mRNA-1
Gene Sequence

>Msa1393730

ATGCTGGCAGATTCCCCCTCATCTCATATCAATTCGTCTGTTTCAACATCTCAAGGAATATTTCCAAATTCAATGATCGGAAATTGTGAATACCCCAATAGTGGGGCCTCATCTTCTCTTTCCCGGCCAGATGCAGACATCAATGACAGTGATGAATCTGATTTGTTCTCAGTTTCATGGAATCAGGACTACGGTTGCTTAGCTGCTGGAACAAGTCATGGTTTTCGTATATATAATTGTGAACCTTTCAAAGAGACTTTCAGGCGTGATTTAAAAAGTGGCGGTTTTAAAATTGTAGAGATGCTGTTCCGTAGCAACATCCTAGCGCTTGTTGGTGCTGTAGCAAATTCCAACTATCCACCCAATAAAGTTTTGATTTGGGATGATCATCAGAGCAGGTGCATTGGTGAATTCACATTTAGATCTGAAGTTCGTGGAGTGAAATTAAGACGTGATCGAATTGTAGTTGTTCTTGAGCACAAGATATATGTTTATAACTTCATGGATTTGAAGCTTCTTCATCAAATTGATACTATGGCAAATCCTAGGGGGTTGTGCTGTCTTTCACACCATTCAAATACATTTGTTATGGCTTGTCCAGGTCGTCACAAAGGAGAAGTTCGAGTTGAACACTTTGGACTGAATGTCACAAAATTTATCAATGCCCATGATTCCCAAATTGCATGCTTCACTCTGACAACGGACGGGCTCCTTCTTGCAACTGCTAGTGAGAAGGGCACTCTGATTAGAATCTTCAATACAATGGATGGGTCTCGTTTACAAGAAGTTAGAAGAGGGGTGGATAGGGCTGAAATCAACAGTATAGCTCTGTCTCCCAATGTCCAGTGGTTGGCAGCATCAAGTGACAAAGGCACTGTTCATATATTCAACTTGAGAGTGAGGGTGTTTGGGGAGGATAGTGTAATACGCCCAACTGCTGTCCAAGGGCCTGTACTACTTCATCAGAATTCTTCAACTGCTTTAGATCCCTTGATTTCTCCAAATACCGGTGCCAACCCCAATTCATCATTATCTTTCATGAGAGGGGTTTTACCAAAATATTTTAGTTCAGAATGGTCATTTGCACAGTTCCACTTGCCTGAAAACACTAAATTCATTGTGGCATTTGGATCACAGAACACTGTCCTAATCTCTGGCATGGATGGAAGCTTTTACAAATGCAGCTTTGATCAAGTAAATGGGGGAGAGATGTTGCAGAAGGAGTATGTTCGCTTCCTAAAATGTTAA

Protein sequence

>Msa1393730

MLADSPSSHINSSVSTSQGIFPNSMIGNCEYPNSGASSSLSRPDADINDSDESDLFSVSWNQDYGCLAAGTSHGFRIYNCEPFKETFRRDLKSGGFKIVEMLFRSNILALVGAVANSNYPPNKVLIWDDHQSRCIGEFTFRSEVRGVKLRRDRIVVVLEHKIYVYNFMDLKLLHQIDTMANPRGLCCLSHHSNTFVMACPGRHKGEVRVEHFGLNVTKFINAHDSQIACFTLTTDGLLLATASEKGTLIRIFNTMDGSRLQEVRRGVDRAEINSIALSPNVQWLAASSDKGTVHIFNLRVRVFGEDSVIRPTAVQGPVLLHQNSSTALDPLISPNTGANPNSSLSFMRGVLPKYFSSEWSFAQFHLPENTKFIVAFGSQNTVLISGMDGSFYKCSFDQVNGGEMLQKEYVRFLKC*