AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0517200


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0517200 MtrunA17_Chr3g0128501 97.831 415 9 0 1 415 1 415 0.0 850
Msa0517200 MtrunA17_Chr1g0192081 58.313 403 138 7 16 414 4 380 6.92e-159 452
Msa0517200 MtrunA17_Chr1g0195841 51.811 359 171 2 57 414 5 362 7.21e-128 373
Msa0517200 MtrunA17_Chr7g0269031 55.155 194 69 5 223 413 141 319 4.79e-54 182
Msa0517200 MtrunA17_Chr7g0269031 35.096 208 106 5 60 254 71 262 6.44e-29 115
Msa0517200 MtrunA17_Chr4g0073441 34.317 271 165 5 55 314 15 283 1.10e-42 153
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0517200 AT3G56440.1 74.227 388 89 2 27 414 10 386 0.0 597
Msa0517200 AT2G40810.1 71.675 406 96 3 10 414 1 388 0.0 596
Msa0517200 AT2G40810.2 71.675 406 96 3 10 414 1 388 0.0 596
Msa0517200 AT3G56440.2 74.656 363 81 2 27 389 10 361 0.0 561
Msa0517200 AT3G56440.3 75.232 323 69 2 27 349 10 321 2.61e-177 498
Msa0517200 AT3G62770.1 57.323 396 145 5 23 414 45 420 1.35e-152 439
Msa0517200 AT3G62770.3 56.604 371 137 5 23 389 45 395 9.08e-140 405
Msa0517200 AT5G05150.1 47.666 407 164 5 10 413 1 361 7.03e-125 366
Msa0517200 AT2G40810.3 73.529 170 42 1 245 414 97 263 1.94e-82 254
Msa0517200 AT2G40810.3 53.333 120 40 2 10 128 1 105 9.43e-32 122
Msa0517200 AT4G30510.1 32.509 283 181 6 53 330 9 286 3.90e-38 141
Msa0517200 AT4G30510.2 32.766 235 150 5 101 330 1 232 3.02e-30 119

Find 136 sgRNAs with CRISPR-Local

Find 334 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAATTTCCGATCATTGAATT+TGG 0.146013 3_4:-68676639 None:intergenic
CATTCTGAACTAAAATATTT+TGG 0.153937 3_4:-68678802 None:intergenic
ATCCCAAATCAAAACTTTAT+TGG 0.177425 3_4:-68676937 None:intergenic
TTGGGGTTGGCACCGGTATT+TGG 0.187638 3_4:-68678099 None:intergenic
AACCTTTCAAAGAGACTTTC+AGG 0.219715 3_4:+68676817 Msa0517200:CDS
TGCAGCTTTGATCAAGTAAA+TGG 0.230085 3_4:+68679828 Msa0517200:CDS
AGAGACAGGAATTTGGAATT+TGG 0.237749 3_4:+68674949 Msa0517200:five_prime_UTR
CTGATTTGTTCTCAGTTTCA+TGG 0.238417 3_4:+68676733 Msa0517200:CDS
CAGAGAGAGAGACAGGAATT+TGG 0.240091 3_4:+68674942 Msa0517200:five_prime_UTR
ACTAAATTCATTGTGGCATT+TGG 0.273806 3_4:+68678856 Msa0517200:CDS
AACTTGAGAGTGAGGGTGTT+TGG 0.279915 3_4:+68677988 Msa0517200:CDS
TCTTCATCAAATTGATACTA+TGG 0.283426 3_4:+68677091 Msa0517200:CDS
TCAGAGTGAAGCATGCAATT+TGG 0.287147 3_4:-68677250 None:intergenic
TCCCAAATCAAAACTTTATT+GGG 0.292270 3_4:-68676936 None:intergenic
CATGAAAGATAATGATGAAT+TGG 0.295519 3_4:-68678118 None:intergenic
GATATATGTTTATAACTTCA+TGG 0.302452 3_4:+68677058 Msa0517200:CDS
ACTTGAGAGTGAGGGTGTTT+GGG 0.303097 3_4:+68677989 Msa0517200:CDS
CAGAGTGAAGCATGCAATTT+GGG 0.308247 3_4:-68677249 None:intergenic
GTTCTCAGTTTCATGGAATC+AGG 0.310536 3_4:+68676740 Msa0517200:CDS
CCATTCAAATACATTTGTTA+TGG 0.324119 3_4:+68677145 Msa0517200:CDS
CCTCTGCATATGAATATATA+TGG 0.330625 3_4:+68680194 Msa0517200:three_prime_UTR
AACTTTATTGGGTGGATAGT+TGG 0.360324 3_4:-68676925 None:intergenic
ATGAAAGATAATGATGAATT+GGG 0.360564 3_4:-68678117 None:intergenic
GAAAATTTATTGCTGGAAAG+AGG 0.362639 3_4:+68675296 Msa0517200:five_prime_UTR
GAAGATGAGGCCCCACTATT+GGG 0.364649 3_4:-68676669 None:intergenic
AGAAGATGAGGCCCCACTAT+TGG 0.366717 3_4:-68676670 None:intergenic
GGGCCTCATCTTCTCTTTCC+CGG 0.370929 3_4:+68676679 Msa0517200:CDS
CTGAAGTGAAAATTTATTGC+TGG 0.391736 3_4:+68675289 Msa0517200:five_prime_UTR
TCATTATATGTTGGATTTCG+TGG 0.394623 3_4:-68674898 None:intergenic
AGCATGCAATTTGGGAATCA+TGG 0.405618 3_4:-68677241 None:intergenic
GGTTAGAAGAGGGGTGGATA+GGG 0.417025 3_4:+68677885 Msa0517200:intron
CATCTCAGTTGGAGGATTGT+TGG 0.424111 3_4:+68680027 Msa0517200:three_prime_UTR
CACTTGATGCTGCCAACCAC+TGG 0.429688 3_4:-68677942 None:intergenic
TTGATACTATGGCAAATCCT+AGG 0.431047 3_4:+68677102 Msa0517200:CDS
GCAGCTTTGATCAAGTAAAT+GGG 0.450799 3_4:+68679829 Msa0517200:CDS
CTGTCATTGATGTCTGCATC+TGG 0.455833 3_4:-68676702 None:intergenic
AAGAGTTTATTGCTTTGTGT+TGG 0.456916 3_4:-68679978 None:intergenic
AGGTTAGAAGAGGGGTGGAT+AGG 0.457915 3_4:+68677884 Msa0517200:intron
AATTGTGAATACCCCAATAG+TGG 0.458125 3_4:+68676657 Msa0517200:CDS
TTCGTCATTTCATTATATGT+TGG 0.458601 3_4:-68674907 None:intergenic
AGAATCTTCAATACAATGGA+TGG 0.459968 3_4:+68677323 Msa0517200:CDS
AACAATCCTCCAACTGAGAT+GGG 0.460394 3_4:-68680025 None:intergenic
AAAATTTATTGCTGGAAAGA+GGG 0.469548 3_4:+68675297 Msa0517200:five_prime_UTR
ACCGGTATTTGGAGAAATCA+AGG 0.473373 3_4:-68678088 None:intergenic
AGCAACATCCTAGCGCTTGT+TGG 0.476042 3_4:+68676888 Msa0517200:CDS
AAAGAAAATCAAAATTGAAA+AGG 0.477518 3_4:+68680087 Msa0517200:three_prime_UTR
CAGGCCCTTGGACAGCAGTT+GGG 0.479532 3_4:-68678029 None:intergenic
CATTGATGTCTGCATCTGGC+CGG 0.479957 3_4:-68676698 None:intergenic
TATTTCGTTTGTAAATATTG+TGG 0.480557 3_4:+68680063 Msa0517200:three_prime_UTR
TTCCATCCATGCCAGAGATT+AGG 0.483661 3_4:-68678894 None:intergenic
TGAGAAACAGAGAGAGAGAC+AGG 0.486533 3_4:+68674935 Msa0517200:five_prime_UTR
GCTGCCAACCACTGGACATT+GGG 0.488358 3_4:-68677934 None:intergenic
GAAGTTCGAGTTGAACACTT+TGG 0.488765 3_4:+68677191 Msa0517200:CDS
ACATTTGTTATGGCTTGTCC+AGG 0.490027 3_4:+68677155 Msa0517200:CDS
TGATACTATGGCAAATCCTA+GGG 0.491747 3_4:+68677103 Msa0517200:CDS
CCCTTGATTTCTCCAAATAC+CGG 0.496555 3_4:+68678087 Msa0517200:CDS
GTCTCCCAATGTCCAGTGGT+TGG 0.498399 3_4:+68677930 Msa0517200:CDS
ACATTTAGATCTGAAGTTCG+TGG 0.499114 3_4:+68676990 Msa0517200:CDS
GTCCTAATCTCTGGCATGGA+TGG 0.500489 3_4:+68678892 Msa0517200:CDS
CCATAACAAATGTATTTGAA+TGG 0.510743 3_4:-68677145 None:intergenic
TTAGCTGCTGGAACAAGTCA+TGG 0.511790 3_4:+68676774 Msa0517200:CDS
CAACAATCCTCCAACTGAGA+TGG 0.513272 3_4:-68680026 None:intergenic
GAATTCTGATGAAGTAGTAC+AGG 0.516241 3_4:-68678048 None:intergenic
CGCCTGAAAGTCTCTTTGAA+AGG 0.516860 3_4:-68676819 None:intergenic
CAGAACACTGTCCTAATCTC+TGG 0.520013 3_4:+68678883 Msa0517200:CDS
TGCTTCACTCTGACAACGGA+CGG 0.522941 3_4:+68677260 Msa0517200:CDS
CTATCGTGTAGGTTAGAAGA+GGG 0.524773 3_4:+68677875 Msa0517200:intron
GCATGCAATTTGGGAATCAT+GGG 0.526357 3_4:-68677240 None:intergenic
CTAAAATGTTAAATTAAGCA+CGG 0.527344 3_4:+68679885 Msa0517200:exon
ACAGGCCCTTGGACAGCAGT+TGG 0.528221 3_4:-68678030 None:intergenic
TAAAATGTTAAATTAAGCAC+GGG 0.528454 3_4:+68679886 Msa0517200:exon
TCGTCTGTTTCAACATCTCA+AGG 0.528457 3_4:+68676609 Msa0517200:CDS
ATATTTCCAAATTCAATGAT+CGG 0.530341 3_4:+68676633 Msa0517200:CDS
CTTGCAACTGCTAGTGAGAA+GGG 0.530985 3_4:+68677290 Msa0517200:CDS
TGATGAATTGGGGTTGGCAC+CGG 0.533284 3_4:-68678106 None:intergenic
GACTACGGTTGCTTAGCTGC+TGG 0.535019 3_4:+68676762 Msa0517200:CDS
CAAATCAAAACTTTATTGGG+TGG 0.537171 3_4:-68676933 None:intergenic
GAAGAAGAAGAATTAGGGAT+CGG 0.539177 3_4:-68675003 None:intergenic
GATCATCAGAGCAGGTGCAT+TGG 0.542145 3_4:+68676960 Msa0517200:CDS
ATTGATGTCTGCATCTGGCC+GGG 0.542391 3_4:-68676697 None:intergenic
ATACGCCCAACTGCTGTCCA+AGG 0.547866 3_4:+68678024 Msa0517200:CDS
CTCTGTCTCCCAATGTCCAG+TGG 0.551409 3_4:+68677926 Msa0517200:CDS
TAATCTCTGGCATGGATGGA+AGG 0.552266 3_4:+68678896 Msa0517200:CDS
GCTTCACTCTGACAACGGAC+GGG 0.555040 3_4:+68677261 Msa0517200:CDS
ACTTCTCCTTTGTGACGACC+TGG 0.555547 3_4:-68677173 None:intergenic
GATGAAGTAGTACAGGCCCT+TGG 0.557475 3_4:-68678041 None:intergenic
TCTTGCAACTGCTAGTGAGA+AGG 0.557640 3_4:+68677289 Msa0517200:CDS
GAGAGTGAGGGTGTTTGGGG+AGG 0.558785 3_4:+68677993 Msa0517200:CDS
ATTGTGAATACCCCAATAGT+GGG 0.562593 3_4:+68676658 Msa0517200:CDS
CTTGAGAGTGAGGGTGTTTG+GGG 0.564799 3_4:+68677990 Msa0517200:CDS
ACTACAAGTCCTCGACGAGC+TGG 0.566326 3_4:+68679924 Msa0517200:three_prime_UTR
CGTGTAGGTTAGAAGAGGGG+TGG 0.568066 3_4:+68677879 Msa0517200:intron
GACGAATTGATATGAGATGA+GGG 0.569550 3_4:-68676591 None:intergenic
CACTGTCCTAATCTCTGGCA+TGG 0.571130 3_4:+68678888 Msa0517200:CDS
ACGAATTGATATGAGATGAG+GGG 0.571530 3_4:-68676590 None:intergenic
CTACAGCACCAACAAGCGCT+AGG 0.572951 3_4:-68676896 None:intergenic
TCATCATTATCTTTCATGAG+AGG 0.573870 3_4:+68678123 Msa0517200:CDS
TGCATGCTTCACTCTGACAA+CGG 0.580675 3_4:+68677256 Msa0517200:CDS
TGCTGCCAACCACTGGACAT+TGG 0.582381 3_4:-68677935 None:intergenic
GGGAATCATGTTTACATACA+AGG 0.584659 3_4:-68680003 None:intergenic
TTTGGGATGATCATCAGAGC+AGG 0.585812 3_4:+68676952 Msa0517200:CDS
CTTTGACTGATTGATTTCCA+CGG 0.585960 3_4:+68675347 Msa0517200:five_prime_UTR
GAATCTTCAATACAATGGAT+GGG 0.589619 3_4:+68677324 Msa0517200:CDS
ATATATTCAACTTGAGAGTG+AGG 0.590254 3_4:+68677980 Msa0517200:CDS
AGATAATGATGAATTGGGGT+TGG 0.592572 3_4:-68678112 None:intergenic
GTATAACTTGCACTATCATG+TGG 0.595356 3_4:+68680152 Msa0517200:three_prime_UTR
AAGATGAGGCCCCACTATTG+GGG 0.595901 3_4:-68676668 None:intergenic
TCTCACTAGCAGTTGCAAGA+AGG 0.597081 3_4:-68677286 None:intergenic
CGAATTGATATGAGATGAGG+GGG 0.598276 3_4:-68676589 None:intergenic
GATTAGAATCTTCAATACAA+TGG 0.601484 3_4:+68677319 Msa0517200:CDS
AGACGAATTGATATGAGATG+AGG 0.607029 3_4:-68676592 None:intergenic
TATATTCAACTTGAGAGTGA+GGG 0.607920 3_4:+68677981 Msa0517200:CDS
GATCGGAATGCAAAACGTGA+AGG 0.611307 3_4:-68674986 None:intergenic
TCTATCGTGTAGGTTAGAAG+AGG 0.613791 3_4:+68677874 Msa0517200:intron
CAGCTTTGATCAAGTAAATG+GGG 0.615526 3_4:+68679830 Msa0517200:CDS
ACAATCCTCCAACTGAGATG+GGG 0.616647 3_4:-68680024 None:intergenic
CAATCCTCCAACTGAGATGG+GGG 0.618630 3_4:-68680023 None:intergenic
TACGCCCAACTGCTGTCCAA+GGG 0.621281 3_4:+68678025 Msa0517200:CDS
GTTTCATGGAATCAGGACTA+CGG 0.621760 3_4:+68676747 Msa0517200:CDS
TGGCCGGGAAAGAGAAGATG+AGG 0.624207 3_4:-68676682 None:intergenic
TATAACTTGCACTATCATGT+GGG 0.628182 3_4:+68680153 Msa0517200:three_prime_UTR
TGAAAACACTAAATTCATTG+TGG 0.629098 3_4:+68678849 Msa0517200:CDS
GCTTGTCCAGGTCGTCACAA+AGG 0.632605 3_4:+68677167 Msa0517200:CDS
CCGGTATTTGGAGAAATCAA+GGG 0.637476 3_4:-68678087 None:intergenic
GGAGACATCATATTTACATG+TGG 0.642439 3_4:-68679957 None:intergenic
CAAGCGCTAGGATGTTGCTA+CGG 0.644150 3_4:-68676884 None:intergenic
TTATTGAGTGCAGAAAATGC+TGG 0.654198 3_4:+68676560 Msa0517200:intron
CCATATATATTCATATGCAG+AGG 0.659672 3_4:-68680194 None:intergenic
TTGGCAGCATCAAGTGACAA+AGG 0.665997 3_4:+68677949 Msa0517200:CDS
GATACTATGGCAAATCCTAG+GGG 0.691243 3_4:+68677104 Msa0517200:CDS
TGAAAGATAATGATGAATTG+GGG 0.693897 3_4:-68678116 None:intergenic
AGCTTTGATCAAGTAAATGG+GGG 0.695560 3_4:+68679831 Msa0517200:CDS
TATCGTGTAGGTTAGAAGAG+GGG 0.696069 3_4:+68677876 Msa0517200:intron
TTGTGAATACCCCAATAGTG+GGG 0.696105 3_4:+68676659 Msa0517200:CDS
GAAGAGTTTCCAGCTCGTCG+AGG 0.699537 3_4:-68679933 None:intergenic
ATACTATGGCAAATCCTAGG+GGG 0.718473 3_4:+68677105 Msa0517200:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TGTTTTTAAATAAATTTTAC+TGG - chr3_4:68675589-68675608 None:intergenic 10.0%
!! ATTTATTTAAAAACACGAAT+TGG + chr3_4:68675594-68675613 Msa0517200:intron 15.0%
!! TTTATTTAAAAACACGAATT+GGG + chr3_4:68675595-68675614 Msa0517200:intron 15.0%
!! CATATATATGAAGTAAATAA+TGG - chr3_4:68676004-68676023 None:intergenic 15.0%
!!! TATTTTCATATCTATATATG+AGG + chr3_4:68677450-68677469 Msa0517200:intron 15.0%
!! CAAATTATGATAATAATTTC+AGG - chr3_4:68678180-68678199 None:intergenic 15.0%
!! CTGAAATTATTATCATAATT+TGG + chr3_4:68678178-68678197 Msa0517200:intron 15.0%
!!! ATTTAATTTTTGAAAGAACA+GGG - chr3_4:68678968-68678987 None:intergenic 15.0%
!! GACAAATATTAATAAGTTAA+TGG + chr3_4:68679200-68679219 Msa0517200:intron 15.0%
!! GACAAATATTAATAAGTTAA+TGG + chr3_4:68679200-68679219 Msa0517200:intron 15.0%
!! AATCTTGACATTTATAATTA+TGG + chr3_4:68679440-68679459 Msa0517200:intron 15.0%
!!! ATCTGAAATATATTATTTTG+AGG - chr3_4:68679665-68679684 None:intergenic 15.0%
!! AAAGAAAATCAAAATTGAAA+AGG + chr3_4:68680087-68680106 Msa0517200:three_prime_UTR 15.0%
!! ATAAAAAACAAAATTGCGAT+GGG - chr3_4:68675153-68675172 None:intergenic 20.0%
!! TATAAAAAACAAAATTGCGA+TGG - chr3_4:68675154-68675173 None:intergenic 20.0%
!! AATGTAAAAAAATGTGATTG+AGG - chr3_4:68675383-68675402 None:intergenic 20.0%
!!! AAATAAATTTTACTGGCTTA+CGG - chr3_4:68675582-68675601 None:intergenic 20.0%
!!! ATTATTTCCAACAATTTTTG+TGG - chr3_4:68675633-68675652 None:intergenic 20.0%
!! TTTACAAACTCAAATTATAC+AGG - chr3_4:68676092-68676111 None:intergenic 20.0%
!! ATACACACACATATTTATAA+TGG + chr3_4:68676188-68676207 Msa0517200:intron 20.0%
!! CAATTCAAATTTCATAAGTT+TGG - chr3_4:68676274-68676293 None:intergenic 20.0%
!! ATATTTCCAAATTCAATGAT+CGG + chr3_4:68676633-68676652 Msa0517200:CDS 20.0%
!! GATATATGTTTATAACTTCA+TGG + chr3_4:68677058-68677077 Msa0517200:CDS 20.0%
!! GATATGAAAATAAAAAACCT+GGG - chr3_4:68677442-68677461 None:intergenic 20.0%
!! AGATATGAAAATAAAAAACC+TGG - chr3_4:68677443-68677462 None:intergenic 20.0%
!!! TTGTGAATTTTTTTATTGTG+TGG + chr3_4:68677601-68677620 Msa0517200:intron 20.0%
!! ATGAAAGATAATGATGAATT+GGG - chr3_4:68678120-68678139 None:intergenic 20.0%
!! ACCTAAAAACTATCTAAAAA+CGG - chr3_4:68678280-68678299 None:intergenic 20.0%
!! ACATAAAAAAGATCAAAAGT+AGG + chr3_4:68678405-68678424 Msa0517200:intron 20.0%
!! CATAAAAAAGATCAAAAGTA+GGG + chr3_4:68678406-68678425 Msa0517200:intron 20.0%
!!! TGTTTGTTTTATCATTCTTT+TGG + chr3_4:68678564-68678583 Msa0517200:intron 20.0%
!!! CATTCTGAACTAAAATATTT+TGG - chr3_4:68678805-68678824 None:intergenic 20.0%
!!! CAAAATATTTTAGTTCAGAA+TGG + chr3_4:68678803-68678822 Msa0517200:CDS 20.0%
!!! TTTAATTTTTGAAAGAACAG+GGG - chr3_4:68678967-68678986 None:intergenic 20.0%
!!! GATTTAATTTTTGAAAGAAC+AGG - chr3_4:68678969-68678988 None:intergenic 20.0%
!! CTTTCAAAAATTAAATCCTT+AGG + chr3_4:68678972-68678991 Msa0517200:intron 20.0%
!! TTTGAAAATGTAAAAACCTA+AGG - chr3_4:68678991-68679010 None:intergenic 20.0%
!!! TACATTTTCAAATAATGTTG+AGG + chr3_4:68678999-68679018 Msa0517200:intron 20.0%
!!! CTATTGAAATTATTGGTTTA+TGG + chr3_4:68679047-68679066 Msa0517200:intron 20.0%
!!! TAGAATACAATTTTACAATC+CGG + chr3_4:68679107-68679126 Msa0517200:intron 20.0%
!! AAAAATATCACATGATTCAA+TGG - chr3_4:68679133-68679152 None:intergenic 20.0%
!!! TTTGTTTGAAAGTATATTGT+TGG + chr3_4:68679400-68679419 Msa0517200:intron 20.0%
!!! AAGTTTTAATAGTTATTCAG+CGG + chr3_4:68679475-68679494 Msa0517200:intron 20.0%
!! CTAAAATGTTAAATTAAGCA+CGG + chr3_4:68679885-68679904 Msa0517200:exon 20.0%
!! TAAAATGTTAAATTAAGCAC+GGG + chr3_4:68679886-68679905 Msa0517200:exon 20.0%
!! TATTTCGTTTGTAAATATTG+TGG + chr3_4:68680063-68680082 Msa0517200:three_prime_UTR 20.0%
!!! GTCTTCTGTTTAATTTTTGT+CGG - chr3_4:68674879-68674898 None:intergenic 25.0%
! TTCGTCATTTCATTATATGT+TGG - chr3_4:68674910-68674929 None:intergenic 25.0%
! AAGAAGAAGAAGAAGAATTA+GGG - chr3_4:68675011-68675030 None:intergenic 25.0%
! AATCTTTAACAAAGAAAACG+AGG - chr3_4:68675206-68675225 None:intergenic 25.0%
! CAACATAGAAAAAAGCAAAA+AGG - chr3_4:68675237-68675256 None:intergenic 25.0%
! AAAATTTATTGCTGGAAAGA+GGG + chr3_4:68675297-68675316 Msa0517200:five_prime_UTR 25.0%
! TGTGTGATACTTGTATAAAT+GGG + chr3_4:68675440-68675459 Msa0517200:intron 25.0%
! ATACTTGTATAAATGGGAAT+TGG + chr3_4:68675446-68675465 Msa0517200:intron 25.0%
! TTGAAAAAGTGGAGTAAAAT+TGG + chr3_4:68675764-68675783 Msa0517200:intron 25.0%
! TTAAGTAATGTTCAATAGCT+AGG + chr3_4:68675804-68675823 Msa0517200:intron 25.0%
! TAAGTAATGTTCAATAGCTA+GGG + chr3_4:68675805-68675824 Msa0517200:intron 25.0%
! AACAGAAAATGCATAGAATT+AGG + chr3_4:68675861-68675880 Msa0517200:intron 25.0%
! TACAGGATACATAAATTCAT+GGG + chr3_4:68675896-68675915 Msa0517200:intron 25.0%
!!! ACCCAATAAAGTTTTGATTT+GGG + chr3_4:68676935-68676954 Msa0517200:CDS 25.0%
! TCCCAAATCAAAACTTTATT+GGG - chr3_4:68676939-68676958 None:intergenic 25.0%
! ATCCCAAATCAAAACTTTAT+TGG - chr3_4:68676940-68676959 None:intergenic 25.0%
! TCTTCATCAAATTGATACTA+TGG + chr3_4:68677091-68677110 Msa0517200:CDS 25.0%
! CCATAACAAATGTATTTGAA+TGG - chr3_4:68677148-68677167 None:intergenic 25.0%
!! CCATTCAAATACATTTGTTA+TGG + chr3_4:68677145-68677164 Msa0517200:CDS 25.0%
! GATTAGAATCTTCAATACAA+TGG + chr3_4:68677319-68677338 Msa0517200:CDS 25.0%
! TGGAAAGTTCAACATATTAA+TGG - chr3_4:68677402-68677421 None:intergenic 25.0%
! AAAATAAAAAACCTGGGAAA+TGG - chr3_4:68677436-68677455 None:intergenic 25.0%
! TTTCATATCTATATATGAGG+TGG + chr3_4:68677453-68677472 Msa0517200:intron 25.0%
!! TGAAAATGTTTTACTTGACT+TGG - chr3_4:68677578-68677597 None:intergenic 25.0%
! TTTAAGAATGATCAAGAATC+AGG - chr3_4:68677633-68677652 None:intergenic 25.0%
!! ACAATTTTCTTTGCATCTTT+TGG + chr3_4:68677668-68677687 Msa0517200:intron 25.0%
!! GCTAAAACATTGTTATTGTA+AGG - chr3_4:68677700-68677719 None:intergenic 25.0%
! TGAAAGATAATGATGAATTG+GGG - chr3_4:68678119-68678138 None:intergenic 25.0%
! CATGAAAGATAATGATGAAT+TGG - chr3_4:68678121-68678140 None:intergenic 25.0%
! AAGTATTTGAATTGGTAAAC+TGG - chr3_4:68678226-68678245 None:intergenic 25.0%
!!! TTTTTAGGTCTTCATCATTT+AGG + chr3_4:68678291-68678310 Msa0517200:intron 25.0%
!! TGCTCTATTAGATTTACTTT+TGG + chr3_4:68678463-68678482 Msa0517200:intron 25.0%
!! AATCAATGATTTTGCACATT+AGG + chr3_4:68678539-68678558 Msa0517200:intron 25.0%
! TAGTAGAACCCATATATTTA+TGG + chr3_4:68678656-68678675 Msa0517200:intron 25.0%
! GAGAACATCCATAAATATAT+GGG - chr3_4:68678667-68678686 None:intergenic 25.0%
! AGAGAACATCCATAAATATA+TGG - chr3_4:68678668-68678687 None:intergenic 25.0%
!!! TTGTTAGCTTACTTTTAAGA+TGG + chr3_4:68678702-68678721 Msa0517200:intron 25.0%
!! GGAAAATTGCATGATATTTT+TGG + chr3_4:68678723-68678742 Msa0517200:intron 25.0%
!! ACAATGAATTTAGTGTTTTC+AGG - chr3_4:68678850-68678869 None:intergenic 25.0%
! TGAAAACACTAAATTCATTG+TGG + chr3_4:68678849-68678868 Msa0517200:CDS 25.0%
!!! TTAATTTTTGAAAGAACAGG+GGG - chr3_4:68678966-68678985 None:intergenic 25.0%
! TTGCATGCTATTGAAATTAT+TGG + chr3_4:68679040-68679059 Msa0517200:intron 25.0%
! TAGATTCAAATGTCTCAATT+AGG - chr3_4:68679357-68679376 None:intergenic 25.0%
!! TTTGAAAGTATATTGTTGGA+TGG + chr3_4:68679404-68679423 Msa0517200:intron 25.0%
! TGAAAACAAATTACACATGT+GGG - chr3_4:68679522-68679541 None:intergenic 25.0%
! TTGAAAACAAATTACACATG+TGG - chr3_4:68679523-68679542 None:intergenic 25.0%
! GAAATTAATGTATCCTTTGT+AGG + chr3_4:68679693-68679712 Msa0517200:intron 25.0%
!!! TGTTTCTTTTTTTCCTACAA+AGG - chr3_4:68679709-68679728 None:intergenic 25.0%
! CAAAAAACAAGTTGTATGTA+AGG - chr3_4:68679792-68679811 None:intergenic 25.0%
!! CGTGCTTAATTTAACATTTT+AGG - chr3_4:68679887-68679906 None:intergenic 25.0%
!! TTCTGTTTAATTTTTGTCGG+AGG - chr3_4:68674876-68674895 None:intergenic 30.0%
TCATTATATGTTGGATTTCG+TGG - chr3_4:68674901-68674920 None:intergenic 30.0%
GAAGAAGAAGAAGAAGAATT+AGG - chr3_4:68675012-68675031 None:intergenic 30.0%
TATGTTGAAATTTCTGATCG+TGG + chr3_4:68675250-68675269 Msa0517200:intron 30.0%
ATGTTGAAATTTCTGATCGT+GGG + chr3_4:68675251-68675270 Msa0517200:intron 30.0%
CTGAAGTGAAAATTTATTGC+TGG + chr3_4:68675289-68675308 Msa0517200:five_prime_UTR 30.0%
GAAAATTTATTGCTGGAAAG+AGG + chr3_4:68675296-68675315 Msa0517200:five_prime_UTR 30.0%
ACTTACATAATGACATTGAC+AGG - chr3_4:68675416-68675435 None:intergenic 30.0%
CTGTGTGATACTTGTATAAA+TGG + chr3_4:68675439-68675458 Msa0517200:intron 30.0%
GGAAACAATGTTATCAATCA+TGG + chr3_4:68675467-68675486 Msa0517200:intron 30.0%
TCTGTACTAATGCACAATAA+CGG + chr3_4:68675519-68675538 Msa0517200:intron 30.0%
! CTCAAAGTATTAAGTGATGT+AGG - chr3_4:68675723-68675742 None:intergenic 30.0%
CTACATCACTTAATACTTTG+AGG + chr3_4:68675721-68675740 Msa0517200:intron 30.0%
!!! TCCACTTTTTCAAGCAATTA+TGG - chr3_4:68675757-68675776 None:intergenic 30.0%
TGGAGTAAAATTGGAATTGT+TGG + chr3_4:68675773-68675792 Msa0517200:intron 30.0%
AAGTAATGTTCAATAGCTAG+GGG + chr3_4:68675806-68675825 Msa0517200:intron 30.0%
AGAAAATGCATAGAATTAGG+AGG + chr3_4:68675864-68675883 Msa0517200:intron 30.0%
CTACAGGATACATAAATTCA+TGG + chr3_4:68675895-68675914 Msa0517200:intron 30.0%
CACAGTTAAATTCATTGGTA+GGG - chr3_4:68675937-68675956 None:intergenic 30.0%
!!! TTTTAATTTTCATTGCCTCG+TGG + chr3_4:68675968-68675987 Msa0517200:intron 30.0%
TTGAATTGCTAAACATCTTG+TGG + chr3_4:68676286-68676305 Msa0517200:intron 30.0%
CTAACTCAAACAAGTGAAAA+GGG - chr3_4:68676331-68676350 None:intergenic 30.0%
ACTAACTCAAACAAGTGAAA+AGG - chr3_4:68676332-68676351 None:intergenic 30.0%
CAATTTCCGATCATTGAATT+TGG - chr3_4:68676642-68676661 None:intergenic 30.0%
CAAATCAAAACTTTATTGGG+TGG - chr3_4:68676936-68676955 None:intergenic 30.0%
!!! CACCCAATAAAGTTTTGATT+TGG + chr3_4:68676934-68676953 Msa0517200:CDS 30.0%
AGAATCTTCAATACAATGGA+TGG + chr3_4:68677323-68677342 Msa0517200:CDS 30.0%
GAATCTTCAATACAATGGAT+GGG + chr3_4:68677324-68677343 Msa0517200:CDS 30.0%
GGGAAATGGAAAATATGAAA+TGG - chr3_4:68677422-68677441 None:intergenic 30.0%
! TTTCATATTTTCCATTTCCC+AGG + chr3_4:68677422-68677441 Msa0517200:intron 30.0%
! ATTTTCTTTGCATCTTTTGG+AGG + chr3_4:68677671-68677690 Msa0517200:intron 30.0%
AAGATCAAACTGAATCCTAT+TGG - chr3_4:68677816-68677835 None:intergenic 30.0%
GATTATTGAACACGAAAAGA+GGG - chr3_4:68677848-68677867 None:intergenic 30.0%
!! AATCGATTTTTCTATCGTGT+AGG + chr3_4:68677864-68677883 Msa0517200:intron 30.0%
ATATATTCAACTTGAGAGTG+AGG + chr3_4:68677980-68677999 Msa0517200:CDS 30.0%
TATATTCAACTTGAGAGTGA+GGG + chr3_4:68677981-68678000 Msa0517200:CDS 30.0%
TCATCATTATCTTTCATGAG+AGG + chr3_4:68678123-68678142 Msa0517200:CDS 30.0%
!!! GCCGTTTTTAGATAGTTTTT+AGG + chr3_4:68678276-68678295 Msa0517200:intron 30.0%
TCATCATTTAGGAAACTTGA+TGG + chr3_4:68678302-68678321 Msa0517200:intron 30.0%
TTCATAAAAACAGGAGACTT+CGG - chr3_4:68678360-68678379 None:intergenic 30.0%
!! ATTTACTTTTGGATTTGTGC+AGG + chr3_4:68678474-68678493 Msa0517200:intron 30.0%
!! TTTACTTTTGGATTTGTGCA+GGG + chr3_4:68678475-68678494 Msa0517200:intron 30.0%
!!! TTTTGGTTTATGAGTTATCC+AGG + chr3_4:68678581-68678600 Msa0517200:intron 30.0%
GATGTTATTACATGCTTGAA+AGG - chr3_4:68678633-68678652 None:intergenic 30.0%
ATTGTTTCCAGAGAGAAAAT+AGG - chr3_4:68678770-68678789 None:intergenic 30.0%
ACTAAATTCATTGTGGCATT+TGG + chr3_4:68678856-68678875 Msa0517200:CDS 30.0%
CTCTCTTCATTTAATGAACT+TGG + chr3_4:68679747-68679766 Msa0517200:intron 30.0%
AAGAGTTTATTGCTTTGTGT+TGG - chr3_4:68679981-68680000 None:intergenic 30.0%
! TATAACTTGCACTATCATGT+GGG + chr3_4:68680153-68680172 Msa0517200:three_prime_UTR 30.0%
CCATATATATTCATATGCAG+AGG - chr3_4:68680197-68680216 None:intergenic 30.0%
CCTCTGCATATGAATATATA+TGG + chr3_4:68680194-68680213 Msa0517200:three_prime_UTR 30.0%
! AGAGACAGGAATTTGGAATT+TGG + chr3_4:68674949-68674968 Msa0517200:five_prime_UTR 35.0%
GAAGAAGAAGAATTAGGGAT+CGG - chr3_4:68675006-68675025 None:intergenic 35.0%
! CTTTGACTGATTGATTTCCA+CGG + chr3_4:68675347-68675366 Msa0517200:five_prime_UTR 35.0%
AAAATGTGATTGAGGCAAGA+GGG - chr3_4:68675375-68675394 None:intergenic 35.0%
AAAAATGTGATTGAGGCAAG+AGG - chr3_4:68675376-68675395 None:intergenic 35.0%
CCTATAGTGTTATAGCTTAG+CGG - chr3_4:68675557-68675576 None:intergenic 35.0%
! GCATTGACCACAAAAATTGT+TGG + chr3_4:68675623-68675642 Msa0517200:intron 35.0%
GCCATAATTGCTTGAAAAAG+TGG + chr3_4:68675753-68675772 Msa0517200:intron 35.0%
! AATTGGAATTGTTGGCTGTT+AGG + chr3_4:68675781-68675800 Msa0517200:intron 35.0%
GCACAGTTAAATTCATTGGT+AGG - chr3_4:68675938-68675957 None:intergenic 35.0%
TGCAGCACAGTTAAATTCAT+TGG - chr3_4:68675942-68675961 None:intergenic 35.0%
TGTTATCTAGAGAATGAGAC+AGG + chr3_4:68676025-68676044 Msa0517200:intron 35.0%
TCTTCAACACATGAAATGAC+TGG + chr3_4:68676370-68676389 Msa0517200:intron 35.0%
! GCATTTTCTGCACTCAATAA+CGG - chr3_4:68676560-68676579 None:intergenic 35.0%
TTATTGAGTGCAGAAAATGC+TGG + chr3_4:68676560-68676579 Msa0517200:intron 35.0%
ACGAATTGATATGAGATGAG+GGG - chr3_4:68676593-68676612 None:intergenic 35.0%
GACGAATTGATATGAGATGA+GGG - chr3_4:68676594-68676613 None:intergenic 35.0%
AGACGAATTGATATGAGATG+AGG - chr3_4:68676595-68676614 None:intergenic 35.0%
AATTGTGAATACCCCAATAG+TGG + chr3_4:68676657-68676676 Msa0517200:CDS 35.0%
ATTGTGAATACCCCAATAGT+GGG + chr3_4:68676658-68676677 Msa0517200:CDS 35.0%
!! CTGATTTGTTCTCAGTTTCA+TGG + chr3_4:68676733-68676752 Msa0517200:CDS 35.0%
AACCTTTCAAAGAGACTTTC+AGG + chr3_4:68676817-68676836 Msa0517200:CDS 35.0%
TTCAGGCGTGATTTAAAAAG+TGG + chr3_4:68676834-68676853 Msa0517200:CDS 35.0%
AACTTTATTGGGTGGATAGT+TGG - chr3_4:68676928-68676947 None:intergenic 35.0%
! ACATTTAGATCTGAAGTTCG+TGG + chr3_4:68676990-68677009 Msa0517200:CDS 35.0%
TTGATACTATGGCAAATCCT+AGG + chr3_4:68677102-68677121 Msa0517200:CDS 35.0%
TGATACTATGGCAAATCCTA+GGG + chr3_4:68677103-68677122 Msa0517200:CDS 35.0%
! TTTTACGCCTCAACATTCTT+GGG + chr3_4:68677756-68677775 Msa0517200:intron 35.0%
AAGTGGAACTTCTTTCCAAT+AGG + chr3_4:68677798-68677817 Msa0517200:intron 35.0%
CGATTATTGAACACGAAAAG+AGG - chr3_4:68677849-68677868 None:intergenic 35.0%
GAATTCTGATGAAGTAGTAC+AGG - chr3_4:68678051-68678070 None:intergenic 35.0%
AGATAATGATGAATTGGGGT+TGG - chr3_4:68678115-68678134 None:intergenic 35.0%
GGTAAACTGGAAAAGATGAT+TGG - chr3_4:68678213-68678232 None:intergenic 35.0%
AGCTGGCTAAGTATTTGAAT+TGG - chr3_4:68678234-68678253 None:intergenic 35.0%
! TCATGTAAGATGATTTGTGC+AGG - chr3_4:68678519-68678538 None:intergenic 35.0%
ATCAAAGATGTAATGCTACC+TGG - chr3_4:68678602-68678621 None:intergenic 35.0%
! GTTCTTACCTATTTTCTCTC+TGG + chr3_4:68678760-68678779 Msa0517200:intron 35.0%
!! ATTTAGTGTTTTCAGGCAAG+TGG - chr3_4:68678843-68678862 None:intergenic 35.0%
!! TTATTGGTTTATGGTGATCC+AGG + chr3_4:68679056-68679075 Msa0517200:intron 35.0%
ATATCACATGATTCAATGGC+CGG - chr3_4:68679129-68679148 None:intergenic 35.0%
TTAAGCTGTATGTCTACAGT+TGG - chr3_4:68679300-68679319 None:intergenic 35.0%
ACAAGTTGTATGTAAGGATG+AGG - chr3_4:68679786-68679805 None:intergenic 35.0%
! TGCAGCTTTGATCAAGTAAA+TGG + chr3_4:68679828-68679847 Msa0517200:CDS 35.0%
! GCAGCTTTGATCAAGTAAAT+GGG + chr3_4:68679829-68679848 Msa0517200:CDS 35.0%
! CAGCTTTGATCAAGTAAATG+GGG + chr3_4:68679830-68679849 Msa0517200:CDS 35.0%
! AGCTTTGATCAAGTAAATGG+GGG + chr3_4:68679831-68679850 Msa0517200:CDS 35.0%
GGAGACATCATATTTACATG+TGG - chr3_4:68679960-68679979 None:intergenic 35.0%
GGGAATCATGTTTACATACA+AGG - chr3_4:68680006-68680025 None:intergenic 35.0%
! GTATAACTTGCACTATCATG+TGG + chr3_4:68680152-68680171 Msa0517200:three_prime_UTR 35.0%
TTCTTCTTCTTCTTCATCCC+TGG + chr3_4:68675017-68675036 Msa0517200:five_prime_UTR 40.0%
AGAAAACGAGGAAATGAAGC+AGG - chr3_4:68675194-68675213 None:intergenic 40.0%
CCGCTAAGCTATAACACTAT+AGG + chr3_4:68675554-68675573 Msa0517200:intron 40.0%
! TAATTTTCATTGCCTCGTGG+AGG + chr3_4:68675971-68675990 Msa0517200:intron 40.0%
TCTAGAGAATGAGACAGGAA+AGG + chr3_4:68676030-68676049 Msa0517200:intron 40.0%
GAAAAGGGATTCAACAGGAA+TGG - chr3_4:68676316-68676335 None:intergenic 40.0%
CAAGTGAAAAGGGATTCAAC+AGG - chr3_4:68676321-68676340 None:intergenic 40.0%
AATGTTCCATTAACAGTGCC+TGG + chr3_4:68676402-68676421 Msa0517200:intron 40.0%
! AATAACGGTGAAGTGTCAGA+AGG - chr3_4:68676545-68676564 None:intergenic 40.0%
CGAATTGATATGAGATGAGG+GGG - chr3_4:68676592-68676611 None:intergenic 40.0%
TCGTCTGTTTCAACATCTCA+AGG + chr3_4:68676609-68676628 Msa0517200:CDS 40.0%
TTGTGAATACCCCAATAGTG+GGG + chr3_4:68676659-68676678 Msa0517200:CDS 40.0%
GTTCTCAGTTTCATGGAATC+AGG + chr3_4:68676740-68676759 Msa0517200:CDS 40.0%
GTTTCATGGAATCAGGACTA+CGG + chr3_4:68676747-68676766 Msa0517200:CDS 40.0%
AGGCGTGATTTAAAAAGTGG+CGG + chr3_4:68676837-68676856 Msa0517200:CDS 40.0%
GATACTATGGCAAATCCTAG+GGG + chr3_4:68677104-68677123 Msa0517200:CDS 40.0%
ATACTATGGCAAATCCTAGG+GGG + chr3_4:68677105-68677124 Msa0517200:CDS 40.0%
!! ACATTTGTTATGGCTTGTCC+AGG + chr3_4:68677155-68677174 Msa0517200:CDS 40.0%
!! GAAGTTCGAGTTGAACACTT+TGG + chr3_4:68677191-68677210 Msa0517200:CDS 40.0%
GCATGCAATTTGGGAATCAT+GGG - chr3_4:68677243-68677262 None:intergenic 40.0%
AGCATGCAATTTGGGAATCA+TGG - chr3_4:68677244-68677263 None:intergenic 40.0%
CAGAGTGAAGCATGCAATTT+GGG - chr3_4:68677252-68677271 None:intergenic 40.0%
TCAGAGTGAAGCATGCAATT+TGG - chr3_4:68677253-68677272 None:intergenic 40.0%
! CTTTTACGCCTCAACATTCT+TGG + chr3_4:68677755-68677774 Msa0517200:intron 40.0%
TTCCACTTCCAAAACTATCG+TGG - chr3_4:68677786-68677805 None:intergenic 40.0%
TCTATCGTGTAGGTTAGAAG+AGG + chr3_4:68677874-68677893 Msa0517200:intron 40.0%
CTATCGTGTAGGTTAGAAGA+GGG + chr3_4:68677875-68677894 Msa0517200:intron 40.0%
TATCGTGTAGGTTAGAAGAG+GGG + chr3_4:68677876-68677895 Msa0517200:intron 40.0%
CCGGTATTTGGAGAAATCAA+GGG - chr3_4:68678090-68678109 None:intergenic 40.0%
CCCTTGATTTCTCCAAATAC+CGG + chr3_4:68678087-68678106 Msa0517200:CDS 40.0%
ACCGGTATTTGGAGAAATCA+AGG - chr3_4:68678091-68678110 None:intergenic 40.0%
TTCAAATACTTAGCCAGCTC+AGG + chr3_4:68678235-68678254 Msa0517200:intron 40.0%
TCAAATACTTAGCCAGCTCA+GGG + chr3_4:68678236-68678255 Msa0517200:intron 40.0%
CCAGCACAGTTCATAAAAAC+AGG - chr3_4:68678369-68678388 None:intergenic 40.0%
!!! CCTGTTTTTATGAACTGTGC+TGG + chr3_4:68678366-68678385 Msa0517200:intron 40.0%
! TTTCTCTCTGGAAACAATGC+AGG + chr3_4:68678772-68678791 Msa0517200:intron 40.0%
! TTCTCTCTGGAAACAATGCA+GGG + chr3_4:68678773-68678792 Msa0517200:intron 40.0%
GTAGCTTGATTGCGAGTTAA+GGG - chr3_4:68679335-68679354 None:intergenic 40.0%
AACAATCCTCCAACTGAGAT+GGG - chr3_4:68680028-68680047 None:intergenic 40.0%
TGAGAAACAGAGAGAGAGAC+AGG + chr3_4:68674935-68674954 Msa0517200:five_prime_UTR 45.0%
CAGAGAGAGAGACAGGAATT+TGG + chr3_4:68674942-68674961 Msa0517200:five_prime_UTR 45.0%
GATCGGAATGCAAAACGTGA+AGG - chr3_4:68674989-68675008 None:intergenic 45.0%
GGGAAAGAGTCAAAGAGGAA+AGG - chr3_4:68675133-68675152 None:intergenic 45.0%
TGTTCAATAGCTAGGGGTTC+TGG + chr3_4:68675812-68675831 Msa0517200:intron 45.0%
TTAGGAGGAGTTGCAACTAC+AGG + chr3_4:68675879-68675898 Msa0517200:intron 45.0%
!! AATGGATTGTTTCCTCCACG+AGG - chr3_4:68675986-68676005 None:intergenic 45.0%
GCTGCAGAAGTAGTACAAAG+CGG + chr3_4:68676058-68676077 Msa0517200:intron 45.0%
CTGCAGAAGTAGTACAAAGC+GGG + chr3_4:68676059-68676078 Msa0517200:intron 45.0%
! GAATTGCCAGGCACTGTTAA+TGG - chr3_4:68676411-68676430 None:intergenic 45.0%
CTGTCATTGATGTCTGCATC+TGG - chr3_4:68676705-68676724 None:intergenic 45.0%
TTAGCTGCTGGAACAAGTCA+TGG + chr3_4:68676774-68676793 Msa0517200:CDS 45.0%
CGCCTGAAAGTCTCTTTGAA+AGG - chr3_4:68676822-68676841 None:intergenic 45.0%
! TTTGGGATGATCATCAGAGC+AGG + chr3_4:68676952-68676971 Msa0517200:CDS 45.0%
TGCATGCTTCACTCTGACAA+CGG + chr3_4:68677256-68677275 Msa0517200:CDS 45.0%
TCTCACTAGCAGTTGCAAGA+AGG - chr3_4:68677289-68677308 None:intergenic 45.0%
TCTTGCAACTGCTAGTGAGA+AGG + chr3_4:68677289-68677308 Msa0517200:CDS 45.0%
CTTGCAACTGCTAGTGAGAA+GGG + chr3_4:68677290-68677309 Msa0517200:CDS 45.0%
GGGTCTCGTTTACAAGAAGT+AGG + chr3_4:68677344-68677363 Msa0517200:intron 45.0%
TGGACAACCCAAGAATGTTG+AGG - chr3_4:68677766-68677785 None:intergenic 45.0%
! TGGGTTGTCCACGATAGTTT+TGG + chr3_4:68677775-68677794 Msa0517200:intron 45.0%
!!! GTCCACGATAGTTTTGGAAG+TGG + chr3_4:68677781-68677800 Msa0517200:intron 45.0%
TTGGCAGCATCAAGTGACAA+AGG + chr3_4:68677949-68677968 Msa0517200:CDS 45.0%
!! AACTTGAGAGTGAGGGTGTT+TGG + chr3_4:68677988-68678007 Msa0517200:CDS 45.0%
!! ACTTGAGAGTGAGGGTGTTT+GGG + chr3_4:68677989-68678008 Msa0517200:CDS 45.0%
TCAGGTGCTCTGCATTACAA+AGG - chr3_4:68678162-68678181 None:intergenic 45.0%
CATAATATAGCTCCCTGAGC+TGG - chr3_4:68678251-68678270 None:intergenic 45.0%
! TCTCTCTGGAAACAATGCAG+GGG + chr3_4:68678774-68678793 Msa0517200:intron 45.0%
CAGAACACTGTCCTAATCTC+TGG + chr3_4:68678883-68678902 Msa0517200:CDS 45.0%
TTCCATCCATGCCAGAGATT+AGG - chr3_4:68678897-68678916 None:intergenic 45.0%
TAATCTCTGGCATGGATGGA+AGG + chr3_4:68678896-68678915 Msa0517200:CDS 45.0%
TCAATTATACAAGCCCAGCC+TGG - chr3_4:68679077-68679096 None:intergenic 45.0%
GGTAGCTTGATTGCGAGTTA+AGG - chr3_4:68679336-68679355 None:intergenic 45.0%
ACAATCCTCCAACTGAGATG+GGG - chr3_4:68680027-68680046 None:intergenic 45.0%
CAACAATCCTCCAACTGAGA+TGG - chr3_4:68680029-68680048 None:intergenic 45.0%
CATCTCAGTTGGAGGATTGT+TGG + chr3_4:68680027-68680046 Msa0517200:three_prime_UTR 45.0%
! CTTCTTCATCCCTGGTAACG+CGG + chr3_4:68675025-68675044 Msa0517200:intron 50.0%
TTGCGTAAACCGCGTTACCA+GGG - chr3_4:68675037-68675056 None:intergenic 50.0%
ATTGCGTAAACCGCGTTACC+AGG - chr3_4:68675038-68675057 None:intergenic 50.0%
GCGATGGGAAAGAGTCAAAG+AGG - chr3_4:68675138-68675157 None:intergenic 50.0%
! TCAATAGCTAGGGGTTCTGG+TGG + chr3_4:68675815-68675834 Msa0517200:intron 50.0%
! ATGCTTGCTTGTTGCAGCCT+GGG - chr3_4:68676453-68676472 None:intergenic 50.0%
AAGATGAGGCCCCACTATTG+GGG - chr3_4:68676671-68676690 None:intergenic 50.0%
GAAGATGAGGCCCCACTATT+GGG - chr3_4:68676672-68676691 None:intergenic 50.0%
AGAAGATGAGGCCCCACTAT+TGG - chr3_4:68676673-68676692 None:intergenic 50.0%
ATTGATGTCTGCATCTGGCC+GGG - chr3_4:68676700-68676719 None:intergenic 50.0%
CATTGATGTCTGCATCTGGC+CGG - chr3_4:68676701-68676720 None:intergenic 50.0%
CAAGCGCTAGGATGTTGCTA+CGG - chr3_4:68676887-68676906 None:intergenic 50.0%
AGCAACATCCTAGCGCTTGT+TGG + chr3_4:68676888-68676907 Msa0517200:CDS 50.0%
GATCATCAGAGCAGGTGCAT+TGG + chr3_4:68676960-68676979 Msa0517200:CDS 50.0%
ACTTCTCCTTTGTGACGACC+TGG - chr3_4:68677176-68677195 None:intergenic 50.0%
TGCTTCACTCTGACAACGGA+CGG + chr3_4:68677260-68677279 Msa0517200:CDS 50.0%
AGGTTAGAAGAGGGGTGGAT+AGG + chr3_4:68677884-68677903 Msa0517200:intron 50.0%
GGTTAGAAGAGGGGTGGATA+GGG + chr3_4:68677885-68677904 Msa0517200:intron 50.0%
!! CTTGAGAGTGAGGGTGTTTG+GGG + chr3_4:68677990-68678009 Msa0517200:CDS 50.0%
GATGAAGTAGTACAGGCCCT+TGG - chr3_4:68678044-68678063 None:intergenic 50.0%
! TGATGAATTGGGGTTGGCAC+CGG - chr3_4:68678109-68678128 None:intergenic 50.0%
CACTGTCCTAATCTCTGGCA+TGG + chr3_4:68678888-68678907 Msa0517200:CDS 50.0%
GTCCTAATCTCTGGCATGGA+TGG + chr3_4:68678892-68678911 Msa0517200:CDS 50.0%
TGGTTTATGGTGATCCAGGC+TGG + chr3_4:68679060-68679079 Msa0517200:intron 50.0%
GGTTTATGGTGATCCAGGCT+GGG + chr3_4:68679061-68679080 Msa0517200:intron 50.0%
TCAACTGCAAAGCATGCGTG+AGG - chr3_4:68679620-68679639 None:intergenic 50.0%
CATGATTCCCCCATCTCAGT+TGG + chr3_4:68680016-68680035 Msa0517200:three_prime_UTR 50.0%
CAATCCTCCAACTGAGATGG+GGG - chr3_4:68680026-68680045 None:intergenic 50.0%
!! ATTGAGGCAAGAGGGTACCG+TGG - chr3_4:68675367-68675386 None:intergenic 55.0%
! AGGGGTTCTGGTGGTAGTAG+TGG + chr3_4:68675824-68675843 Msa0517200:intron 55.0%
AGTAGCAGGAGGGAATTGCC+AGG - chr3_4:68676423-68676442 None:intergenic 55.0%
GGGGGATGAAAGTAGCAGGA+GGG - chr3_4:68676433-68676452 None:intergenic 55.0%
TGGGGGATGAAAGTAGCAGG+AGG - chr3_4:68676434-68676453 None:intergenic 55.0%
!! TCCTGCTACTTTCATCCCCC+AGG + chr3_4:68676433-68676452 Msa0517200:intron 55.0%
! TGCTTGCTTGTTGCAGCCTG+GGG - chr3_4:68676452-68676471 None:intergenic 55.0%
! CATGCTTGCTTGTTGCAGCC+TGG - chr3_4:68676454-68676473 None:intergenic 55.0%
GGGCCTCATCTTCTCTTTCC+CGG + chr3_4:68676679-68676698 Msa0517200:CDS 55.0%
TGGCCGGGAAAGAGAAGATG+AGG - chr3_4:68676685-68676704 None:intergenic 55.0%
GACTACGGTTGCTTAGCTGC+TGG + chr3_4:68676762-68676781 Msa0517200:CDS 55.0%
CTACAGCACCAACAAGCGCT+AGG - chr3_4:68676899-68676918 None:intergenic 55.0%
GAAAGACAGCACAACCCCCT+AGG - chr3_4:68677122-68677141 None:intergenic 55.0%
GCTTGTCCAGGTCGTCACAA+AGG + chr3_4:68677167-68677186 Msa0517200:CDS 55.0%
GCTTCACTCTGACAACGGAC+GGG + chr3_4:68677261-68677280 Msa0517200:CDS 55.0%
CGTGTAGGTTAGAAGAGGGG+TGG + chr3_4:68677879-68677898 Msa0517200:intron 55.0%
CTCTGTCTCCCAATGTCCAG+TGG + chr3_4:68677926-68677945 Msa0517200:CDS 55.0%
GTCTCCCAATGTCCAGTGGT+TGG + chr3_4:68677930-68677949 Msa0517200:CDS 55.0%
GCTGCCAACCACTGGACATT+GGG - chr3_4:68677937-68677956 None:intergenic 55.0%
TGCTGCCAACCACTGGACAT+TGG - chr3_4:68677938-68677957 None:intergenic 55.0%
CACTTGATGCTGCCAACCAC+TGG - chr3_4:68677945-68677964 None:intergenic 55.0%
ATACGCCCAACTGCTGTCCA+AGG + chr3_4:68678024-68678043 Msa0517200:CDS 55.0%
TACGCCCAACTGCTGTCCAA+GGG + chr3_4:68678025-68678044 Msa0517200:CDS 55.0%
!! TTGGGGTTGGCACCGGTATT+TGG - chr3_4:68678102-68678121 None:intergenic 55.0%
CTGCAAAGCATGCGTGAGGA+AGG - chr3_4:68679616-68679635 None:intergenic 55.0%
TGGGGGAGAGATGTTGCAGA+AGG + chr3_4:68679848-68679867 Msa0517200:CDS 55.0%
ACTACAAGTCCTCGACGAGC+TGG + chr3_4:68679924-68679943 Msa0517200:three_prime_UTR 55.0%
GAAGAGTTTCCAGCTCGTCG+AGG - chr3_4:68679936-68679955 None:intergenic 55.0%
GATTCCCCCATCTCAGTTGG+AGG + chr3_4:68680019-68680038 Msa0517200:three_prime_UTR 55.0%
GCCTGGGGGATGAAAGTAGC+AGG - chr3_4:68676437-68676456 None:intergenic 60.0%
! GCTTGCTTGTTGCAGCCTGG+GGG - chr3_4:68676451-68676470 None:intergenic 60.0%
!! GAGAGTGAGGGTGTTTGGGG+AGG + chr3_4:68677993-68678012 Msa0517200:CDS 60.0%
CAGGCCCTTGGACAGCAGTT+GGG - chr3_4:68678032-68678051 None:intergenic 60.0%
ACAGGCCCTTGGACAGCAGT+TGG - chr3_4:68678033-68678052 None:intergenic 60.0%
CACTCAGCTGACGAGTCAGC+AGG - chr3_4:68678934-68678953 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr3_4 gene 68674867 68680256 68674867 ID=Msa0517200;Name=Msa0517200
chr3_4 mRNA 68674867 68680256 68674867 ID=Msa0517200-mRNA-1;Parent=Msa0517200;Name=Msa0517200-mRNA-1;_AED=0.01;_eAED=0.01;_QI=260|1|1|1|0.6|0.5|6|360|415
chr3_4 exon 68674867 68675038 68674867 ID=Msa0517200-mRNA-1:exon:18138;Parent=Msa0517200-mRNA-1
chr3_4 exon 68675284 68675368 68675284 ID=Msa0517200-mRNA-1:exon:18139;Parent=Msa0517200-mRNA-1
chr3_4 exon 68676573 68677361 68676573 ID=Msa0517200-mRNA-1:exon:18140;Parent=Msa0517200-mRNA-1
chr3_4 exon 68677886 68678144 68677886 ID=Msa0517200-mRNA-1:exon:18141;Parent=Msa0517200-mRNA-1
chr3_4 exon 68678794 68678917 68678794 ID=Msa0517200-mRNA-1:exon:18142;Parent=Msa0517200-mRNA-1
chr3_4 exon 68679818 68680256 68679818 ID=Msa0517200-mRNA-1:exon:18143;Parent=Msa0517200-mRNA-1
chr3_4 five_prime_UTR 68674867 68675038 68674867 ID=Msa0517200-mRNA-1:five_prime_utr;Parent=Msa0517200-mRNA-1
chr3_4 five_prime_UTR 68675284 68675368 68675284 ID=Msa0517200-mRNA-1:five_prime_utr;Parent=Msa0517200-mRNA-1
chr3_4 five_prime_UTR 68676573 68676575 68676573 ID=Msa0517200-mRNA-1:five_prime_utr;Parent=Msa0517200-mRNA-1
chr3_4 CDS 68676576 68677361 68676576 ID=Msa0517200-mRNA-1:cds;Parent=Msa0517200-mRNA-1
chr3_4 CDS 68677886 68678144 68677886 ID=Msa0517200-mRNA-1:cds;Parent=Msa0517200-mRNA-1
chr3_4 CDS 68678794 68678917 68678794 ID=Msa0517200-mRNA-1:cds;Parent=Msa0517200-mRNA-1
chr3_4 CDS 68679818 68679896 68679818 ID=Msa0517200-mRNA-1:cds;Parent=Msa0517200-mRNA-1
chr3_4 three_prime_UTR 68679897 68680256 68679897 ID=Msa0517200-mRNA-1:three_prime_utr;Parent=Msa0517200-mRNA-1
Gene Sequence

>Msa0517200

ATGCTGGCAGATTCCCCCTCATCTCATATCAATTCGTCTGTTTCAACATCTCAAGGAATATTTCCAAATTCAATGATCGGAAATTGTGAATACCCCAATAGTGGGGCCTCATCTTCTCTTTCCCGGCCAGATGCAGACATCAATGACAGTGATGAATCTGATTTGTTCTCAGTTTCATGGAATCAGGACTACGGTTGCTTAGCTGCTGGAACAAGTCATGGTTTTCGTATATATAATTGTGAACCTTTCAAAGAGACTTTCAGGCGTGATTTAAAAAGTGGCGGTTTTAAAATTGTAGAGATGCTGTTCCGTAGCAACATCCTAGCGCTTGTTGGTGCTGTAGCAAATTCCAACTATCCACCCAATAAAGTTTTGATTTGGGATGATCATCAGAGCAGGTGCATTGGTGAATTCACATTTAGATCTGAAGTTCGTGGAGTGAAATTAAGACGTGATCGAATTGTAGTTGTTCTTGAGCACAAGATATATGTTTATAACTTCATGGATTTGAAGCTTCTTCATCAAATTGATACTATGGCAAATCCTAGGGGGTTGTGCTGTCTTTCACACCATTCAAATACATTTGTTATGGCTTGTCCAGGTCGTCACAAAGGAGAAGTTCGAGTTGAACACTTTGGACTGAATGTCACAAAATTTATCAATGCCCATGATTCCCAAATTGCATGCTTCACTCTGACAACGGACGGGCTCCTTCTTGCAACTGCTAGTGAGAAGGGCACTCTGATTAGAATCTTCAATACAATGGATGGGTCTCGTTTACAAGAAGTTAGAAGAGGGGTGGATAGGGCTGAAATCAACAGTATAGCTCTGTCTCCCAATGTCCAGTGGTTGGCAGCATCAAGTGACAAAGGCACTGTTCATATATTCAACTTGAGAGTGAGGGTGTTTGGGGAGGATAGTGTAATACGCCCAACTGCTGTCCAAGGGCCTGTACTACTTCATCAGAATTCTTCAACTGCTTTAGATCCCTTGATTTCTCCAAATACCGGTGCCAACCCCAATTCATCATTATCTTTCATGAGAGGGGTTTTACCAAAATATTTTAGTTCAGAATGGTCATTTGCACAGTTCCACTTGCCTGAAAACACTAAATTCATTGTGGCATTTGGATCACAGAACACTGTCCTAATCTCTGGCATGGATGGAAGCTTTTACAAATGCAGCTTTGATCAAGTAAATGGGGGAGAGATGTTGCAGAAGGAGTATGTTCGCTTCCTAAAATGTTAA

Protein sequence

>Msa0517200

MLADSPSSHINSSVSTSQGIFPNSMIGNCEYPNSGASSSLSRPDADINDSDESDLFSVSWNQDYGCLAAGTSHGFRIYNCEPFKETFRRDLKSGGFKIVEMLFRSNILALVGAVANSNYPPNKVLIWDDHQSRCIGEFTFRSEVRGVKLRRDRIVVVLEHKIYVYNFMDLKLLHQIDTMANPRGLCCLSHHSNTFVMACPGRHKGEVRVEHFGLNVTKFINAHDSQIACFTLTTDGLLLATASEKGTLIRIFNTMDGSRLQEVRRGVDRAEINSIALSPNVQWLAASSDKGTVHIFNLRVRVFGEDSVIRPTAVQGPVLLHQNSSTALDPLISPNTGANPNSSLSFMRGVLPKYFSSEWSFAQFHLPENTKFIVAFGSQNTVLISGMDGSFYKCSFDQVNGGEMLQKEYVRFLKC*