AlfalfaGEDB | Msa1393730

M. sativa cultivar zhongmu-4 / Msa1393730

KEGG: -
GO: GO:0000045 GO:0000407 GO:0000422 GO:0003674 GO:0005488 GO:0005543 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006464 GO:0006497 GO:0006807 GO:0006914 GO:0006996 GO:0007005 GO:0007033 GO:0008104 GO:0008150 GO:0008152 GO:0008289 GO:0009056 GO:0009058 GO:0009059 GO:0009987 GO:0016020 GO:0016043 GO:0016236 GO:0019538 GO:0019898 GO:0022411 GO:0022607 GO:0032266 GO:0033036 GO:0034045 GO:0034497 GO:0034613 GO:0034645 GO:0035091 GO:0036211 GO:0042157 GO:0042158 GO:0043167 GO:0043168 GO:0043170 GO:0043412 GO:0044085 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044260 GO:0044267 GO:0044424 GO:0044425 GO:0044444 GO:0044464 GO:0044804 GO:0051179 GO:0051641 GO:0061726 GO:0061919 GO:0070727 GO:0070925 GO:0071704 GO:0071840 GO:0080025 GO:0098805 GO:1901564 GO:1901566 GO:1901576 GO:1901981 GO:1902936 GO:1903008 GO:1905037
PFAM: PF00400.35

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1393730	XP_013461473.1	97.831	415	9	0	1	415	1	415	0.0	850

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1393730	sp\|Q0WPK3\|AT18D_ARATH	74.227	388	89	2	27	414	10	386	0.0	597

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1393730	A0A072V2C7	97.831	415	9	0	1	415	1	415	0.0	850

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0002690	Msa1393730	-0.800409	1.461067e-48	-8.615850e-47
Msa0004180	Msa1393730	-0.841682	4.097790e-58	-8.615850e-47
Msa0018610	Msa1393730	-0.824508	7.769882e-54	-8.615850e-47
Msa0021240	Msa1393730	-0.806103	9.678120e-50	-8.615850e-47
Msa0021870	Msa1393730	0.814919	1.205292e-51	-8.615850e-47
Msa0024320	Msa1393730	-0.816135	6.463084e-52	-8.615850e-47
Msa0027020	Msa1393730	-0.825155	5.469810e-54	-8.615850e-47
Msa0027090	Msa1393730	-0.802960	4.376716e-49	-8.615850e-47
Msa0027120	Msa1393730	-0.816641	4.979412e-52	-8.615850e-47
Msa0028410	Msa1393730	-0.809503	1.832015e-50	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1393730	MtrunA17_Chr3g0128501	97.831	415	9	0	1	415	1	415	0.0	850
Msa1393730	MtrunA17_Chr1g0192081	58.313	403	138	7	16	414	4	380	6.92e-159	452
Msa1393730	MtrunA17_Chr1g0195841	51.811	359	171	2	57	414	5	362	7.21e-128	373
Msa1393730	MtrunA17_Chr7g0269031	55.155	194	69	5	223	413	141	319	4.79e-54	182
Msa1393730	MtrunA17_Chr7g0269031	35.096	208	106	5	60	254	71	262	6.44e-29	115
Msa1393730	MtrunA17_Chr4g0073441	34.317	271	165	5	55	314	15	283	1.10e-42	153

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1393730	AT3G56440.1	74.227	388	89	2	27	414	10	386	0.0	597
Msa1393730	AT2G40810.1	71.675	406	96	3	10	414	1	388	0.0	596
Msa1393730	AT2G40810.2	71.675	406	96	3	10	414	1	388	0.0	596
Msa1393730	AT3G56440.2	74.656	363	81	2	27	389	10	361	0.0	561
Msa1393730	AT3G56440.3	75.232	323	69	2	27	349	10	321	2.61e-177	498
Msa1393730	AT3G62770.1	57.323	396	145	5	23	414	45	420	1.35e-152	439
Msa1393730	AT3G62770.3	56.604	371	137	5	23	389	45	395	9.08e-140	405
Msa1393730	AT5G05150.1	47.666	407	164	5	10	413	1	361	7.03e-125	366
Msa1393730	AT2G40810.3	73.529	170	42	1	245	414	97	263	1.94e-82	254
Msa1393730	AT2G40810.3	53.333	120	40	2	10	128	1	105	9.43e-32	122

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Find 136 sgRNAs with CRISPR-Local

Find 334 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATTTATTGCTGGAAAGA+GGG	0.469548	tig0021758:+24302	Msa1393730:five_prime_UTR
AAAGAAAATCAAAATTGAAA+AGG	0.477518	tig0021758:+29095	Msa1393730:three_prime_UTR
AACAATCCTCCAACTGAGAT+GGG	0.460394	tig0021758:-29033	None:intergenic
AACCTTTCAAAGAGACTTTC+AGG	0.219715	tig0021758:+25825	Msa1393730:CDS
AACTTGAGAGTGAGGGTGTT+TGG	0.279915	tig0021758:+26996	Msa1393730:CDS
AACTTTATTGGGTGGATAGT+TGG	0.360324	tig0021758:-25933	None:intergenic
AAGAGTTTATTGCTTTGTGT+TGG	0.456916	tig0021758:-28986	None:intergenic
AAGATGAGGCCCCACTATTG+GGG	0.595901	tig0021758:-25676	None:intergenic
AATTGTGAATACCCCAATAG+TGG	0.458125	tig0021758:+25665	Msa1393730:CDS
ACAATCCTCCAACTGAGATG+GGG	0.616647	tig0021758:-29032	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TCATTATATGTTGGATTTCG+TGG	-	tig0021758:23906-23925	None:intergenic	30.0%
GAAGAAGAAGAAGAAGAATT+AGG	-	tig0021758:24017-24036	None:intergenic	30.0%
TATGTTGAAATTTCTGATCG+TGG	+	tig0021758:24255-24274	Msa1393730:intron	30.0%
ATGTTGAAATTTCTGATCGT+GGG	+	tig0021758:24256-24275	Msa1393730:intron	30.0%
CTGAAGTGAAAATTTATTGC+TGG	+	tig0021758:24294-24313	Msa1393730:five_prime_UTR	30.0%
GAAAATTTATTGCTGGAAAG+AGG	+	tig0021758:24301-24320	Msa1393730:five_prime_UTR	30.0%
ACTTACATAATGACATTGAC+AGG	-	tig0021758:24421-24440	None:intergenic	30.0%
CTGTGTGATACTTGTATAAA+TGG	+	tig0021758:24447-24466	Msa1393730:intron	30.0%
GGAAACAATGTTATCAATCA+TGG	+	tig0021758:24475-24494	Msa1393730:intron	30.0%
TCTGTACTAATGCACAATAA+CGG	+	tig0021758:24527-24546	Msa1393730:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
tig0021758	gene	23872	29264	23872	ID=Msa1393730;Name=Msa1393730
tig0021758	mRNA	23872	29264	23872	ID=Msa1393730-mRNA-1;Parent=Msa1393730;Name=Msa1393730-mRNA-1;_AED=0.01;_eAED=0.01;_QI=260\|1\|1\|1\|0.6\|0.5\|6\|360\|415
tig0021758	exon	23872	24043	23872	ID=Msa1393730-mRNA-1:exon:13954;Parent=Msa1393730-mRNA-1
tig0021758	exon	24289	24373	24289	ID=Msa1393730-mRNA-1:exon:13955;Parent=Msa1393730-mRNA-1
tig0021758	exon	25581	26369	25581	ID=Msa1393730-mRNA-1:exon:13956;Parent=Msa1393730-mRNA-1
tig0021758	exon	26894	27152	26894	ID=Msa1393730-mRNA-1:exon:13957;Parent=Msa1393730-mRNA-1
tig0021758	exon	27802	27925	27802	ID=Msa1393730-mRNA-1:exon:13958;Parent=Msa1393730-mRNA-1
tig0021758	exon	28826	29264	28826	ID=Msa1393730-mRNA-1:exon:13959;Parent=Msa1393730-mRNA-1
tig0021758	five_prime_UTR	23872	24043	23872	ID=Msa1393730-mRNA-1:five_prime_utr;Parent=Msa1393730-mRNA-1
tig0021758	five_prime_UTR	24289	24373	24289	ID=Msa1393730-mRNA-1:five_prime_utr;Parent=Msa1393730-mRNA-1
tig0021758	five_prime_UTR	25581	25583	25581	ID=Msa1393730-mRNA-1:five_prime_utr;Parent=Msa1393730-mRNA-1
tig0021758	CDS	25584	26369	25584	ID=Msa1393730-mRNA-1:cds;Parent=Msa1393730-mRNA-1
tig0021758	CDS	26894	27152	26894	ID=Msa1393730-mRNA-1:cds;Parent=Msa1393730-mRNA-1
tig0021758	CDS	27802	27925	27802	ID=Msa1393730-mRNA-1:cds;Parent=Msa1393730-mRNA-1
tig0021758	CDS	28826	28904	28826	ID=Msa1393730-mRNA-1:cds;Parent=Msa1393730-mRNA-1
tig0021758	three_prime_UTR	28905	29264	28905	ID=Msa1393730-mRNA-1:three_prime_utr;Parent=Msa1393730-mRNA-1

Gene Sequence

>Msa1393730

ATGCTGGCAGATTCCCCCTCATCTCATATCAATTCGTCTGTTTCAACATCTCAAGGAATATTTCCAAATTCAATGATCGGAAATTGTGAATACCCCAATAGTGGGGCCTCATCTTCTCTTTCCCGGCCAGATGCAGACATCAATGACAGTGATGAATCTGATTTGTTCTCAGTTTCATGGAATCAGGACTACGGTTGCTTAGCTGCTGGAACAAGTCATGGTTTTCGTATATATAATTGTGAACCTTTCAAAGAGACTTTCAGGCGTGATTTAAAAAGTGGCGGTTTTAAAATTGTAGAGATGCTGTTCCGTAGCAACATCCTAGCGCTTGTTGGTGCTGTAGCAAATTCCAACTATCCACCCAATAAAGTTTTGATTTGGGATGATCATCAGAGCAGGTGCATTGGTGAATTCACATTTAGATCTGAAGTTCGTGGAGTGAAATTAAGACGTGATCGAATTGTAGTTGTTCTTGAGCACAAGATATATGTTTATAACTTCATGGATTTGAAGCTTCTTCATCAAATTGATACTATGGCAAATCCTAGGGGGTTGTGCTGTCTTTCACACCATTCAAATACATTTGTTATGGCTTGTCCAGGTCGTCACAAAGGAGAAGTTCGAGTTGAACACTTTGGACTGAATGTCACAAAATTTATCAATGCCCATGATTCCCAAATTGCATGCTTCACTCTGACAACGGACGGGCTCCTTCTTGCAACTGCTAGTGAGAAGGGCACTCTGATTAGAATCTTCAATACAATGGATGGGTCTCGTTTACAAGAAGTTAGAAGAGGGGTGGATAGGGCTGAAATCAACAGTATAGCTCTGTCTCCCAATGTCCAGTGGTTGGCAGCATCAAGTGACAAAGGCACTGTTCATATATTCAACTTGAGAGTGAGGGTGTTTGGGGAGGATAGTGTAATACGCCCAACTGCTGTCCAAGGGCCTGTACTACTTCATCAGAATTCTTCAACTGCTTTAGATCCCTTGATTTCTCCAAATACCGGTGCCAACCCCAATTCATCATTATCTTTCATGAGAGGGGTTTTACCAAAATATTTTAGTTCAGAATGGTCATTTGCACAGTTCCACTTGCCTGAAAACACTAAATTCATTGTGGCATTTGGATCACAGAACACTGTCCTAATCTCTGGCATGGATGGAAGCTTTTACAAATGCAGCTTTGATCAAGTAAATGGGGGAGAGATGTTGCAGAAGGAGTATGTTCGCTTCCTAAAATGTTAA

Protein sequence

>Msa1393730

MLADSPSSHINSSVSTSQGIFPNSMIGNCEYPNSGASSSLSRPDADINDSDESDLFSVSWNQDYGCLAAGTSHGFRIYNCEPFKETFRRDLKSGGFKIVEMLFRSNILALVGAVANSNYPPNKVLIWDDHQSRCIGEFTFRSEVRGVKLRRDRIVVVLEHKIYVYNFMDLKLLHQIDTMANPRGLCCLSHHSNTFVMACPGRHKGEVRVEHFGLNVTKFINAHDSQIACFTLTTDGLLLATASEKGTLIRIFNTMDGSRLQEVRRGVDRAEINSIALSPNVQWLAASSDKGTVHIFNLRVRVFGEDSVIRPTAVQGPVLLHQNSSTALDPLISPNTGANPNSSLSFMRGVLPKYFSSEWSFAQFHLPENTKFIVAFGSQNTVLISGMDGSFYKCSFDQVNGGEMLQKEYVRFLKC*