AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0129820


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0129820 MtrunA17_Chr1g0196961 95.029 342 6 2 1 342 1 331 0.0 665
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0129820 AT2G38680.1 67.987 303 93 4 42 341 40 341 1.56e-146 417

Find 94 sgRNAs with CRISPR-Local

Find 249 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGAAATGGAGGATATCAAAT+TGG 0.201664 1_3:-59904764 Msa0129820:CDS
ATGCCACATTAACAAAGTTT+TGG 0.238917 1_3:-59904162 Msa0129820:CDS
CGCTGGTCCTCAAAAGCTTC+AGG 0.241520 1_3:-59904677 Msa0129820:intron
CTTCATAAGGAGAAATTAAT+AGG 0.248523 1_3:+59901976 None:intergenic
TCCAATATTAACAGGTTCTA+AGG 0.257059 1_3:-59903237 Msa0129820:intron
GCTAAGAGTATATGGTTAAC+TGG 0.261941 1_3:+59902035 None:intergenic
AGAACCAATGTTCTCCTTCT+TGG 0.265210 1_3:-59902600 Msa0129820:CDS
TCAGCCTCTGCATGAATTAC+AGG 0.322297 1_3:+59905109 None:intergenic
TTCATATAACTGCTGCCTTT+TGG 0.338973 1_3:+59903981 None:intergenic
ATGATACTGCTAAGAGTATA+TGG 0.344765 1_3:+59902027 None:intergenic
TCATTTGCTTAAAATATTAC+CGG 0.362053 1_3:+59901684 None:intergenic
TCACCGAATCGTTCGTGAAC+AGG 0.376885 1_3:+59902663 None:intergenic
AGTTTGTTGTGGAGCAAAAC+AGG 0.387622 1_3:+59904715 None:intergenic
AAATGAGCATGCTCTTGATA+TGG 0.389669 1_3:-59902691 Msa0129820:CDS
ACTTGTTAGCATTCTTCATA+AGG 0.393716 1_3:+59901963 None:intergenic
CAATGAGACGTGTTTATCAT+AGG 0.396301 1_3:+59905168 None:intergenic
TTGTGGAAAACATTTGGAAA+TGG 0.410077 1_3:-59904779 Msa0129820:CDS
GAAATGGAGGATATCAAATT+GGG 0.419430 1_3:-59904763 Msa0129820:CDS
CCTGTATTAATATTCTCTGC+AGG 0.422018 1_3:-59903387 Msa0129820:CDS
ACGCATGCTCTTCTTATTGA+AGG 0.428415 1_3:-59903661 Msa0129820:CDS
CCCTTGGGCTGGAAGAGAAA+AGG 0.437854 1_3:-59903930 Msa0129820:CDS
TTTCCCCTCCTGGATATGGC+TGG 0.439476 1_3:-59901914 Msa0129820:three_prime_UTR
CCTGCAGAGAATATTAATAC+AGG 0.451901 1_3:+59903387 None:intergenic
TGGTGATCACACTGGAGACT+TGG 0.455229 1_3:-59902580 Msa0129820:CDS
GGAGAAATTAATAGGAACCT+TGG 0.457417 1_3:+59901984 None:intergenic
GAACGATTCGGTGATATTGA+TGG 0.458869 1_3:-59902654 Msa0129820:CDS
GAGAAATTAATAGGAACCTT+GGG 0.466094 1_3:+59901985 None:intergenic
AGCTTCATTGTAAACATACA+TGG 0.466970 1_3:+59901849 None:intergenic
CTGGATTATCCTGCTGCAAA+AGG 0.467977 1_3:+59904013 None:intergenic
AACCCAAAACTTTGTTAATG+TGG 0.470399 1_3:+59904159 None:intergenic
ATGTGAAGATAGTATCCAAC+AGG 0.474848 1_3:-59903189 Msa0129820:CDS
GCGCCTGTTCACGAACGATT+CGG 0.479515 1_3:-59902666 Msa0129820:CDS
CTTGCTGCAATTCGTTCCGC+TGG 0.481743 1_3:-59904694 Msa0129820:CDS
AGTTGGTGGTGACGATGGAT+TGG 0.487760 1_3:+59904950 None:intergenic
CTTGAGCAAGTCATTGTCAT+CGG 0.490371 1_3:+59902626 None:intergenic
GCTTACATAGTTAAGTTAAG+TGG 0.491803 1_3:+59905023 None:intergenic
AGACGTGTTTATCATAGGTT+CGG 0.493867 1_3:+59905173 None:intergenic
GCTAATCGCCAGCCATATCC+AGG 0.493885 1_3:+59901906 None:intergenic
TGGTGACGATGGATTGGAGT+TGG 0.494711 1_3:+59904956 None:intergenic
AGCAAGTCATTGTCATCGGT+TGG 0.500842 1_3:+59902630 None:intergenic
TACGATACTCGAATTTCTGT+GGG 0.505866 1_3:-59902537 Msa0129820:CDS
TGGAAAACATTTGGAAATGG+AGG 0.511488 1_3:-59904776 Msa0129820:CDS
CACCTTTAAAAGATACAAGT+TGG 0.511666 1_3:+59903149 None:intergenic
ATCCAGAATATGATGCCAAA+AGG 0.511735 1_3:-59903996 Msa0129820:CDS
CAGGTCACAAGTAAAATGAA+TGG 0.513317 1_3:+59905128 None:intergenic
ATTGTTAAATACCATCCTGT+TGG 0.514081 1_3:+59903174 None:intergenic
ATATGAACATTACCATCCAT+TGG 0.515894 1_3:-59903965 Msa0129820:CDS
ATTAGCAGTTATGTTATGCT+AGG 0.518158 1_3:-59901889 Msa0129820:three_prime_UTR
CACTTTGATAACTTCCCACA+TGG 0.519877 1_3:+59902094 None:intergenic
CTGTATTAATATTCTCTGCA+GGG 0.521088 1_3:-59903386 Msa0129820:CDS
CTCCTTCTTGGTGATCACAC+TGG 0.541831 1_3:-59902588 Msa0129820:CDS
GGTGATCACACTGGAGACTT+GGG 0.548044 1_3:-59902579 Msa0129820:CDS
GAATTGCAGCAAGTTTGTTG+TGG 0.553040 1_3:+59904704 None:intergenic
GTCTCTCATATGTGCTCAAG+TGG 0.559631 1_3:-59902071 Msa0129820:CDS
GCTACACTTCTTCAACATCA+AGG 0.560582 1_3:-59904906 Msa0129820:intron
AAAGTGACGTGGGAGAAAGT+TGG 0.564371 1_3:+59904933 None:intergenic
GAGAAAGTTGGTGGTGACGA+TGG 0.566081 1_3:+59904945 None:intergenic
CTAAGAGTATATGGTTAACT+GGG 0.566861 1_3:+59902036 None:intergenic
TAGGAGAAAATTCCAATGGA+TGG 0.567633 1_3:+59903953 None:intergenic
TGATGTTGAAGAAGTGTAGC+GGG 0.570667 1_3:+59904909 None:intergenic
GGAGACTTGGGAATGTCTGA+TGG 0.575829 1_3:-59902567 Msa0129820:CDS
TTACGATACTCGAATTTCTG+TGG 0.585256 1_3:-59902538 Msa0129820:CDS
TGACGATGGATTGGAGTTGG+AGG 0.602766 1_3:+59904959 None:intergenic
GGGTTCAGAATTGACGCTGG+TGG 0.610837 1_3:-59904743 Msa0129820:CDS
AAAGGAAACTCATGGTAGAG+TGG 0.614036 1_3:-59903912 Msa0129820:intron
TTCTCTTCCAGCCCAAGGGT+AGG 0.615641 1_3:+59903934 None:intergenic
CTCCAGTGTGATCACCAAGA+AGG 0.618740 1_3:+59902586 None:intergenic
CATGCTCTTCTTATTGAAGG+AGG 0.621492 1_3:-59903658 Msa0129820:CDS
GGTTCAGAATTGACGCTGGT+GGG 0.621982 1_3:-59904742 Msa0129820:CDS
AGGGTAGGAGAAAATTCCAA+TGG 0.624608 1_3:+59903949 None:intergenic
GGAAGAGAAAAGGAAACTCA+TGG 0.628987 1_3:-59903920 Msa0129820:CDS
GTGACGTGGGAGAAAGTTGG+TGG 0.633859 1_3:+59904936 None:intergenic
ATCGCCAGCCATATCCAGGA+GGG 0.634611 1_3:+59901910 None:intergenic
GCTTGCTGATATCATTGAAG+AGG 0.634896 1_3:-59903364 Msa0129820:intron
AACAGGATGGTATTTAACAA+TGG 0.634907 1_3:-59903172 Msa0129820:CDS
GAGTCATTTCTAGGCAGTCA+TGG 0.643405 1_3:-59904036 Msa0129820:intron
TGCAGAATGATGCGCCCATG+TGG 0.644000 1_3:-59902109 Msa0129820:intron
GGCGATAACTCATTTGAGTG+TGG 0.645636 1_3:+59904980 None:intergenic
GCTTCATTGTAAACATACAT+GGG 0.648678 1_3:+59901850 None:intergenic
ACTTTGATAACTTCCCACAT+GGG 0.653578 1_3:+59902095 None:intergenic
GAAGATAGTATCCAACAGGA+TGG 0.654156 1_3:-59903185 Msa0129820:CDS
ATCACCAAGAAGGAGAACAT+TGG 0.655582 1_3:+59902596 None:intergenic
TCTCTCATATGTGCTCAAGT+GGG 0.662286 1_3:-59902070 Msa0129820:CDS
GTGTAGCGGGAAAAGTGACG+TGG 0.663698 1_3:+59904922 None:intergenic
ATTGGGTTCAGAATTGACGC+TGG 0.663874 1_3:-59904746 Msa0129820:CDS
GCAGAATGATGCGCCCATGT+GGG 0.682785 1_3:-59902108 Msa0129820:intron
TCGCCAGCCATATCCAGGAG+GGG 0.683257 1_3:+59901911 None:intergenic
TTGATGTTGAAGAAGTGTAG+CGG 0.688175 1_3:+59904908 None:intergenic
TAAGTGAGTTCTCAACGTTG+TGG 0.688216 1_3:+59902371 None:intergenic
TGTAGCGGGAAAAGTGACGT+GGG 0.689625 1_3:+59904923 None:intergenic
TGCGACAGTGACATAGACAC+CGG 0.704097 1_3:-59901703 Msa0129820:three_prime_UTR
GTGACCTGTAATTCATGCAG+AGG 0.707599 1_3:-59905113 Msa0129820:five_prime_UTR
CATGTGGGAAGTTATCAAAG+TGG 0.709745 1_3:-59902093 Msa0129820:CDS
AATCGCCAGCCATATCCAGG+AGG 0.724907 1_3:+59901909 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATGTAATTTTTTTTCTTTTA+AGG - chr1_3:59902002-59902021 Msa0129820:three_prime_UTR 10.0%
!!! TGTAATTTTTTTTCTTTTAA+GGG - chr1_3:59902003-59902022 Msa0129820:three_prime_UTR 10.0%
!! AAATATAAATCTTAGAATTT+GGG + chr1_3:59902614-59902633 None:intergenic 10.0%
!! AAAATATAAATCTTAGAATT+TGG + chr1_3:59902615-59902634 None:intergenic 10.0%
!!! ATTTATATTTTCTTTTTTGT+AGG - chr1_3:59902624-59902643 Msa0129820:CDS 10.0%
!!! TATTCTGTTTTTTTTTTTTA+TGG - chr1_3:59902995-59903014 Msa0129820:intron 10.0%
!!! ATTCTGTTTTTTTTTTTTAT+GGG - chr1_3:59902996-59903015 Msa0129820:intron 10.0%
!! ATAATAACTAAATTAATGTT+TGG + chr1_3:59904563-59904582 None:intergenic 10.0%
!! AAAAAAATTACATGCAATAA+GGG + chr1_3:59901995-59902014 None:intergenic 15.0%
!! AAAAAAAATTACATGCAATA+AGG + chr1_3:59901996-59902015 None:intergenic 15.0%
!!! TCATCTTAAGTTTTTATATT+CGG + chr1_3:59902492-59902511 None:intergenic 15.0%
!! AAAAATAACAAAATGGAAAA+TGG + chr1_3:59903402-59903421 None:intergenic 15.0%
!! AAAAAATTACATGCAATAAG+GGG + chr1_3:59901994-59902013 None:intergenic 20.0%
!! AACTCAATTATCAATGAAAT+GGG + chr1_3:59902184-59902203 None:intergenic 20.0%
!! AAACTCAATTATCAATGAAA+TGG + chr1_3:59902185-59902204 None:intergenic 20.0%
!! TAATTGCATAACACAAAATT+GGG - chr1_3:59902249-59902268 Msa0129820:intron 20.0%
!!! TTAAGATTTGGTGTATTATT+AGG - chr1_3:59903131-59903150 Msa0129820:intron 20.0%
!! ATATATTTGTCAAAGAAAGA+TGG + chr1_3:59903289-59903308 None:intergenic 20.0%
!!! TGATATGTTCATTTTATATC+AGG - chr1_3:59903321-59903340 Msa0129820:intron 20.0%
!!! TTTCCATTTTGTTATTTTTC+AGG - chr1_3:59903403-59903422 Msa0129820:intron 20.0%
!! TTTCCTGAAAAATAACAAAA+TGG + chr1_3:59903409-59903428 None:intergenic 20.0%
!!! AAGTCTATTTTGTTTTATGT+TGG - chr1_3:59903489-59903508 Msa0129820:intron 20.0%
!! AATACACAATAAATGAAAGT+TGG + chr1_3:59903712-59903731 None:intergenic 20.0%
!!! TATGCAAATATATTTTTCAG+AGG - chr1_3:59903757-59903776 Msa0129820:intron 20.0%
!! TTAATTATTATGTAATTCCC+CGG + chr1_3:59903783-59903802 None:intergenic 20.0%
!! CATAATAATTAATTGCCTTT+AGG - chr1_3:59903791-59903810 Msa0129820:intron 20.0%
!!! ATTTTGTATATGAGAAAACA+AGG + chr1_3:59903989-59904008 None:intergenic 20.0%
!! TAACTAAATTAATGTTTGGA+AGG + chr1_3:59904559-59904578 None:intergenic 20.0%
!! TCATTTGCTTAAAATATTAC+CGG + chr1_3:59905143-59905162 None:intergenic 20.0%
!!! ATTTTGTTTTCCCATTTTTC+TGG - chr1_3:59901773-59901792 Msa0129820:three_prime_UTR 25.0%
! AAAAATTACATGCAATAAGG+GGG + chr1_3:59901993-59902012 None:intergenic 25.0%
!!! ATTTTGTTGTGGAAAACATT+TGG - chr1_3:59902039-59902058 Msa0129820:three_prime_UTR 25.0%
! ACTCAATTATCAATGAAATG+GGG + chr1_3:59902183-59902202 None:intergenic 25.0%
! GTAATTGCATAACACAAAAT+TGG - chr1_3:59902248-59902267 Msa0129820:intron 25.0%
! CAAGCATTATTATATAGTGT+GGG + chr1_3:59902358-59902377 None:intergenic 25.0%
! TCAAGCATTATTATATAGTG+TGG + chr1_3:59902359-59902378 None:intergenic 25.0%
!! GTATCTCAATTTTACAAAAG+TGG + chr1_3:59902402-59902421 None:intergenic 25.0%
! TTGTAAAATTGAGATACTAG+TGG - chr1_3:59902405-59902424 Msa0129820:intron 25.0%
! TGTAAAATTGAGATACTAGT+GGG - chr1_3:59902406-59902425 Msa0129820:intron 25.0%
!!! TTAACAAAGTTTTGGGTTAA+TGG - chr1_3:59902670-59902689 Msa0129820:CDS 25.0%
! AATAGTCATGTAACATACTT+TGG + chr1_3:59902705-59902724 None:intergenic 25.0%
!! TAATGCTAACATAGCTTTTA+GGG - chr1_3:59903222-59903241 Msa0129820:CDS 25.0%
!! TTCTGAGCTTTTTGAATTTT+TGG - chr1_3:59903252-59903271 Msa0129820:intron 25.0%
!!! TATTTTGTTTTATGTTGGCA+AGG - chr1_3:59903494-59903513 Msa0129820:intron 25.0%
!! ATTTCTCTTCATTTTCTTGT+CGG - chr1_3:59903526-59903545 Msa0129820:intron 25.0%
!! TACTATCTTCACATTTTTGA+AGG + chr1_3:59903629-59903648 None:intergenic 25.0%
! TTTATTGTGTATTTGTTTGC+TGG - chr1_3:59903719-59903738 Msa0129820:intron 25.0%
! GAGAAGTAAAAATTAAGAAC+TGG + chr1_3:59904074-59904093 None:intergenic 25.0%
! TTTAACAAAATCACAGCAAT+TGG + chr1_3:59904342-59904361 None:intergenic 25.0%
! CCAGAAAAAAAATTAAGTCA+GGG + chr1_3:59904412-59904431 None:intergenic 25.0%
! ACCAGAAAAAAAATTAAGTC+AGG + chr1_3:59904413-59904432 None:intergenic 25.0%
!!! AGCTTTTGATGTTGTTTTAA+TGG - chr1_3:59904489-59904508 Msa0129820:intron 25.0%
!! CTTCCTATATGATTTGTATA+AGG - chr1_3:59904609-59904628 Msa0129820:intron 25.0%
! TCACCTTATACAAATCATAT+AGG + chr1_3:59904615-59904634 None:intergenic 25.0%
! TATTTCTTATGTTAAGTACC+AGG - chr1_3:59904647-59904666 Msa0129820:intron 25.0%
! GCAAGTTAAAATTAGATACT+CGG + chr1_3:59904684-59904703 None:intergenic 25.0%
! CTTCATAAGGAGAAATTAAT+AGG + chr1_3:59904851-59904870 None:intergenic 25.0%
! TATGCAAAAGCAAAAAATCA+GGG + chr1_3:59905073-59905092 None:intergenic 25.0%
! ATATGCAAAAGCAAAAAATC+AGG + chr1_3:59905074-59905093 None:intergenic 25.0%
GCTTACATAGTTAAGTTAAG+TGG + chr1_3:59901804-59901823 None:intergenic 30.0%
AAAGGTAAAAAAGAGAAGAG+GGG + chr1_3:59901963-59901982 None:intergenic 30.0%
GAAAGGTAAAAAAGAGAAGA+GGG + chr1_3:59901964-59901983 None:intergenic 30.0%
AAAATTACATGCAATAAGGG+GGG + chr1_3:59901992-59902011 None:intergenic 30.0%
! TCGTTTTCTACATTTTGTTG+TGG - chr1_3:59902028-59902047 Msa0129820:three_prime_UTR 30.0%
TTGTGGAAAACATTTGGAAA+TGG - chr1_3:59902045-59902064 Msa0129820:exon 30.0%
GAAATGGAGGATATCAAATT+GGG - chr1_3:59902061-59902080 Msa0129820:exon 30.0%
! GTGTTTAAGAGTCTCATTTT+TGG - chr1_3:59902438-59902457 Msa0129820:intron 30.0%
!! TTTAAGAGTCTCATTTTTGG+AGG - chr1_3:59902441-59902460 Msa0129820:intron 30.0%
!! TTAAGAGTCTCATTTTTGGA+GGG - chr1_3:59902442-59902461 Msa0129820:intron 30.0%
!! TCATTTTTGGAGGGTTTTTT+TGG - chr1_3:59902451-59902470 Msa0129820:intron 30.0%
!! CATTTTTGGAGGGTTTTTTT+GGG - chr1_3:59902452-59902471 Msa0129820:intron 30.0%
! ACCTTACAAATCTGTTTTGT+AGG - chr1_3:59902574-59902593 Msa0129820:CDS 30.0%
TCCTACAAAACAGATTTGTA+AGG + chr1_3:59902578-59902597 None:intergenic 30.0%
! ATGCCACATTAACAAAGTTT+TGG - chr1_3:59902662-59902681 Msa0129820:CDS 30.0%
! TGCCACATTAACAAAGTTTT+GGG - chr1_3:59902663-59902682 Msa0129820:CDS 30.0%
AACCCAAAACTTTGTTAATG+TGG + chr1_3:59902668-59902687 None:intergenic 30.0%
! TCCTAATTTTTGACGTGTAA+GGG + chr1_3:59902747-59902766 None:intergenic 30.0%
! TTCCTAATTTTTGACGTGTA+AGG + chr1_3:59902748-59902767 None:intergenic 30.0%
TATCTAATCGAGTCATTTCT+AGG - chr1_3:59902779-59902798 Msa0129820:intron 30.0%
ATATGAACATTACCATCCAT+TGG - chr1_3:59902859-59902878 Msa0129820:intron 30.0%
TAACTAGTAAGTAAACTCTG+GGG + chr1_3:59903041-59903060 None:intergenic 30.0%
GTAACTAGTAAGTAAACTCT+GGG + chr1_3:59903042-59903061 None:intergenic 30.0%
TGTAACTAGTAAGTAAACTC+TGG + chr1_3:59903043-59903062 None:intergenic 30.0%
TGATGCTGTAACTTAAGATT+TGG - chr1_3:59903119-59903138 Msa0129820:intron 30.0%
!! AGATTTGGTGTATTATTAGG+TGG - chr1_3:59903134-59903153 Msa0129820:intron 30.0%
!! GATTTGGTGTATTATTAGGT+GGG - chr1_3:59903135-59903154 Msa0129820:intron 30.0%
!! ATTTGGTGTATTATTAGGTG+GGG - chr1_3:59903136-59903155 Msa0129820:intron 30.0%
! CTAATGCTAACATAGCTTTT+AGG - chr1_3:59903221-59903240 Msa0129820:CDS 30.0%
!! TGAGCTTTTTGAATTTTTGG+AGG - chr1_3:59903255-59903274 Msa0129820:intron 30.0%
CTGTATTAATATTCTCTGCA+GGG - chr1_3:59903438-59903457 Msa0129820:intron 30.0%
!!! TCGCTTTTTCCAATATTAAC+AGG - chr1_3:59903579-59903598 Msa0129820:CDS 30.0%
TCCAATATTAACAGGTTCTA+AGG - chr1_3:59903587-59903606 Msa0129820:CDS 30.0%
ATTGTTAAATACCATCCTGT+TGG + chr1_3:59903653-59903672 None:intergenic 30.0%
AACAGGATGGTATTTAACAA+TGG - chr1_3:59903652-59903671 Msa0129820:CDS 30.0%
! CACCTTTAAAAGATACAAGT+TGG + chr1_3:59903678-59903697 None:intergenic 30.0%
!! CAAATATATTTTTCAGAGGC+CGG - chr1_3:59903761-59903780 Msa0129820:intron 30.0%
!! AAATATATTTTTCAGAGGCC+GGG - chr1_3:59903762-59903781 Msa0129820:intron 30.0%
TTTAATTATGTTTAAGCCCC+TGG - chr1_3:59903862-59903881 Msa0129820:intron 30.0%
!! TACTTCTCAATTTTGATCAC+AGG - chr1_3:59904086-59904105 Msa0129820:intron 30.0%
GAGCTCAATTAATGTCTATA+AGG - chr1_3:59904365-59904384 Msa0129820:intron 30.0%
!!! CCCTGACTTAATTTTTTTTC+TGG - chr1_3:59904409-59904428 Msa0129820:intron 30.0%
!! TTAATGGTAAGTTGATTAGC+TGG - chr1_3:59904505-59904524 Msa0129820:intron 30.0%
ATTAATGTTTGGAAGGAACA+AGG + chr1_3:59904552-59904571 None:intergenic 30.0%
! CTAAGAGTATATGGTTAACT+GGG + chr1_3:59904791-59904810 None:intergenic 30.0%
! ATGATACTGCTAAGAGTATA+TGG + chr1_3:59904800-59904819 None:intergenic 30.0%
GAGAAATTAATAGGAACCTT+GGG + chr1_3:59904842-59904861 None:intergenic 30.0%
! ACTTGTTAGCATTCTTCATA+AGG + chr1_3:59904864-59904883 None:intergenic 30.0%
ATTAGCAGTTATGTTATGCT+AGG - chr1_3:59904935-59904954 Msa0129820:CDS 30.0%
GCTTCATTGTAAACATACAT+GGG + chr1_3:59904977-59904996 None:intergenic 30.0%
AGCTTCATTGTAAACATACA+TGG + chr1_3:59904978-59904997 None:intergenic 30.0%
CAATGAGACGTGTTTATCAT+AGG + chr1_3:59901659-59901678 None:intergenic 35.0%
CAGGTCACAAGTAAAATGAA+TGG + chr1_3:59901699-59901718 None:intergenic 35.0%
!! AGTGGTGTTACCAGAAAAAT+GGG + chr1_3:59901786-59901805 None:intergenic 35.0%
!! AAGTGGTGTTACCAGAAAAA+TGG + chr1_3:59901787-59901806 None:intergenic 35.0%
! TTGATGTTGAAGAAGTGTAG+CGG + chr1_3:59901919-59901938 None:intergenic 35.0%
AAGGTAAAAAAGAGAAGAGG+GGG + chr1_3:59901962-59901981 None:intergenic 35.0%
GGAAAGGTAAAAAAGAGAAG+AGG + chr1_3:59901965-59901984 None:intergenic 35.0%
TGGAAAACATTTGGAAATGG+AGG - chr1_3:59902048-59902067 Msa0129820:exon 35.0%
GGAAATGGAGGATATCAAAT+TGG - chr1_3:59902060-59902079 Msa0129820:exon 35.0%
! GAAAAAACCTGAAGCTTTTG+AGG + chr1_3:59902157-59902176 None:intergenic 35.0%
TCCCTTACACGTCAAAAATT+AGG - chr1_3:59902743-59902762 Msa0129820:intron 35.0%
ATCCAGAATATGATGCCAAA+AGG - chr1_3:59902828-59902847 Msa0129820:intron 35.0%
! TTCATATAACTGCTGCCTTT+TGG + chr1_3:59902846-59902865 None:intergenic 35.0%
TAGGAGAAAATTCCAATGGA+TGG + chr1_3:59902874-59902893 None:intergenic 35.0%
! CAATGCTGGTCTACATATAT+AGG - chr1_3:59902952-59902971 Msa0129820:intron 35.0%
AACTAGTAAGTAAACTCTGG+GGG + chr1_3:59903040-59903059 None:intergenic 35.0%
ATTGAATATCACTGTACCTC+TGG + chr1_3:59903086-59903105 None:intergenic 35.0%
CCTGCAGAGAATATTAATAC+AGG + chr1_3:59903440-59903459 None:intergenic 35.0%
CCTGTATTAATATTCTCTGC+AGG - chr1_3:59903437-59903456 Msa0129820:intron 35.0%
GCCTTAGAACCTGTTAATAT+TGG + chr1_3:59903591-59903610 None:intergenic 35.0%
ATGTGAAGATAGTATCCAAC+AGG - chr1_3:59903635-59903654 Msa0129820:CDS 35.0%
! GGCCAACTTGTATCTTTTAA+AGG - chr1_3:59903673-59903692 Msa0129820:CDS 35.0%
!! AATATATTTTTCAGAGGCCG+GGG - chr1_3:59903763-59903782 Msa0129820:intron 35.0%
! TAATTGCCTTTAGGTTTCAC+TGG - chr1_3:59903800-59903819 Msa0129820:intron 35.0%
GTATTACCAGTGAAACCTAA+AGG + chr1_3:59903809-59903828 None:intergenic 35.0%
AAATGAGCATGCTCTTGATA+TGG - chr1_3:59904133-59904152 Msa0129820:intron 35.0%
TTACGATACTCGAATTTCTG+TGG - chr1_3:59904286-59904305 Msa0129820:intron 35.0%
TACGATACTCGAATTTCTGT+GGG - chr1_3:59904287-59904306 Msa0129820:intron 35.0%
!! CTGGTATTTTGAATTGTTGC+AGG - chr1_3:59904428-59904447 Msa0129820:intron 35.0%
TTATGTTAAGTACCAGGTGA+AGG - chr1_3:59904653-59904672 Msa0129820:intron 35.0%
TATGTTAAGTACCAGGTGAA+GGG - chr1_3:59904654-59904673 Msa0129820:intron 35.0%
! ACTTTGATAACTTCCCACAT+GGG + chr1_3:59904732-59904751 None:intergenic 35.0%
! GCTAAGAGTATATGGTTAAC+TGG + chr1_3:59904792-59904811 None:intergenic 35.0%
! TTTTTGTCTTACACATCCCA+AGG - chr1_3:59904823-59904842 Msa0129820:intron 35.0%
GGAGAAATTAATAGGAACCT+TGG + chr1_3:59904843-59904862 None:intergenic 35.0%
! ATTTTCTGTTGCGATTGTGA+GGG - chr1_3:59905028-59905047 Msa0129820:five_prime_UTR 35.0%
! TGATGTTGAAGAAGTGTAGC+GGG + chr1_3:59901918-59901937 None:intergenic 40.0%
GCTACACTTCTTCAACATCA+AGG - chr1_3:59901918-59901937 Msa0129820:three_prime_UTR 40.0%
!! AGTTTGTTGTGGAGCAAAAC+AGG + chr1_3:59902112-59902131 None:intergenic 40.0%
!! GAATTGCAGCAAGTTTGTTG+TGG + chr1_3:59902123-59902142 None:intergenic 40.0%
TATATAGTGTGGGACTTCTC+AGG + chr1_3:59902348-59902367 None:intergenic 40.0%
!!! TTTTGGAGGGTTTTTTTGGG+AGG - chr1_3:59902455-59902474 Msa0129820:intron 40.0%
!!! TTTGGAGGGTTTTTTTGGGA+GGG - chr1_3:59902456-59902475 Msa0129820:intron 40.0%
!!! TTTTGGGTTAATGGAACTCG+CGG - chr1_3:59902679-59902698 Msa0129820:CDS 40.0%
! TGCCTTTTGGCATCATATTC+TGG + chr1_3:59902833-59902852 None:intergenic 40.0%
AGGGTAGGAGAAAATTCCAA+TGG + chr1_3:59902878-59902897 None:intergenic 40.0%
! TTGGAATTTTCTCCTACCCT+TGG - chr1_3:59902878-59902897 Msa0129820:intron 40.0%
! TGGAATTTTCTCCTACCCTT+GGG - chr1_3:59902879-59902898 Msa0129820:intron 40.0%
GGAAGAGAAAAGGAAACTCA+TGG - chr1_3:59902904-59902923 Msa0129820:intron 40.0%
AAAGGAAACTCATGGTAGAG+TGG - chr1_3:59902912-59902931 Msa0129820:intron 40.0%
TGGTAGAGTGGTATGTGATT+CGG - chr1_3:59902924-59902943 Msa0129820:intron 40.0%
ACGCATGCTCTTCTTATTGA+AGG - chr1_3:59903163-59903182 Msa0129820:CDS 40.0%
CATGCTCTTCTTATTGAAGG+AGG - chr1_3:59903166-59903185 Msa0129820:CDS 40.0%
!! GCTAACATAGCTTTTAGGGA+AGG - chr1_3:59903226-59903245 Msa0129820:CDS 40.0%
GAAGATTCGATTGCTGACAT+TGG - chr1_3:59903373-59903392 Msa0129820:CDS 40.0%
! GCTTGCTGATATCATTGAAG+AGG - chr1_3:59903460-59903479 Msa0129820:intron 40.0%
GAAGATAGTATCCAACAGGA+TGG - chr1_3:59903639-59903658 Msa0129820:CDS 40.0%
!! GAACGATTCGGTGATATTGA+TGG - chr1_3:59904170-59904189 Msa0129820:CDS 40.0%
CTTGAGCAAGTCATTGTCAT+CGG + chr1_3:59904201-59904220 None:intergenic 40.0%
AGAACCAATGTTCTCCTTCT+TGG - chr1_3:59904224-59904243 Msa0129820:intron 40.0%
ATCACCAAGAAGGAGAACAT+TGG + chr1_3:59904231-59904250 None:intergenic 40.0%
AAATCACAGCAATTGGAGTC+TGG + chr1_3:59904335-59904354 None:intergenic 40.0%
TAAGTGAGTTCTCAACGTTG+TGG + chr1_3:59904456-59904475 None:intergenic 40.0%
!! TGGTAAGTTGATTAGCTGGA+TGG - chr1_3:59904509-59904528 Msa0129820:intron 40.0%
ATGTTAAGTACCAGGTGAAG+GGG - chr1_3:59904655-59904674 Msa0129820:intron 40.0%
! CACTTTGATAACTTCCCACA+TGG + chr1_3:59904733-59904752 None:intergenic 40.0%
CATGTGGGAAGTTATCAAAG+TGG - chr1_3:59904731-59904750 Msa0129820:CDS 40.0%
TCTCTCATATGTGCTCAAGT+GGG - chr1_3:59904754-59904773 Msa0129820:CDS 40.0%
! GGGAAAAAAGTGCAGTAAAG+GGG + chr1_3:59904896-59904915 None:intergenic 40.0%
! GGGGAAAAAAGTGCAGTAAA+GGG + chr1_3:59904897-59904916 None:intergenic 40.0%
! AGGGGAAAAAAGTGCAGTAA+AGG + chr1_3:59904898-59904917 None:intergenic 40.0%
! CATTTTCTGTTGCGATTGTG+AGG - chr1_3:59905027-59905046 Msa0129820:five_prime_UTR 40.0%
GTGACCTGTAATTCATGCAG+AGG - chr1_3:59901711-59901730 Msa0129820:three_prime_UTR 45.0%
TCAGCCTCTGCATGAATTAC+AGG + chr1_3:59901718-59901737 None:intergenic 45.0%
GGCGATAACTCATTTGAGTG+TGG + chr1_3:59901847-59901866 None:intergenic 45.0%
AAAGTGACGTGGGAGAAAGT+TGG + chr1_3:59901894-59901913 None:intergenic 45.0%
GAGGGGGTGAAGAAGAAAAA+AGG + chr1_3:59901946-59901965 None:intergenic 45.0%
ATTGGGTTCAGAATTGACGC+TGG - chr1_3:59902078-59902097 Msa0129820:CDS 45.0%
GAGTGTGACTCGATTGATCT+TGG + chr1_3:59902528-59902547 None:intergenic 45.0%
!! ACGTGTAAGGGAGCATTAGA+GGG + chr1_3:59902735-59902754 None:intergenic 45.0%
! GAGTCATTTCTAGGCAGTCA+TGG - chr1_3:59902788-59902807 Msa0129820:intron 45.0%
CTGGATTATCCTGCTGCAAA+AGG + chr1_3:59902814-59902833 None:intergenic 45.0%
!! GTGATTCGGTTTCTCAATGC+TGG - chr1_3:59902938-59902957 Msa0129820:intron 45.0%
! TCACACATTTTGTGCACCAG+AGG - chr1_3:59903067-59903086 Msa0129820:intron 45.0%
!! TTTTTCAGACTCACTCGCCA+GGG + chr1_3:59903882-59903901 None:intergenic 45.0%
!!! TTTTTTCAGACTCACTCGCC+AGG + chr1_3:59903883-59903902 None:intergenic 45.0%
AGCAAGTCATTGTCATCGGT+TGG + chr1_3:59904197-59904216 None:intergenic 45.0%
GCTGGATGGTAACACATCTT+TGG - chr1_3:59904523-59904542 Msa0129820:intron 45.0%
GTCTCTCATATGTGCTCAAG+TGG - chr1_3:59904753-59904772 Msa0129820:CDS 45.0%
!!! CTTTTTTCCCCTCCTGGATA+TGG - chr1_3:59904906-59904925 Msa0129820:intron 45.0%
!! TGACGATGGATTGGAGTTGG+AGG + chr1_3:59901868-59901887 None:intergenic 50.0%
!! TGGTGACGATGGATTGGAGT+TGG + chr1_3:59901871-59901890 None:intergenic 50.0%
!! AGTTGGTGGTGACGATGGAT+TGG + chr1_3:59901877-59901896 None:intergenic 50.0%
!! GAGAAAGTTGGTGGTGACGA+TGG + chr1_3:59901882-59901901 None:intergenic 50.0%
! TGTAGCGGGAAAAGTGACGT+GGG + chr1_3:59901904-59901923 None:intergenic 50.0%
! CAATAAGGGGGGTGTAGGAA+AGG + chr1_3:59901981-59902000 None:intergenic 50.0%
! ACATGCAATAAGGGGGGTGT+AGG + chr1_3:59901986-59902005 None:intergenic 50.0%
GGTTCAGAATTGACGCTGGT+GGG - chr1_3:59902082-59902101 Msa0129820:CDS 50.0%
!! CTGAAGCTTTTGAGGACCAG+CGG + chr1_3:59902149-59902168 None:intergenic 50.0%
! TTGAGATACTAGTGGGCGTG+AGG - chr1_3:59902413-59902432 Msa0129820:intron 50.0%
!! CGTGTAAGGGAGCATTAGAG+GGG + chr1_3:59902734-59902753 None:intergenic 50.0%
!! GACGTGTAAGGGAGCATTAG+AGG + chr1_3:59902736-59902755 None:intergenic 50.0%
! ATTTTCTCCTACCCTTGGGC+TGG - chr1_3:59902883-59902902 Msa0129820:intron 50.0%
! CCTTTTCTCTTCCAGCCCAA+GGG + chr1_3:59902897-59902916 None:intergenic 50.0%
! TCCTTTTCTCTTCCAGCCCA+AGG + chr1_3:59902898-59902917 None:intergenic 50.0%
! TTTTCAGACTCACTCGCCAG+GGG + chr1_3:59903881-59903900 None:intergenic 50.0%
TCACCGAATCGTTCGTGAAC+AGG + chr1_3:59904164-59904183 None:intergenic 50.0%
! CTCCTTCTTGGTGATCACAC+TGG - chr1_3:59904236-59904255 Msa0129820:intron 50.0%
CTCCAGTGTGATCACCAAGA+AGG + chr1_3:59904241-59904260 None:intergenic 50.0%
TGGTGATCACACTGGAGACT+TGG - chr1_3:59904244-59904263 Msa0129820:intron 50.0%
GGTGATCACACTGGAGACTT+GGG - chr1_3:59904245-59904264 Msa0129820:intron 50.0%
GGAGACTTGGGAATGTCTGA+TGG - chr1_3:59904257-59904276 Msa0129820:intron 50.0%
TTAAGTACCAGGTGAAGGGG+TGG - chr1_3:59904658-59904677 Msa0129820:intron 50.0%
!!! ACTGCACTTTTTTCCCCTCC+TGG - chr1_3:59904900-59904919 Msa0129820:intron 50.0%
TGCGACAGTGACATAGACAC+CGG - chr1_3:59905121-59905140 Msa0129820:five_prime_UTR 50.0%
GTGACGTGGGAGAAAGTTGG+TGG + chr1_3:59901891-59901910 None:intergenic 55.0%
! GTGTAGCGGGAAAAGTGACG+TGG + chr1_3:59901905-59901924 None:intergenic 55.0%
GGGTTCAGAATTGACGCTGG+TGG - chr1_3:59902081-59902100 Msa0129820:CDS 55.0%
CTTGCTGCAATTCGTTCCGC+TGG - chr1_3:59902130-59902149 Msa0129820:intron 55.0%
CGCTGGTCCTCAAAAGCTTC+AGG - chr1_3:59902147-59902166 Msa0129820:intron 55.0%
! AGATACTAGTGGGCGTGAGG+TGG - chr1_3:59902416-59902435 Msa0129820:intron 55.0%
GTCACACTCCAAACGTGCAG+TGG - chr1_3:59902539-59902558 Msa0129820:CDS 55.0%
ACACTCCAAACGTGCAGTGG+TGG - chr1_3:59902542-59902561 Msa0129820:CDS 55.0%
CACTCCAAACGTGCAGTGGT+GGG - chr1_3:59902543-59902562 Msa0129820:CDS 55.0%
! CAGTCATGGCCTTTTGCAGC+AGG - chr1_3:59902802-59902821 Msa0129820:intron 55.0%
TTCTCTTCCAGCCCAAGGGT+AGG + chr1_3:59902893-59902912 None:intergenic 55.0%
! CCCTTGGGCTGGAAGAGAAA+AGG - chr1_3:59902894-59902913 Msa0129820:intron 55.0%
GCGCCTGTTCACGAACGATT+CGG - chr1_3:59904158-59904177 Msa0129820:CDS 55.0%
CATGGGCGCATCATTCTGCA+GGG + chr1_3:59904715-59904734 None:intergenic 55.0%
ACATGGGCGCATCATTCTGC+AGG + chr1_3:59904716-59904735 None:intergenic 55.0%
TGCAGAATGATGCGCCCATG+TGG - chr1_3:59904715-59904734 Msa0129820:CDS 55.0%
GCAGAATGATGCGCCCATGT+GGG - chr1_3:59904716-59904735 Msa0129820:CDS 55.0%
TTTCCCCTCCTGGATATGGC+TGG - chr1_3:59904910-59904929 Msa0129820:CDS 55.0%
ATCGCCAGCCATATCCAGGA+GGG + chr1_3:59904917-59904936 None:intergenic 55.0%
AATCGCCAGCCATATCCAGG+AGG + chr1_3:59904918-59904937 None:intergenic 55.0%
GCTAATCGCCAGCCATATCC+AGG + chr1_3:59904921-59904940 None:intergenic 55.0%
ACTGCCCACCACTGCACGTT+TGG + chr1_3:59902550-59902569 None:intergenic 60.0%
TCGCCAGCCATATCCAGGAG+GGG + chr1_3:59904916-59904935 None:intergenic 60.0%
TACTCGGCCACCCCTTCACC+TGG + chr1_3:59904668-59904687 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr1_3 gene 59901652 59905194 59901652 ID=Msa0129820;Name=Msa0129820
chr1_3 mRNA 59901652 59905194 59901652 ID=Msa0129820-mRNA-1;Parent=Msa0129820;Name=Msa0129820-mRNA-1;_AED=0.08;_eAED=0.08;_QI=202|1|1|1|1|1|10|412|343
chr1_3 exon 59901652 59902126 59901652 ID=Msa0129820-mRNA-1:exon:19646;Parent=Msa0129820-mRNA-1
chr1_3 exon 59902336 59902396 59902336 ID=Msa0129820-mRNA-1:exon:19645;Parent=Msa0129820-mRNA-1
chr1_3 exon 59902531 59902738 59902531 ID=Msa0129820-mRNA-1:exon:19644;Parent=Msa0129820-mRNA-1
chr1_3 exon 59903152 59903245 59903152 ID=Msa0129820-mRNA-1:exon:19643;Parent=Msa0129820-mRNA-1
chr1_3 exon 59903365 59903421 59903365 ID=Msa0129820-mRNA-1:exon:19642;Parent=Msa0129820-mRNA-1
chr1_3 exon 59903570 59903693 59903570 ID=Msa0129820-mRNA-1:exon:19641;Parent=Msa0129820-mRNA-1
chr1_3 exon 59903913 59904045 59903913 ID=Msa0129820-mRNA-1:exon:19640;Parent=Msa0129820-mRNA-1
chr1_3 exon 59904140 59904200 59904140 ID=Msa0129820-mRNA-1:exon:19639;Parent=Msa0129820-mRNA-1
chr1_3 exon 59904678 59904822 59904678 ID=Msa0129820-mRNA-1:exon:19638;Parent=Msa0129820-mRNA-1
chr1_3 exon 59904907 59905194 59904907 ID=Msa0129820-mRNA-1:exon:19637;Parent=Msa0129820-mRNA-1
chr1_3 five_prime_UTR 59904993 59905194 59904993 ID=Msa0129820-mRNA-1:five_prime_utr;Parent=Msa0129820-mRNA-1
chr1_3 CDS 59904907 59904992 59904907 ID=Msa0129820-mRNA-1:cds;Parent=Msa0129820-mRNA-1
chr1_3 CDS 59904678 59904822 59904678 ID=Msa0129820-mRNA-1:cds;Parent=Msa0129820-mRNA-1
chr1_3 CDS 59904140 59904200 59904140 ID=Msa0129820-mRNA-1:cds;Parent=Msa0129820-mRNA-1
chr1_3 CDS 59903913 59904045 59903913 ID=Msa0129820-mRNA-1:cds;Parent=Msa0129820-mRNA-1
chr1_3 CDS 59903570 59903693 59903570 ID=Msa0129820-mRNA-1:cds;Parent=Msa0129820-mRNA-1
chr1_3 CDS 59903365 59903421 59903365 ID=Msa0129820-mRNA-1:cds;Parent=Msa0129820-mRNA-1
chr1_3 CDS 59903152 59903245 59903152 ID=Msa0129820-mRNA-1:cds;Parent=Msa0129820-mRNA-1
chr1_3 CDS 59902531 59902738 59902531 ID=Msa0129820-mRNA-1:cds;Parent=Msa0129820-mRNA-1
chr1_3 CDS 59902336 59902396 59902336 ID=Msa0129820-mRNA-1:cds;Parent=Msa0129820-mRNA-1
chr1_3 CDS 59902064 59902126 59902064 ID=Msa0129820-mRNA-1:cds;Parent=Msa0129820-mRNA-1
chr1_3 three_prime_UTR 59901652 59902063 59901652 ID=Msa0129820-mRNA-1:three_prime_utr;Parent=Msa0129820-mRNA-1
Gene Sequence

>Msa0129820

ATGAGTTATCGCCTCCAACTCCAATCCATCGTCACCACCAACTTTCTCCCACGTCACTTTTCCCGCTACACTTCTTCAACATCAAGGGTTTCGTTTTCTACATTTTGTTGTGGAAAACATTTGGAAATGGAGGATATCAAATTGGGTTCAGAATTGACGCTGGTGGGTGATCCTGTTTTGCTCCACAACAAACTTGCTGCAATTCGTTCCGCTGGTCCTCAAAAGCTTCAGGTGATCGCTGATTTTGATGCCACATTAACAAAGTTTTGGGTTAATGGAACTCGCGGCCAAAGCAGTCATGGCCTTTTGCAGCAGGATAATCCAGAATATGATGCCAAAAGGCAGCAGTTATATGAACATTACCATCCATTGGAATTTTCTCCTACCCTTGGGCTGGAAGAGAAAAGGAAACTCATGGTAGAGTGGTGGGGAAAAACGCATGCTCTTCTTATTGAAGGAGGACTTACATATGAATCAATAAAACAATCAGTTGCTAATGCTAACATAGCTTTTAGGGAAGGTGTTTCTGAGCTTTTTGAATTTTTGGAGGAAAGAGACATTCCTGTATTAATATTCTCTGCAGGGCTTGCTGATATCATTGAAGAGGTTCTAAGGCAGAAGCTTCGCAGATCCTTCAAAAATGTGAAGATAGTATCCAACAGGATGGTATTTAACAATGGCCAACTTGTATCTTTTAAAGGAAAATTGATTCACAGCTTAAATAAAAATGAGCATGCTCTTGATATGGCTGCGCCTGTTCACGAACGATTCGGTGATATTGATGGTCCAACCGATGACAATGACTTGCTCAAGAAGAGAACCAATGTTCTCCTTCTTGGTGATCACACTGGAGACTTGGGAATGTCTGATGGTTTAAATTACGATACTCGAATTTCTGTGGGATTTTTGAACCACAACGTTGAGAACTCACTTAGCTGCTATCGAGAAGCTTTTGATGTTGTTTTAATGAATGATGCGCCCATGTGGGAAGTTATCAAAGTGGTCTCTCATATGTGCTCAAGTGGGAACTGA

Protein sequence

>Msa0129820

MSYRLQLQSIVTTNFLPRHFSRYTSSTSRVSFSTFCCGKHLEMEDIKLGSELTLVGDPVLLHNKLAAIRSAGPQKLQVIADFDATLTKFWVNGTRGQSSHGLLQQDNPEYDAKRQQLYEHYHPLEFSPTLGLEEKRKLMVEWWGKTHALLIEGGLTYESIKQSVANANIAFREGVSELFEFLEERDIPVLIFSAGLADIIEEVLRQKLRRSFKNVKIVSNRMVFNNGQLVSFKGKLIHSLNKNEHALDMAAPVHERFGDIDGPTDDNDLLKKRTNVLLLGDHTGDLGMSDGLNYDTRISVGFLNHNVENSLSCYREAFDVVLMNDAPMWEVIKVVSHMCSSGN*