AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1439600

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1439600 MtrunA17_Chr7g0220221 99.119 227 2 0 1 227 1 227 2.06e-169 465
Msa1439600 MtrunA17_Chr6g0455521 71.681 226 64 0 1 226 1 226 5.21e-122 345
Msa1439600 MtrunA17_Chr7g0248061 34.021 194 104 4 34 223 13 186 1.44e-25 98.6
Msa1439600 MtrunA17_Chr8g0348651 36.196 163 84 2 61 223 44 186 1.03e-23 94.0
Msa1439600 MtrunA17_Chr8g0387191 35.000 180 101 6 50 223 33 202 6.37e-23 92.0
Msa1439600 MtrunA17_Chr2g0322261 45.312 64 33 1 156 217 14 77 5.59e-13 67.4
Msa1439600 MtrunA17_Chr7g0267851 41.667 60 33 1 160 217 29 88 3.78e-11 61.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1439600 AT5G15790.2 55.603 232 98 3 1 227 1 232 1.79e-88 261
Msa1439600 AT5G15790.5 55.603 232 98 3 1 227 1 232 1.79e-88 261
Msa1439600 AT5G15790.1 55.603 232 98 3 1 227 1 232 1.79e-88 261
Msa1439600 AT5G15790.3 55.603 232 98 3 1 227 1 232 1.79e-88 261
Msa1439600 AT5G38895.1 53.304 227 96 2 1 226 1 218 1.26e-87 258
Msa1439600 AT5G38895.2 53.304 227 96 2 1 226 76 293 1.07e-86 259
Msa1439600 AT5G38895.3 53.304 227 96 2 1 226 115 332 3.30e-86 259
Msa1439600 AT5G15790.4 54.741 232 100 3 1 227 1 232 3.77e-86 256
Msa1439600 AT3G02290.6 58.298 235 86 4 1 227 1 231 3.86e-83 247
Msa1439600 AT3G02290.4 58.298 235 86 4 1 227 1 231 3.86e-83 247
Msa1439600 AT3G02290.1 58.298 235 86 4 1 227 1 231 3.86e-83 247
Msa1439600 AT3G02290.2 58.298 235 86 4 1 227 1 231 3.86e-83 247
Msa1439600 AT3G02290.3 58.298 235 86 4 1 227 1 231 3.86e-83 247
Msa1439600 AT3G02290.5 58.009 231 85 4 1 223 1 227 3.47e-80 240
Msa1439600 AT5G41350.1 35.593 177 100 5 55 226 43 210 1.87e-24 96.7
Msa1439600 AT5G41350.3 35.593 177 100 5 55 226 43 210 1.87e-24 96.7
Msa1439600 AT5G41350.2 36.000 175 98 5 55 224 68 233 3.18e-24 96.7
Msa1439600 AT1G69085.1 65.455 55 19 0 171 225 54 108 1.20e-21 86.7
Msa1439600 AT4G00335.2 33.333 183 91 6 51 225 28 187 5.84e-21 87.0
Msa1439600 AT4G00335.1 33.333 183 91 6 51 225 28 187 5.84e-21 87.0
Msa1439600 AT4G00335.3 33.333 183 91 6 51 225 28 187 5.84e-21 87.0
Msa1439600 AT4G23450.5 58.182 55 23 0 172 226 99 153 3.11e-17 76.3
Msa1439600 AT4G23450.1 58.182 55 23 0 172 226 99 153 3.11e-17 76.3
Msa1439600 AT4G23450.6 58.182 55 23 0 172 226 99 153 3.11e-17 76.3
Msa1439600 AT4G23450.4 58.182 55 23 0 172 226 99 153 3.11e-17 76.3
Msa1439600 AT4G23450.3 58.182 55 23 0 172 226 154 208 5.87e-17 76.6
Msa1439600 AT4G23450.2 58.182 55 23 0 172 226 154 208 5.87e-17 76.6
Msa1439600 AT4G14220.1 45.161 62 31 1 165 223 31 92 6.30e-13 67.4
Msa1439600 AT5G22000.2 42.647 68 37 1 152 217 6 73 4.79e-12 65.1
Msa1439600 AT5G22000.3 43.750 64 34 1 156 217 10 73 7.84e-12 64.3
Msa1439600 AT5G22000.1 43.750 64 34 1 156 217 10 73 7.84e-12 64.3

Find 85 sgRNAs with CRISPR-Local

Find 331 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGATGTTGAAATTGTGAAAT+TGG 0.198834 tig0028823:-25723 None:intergenic
CGTTTAATCACGAAAGATTA+TGG 0.237622 tig0028823:-30808 None:intergenic
TCTTTCTTCCTTGCCAGTTT+TGG 0.246971 tig0028823:-31011 None:intergenic
TATTTCTCTCTATCATTGAT+AGG 0.296957 tig0028823:+25659 Msa1439600:five_prime_UTR
CCACTCGAACTCAAAGATTC+TGG 0.334628 tig0028823:-28594 None:intergenic
ATTCATCAATATTCCGTAGA+AGG 0.334711 tig0028823:+28340 Msa1439600:CDS
ATGAAGAGTCAGAACCTCTA+AGG 0.349845 tig0028823:+28553 Msa1439600:CDS
GATGTTGAAATTGTGAAATT+GGG 0.352723 tig0028823:-25722 None:intergenic
TGTAATCACCATTATCATCT+TGG 0.369381 tig0028823:+29489 Msa1439600:CDS
TTGCTTCCTACAAAACATTT+CGG 0.374780 tig0028823:+27268 Msa1439600:CDS
TGTCATTGGTTCGTGCTGTT+GGG 0.378835 tig0028823:+27040 Msa1439600:five_prime_UTR
AGAATTGCGCATTAAATCAT+AGG 0.389410 tig0028823:-25637 None:intergenic
GGCGCTTCCTTCATCTGTAC+AGG 0.397993 tig0028823:+28371 Msa1439600:CDS
ACATCCACATCAACCCTTAG+AGG 0.398565 tig0028823:-28567 None:intergenic
GCATCATAAGGTAACGGCCT+TGG 0.417133 tig0028823:-28459 None:intergenic
TTTCAGAGTTTGCCTTGTAA+TGG 0.419598 tig0028823:+31071 Msa1439600:three_prime_UTR
TCGTCAGCAAAACTTACAAC+TGG 0.421306 tig0028823:+28684 Msa1439600:CDS
ATATGCAACCAAGATGATAA+TGG 0.428358 tig0028823:-29497 None:intergenic
AATATTACCTTCCCACAAAC+AGG 0.432696 tig0028823:-29549 None:intergenic
TTGTCATTGGTTCGTGCTGT+TGG 0.433728 tig0028823:+27039 Msa1439600:five_prime_UTR
TGACTCTTCATTCAAATGAC+TGG 0.466664 tig0028823:-28541 None:intergenic
CTTTGAGTTCGAGTGGTAAG+TGG 0.471217 tig0028823:+28601 Msa1439600:CDS
AAAGAATCCACCGGAAAAGA+TGG 0.473727 tig0028823:+28624 Msa1439600:CDS
CGAAAGTCTTACTGAGGACT+TGG 0.474607 tig0028823:-28664 None:intergenic
TGCTGTGAGCGGAAATGCCT+AGG 0.475931 tig0028823:-28486 None:intergenic
GCGCCTGCATTTCCCTTCTA+CGG 0.477472 tig0028823:-28353 None:intergenic
GTCATTGGTTCGTGCTGTTG+GGG 0.482619 tig0028823:+27041 Msa1439600:five_prime_UTR
TGCCTAGGGTCTGCATCATA+AGG 0.490563 tig0028823:-28471 None:intergenic
TGTTGTCCAACATGTCTTGA+AGG 0.500625 tig0028823:+28744 Msa1439600:CDS
AGTGACAGCTGTCCTGTTTG+TGG 0.508370 tig0028823:+29537 Msa1439600:CDS
ACTTGTTTCAAGACGTGAGA+AGG 0.512160 tig0028823:+28515 Msa1439600:CDS
GCGCTTCCTTCATCTGTACA+GGG 0.517323 tig0028823:+28372 Msa1439600:CDS
ATCCACATAGTCATGTGTAT+AGG 0.525675 tig0028823:+27228 Msa1439600:CDS
AGAGGAGAAAAGTATAAATG+AGG 0.527201 tig0028823:-30987 None:intergenic
CGAGGGAGGGTACTAGTTTG+CGG 0.528858 tig0028823:+26963 Msa1439600:five_prime_UTR
TTCAGATTGAATCTTTGTCA+TGG 0.530429 tig0028823:+31041 Msa1439600:three_prime_UTR
TCATAAGGTAACGGCCTTGG+AGG 0.533910 tig0028823:-28456 None:intergenic
CTCCTCTGCCAAAACTGGCA+AGG 0.535386 tig0028823:+31003 Msa1439600:three_prime_UTR
GAAGAAATCCTTCCATTACA+AGG 0.536307 tig0028823:-31083 None:intergenic
GTTCAAACTTACAATCATGA+TGG 0.540605 tig0028823:-30948 None:intergenic
AGAGTTTGCCTTGTAATGGA+AGG 0.542103 tig0028823:+31075 Msa1439600:three_prime_UTR
TTCATCAATATTCCGTAGAA+GGG 0.549107 tig0028823:+28341 Msa1439600:CDS
CTTGTTTCAAGACGTGAGAA+GGG 0.550647 tig0028823:+28516 Msa1439600:CDS
AGAGTCTTAGACTGAAAGAA+GGG 0.553763 tig0028823:+27133 Msa1439600:five_prime_UTR
ATTCCGTAGAAGGGAAATGC+AGG 0.562146 tig0028823:+28350 Msa1439600:CDS
GTGACAGCTGTCCTGTTTGT+GGG 0.566634 tig0028823:+29538 Msa1439600:CDS
AAGTTACCTTCAAGACATGT+TGG 0.571053 tig0028823:-28750 None:intergenic
AAGAGTCTTAGACTGAAAGA+AGG 0.574509 tig0028823:+27132 Msa1439600:five_prime_UTR
AAGAATCCACCGGAAAAGAT+GGG 0.575796 tig0028823:+28625 Msa1439600:CDS
ATGTTGAAATTGTGAAATTG+GGG 0.579804 tig0028823:-25721 None:intergenic
AGATATACCGTTCTCCTCCA+AGG 0.579863 tig0028823:+28442 Msa1439600:CDS
TGAAGAGTCAGAACCTCTAA+GGG 0.583867 tig0028823:+28554 Msa1439600:CDS
TTCCTATACACATGACTATG+TGG 0.586658 tig0028823:-27230 None:intergenic
TGGTTGCATATACGAGTGGA+TGG 0.587414 tig0028823:+29509 Msa1439600:CDS
GCTGTGAGCGGAAATGCCTA+GGG 0.588359 tig0028823:-28485 None:intergenic
AGAACCTCTAAGGGTTGATG+TGG 0.590546 tig0028823:+28563 Msa1439600:CDS
TGACAACACTTTCGAAAACA+AGG 0.594697 tig0028823:-27022 None:intergenic
CCAGAATCTTTGAGTTCGAG+TGG 0.597311 tig0028823:+28594 Msa1439600:CDS
GGGTCTGCATCATAAGGTAA+CGG 0.597642 tig0028823:-28465 None:intergenic
CACCGGAAAAGATGGGTCAA+AGG 0.597790 tig0028823:+28632 Msa1439600:CDS
TACCTTATGATGCAGACCCT+AGG 0.614377 tig0028823:+28469 Msa1439600:CDS
TGAGAGATTGATGATGAAGG+TGG 0.615085 tig0028823:-25775 None:intergenic
CGCTTCCTTCATCTGTACAG+GGG 0.615527 tig0028823:+28373 Msa1439600:CDS
ATCATCTGAACAAACGAGGG+AGG 0.617476 tig0028823:+26949 Msa1439600:five_prime_UTR
TATAGGAACTGCGTTTGTGT+CGG 0.618127 tig0028823:+27245 Msa1439600:CDS
TTGCAGGTGATCAAGAGAGT+CGG 0.619347 tig0028823:+26904 Msa1439600:intron
ATCTTGGTTGCATATACGAG+TGG 0.623166 tig0028823:+29505 Msa1439600:CDS
TCATCTGAACAAACGAGGGA+GGG 0.623604 tig0028823:+26950 Msa1439600:five_prime_UTR
TTGTGAGAGATTGATGATGA+AGG 0.624657 tig0028823:-25778 None:intergenic
TGTGTATGCATCATCAGAAG+AGG 0.628234 tig0028823:+28716 Msa1439600:CDS
CAGCTGTCCTGTTTGTGGGA+AGG 0.631029 tig0028823:+29542 Msa1439600:CDS
CAAGTCCGTCATGCTGTGAG+CGG 0.633869 tig0028823:-28497 None:intergenic
GTAACGGCCTTGGAGGAGAA+CGG 0.636124 tig0028823:-28449 None:intergenic
GTATGCATCATCAGAAGAGG+AGG 0.639945 tig0028823:+28719 Msa1439600:CDS
TGCTGACGAAAGTCTTACTG+AGG 0.641679 tig0028823:-28670 None:intergenic
ACTTTCGAAAACAAGGAGAG+AGG 0.645074 tig0028823:-27015 None:intergenic
TCATTGGTTCGTGCTGTTGG+GGG 0.651624 tig0028823:+27042 Msa1439600:five_prime_UTR
GGTAAGTGGAAAGAATCCAC+CGG 0.653432 tig0028823:+28615 Msa1439600:CDS
GCTTCCTTCATCTGTACAGG+GGG 0.654449 tig0028823:+28374 Msa1439600:CDS
GAGTCTTAGACTGAAAGAAG+GGG 0.654534 tig0028823:+27134 Msa1439600:five_prime_UTR
GTCTTACTGAGGACTTGGAA+CGG 0.666475 tig0028823:-28659 None:intergenic
CATTTCCGCTCACAGCATGA+CGG 0.669127 tig0028823:+28492 Msa1439600:CDS
CAGATCATCTGAACAAACGA+GGG 0.691520 tig0028823:+26946 Msa1439600:five_prime_UTR
GGGAGGGTACTAGTTTGCGG+AGG 0.704838 tig0028823:+26966 Msa1439600:five_prime_UTR
ACAGATCATCTGAACAAACG+AGG 0.713669 tig0028823:+26945 Msa1439600:five_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATATTATATTATATTATATT+AGG + tig0028823:27721-27740 Msa1439600:intron 0.0%
!!! GTTAAAATTTAGATTTTTTT+GGG - tig0028823:26660-26679 None:intergenic 10.0%
!!! TGTTAATTTTAATATTTGTA+TGG + tig0028823:26705-26724 Msa1439600:intron 10.0%
!!! ACTTCAATTTTTTTTTTAAT+TGG + tig0028823:26855-26874 Msa1439600:intron 10.0%
!! TATTATATTATATTAGGATT+AGG + tig0028823:27807-27826 Msa1439600:intron 10.0%
!! TATTGTATTATATTAGAATT+AGG + tig0028823:27952-27971 Msa1439600:intron 10.0%
!! AAAAAAAAAAAACTGTAAAA+CGG - tig0028823:29113-29132 None:intergenic 10.0%
!!! TTTTACAGTTTTTTTTTTTT+GGG + tig0028823:29113-29132 Msa1439600:intron 10.0%
!! ATAATATTACAATTAAGAAT+TGG - tig0028823:29310-29329 None:intergenic 10.0%
!!! TAAATTTTGTTTGTATAAAT+TGG + tig0028823:29329-29348 Msa1439600:intron 10.0%
!! ATTTGAATTTAATATATTTG+TGG + tig0028823:30633-30652 Msa1439600:intron 10.0%
!! TGAAATAAAAAGTCAAAAAA+GGG - tig0028823:25891-25910 None:intergenic 15.0%
!! ATGAAATAAAAAGTCAAAAA+AGG - tig0028823:25892-25911 None:intergenic 15.0%
!!! GGTTAAAATTTAGATTTTTT+TGG - tig0028823:26661-26680 None:intergenic 15.0%
!!! AATCTAAATTTTAACCTTTA+AGG + tig0028823:26665-26684 Msa1439600:intron 15.0%
!!! ATCTAAATTTTAACCTTTAA+GGG + tig0028823:26666-26685 Msa1439600:intron 15.0%
!! AAAAAATTTGCATTGAAATT+TGG - tig0028823:27558-27577 None:intergenic 15.0%
!! AATTTACAATAAGATACTTA+CGG - tig0028823:28161-28180 None:intergenic 15.0%
!!! TTGACTTAATTTGTTTAATT+CGG + tig0028823:28872-28891 Msa1439600:intron 15.0%
!!! GTTTTACAGTTTTTTTTTTT+TGG + tig0028823:29112-29131 Msa1439600:intron 15.0%
!!! TATTTTTTACCATAGTTTGA+AGG + tig0028823:26193-26212 Msa1439600:intron 20.0%
!!! TTTTGTTATTCTTTAAGCTT+TGG + tig0028823:26292-26311 Msa1439600:intron 20.0%
!!! CTTGTACTAATTTTTTAACA+TGG + tig0028823:26315-26334 Msa1439600:intron 20.0%
!!! TTTTTATGTTCCATAATCTA+AGG + tig0028823:27362-27381 Msa1439600:intron 20.0%
!!! TTTTATATCTAAAATCCTTC+TGG + tig0028823:27586-27605 Msa1439600:intron 20.0%
!! ATTGGAAAAAAGTTATATGA+TGG - tig0028823:28303-28322 None:intergenic 20.0%
!! ATTTCATACTGTTTAATACT+AGG + tig0028823:28778-28797 Msa1439600:intron 20.0%
!!! TGACTTAATTTGTTTAATTC+GGG + tig0028823:28873-28892 Msa1439600:intron 20.0%
!!! TCACATGTTTTGATTTTAAT+TGG + tig0028823:29830-29849 Msa1439600:intron 20.0%
!! TTACTAATTTACATATGATC+TGG + tig0028823:30112-30131 Msa1439600:intron 20.0%
!!! CATAGTTTGATTGATTTAAT+CGG - tig0028823:30160-30179 None:intergenic 20.0%
!!! AGTGTTTATAATTTGCAATA+AGG - tig0028823:30490-30509 None:intergenic 20.0%
!!! TTTTATTTTTGTTTTGATGC+AGG + tig0028823:30765-30784 Msa1439600:intron 20.0%
! TATTTCTCTCTATCATTGAT+AGG + tig0028823:25659-25678 Msa1439600:five_prime_UTR 25.0%
!!! AATTGGGGTTTTCTAAAAAA+GGG - tig0028823:25709-25728 None:intergenic 25.0%
!!! AAATTGGGGTTTTCTAAAAA+AGG - tig0028823:25710-25729 None:intergenic 25.0%
! ATGTTGAAATTGTGAAATTG+GGG - tig0028823:25724-25743 None:intergenic 25.0%
! GATGTTGAAATTGTGAAATT+GGG - tig0028823:25725-25744 None:intergenic 25.0%
! TGATGTTGAAATTGTGAAAT+TGG - tig0028823:25726-25745 None:intergenic 25.0%
!!! TTTTATTTCATTATCGCAAC+TGG + tig0028823:25901-25920 Msa1439600:intron 25.0%
! TTTATTTCATTATCGCAACT+GGG + tig0028823:25902-25921 Msa1439600:intron 25.0%
!!! CTGCTATGTTTTTATGATTA+TGG + tig0028823:26057-26076 Msa1439600:intron 25.0%
! TATAATGTTCCTTCAAACTA+TGG - tig0028823:26205-26224 None:intergenic 25.0%
! AACAAATTTGAGTGTTTCAA+GGG - tig0028823:26245-26264 None:intergenic 25.0%
!!! GACTAGTTTGAAATACAAAT+AGG - tig0028823:26462-26481 None:intergenic 25.0%
!! GAAAAACTTTTGACAAAGAT+AGG + tig0028823:26554-26573 Msa1439600:intron 25.0%
!! TTTGAAATATTGATAGAGTC+AGG + tig0028823:26583-26602 Msa1439600:intron 25.0%
! TTGAAATATTGATAGAGTCA+GGG + tig0028823:26584-26603 Msa1439600:intron 25.0%
! AACATGATCAATCAAAACAA+CGG - tig0028823:26817-26836 None:intergenic 25.0%
!!! AAATTTTGAAGCTGAAATCA+TGG + tig0028823:27157-27176 Msa1439600:exon 25.0%
!!! AATTTTGAAGCTGAAATCAT+GGG + tig0028823:27158-27177 Msa1439600:exon 25.0%
! TCAAACAAATCCTTAGATTA+TGG - tig0028823:27375-27394 None:intergenic 25.0%
! ACTACATTATCCTTTATACT+CGG - tig0028823:27862-27881 None:intergenic 25.0%
! AAGACATTATCCTTTATACT+CGG - tig0028823:28007-28026 None:intergenic 25.0%
! ACAACTCAAATGAAATAATG+TGG - tig0028823:27890-27909 None:intergenic 25.0%
!! CAAAACAAAGAATAGTCTTA+CGG + tig0028823:28077-28096 Msa1439600:intron 25.0%
! GTAGAAAATATAAACACACT+TGG - tig0028823:28199-28218 None:intergenic 25.0%
! TTGATGAATACTGAAATTCA+AGG - tig0028823:28329-28348 None:intergenic 25.0%
!! ATTCGGGTATTATAATTTTG+TGG + tig0028823:28889-28908 Msa1439600:intron 25.0%
!! ATAATTTTGTGGTATACTTG+TGG + tig0028823:28900-28919 Msa1439600:intron 25.0%
! ATAAAATCTGTCTGTAAACA+TGG - tig0028823:29020-29039 None:intergenic 25.0%
! AAGCATAATGTGAATGAATA+AGG - tig0028823:29156-29175 None:intergenic 25.0%
!! TTACATTTTGTCACTATCTT+CGG - tig0028823:29474-29493 None:intergenic 25.0%
! TTTAATTGGAAATCTGCTAA+AGG + tig0028823:29844-29863 Msa1439600:intron 25.0%
! TTAATTGGAAATCTGCTAAA+GGG + tig0028823:29845-29864 Msa1439600:intron 25.0%
! AATCATATAGAATCTCACTT+TGG - tig0028823:29871-29890 None:intergenic 25.0%
!!! TTACCGAACGTTTTAAAAAT+TGG + tig0028823:29892-29911 Msa1439600:intron 25.0%
!! ATATTCAGGTTAAGAAAACA+AGG - tig0028823:30304-30323 None:intergenic 25.0%
! CATTATAGAAAGAAGATCAT+AGG - tig0028823:30587-30606 None:intergenic 25.0%
AGAATTGCGCATTAAATCAT+AGG - tig0028823:25640-25659 None:intergenic 30.0%
!! GTTTTCTAAAAAAGGGGTTT+TGG - tig0028823:25702-25721 None:intergenic 30.0%
!! ATTGGGGTTTTCTAAAAAAG+GGG - tig0028823:25708-25727 None:intergenic 30.0%
GTCAAAAAAGGGATGAAAAA+CGG - tig0028823:25880-25899 None:intergenic 30.0%
CAACAAATTTGAGTGTTTCA+AGG - tig0028823:26246-26265 None:intergenic 30.0%
GAAGGTTAAAACCATCAAAT+TGG + tig0028823:26413-26432 Msa1439600:intron 30.0%
AAAGACAAAGACCAATTTGA+TGG - tig0028823:26427-26446 None:intergenic 30.0%
TTGAAATACAAATAGGAGAG+TGG - tig0028823:26455-26474 None:intergenic 30.0%
TTGTATTTCAAACTAGTCCT+TGG + tig0028823:26464-26483 Msa1439600:intron 30.0%
TTGTCAAAAGTCTCTCAATT+AGG + tig0028823:26489-26508 Msa1439600:intron 30.0%
! CAAAACAACGGTTTTTCTTA+AGG - tig0028823:26805-26824 None:intergenic 30.0%
TTGCTTCCTACAAAACATTT+CGG + tig0028823:27268-27287 Msa1439600:CDS 30.0%
CTACATTATCCTTTATACTC+GGG - tig0028823:27861-27880 None:intergenic 30.0%
AGACATTATCCTTTATACTC+GGG - tig0028823:28006-28025 None:intergenic 30.0%
ATGAATACTGAAATTCAAGG+TGG - tig0028823:28326-28345 None:intergenic 30.0%
ATTCATCAATATTCCGTAGA+AGG + tig0028823:28340-28359 Msa1439600:CDS 30.0%
TTCATCAATATTCCGTAGAA+GGG + tig0028823:28341-28360 Msa1439600:CDS 30.0%
AATTGAGTTCAAACATCAAG+TGG - tig0028823:28819-28838 None:intergenic 30.0%
! CTCAATTTTGTACGAAATGT+AGG + tig0028823:28832-28851 Msa1439600:intron 30.0%
! GACAGATTTTATGTGTTTCA+CGG + tig0028823:29028-29047 Msa1439600:intron 30.0%
!! TCAAAATTAAGGGTGTCTTA+GGG - tig0028823:29089-29108 None:intergenic 30.0%
GTAAAACGGCTCAAAATTAA+GGG - tig0028823:29099-29118 None:intergenic 30.0%
TGTAAAACGGCTCAAAATTA+AGG - tig0028823:29100-29119 None:intergenic 30.0%
TACTGTAATAGTCTGTTTGT+TGG - tig0028823:29385-29404 None:intergenic 30.0%
AAACAGACTATTACAGTAAC+AGG + tig0028823:29387-29406 Msa1439600:intron 30.0%
TGTAATCACCATTATCATCT+TGG + tig0028823:29489-29508 Msa1439600:CDS 30.0%
ATATGCAACCAAGATGATAA+TGG - tig0028823:29500-29519 None:intergenic 30.0%
!! CTTTTTCACTGAATTGCTTT+TGG + tig0028823:29594-29613 Msa1439600:intron 30.0%
!!! AACTCTTTTCTGGTTTGTAT+TGG - tig0028823:29768-29787 None:intergenic 30.0%
!!! CGTCCAATTTTTAAAACGTT+CGG - tig0028823:29898-29917 None:intergenic 30.0%
!!! CGAACGTTTTAAAAATTGGA+CGG + tig0028823:29896-29915 Msa1439600:intron 30.0%
!!! GAACGTTTTAAAAATTGGAC+GGG + tig0028823:29897-29916 Msa1439600:intron 30.0%
! TGATTTAATCGGTTTAACCA+TGG - tig0028823:30149-30168 None:intergenic 30.0%
!! TTTTACCCAATAAAGTGCTT+TGG + tig0028823:30231-30250 Msa1439600:intron 30.0%
! TTTACCCAATAAAGTGCTTT+GGG + tig0028823:30232-30251 Msa1439600:intron 30.0%
AAGATGACTACACTATATTC+AGG - tig0028823:30318-30337 None:intergenic 30.0%
!!! GTCATCTTTTAAGAAGTATC+TGG + tig0028823:30330-30349 Msa1439600:intron 30.0%
GAAAGAATTCTGATGAAAAG+GGG - tig0028823:30379-30398 None:intergenic 30.0%
CGAAAGAATTCTGATGAAAA+GGG - tig0028823:30380-30399 None:intergenic 30.0%
ACGAAAGAATTCTGATGAAA+AGG - tig0028823:30381-30400 None:intergenic 30.0%
! GAATATGTTACTTGATCGTA+TGG + tig0028823:30404-30423 Msa1439600:intron 30.0%
CGTTTAATCACGAAAGATTA+TGG - tig0028823:30811-30830 None:intergenic 30.0%
GTTCAAACTTACAATCATGA+TGG - tig0028823:30951-30970 None:intergenic 30.0%
! AGAGGAGAAAAGTATAAATG+AGG - tig0028823:30990-31009 None:intergenic 30.0%
TTCAGATTGAATCTTTGTCA+TGG + tig0028823:31041-31060 Msa1439600:three_prime_UTR 30.0%
!! TTGTGAGAGATTGATGATGA+AGG - tig0028823:25781-25800 None:intergenic 35.0%
CGTTAGAAAAAACCTTTCTC+AGG + tig0028823:25809-25828 Msa1439600:five_prime_UTR 35.0%
! GGAAAAAGGTTGGATTTTGA+GGG - tig0028823:25837-25856 None:intergenic 35.0%
GTAAACGAGAAAAGGGAAAA+AGG - tig0028823:25851-25870 None:intergenic 35.0%
GAATTGGGTAAACGAGAAAA+GGG - tig0028823:25858-25877 None:intergenic 35.0%
AAGGGATGAAAAACGGAATT+GGG - tig0028823:25873-25892 None:intergenic 35.0%
AAAGGGATGAAAAACGGAAT+TGG - tig0028823:25874-25893 None:intergenic 35.0%
TGATCAAAAGTTCAGCTTAG+AGG - tig0028823:26367-26386 None:intergenic 35.0%
! AGCTGAACTTTTGATCAACT+TGG + tig0028823:26370-26389 Msa1439600:intron 35.0%
! GCTGAACTTTTGATCAACTT+GGG + tig0028823:26371-26390 Msa1439600:intron 35.0%
! AGAGACTTTTGACAAATCCA+AGG - tig0028823:26484-26503 None:intergenic 35.0%
!! ATGTTTTTGTCACATGACGA+GGG - tig0028823:26516-26535 None:intergenic 35.0%
GTGACAAAAACATGAATACG+AGG + tig0028823:26523-26542 Msa1439600:intron 35.0%
!! TGGTGATGTTTATGCGATTT+TGG + tig0028823:26875-26894 Msa1439600:intron 35.0%
!!! GCGATTTTGGTTTATTTTGC+AGG + tig0028823:26888-26907 Msa1439600:intron 35.0%
TGACAACACTTTCGAAAACA+AGG - tig0028823:27025-27044 None:intergenic 35.0%
!!! GTTTTCGAAAGTGTTGTCAT+TGG + tig0028823:27026-27045 Msa1439600:five_prime_UTR 35.0%
AAGAGTCTTAGACTGAAAGA+AGG + tig0028823:27132-27151 Msa1439600:five_prime_UTR 35.0%
AGAGTCTTAGACTGAAAGAA+GGG + tig0028823:27133-27152 Msa1439600:five_prime_UTR 35.0%
ATCCACATAGTCATGTGTAT+AGG + tig0028823:27228-27247 Msa1439600:CDS 35.0%
TTCCTATACACATGACTATG+TGG - tig0028823:27233-27252 None:intergenic 35.0%
GGTCAACCAATCAATAACTT+CGG + tig0028823:27524-27543 Msa1439600:intron 35.0%
CAATCAATAACTTCGGATGA+CGG + tig0028823:27531-27550 Msa1439600:intron 35.0%
TACTGAAATTCAAGGTGGAT+TGG - tig0028823:28321-28340 None:intergenic 35.0%
TGACTCTTCATTCAAATGAC+TGG - tig0028823:28544-28563 None:intergenic 35.0%
AAGTTACCTTCAAGACATGT+TGG - tig0028823:28753-28772 None:intergenic 35.0%
AACAATTAGTGCCAGTATTG+CGG + tig0028823:28941-28960 Msa1439600:intron 35.0%
AAATCTGTCTGTAAACATGG+AGG - tig0028823:29017-29036 None:intergenic 35.0%
!! CTCAAAATTAAGGGTGTCTT+AGG - tig0028823:29090-29109 None:intergenic 35.0%
AATATTACCTTCCCACAAAC+AGG - tig0028823:29552-29571 None:intergenic 35.0%
TGGAAATGACTGATCAAAGT+TGG - tig0028823:29748-29767 None:intergenic 35.0%
! GTAGAATTGGAACTCTTTTC+TGG - tig0028823:29778-29797 None:intergenic 35.0%
GATCTCACTAGTTCAATCTT+TGG + tig0028823:30187-30206 Msa1439600:intron 35.0%
! TCTTCCCAAAGCACTTTATT+GGG - tig0028823:30239-30258 None:intergenic 35.0%
AAAACAAGGAATCCATGTAG+AGG - tig0028823:30290-30309 None:intergenic 35.0%
CAGTGAACTACAATTGCATT+AGG - tig0028823:30450-30469 None:intergenic 35.0%
CTAATGCAATTGTAGTTCAC+TGG + tig0028823:30448-30467 Msa1439600:intron 35.0%
! TTTCGTTTTGCTTCTGTTGT+TGG - tig0028823:30853-30872 None:intergenic 35.0%
TTTCAGAGTTTGCCTTGTAA+TGG + tig0028823:31071-31090 Msa1439600:three_prime_UTR 35.0%
GAAGAAATCCTTCCATTACA+AGG - tig0028823:31086-31105 None:intergenic 35.0%
!! AAAAGGGGTTTTGGCGTTTT+CGG - tig0028823:25693-25712 None:intergenic 40.0%
!! TGAGAGATTGATGATGAAGG+TGG - tig0028823:25778-25797 None:intergenic 40.0%
!!! ATTTTGAGGGTACCTGAGAA+AGG - tig0028823:25824-25843 None:intergenic 40.0%
! GGGAAAAAGGTTGGATTTTG+AGG - tig0028823:25838-25857 None:intergenic 40.0%
ACGAGAAAAGGGAAAAAGGT+TGG - tig0028823:25847-25866 None:intergenic 40.0%
GGAATTGGGTAAACGAGAAA+AGG - tig0028823:25859-25878 None:intergenic 40.0%
!! CATGTTTTTGTCACATGACG+AGG - tig0028823:26517-26536 None:intergenic 40.0%
GTCAGGGACTAATTTGAGAA+TGG + tig0028823:26600-26619 Msa1439600:intron 40.0%
TGAGAATGGCTTACAAAGAC+AGG + tig0028823:26614-26633 Msa1439600:intron 40.0%
GAGAATGGCTTACAAAGACA+GGG + tig0028823:26615-26634 Msa1439600:intron 40.0%
TACAAAGACAGGGACCAATT+TGG + tig0028823:26625-26644 Msa1439600:intron 40.0%
TTGGGAGTAAACCACCAAAT+TGG - tig0028823:26642-26661 None:intergenic 40.0%
! GCACTGTTCTTTTCCCTTAA+AGG - tig0028823:26682-26701 None:intergenic 40.0%
ACAGATCATCTGAACAAACG+AGG + tig0028823:26945-26964 Msa1439600:five_prime_UTR 40.0%
CAGATCATCTGAACAAACGA+GGG + tig0028823:26946-26965 Msa1439600:five_prime_UTR 40.0%
ACTTTCGAAAACAAGGAGAG+AGG - tig0028823:27018-27037 None:intergenic 40.0%
GAGTCTTAGACTGAAAGAAG+GGG + tig0028823:27134-27153 Msa1439600:five_prime_UTR 40.0%
TATAGGAACTGCGTTTGTGT+CGG + tig0028823:27245-27264 Msa1439600:CDS 40.0%
! CAACAGCCGAAATGTTTTGT+AGG - tig0028823:27277-27296 None:intergenic 40.0%
! GCTAATCTAGAACTTTGCTG+AGG + tig0028823:27333-27352 Msa1439600:intron 40.0%
CGTCATCCGAAGTTATTGAT+TGG - tig0028823:27533-27552 None:intergenic 40.0%
CATAGATGAGAGAGAACGAA+GGG - tig0028823:27677-27696 None:intergenic 40.0%
ACATAGATGAGAGAGAACGA+AGG - tig0028823:27678-27697 None:intergenic 40.0%
TTGAACACTCCCGAGTATAA+AGG + tig0028823:27849-27868 Msa1439600:intron 40.0%
TTGAACACTCCCGAGTATAA+AGG + tig0028823:27849-27868 Msa1439600:intron 40.0%
ACTTGTTTCAAGACGTGAGA+AGG + tig0028823:28515-28534 Msa1439600:CDS 40.0%
CTTGTTTCAAGACGTGAGAA+GGG + tig0028823:28516-28535 Msa1439600:CDS 40.0%
ATGAAGAGTCAGAACCTCTA+AGG + tig0028823:28553-28572 Msa1439600:CDS 40.0%
TGAAGAGTCAGAACCTCTAA+GGG + tig0028823:28554-28573 Msa1439600:CDS 40.0%
AAAGAATCCACCGGAAAAGA+TGG + tig0028823:28624-28643 Msa1439600:CDS 40.0%
AAGAATCCACCGGAAAAGAT+GGG + tig0028823:28625-28644 Msa1439600:CDS 40.0%
! TTCCTTTGACCCATCTTTTC+CGG - tig0028823:28637-28656 None:intergenic 40.0%
TCGTCAGCAAAACTTACAAC+TGG + tig0028823:28684-28703 Msa1439600:CDS 40.0%
TGTGTATGCATCATCAGAAG+AGG + tig0028823:28716-28735 Msa1439600:CDS 40.0%
TGTTGTCCAACATGTCTTGA+AGG + tig0028823:28744-28763 Msa1439600:CDS 40.0%
TGAGAACCTATGCAGTGTTT+GGG - tig0028823:28980-28999 None:intergenic 40.0%
ATGAGAACCTATGCAGTGTT+TGG - tig0028823:28981-29000 None:intergenic 40.0%
ACGGTACTATTGCATTGCAA+TGG + tig0028823:29047-29066 Msa1439600:intron 40.0%
GGTCCTTGTTGCAAACAAAA+CGG + tig0028823:29350-29369 Msa1439600:intron 40.0%
!!! CATCCGTTTTGTTTGCAACA+AGG - tig0028823:29356-29375 None:intergenic 40.0%
CTCTTCAGTGTATTCTGCAA+GGG - tig0028823:29448-29467 None:intergenic 40.0%
TCTCTTCAGTGTATTCTGCA+AGG - tig0028823:29449-29468 None:intergenic 40.0%
ATCTTGGTTGCATATACGAG+TGG + tig0028823:29505-29524 Msa1439600:CDS 40.0%
ATAGAGCACACAAAAGTCAG+TGG + tig0028823:29633-29652 Msa1439600:intron 40.0%
TAGAGCACACAAAAGTCAGT+GGG + tig0028823:29634-29653 Msa1439600:intron 40.0%
TAGCAAACTTACCAAGTCTC+TGG + tig0028823:29700-29719 Msa1439600:intron 40.0%
CTTGTTCAACTGGTTGAATC+AGG + tig0028823:29925-29944 Msa1439600:intron 40.0%
AGCTAGTTCGCCAATTGATT+TGG + tig0028823:29952-29971 Msa1439600:intron 40.0%
ACAACCAGGACCAAATCAAT+TGG - tig0028823:29965-29984 None:intergenic 40.0%
!! TTGATTTGGTCCTGGTTGTA+TGG + tig0028823:29966-29985 Msa1439600:intron 40.0%
! ATCTGGATCTAGTTCAACCA+TGG + tig0028823:30129-30148 Msa1439600:intron 40.0%
CACTAGTTCAATCTTTGGTC+AGG + tig0028823:30192-30211 Msa1439600:intron 40.0%
! CTCTTCCCAAAGCACTTTAT+TGG - tig0028823:30240-30259 None:intergenic 40.0%
!! CAATAAAGTGCTTTGGGAAG+AGG + tig0028823:30238-30257 Msa1439600:intron 40.0%
GTTAATAGCACTCCTCTACA+TGG + tig0028823:30275-30294 Msa1439600:intron 40.0%
TGATGAAAAGGGGAAATGAC+TGG - tig0028823:30369-30388 None:intergenic 40.0%
TTTGTGGTAAGCATGTTCTG+AGG + tig0028823:30649-30668 Msa1439600:intron 40.0%
! TCTTTCTTCCTTGCCAGTTT+TGG - tig0028823:31014-31033 None:intergenic 40.0%
! AGAGTTTGCCTTGTAATGGA+AGG + tig0028823:31075-31094 Msa1439600:three_prime_UTR 40.0%
CTTCTCGTTCGTAGAAGAAG+GGG - tig0028823:26397-26416 None:intergenic 45.0%
CCTTCTCGTTCGTAGAAGAA+GGG - tig0028823:26398-26417 None:intergenic 45.0%
ACCTTCTCGTTCGTAGAAGA+AGG - tig0028823:26399-26418 None:intergenic 45.0%
AAAGACAGGGACCAATTTGG+TGG + tig0028823:26628-26647 Msa1439600:intron 45.0%
TTGCAGGTGATCAAGAGAGT+CGG + tig0028823:26904-26923 Msa1439600:intron 45.0%
ATCATCTGAACAAACGAGGG+AGG + tig0028823:26949-26968 Msa1439600:five_prime_UTR 45.0%
TCATCTGAACAAACGAGGGA+GGG + tig0028823:26950-26969 Msa1439600:five_prime_UTR 45.0%
!! TTGTCATTGGTTCGTGCTGT+TGG + tig0028823:27039-27058 Msa1439600:five_prime_UTR 45.0%
!! TGTCATTGGTTCGTGCTGTT+GGG + tig0028823:27040-27059 Msa1439600:five_prime_UTR 45.0%
CTTGACCCAATGCAATGCAA+CGG + tig0028823:27462-27481 Msa1439600:intron 45.0%
TTGACCCAATGCAATGCAAC+GGG + tig0028823:27463-27482 Msa1439600:intron 45.0%
CAAACCCGTTGCATTGCATT+GGG - tig0028823:27470-27489 None:intergenic 45.0%
! TCTAAAATCCTTCTGGACCG+TGG + tig0028823:27593-27612 Msa1439600:intron 45.0%
ATGAGAGAGAACGAAGGGTA+GGG - tig0028823:27672-27691 None:intergenic 45.0%
! GGTGCGTTGATGCATATTGA+AGG - tig0028823:28140-28159 None:intergenic 45.0%
ATTCCGTAGAAGGGAAATGC+AGG + tig0028823:28350-28369 Msa1439600:CDS 45.0%
AGATATACCGTTCTCCTCCA+AGG + tig0028823:28442-28461 Msa1439600:CDS 45.0%
GGGTCTGCATCATAAGGTAA+CGG - tig0028823:28468-28487 None:intergenic 45.0%
TACCTTATGATGCAGACCCT+AGG + tig0028823:28469-28488 Msa1439600:CDS 45.0%
!! AGAACCTCTAAGGGTTGATG+TGG + tig0028823:28563-28582 Msa1439600:CDS 45.0%
ACATCCACATCAACCCTTAG+AGG - tig0028823:28570-28589 None:intergenic 45.0%
CCACTCGAACTCAAAGATTC+TGG - tig0028823:28597-28616 None:intergenic 45.0%
! CCAGAATCTTTGAGTTCGAG+TGG + tig0028823:28594-28613 Msa1439600:CDS 45.0%
! CTTTGAGTTCGAGTGGTAAG+TGG + tig0028823:28601-28620 Msa1439600:CDS 45.0%
GGTAAGTGGAAAGAATCCAC+CGG + tig0028823:28615-28634 Msa1439600:CDS 45.0%
GTCTTACTGAGGACTTGGAA+CGG - tig0028823:28662-28681 None:intergenic 45.0%
CGAAAGTCTTACTGAGGACT+TGG - tig0028823:28667-28686 None:intergenic 45.0%
TGCTGACGAAAGTCTTACTG+AGG - tig0028823:28673-28692 None:intergenic 45.0%
GTATGCATCATCAGAAGAGG+AGG + tig0028823:28719-28738 Msa1439600:CDS 45.0%
ATTAGTGCCAGTATTGCGGT+CGG + tig0028823:28945-28964 Msa1439600:intron 45.0%
AGAACCTATGCAGTGTTTGG+GGG - tig0028823:28978-28997 None:intergenic 45.0%
GAGAACCTATGCAGTGTTTG+GGG - tig0028823:28979-28998 None:intergenic 45.0%
TGCAAAACACAGAAGGTGGT+GGG - tig0028823:29210-29229 None:intergenic 45.0%
GATGTCCGCTAATAGATGGA+GGG - tig0028823:29241-29260 None:intergenic 45.0%
TGACCCAAAAACTGGGATAC+CGG - tig0028823:29270-29289 None:intergenic 45.0%
TGGTTGCATATACGAGTGGA+TGG + tig0028823:29509-29528 Msa1439600:CDS 45.0%
TGCACTCTTAACCAGAGACT+TGG - tig0028823:29714-29733 None:intergenic 45.0%
! ACTGTTGGGACTGGTAGAAT+TGG - tig0028823:29791-29810 None:intergenic 45.0%
!! TTCGCCAATTGATTTGGTCC+TGG + tig0028823:29958-29977 Msa1439600:intron 45.0%
AACGAATCGTGGTTCAACTC+TGG - tig0028823:30015-30034 None:intergenic 45.0%
AGAGTTGAACCACGATTCGT+TGG + tig0028823:30014-30033 Msa1439600:intron 45.0%
TTGAACCACGATTCGTTGGT+CGG + tig0028823:30018-30037 Msa1439600:intron 45.0%
! CTTTTCTCCTCTGCCAAAAC+TGG + tig0028823:30998-31017 Msa1439600:three_prime_UTR 45.0%
CCCTTCTTCTACGAACGAGA+AGG + tig0028823:26395-26414 Msa1439600:intron 50.0%
!! GTCATTGGTTCGTGCTGTTG+GGG + tig0028823:27041-27060 Msa1439600:five_prime_UTR 50.0%
!! TCATTGGTTCGTGCTGTTGG+GGG + tig0028823:27042-27061 Msa1439600:five_prime_UTR 50.0%
CCAAACCCGTTGCATTGCAT+TGG - tig0028823:27471-27490 None:intergenic 50.0%
! CCAATGCAATGCAACGGGTT+TGG + tig0028823:27468-27487 Msa1439600:intron 50.0%
CAGCAATCCACGCATTCATG+CGG + tig0028823:27503-27522 Msa1439600:intron 50.0%
ACGAAGGGTAGGGTTGCATT+AGG - tig0028823:27662-27681 None:intergenic 50.0%
GATGAGAGAGAACGAAGGGT+AGG - tig0028823:27673-27692 None:intergenic 50.0%
GCGCTTCCTTCATCTGTACA+GGG + tig0028823:28372-28391 Msa1439600:CDS 50.0%
CGCTTCCTTCATCTGTACAG+GGG + tig0028823:28373-28392 Msa1439600:CDS 50.0%
GCTTCCTTCATCTGTACAGG+GGG + tig0028823:28374-28393 Msa1439600:CDS 50.0%
! TCATAAGGTAACGGCCTTGG+AGG - tig0028823:28459-28478 None:intergenic 50.0%
! GCATCATAAGGTAACGGCCT+TGG - tig0028823:28462-28481 None:intergenic 50.0%
TGCCTAGGGTCTGCATCATA+AGG - tig0028823:28474-28493 None:intergenic 50.0%
CATTTCCGCTCACAGCATGA+CGG + tig0028823:28492-28511 Msa1439600:CDS 50.0%
! CTTTGACCCATCTTTTCCGG+TGG - tig0028823:28634-28653 None:intergenic 50.0%
CACCGGAAAAGATGGGTCAA+AGG + tig0028823:28632-28651 Msa1439600:CDS 50.0%
GAACCTATGCAGTGTTTGGG+GGG - tig0028823:28977-28996 None:intergenic 50.0%
CTGTCTGTAAACATGGAGGC+TGG - tig0028823:29013-29032 None:intergenic 50.0%
GTGCAAAACACAGAAGGTGG+TGG - tig0028823:29211-29230 None:intergenic 50.0%
CTAATAGATGGAGGGAGAGG+CGG - tig0028823:29233-29252 None:intergenic 50.0%
CCTCTCCCTCCATCTATTAG+CGG + tig0028823:29233-29252 Msa1439600:intron 50.0%
GGATGTCCGCTAATAGATGG+AGG - tig0028823:29242-29261 None:intergenic 50.0%
GCAGGATGTCCGCTAATAGA+TGG - tig0028823:29245-29264 None:intergenic 50.0%
! CACCCGGTATCCCAGTTTTT+GGG + tig0028823:29264-29283 Msa1439600:intron 50.0%
GACCCAAAAACTGGGATACC+GGG - tig0028823:29269-29288 None:intergenic 50.0%
AGTGACAGCTGTCCTGTTTG+TGG + tig0028823:29537-29556 Msa1439600:CDS 50.0%
GTGACAGCTGTCCTGTTTGT+GGG + tig0028823:29538-29557 Msa1439600:CDS 50.0%
!! AAGTCAGTGGGCTGAGAAAC+AGG + tig0028823:29646-29665 Msa1439600:intron 50.0%
CGTCAGCACAGAACACTGTT+GGG - tig0028823:29805-29824 None:intergenic 50.0%
!! ACGGGACTAGCTTGTTCAAC+TGG + tig0028823:29915-29934 Msa1439600:intron 50.0%
GTATGGCAGTCTGGTCTAAG+AGG + tig0028823:29983-30002 Msa1439600:intron 50.0%
!! TTCCTTGCCAGTTTTGGCAG+AGG - tig0028823:31008-31027 None:intergenic 50.0%
!! AGGGGTTTTGGCGTTTTCGG+TGG - tig0028823:25690-25709 None:intergenic 55.0%
!! CGAGGGAGGGTACTAGTTTG+CGG + tig0028823:26963-26982 Msa1439600:five_prime_UTR 55.0%
TGGTTGACCGCATGAATGCG+TGG - tig0028823:27513-27532 None:intergenic 55.0%
ATCAGTGACCACGGTCCAGA+AGG - tig0028823:27604-27623 None:intergenic 55.0%
AGCCAGCACATCAGTGACCA+CGG - tig0028823:27613-27632 None:intergenic 55.0%
!! CACTGATGTGCTGGCTGTGT+CGG + tig0028823:27617-27636 Msa1439600:intron 55.0%
CTGTGTCGGATTGTGACAGC+AGG + tig0028823:27631-27650 Msa1439600:intron 55.0%
GCGCCTGCATTTCCCTTCTA+CGG - tig0028823:28356-28375 None:intergenic 55.0%
GGCGCTTCCTTCATCTGTAC+AGG + tig0028823:28371-28390 Msa1439600:CDS 55.0%
GTAACGGCCTTGGAGGAGAA+CGG - tig0028823:28452-28471 None:intergenic 55.0%
GCTGTGAGCGGAAATGCCTA+GGG - tig0028823:28488-28507 None:intergenic 55.0%
TGCTGTGAGCGGAAATGCCT+AGG - tig0028823:28489-28508 None:intergenic 55.0%
CAAGTCCGTCATGCTGTGAG+CGG - tig0028823:28500-28519 None:intergenic 55.0%
!! AAGGTGGTGGGTTCGCAACA+GGG - tig0028823:29198-29217 None:intergenic 55.0%
GCGGTGCAAAACACAGAAGG+TGG - tig0028823:29214-29233 None:intergenic 55.0%
GAGGCGGTGCAAAACACAGA+AGG - tig0028823:29217-29236 None:intergenic 55.0%
CCGCTAATAGATGGAGGGAG+AGG - tig0028823:29236-29255 None:intergenic 55.0%
! ATTAGCGGACATCCTGCACC+CGG + tig0028823:29248-29267 Msa1439600:intron 55.0%
AAAACTGGGATACCGGGTGC+AGG - tig0028823:29263-29282 None:intergenic 55.0%
! GCACCCGGTATCCCAGTTTT+TGG + tig0028823:29263-29282 Msa1439600:intron 55.0%
!!! TCCCAGTTTTTGGGTCAGCG+AGG + tig0028823:29273-29292 Msa1439600:intron 55.0%
GCCTCGCTGACCCAAAAACT+GGG - tig0028823:29277-29296 None:intergenic 55.0%
AGCCTCGCTGACCCAAAAAC+TGG - tig0028823:29278-29297 None:intergenic 55.0%
CAGCTGTCCTGTTTGTGGGA+AGG + tig0028823:29542-29561 Msa1439600:CDS 55.0%
GCACAGAACACTGTTGGGAC+TGG - tig0028823:29800-29819 None:intergenic 55.0%
GCGTCAGCACAGAACACTGT+TGG - tig0028823:29806-29825 None:intergenic 55.0%
GTCCTGGTTGTATGGCAGTC+TGG + tig0028823:29974-29993 Msa1439600:intron 55.0%
GACCAGACTGCCATACAACC+AGG - tig0028823:29979-29998 None:intergenic 55.0%
ACCACGATTCGTTGGTCGGT+TGG + tig0028823:30022-30041 Msa1439600:intron 55.0%
ACCAACCGACCAACGAATCG+TGG - tig0028823:30026-30045 None:intergenic 55.0%
CTCCTCTGCCAAAACTGGCA+AGG + tig0028823:31003-31022 Msa1439600:three_prime_UTR 55.0%
!! GGGAGGGTACTAGTTTGCGG+AGG + tig0028823:26966-26985 Msa1439600:five_prime_UTR 60.0%
GACCGTGGTCACTGATGTGC+TGG + tig0028823:27608-27627 Msa1439600:intron 60.0%
GCTGCCCCCTGTACAGATGA+AGG - tig0028823:28381-28400 None:intergenic 60.0%
AGTGCCAGTATTGCGGTCGG+TGG + tig0028823:28948-28967 Msa1439600:intron 60.0%
GTGCCAGTATTGCGGTCGGT+GGG + tig0028823:28949-28968 Msa1439600:intron 60.0%
GCACCCCCCAAACACTGCAT+AGG + tig0028823:28971-28990 Msa1439600:intron 60.0%
!! TGGTGGGTTCGCAACAGGGA+AGG - tig0028823:29194-29213 None:intergenic 60.0%
!! GAAGGTGGTGGGTTCGCAAC+AGG - tig0028823:29199-29218 None:intergenic 60.0%
TTTGGGTCAGCGAGGCTCGT+TGG + tig0028823:29281-29300 Msa1439600:intron 60.0%
GTGCCCACCGACCGCAATAC+TGG - tig0028823:28955-28974 None:intergenic 65.0%
GGGTCAGCGAGGCTCGTTGG+AGG + tig0028823:29284-29303 Msa1439600:intron 70.0%
Chromosome Type Strat End Strand Name
tig0028823 gene 25621 31111 25621 ID=Msa1439600;Name=Msa1439600
tig0028823 mRNA 25621 31111 25621 ID=Msa1439600-mRNA-1;Parent=Msa1439600;Name=Msa1439600-mRNA-1;_AED=0.03;_eAED=0.03;_QI=476|1|1|1|0.5|0.4|5|298|227
tig0028823 exon 25621 25830 25621 ID=Msa1439600-mRNA-1:exon:11853;Parent=Msa1439600-mRNA-1
tig0028823 exon 26910 27295 26910 ID=Msa1439600-mRNA-1:exon:11854;Parent=Msa1439600-mRNA-1
tig0028823 exon 28339 28765 28339 ID=Msa1439600-mRNA-1:exon:11855;Parent=Msa1439600-mRNA-1
tig0028823 exon 29454 29563 29454 ID=Msa1439600-mRNA-1:exon:11856;Parent=Msa1439600-mRNA-1
tig0028823 exon 30787 31111 30787 ID=Msa1439600-mRNA-1:exon:11857;Parent=Msa1439600-mRNA-1
tig0028823 five_prime_UTR 25621 25830 25621 ID=Msa1439600-mRNA-1:five_prime_utr;Parent=Msa1439600-mRNA-1
tig0028823 five_prime_UTR 26910 27175 26910 ID=Msa1439600-mRNA-1:five_prime_utr;Parent=Msa1439600-mRNA-1
tig0028823 CDS 27176 27295 27176 ID=Msa1439600-mRNA-1:cds;Parent=Msa1439600-mRNA-1
tig0028823 CDS 28339 28765 28339 ID=Msa1439600-mRNA-1:cds;Parent=Msa1439600-mRNA-1
tig0028823 CDS 29454 29563 29454 ID=Msa1439600-mRNA-1:cds;Parent=Msa1439600-mRNA-1
tig0028823 CDS 30787 30813 30787 ID=Msa1439600-mRNA-1:cds;Parent=Msa1439600-mRNA-1
tig0028823 three_prime_UTR 30814 31111 30814 ID=Msa1439600-mRNA-1:three_prime_utr;Parent=Msa1439600-mRNA-1
Gene Sequence

>Msa1439600

ATGGGTTCGATTTGTTCTTGTTTAAGTGTTGATGATTTTGAAGATTACATGAATCCACATAGTCATGTGTATAGGAACTGCGTTTGTGTCGGTTGCTTCCTACAAAACATTTCGGCTGTTTATTCATCAATATTCCGTAGAAGGGAAATGCAGGCGCTTCCTTCATCTGTACAGGGGGCAGCATCTATGACTAATACAGCATCACTTGATAATTCTCTAGCTGAGATATACCGTTCTCCTCCAAGGCCGTTACCTTATGATGCAGACCCTAGGCATTTCCGCTCACAGCATGACGGACTTGTTTCAAGACGTGAGAAGGGTTCCAGTCATTTGAATGAAGAGTCAGAACCTCTAAGGGTTGATGTGGATGTAGATCCAGAATCTTTGAGTTCGAGTGGTAAGTGGAAAGAATCCACCGGAAAAGATGGGTCAAAGGAATACCGTTCCAAGTCCTCAGTAAGACTTTCGTCAGCAAAACTTACAACTGGAGCTGCACTTGTGTATGCATCATCAGAAGAGGAGGATTGTTGTCCAACATGTCTTGAAGAATACACTGAAGAGAATCCGAAGATAGTGACAAAATGTAATCACCATTATCATCTTGGTTGCATATACGAGTGGATGGAGAGAAGTGACAGCTGTCCTGTTTGTGGGAAGGTGATGTTATTCGATGAATCGCCATAA
Protein sequence

>Msa1439600

MGSICSCLSVDDFEDYMNPHSHVYRNCVCVGCFLQNISAVYSSIFRRREMQALPSSVQGAASMTNTASLDNSLAEIYRSPPRPLPYDADPRHFRSQHDGLVSRREKGSSHLNEESEPLRVDVDVDPESLSSSGKWKESTGKDGSKEYRSKSSVRLSSAKLTTGAALVYASSEEEDCCPTCLEEYTEENPKIVTKCNHHYHLGCIYEWMERSDSCPVCGKVMLFDESP*