AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1395200


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1395200 MtrunA17_Chr1g0196961 94.767 344 6 2 1 344 1 332 0.0 666
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1395200 AT2G38680.1 67.763 304 93 4 42 342 40 341 7.22e-146 416

Find 94 sgRNAs with CRISPR-Local

Find 243 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGAAATGGAGGATATCAAAT+TGG 0.201664 tig0021921:+38631 Msa1395200:CDS
ATGCCACATTAACAAAGTTT+TGG 0.238917 tig0021921:+39061 Msa1395200:CDS
CGCTGGTCCTCAAAAGCTTC+AGG 0.241520 tig0021921:+38721 Msa1395200:CDS
CTTCATAAGGAGAAATTAAT+AGG 0.248523 tig0021921:-41238 None:intergenic
TCCAATATTAACAGGTTCTA+AGG 0.257059 tig0021921:+39985 Msa1395200:intron
AGAACCAATGTTCTCCTTCT+TGG 0.265210 tig0021921:+40614 Msa1395200:CDS
TCAGCCTCTGCATGAATTAC+AGG 0.322297 tig0021921:-38287 None:intergenic
GCTAAGAGTATATGGTTAAC+TGG 0.327198 tig0021921:-41179 None:intergenic
TTCATATAACTGCTGCCTTT+TGG 0.338973 tig0021921:-39242 None:intergenic
ATGATACTGCTAAGAGTATA+TGG 0.344765 tig0021921:-41187 None:intergenic
TCACCGAACCGTTCGTGAAC+AGG 0.354267 tig0021921:-40551 None:intergenic
TCATTTGCTTAAAATATTAC+CGG 0.362053 tig0021921:-41530 None:intergenic
AGTTTGTTGTGGAGCAAAAC+AGG 0.387622 tig0021921:-38683 None:intergenic
AAATGAGCATGCTCTTGATA+TGG 0.389669 tig0021921:+40523 Msa1395200:CDS
ACTTGTTAGCATTCTTCATA+AGG 0.393716 tig0021921:-41251 None:intergenic
CAATGAGACGTGTTTATCAT+AGG 0.396301 tig0021921:-38228 None:intergenic
TTGTGGAAAACATTTGGAAA+TGG 0.410077 tig0021921:+38616 Msa1395200:CDS
GAAATGGAGGATATCAAATT+GGG 0.419430 tig0021921:+38632 Msa1395200:CDS
TTCAGAATTGACGCTGGTGG+TGG 0.419541 tig0021921:+38655 Msa1395200:CDS
CCTGTATTAATATTCTCTGC+AGG 0.422018 tig0021921:+39835 Msa1395200:CDS
TGCTTCATTGTAAACATACA+TGG 0.428360 tig0021921:-41365 None:intergenic
ACGCATGCTCTTCTTATTGA+AGG 0.428415 tig0021921:+39561 Msa1395200:CDS
CCCTTGGGCTGGAAGAGAAA+AGG 0.437854 tig0021921:+39293 Msa1395200:CDS
TTTCCCCTCCTGGATATGGC+TGG 0.439476 tig0021921:+41300 Msa1395200:three_prime_UTR
CCTGCAGAGAATATTAATAC+AGG 0.451901 tig0021921:-39835 None:intergenic
TGGTGATCACACTGGAGACT+TGG 0.455229 tig0021921:+40634 Msa1395200:CDS
GGAGAAATTAATAGGAACCT+TGG 0.457417 tig0021921:-41230 None:intergenic
GAGAAATTAATAGGAACCTT+GGG 0.466094 tig0021921:-41229 None:intergenic
GAACGGTTCGGTGATATTGA+TGG 0.466660 tig0021921:+40560 Msa1395200:CDS
CTGGATTATCCTGCTGCAAA+AGG 0.467977 tig0021921:-39210 None:intergenic
AACCCAAAACTTTGTTAATG+TGG 0.470399 tig0021921:-39064 None:intergenic
ATGTGAAGATAGTATCCAAC+AGG 0.474848 tig0021921:+40033 Msa1395200:CDS
CTTGCTGCAATTCGTTCCGC+TGG 0.481743 tig0021921:+38704 Msa1395200:CDS
AGTTGGTGGTGACGATGGAT+TGG 0.487760 tig0021921:-38446 None:intergenic
AGCAAGTCATTGTCATCAGT+TGG 0.490335 tig0021921:-40584 None:intergenic
GCTTACATAGTTAAGTTAAG+TGG 0.491803 tig0021921:-38373 None:intergenic
GAGCCTGTTCACGAACGGTT+CGG 0.493492 tig0021921:+40548 Msa1395200:CDS
AGACGTGTTTATCATAGGTT+CGG 0.493867 tig0021921:-38223 None:intergenic
GCTAATCGCCAGCCATATCC+AGG 0.493885 tig0021921:-41308 None:intergenic
TGGTGACGATGGATTGGAGT+TGG 0.494711 tig0021921:-38440 None:intergenic
TACGATACTCGAATTTCTGT+GGG 0.505866 tig0021921:+40677 Msa1395200:CDS
TGGAAAACATTTGGAAATGG+AGG 0.511488 tig0021921:+38619 Msa1395200:CDS
CACCTTTAAAAGATACAAGT+TGG 0.511666 tig0021921:-40073 None:intergenic
ATCCAGAATATGATGCCAAA+AGG 0.511735 tig0021921:+39227 Msa1395200:CDS
CAGGTCACAAGTAAAATGAA+TGG 0.513317 tig0021921:-38268 None:intergenic
ATTGTTAAATACCATCCTGT+TGG 0.514081 tig0021921:-40048 None:intergenic
ATATGAACATTACCATCCAT+TGG 0.515894 tig0021921:+39258 Msa1395200:CDS
CATGTGGGAAGTTATCAAAC+TGG 0.516934 tig0021921:+41121 Msa1395200:CDS
ATTAGCAGTTATGTTATGCT+AGG 0.518158 tig0021921:+41325 Msa1395200:three_prime_UTR
CTGTATTAATATTCTCTGCA+GGG 0.521088 tig0021921:+39836 Msa1395200:CDS
CTCCTTCTTGGTGATCACAC+TGG 0.541831 tig0021921:+40626 Msa1395200:CDS
GTCTCTCATATGTGCTCAAG+TGG 0.544275 tig0021921:+41143 Msa1395200:CDS
GGTGATCACACTGGAGACTT+GGG 0.548044 tig0021921:+40635 Msa1395200:CDS
TCAGAATTGACGCTGGTGGT+GGG 0.550336 tig0021921:+38656 Msa1395200:CDS
GAATTGCAGCAAGTTTGTTG+TGG 0.553040 tig0021921:-38694 None:intergenic
GCTACACTTCTTCAACATCA+AGG 0.560582 tig0021921:+38490 Msa1395200:CDS
AAAGTGACGTGGGAGAAAGT+TGG 0.564371 tig0021921:-38463 None:intergenic
CAGTTTGATAACTTCCCACA+TGG 0.565167 tig0021921:-41120 None:intergenic
GAGAAAGTTGGTGGTGACGA+TGG 0.566081 tig0021921:-38451 None:intergenic
TAGGAGAAAATTCCAATGGA+TGG 0.567633 tig0021921:-39270 None:intergenic
TGATGTTGAAGAAGTGTAGC+GGG 0.570667 tig0021921:-38487 None:intergenic
GGAGACTTGGGAATGTCTGA+TGG 0.575829 tig0021921:+40647 Msa1395200:CDS
TTACGATACTCGAATTTCTG+TGG 0.585256 tig0021921:+40676 Msa1395200:CDS
GCTTCATTGTAAACATACAT+GGG 0.592692 tig0021921:-41364 None:intergenic
TGACGATGGATTGGAGTTGG+AGG 0.602766 tig0021921:-38437 None:intergenic
AAAGGAAACTCATGGTAGAG+TGG 0.614036 tig0021921:+39311 Msa1395200:CDS
TTCTCTTCCAGCCCAAGGGT+AGG 0.615641 tig0021921:-39289 None:intergenic
CTCCAGTGTGATCACCAAGA+AGG 0.618740 tig0021921:-40628 None:intergenic
TGGCTGAGCCTGTTCACGAA+CGG 0.620178 tig0021921:+40543 Msa1395200:CDS
CATGCTCTTCTTATTGAAGG+AGG 0.621492 tig0021921:+39564 Msa1395200:CDS
AGGGTAGGAGAAAATTCCAA+TGG 0.624608 tig0021921:-39274 None:intergenic
GGAAGAGAAAAGGAAACTCA+TGG 0.628987 tig0021921:+39303 Msa1395200:CDS
GTGACGTGGGAGAAAGTTGG+TGG 0.633859 tig0021921:-38460 None:intergenic
ATCGCCAGCCATATCCAGGA+GGG 0.634611 tig0021921:-41304 None:intergenic
GCTTGCTGATATCATTGAAG+AGG 0.634896 tig0021921:+39858 Msa1395200:CDS
AACAGGATGGTATTTAACAA+TGG 0.634907 tig0021921:+40050 Msa1395200:CDS
GAGTCATTTCTAGGCAGTCA+TGG 0.643405 tig0021921:+39187 Msa1395200:intron
TGCAGAATGATGCGCCCATG+TGG 0.644000 tig0021921:+41105 Msa1395200:intron
GGCGATAACTCATTTGAGTG+TGG 0.645636 tig0021921:-38416 None:intergenic
GAAGATAGTATCCAACAGGA+TGG 0.654156 tig0021921:+40037 Msa1395200:CDS
ATCACCAAGAAGGAGAACAT+TGG 0.655582 tig0021921:-40618 None:intergenic
GTGTAGCGGGAAAAGTGACG+TGG 0.663698 tig0021921:-38474 None:intergenic
ATTGGGTTCAGAATTGACGC+TGG 0.663874 tig0021921:+38649 Msa1395200:CDS
TCTCTCATATGTGCTCAAGT+GGG 0.665937 tig0021921:+41144 Msa1395200:CDS
GGGTTCAGAATTGACGCTGG+TGG 0.671068 tig0021921:+38652 Msa1395200:CDS
AGTTTGATAACTTCCCACAT+GGG 0.678685 tig0021921:-41119 None:intergenic
GCAGAATGATGCGCCCATGT+GGG 0.682785 tig0021921:+41106 Msa1395200:intron
TCGCCAGCCATATCCAGGAG+GGG 0.683257 tig0021921:-41303 None:intergenic
TTGATGTTGAAGAAGTGTAG+CGG 0.688175 tig0021921:-38488 None:intergenic
TAAGTGAGTTCTCAACGTTG+TGG 0.688216 tig0021921:-40843 None:intergenic
TGTAGCGGGAAAAGTGACGT+GGG 0.689625 tig0021921:-38473 None:intergenic
TGCGACAGTGACATAGACAC+CGG 0.704097 tig0021921:+41511 Msa1395200:three_prime_UTR
GTGACCTGTAATTCATGCAG+AGG 0.707599 tig0021921:+38283 Msa1395200:five_prime_UTR
AATCGCCAGCCATATCCAGG+AGG 0.724907 tig0021921:-41305 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATGTAATTTTTTTTCTTTTA+AGG + tig0021921:38573-38592 Msa1395200:intron 10.0%
!!! TGTAATTTTTTTTCTTTTAA+GGG + tig0021921:38574-38593 Msa1395200:intron 10.0%
!! AAATATAAATCTTAGAATTT+GGG - tig0021921:39013-39032 None:intergenic 10.0%
!! AAAATATAAATCTTAGAATT+TGG - tig0021921:39014-39033 None:intergenic 10.0%
!!! ATTTATATTTTCTTTTTTGT+AGG + tig0021921:39023-39042 Msa1395200:intron 10.0%
!!! TATTCTGTTTTTTTTTTTAT+GGG + tig0021921:39394-39413 Msa1395200:intron 10.0%
!! ATAATAACTAAATTAATGTT+TGG - tig0021921:40953-40972 None:intergenic 10.0%
!! AAAAAAATTACATGCAATAA+GGG - tig0021921:38566-38585 None:intergenic 15.0%
!! AAAAAAAATTACATGCAATA+AGG - tig0021921:38567-38586 None:intergenic 15.0%
!!! TCATCTTAAGTTTTTATATT+CGG - tig0021921:38891-38910 None:intergenic 15.0%
!!! GTATTCTGTTTTTTTTTTTA+TGG + tig0021921:39393-39412 Msa1395200:intron 15.0%
!! AAAAATAACAAAATGGAAAA+TGG - tig0021921:39800-39819 None:intergenic 15.0%
!! AAAAAATTACATGCAATAAG+GGG - tig0021921:38565-38584 None:intergenic 20.0%
!! TCAAGCATTATTAATGAAAT+GGG - tig0021921:38758-38777 None:intergenic 20.0%
!! TTCAAGCATTATTAATGAAA+TGG - tig0021921:38759-38778 None:intergenic 20.0%
!!! TTAAGATTTGGTGTATTATT+AGG + tig0021921:39529-39548 Msa1395200:intron 20.0%
!! ATATATTTGTCAAAGAAAGA+TGG - tig0021921:39687-39706 None:intergenic 20.0%
!!! TGATATGTTCATTTTATATC+AGG + tig0021921:39719-39738 Msa1395200:intron 20.0%
!!! TTTCCATTTTGTTATTTTTC+AGG + tig0021921:39801-39820 Msa1395200:intron 20.0%
!! TTTCCTGAAAAATAACAAAA+TGG - tig0021921:39807-39826 None:intergenic 20.0%
!!! AAGTCTATTTTGTTTTATGT+TGG + tig0021921:39887-39906 Msa1395200:intron 20.0%
!! AATACACAATAAATGAAAGT+TGG - tig0021921:40110-40129 None:intergenic 20.0%
!!! TATGCAAATATATTTTTCAG+AGG + tig0021921:40155-40174 Msa1395200:intron 20.0%
!! TTAATTATTATGTAATTCCC+CGG - tig0021921:40181-40200 None:intergenic 20.0%
!! CATAATAATTAATTGCCTTT+AGG + tig0021921:40189-40208 Msa1395200:intron 20.0%
!! TAACTAAATTAATGTTTGGA+AGG - tig0021921:40949-40968 None:intergenic 20.0%
!! TCATTTGCTTAAAATATTAC+CGG - tig0021921:41533-41552 None:intergenic 20.0%
!!! ATTTTGTTTTCCCATTTTTC+TGG + tig0021921:38345-38364 Msa1395200:five_prime_UTR 25.0%
! AAAAATTACATGCAATAAGG+GGG - tig0021921:38564-38583 None:intergenic 25.0%
!!! ATTTTGTTGTGGAAAACATT+TGG + tig0021921:38610-38629 Msa1395200:CDS 25.0%
! CAAGCATTATTAATGAAATG+GGG - tig0021921:38757-38776 None:intergenic 25.0%
!! GTATCTCAATTTTACAAAAG+TGG - tig0021921:38801-38820 None:intergenic 25.0%
! TTGTAAAATTGAGATACTAG+TGG + tig0021921:38804-38823 Msa1395200:intron 25.0%
! TGTAAAATTGAGATACTAGT+GGG + tig0021921:38805-38824 Msa1395200:intron 25.0%
!!! TTAACAAAGTTTTGGGTTAA+TGG + tig0021921:39069-39088 Msa1395200:CDS 25.0%
! AATAGTCATGTAACATACTT+TGG - tig0021921:39104-39123 None:intergenic 25.0%
!! TAATGCTAACATAGCTTTTA+GGG + tig0021921:39620-39639 Msa1395200:CDS 25.0%
!! TTCTGAGCTTTTTGAATTTT+TGG + tig0021921:39650-39669 Msa1395200:CDS 25.0%
!!! TATTTTGTTTTATGTTGGCA+AGG + tig0021921:39892-39911 Msa1395200:intron 25.0%
!! ATTTCTCTTCATTTTCTTGT+CGG + tig0021921:39924-39943 Msa1395200:intron 25.0%
!! TACTATCTTCACATTTTTGA+AGG - tig0021921:40027-40046 None:intergenic 25.0%
! TTTATTGTGTATTTGTTTGC+TGG + tig0021921:40117-40136 Msa1395200:intron 25.0%
! ATTTAATTATGTTTAAGCCC+TGG + tig0021921:40259-40278 Msa1395200:intron 25.0%
!! ATTTTGTATAGGAGAAAACA+AGG - tig0021921:40379-40398 None:intergenic 25.0%
!! TCGAAAATCTGATTTTGTAT+AGG - tig0021921:40390-40409 None:intergenic 25.0%
! GAGAAGTAAAAATTAAGAAC+TGG - tig0021921:40464-40483 None:intergenic 25.0%
! CCAGAAAAAAAATTAAGTCA+GGG - tig0021921:40802-40821 None:intergenic 25.0%
! ACCAGAAAAAAAATTAAGTC+AGG - tig0021921:40803-40822 None:intergenic 25.0%
!!! AGCTTTTGATGTTGTTTTAA+TGG + tig0021921:40879-40898 Msa1395200:CDS 25.0%
!! CTTCCTATATGATTTGTATA+AGG + tig0021921:40999-41018 Msa1395200:intron 25.0%
! TCACCTTATACAAATCATAT+AGG - tig0021921:41005-41024 None:intergenic 25.0%
! TATTTCTTATGTTAAGTACC+AGG + tig0021921:41037-41056 Msa1395200:intron 25.0%
! GCAAGTTAAAATTAGATACT+CGG - tig0021921:41074-41093 None:intergenic 25.0%
! CTTCATAAGGAGAAATTAAT+AGG - tig0021921:41241-41260 None:intergenic 25.0%
! TATGCAAAAGCAAAAAATCA+GGG - tig0021921:41463-41482 None:intergenic 25.0%
! ATATGCAAAAGCAAAAAATC+AGG - tig0021921:41464-41483 None:intergenic 25.0%
GCTTACATAGTTAAGTTAAG+TGG - tig0021921:38376-38395 None:intergenic 30.0%
AAAGGTAAAAAAGAGAAGAG+GGG - tig0021921:38534-38553 None:intergenic 30.0%
GAAAGGTAAAAAAGAGAAGA+GGG - tig0021921:38535-38554 None:intergenic 30.0%
AAAATTACATGCAATAAGGG+GGG - tig0021921:38563-38582 None:intergenic 30.0%
! TCGTTTTCTACATTTTGTTG+TGG + tig0021921:38599-38618 Msa1395200:CDS 30.0%
TTGTGGAAAACATTTGGAAA+TGG + tig0021921:38616-38635 Msa1395200:CDS 30.0%
GAAATGGAGGATATCAAATT+GGG + tig0021921:38632-38651 Msa1395200:CDS 30.0%
! GTGTTTAAGAGTCTCATTTT+TGG + tig0021921:38837-38856 Msa1395200:intron 30.0%
!! TTTAAGAGTCTCATTTTTGG+AGG + tig0021921:38840-38859 Msa1395200:intron 30.0%
!! TTAAGAGTCTCATTTTTGGA+GGG + tig0021921:38841-38860 Msa1395200:intron 30.0%
!! TCATTTTTGGAGGGTTTTTT+TGG + tig0021921:38850-38869 Msa1395200:intron 30.0%
!! CATTTTTGGAGGGTTTTTTT+GGG + tig0021921:38851-38870 Msa1395200:intron 30.0%
! ACCTTACAAATCTGTTTTGT+AGG + tig0021921:38973-38992 Msa1395200:intron 30.0%
TCCTACAAAACAGATTTGTA+AGG - tig0021921:38977-38996 None:intergenic 30.0%
! ATGCCACATTAACAAAGTTT+TGG + tig0021921:39061-39080 Msa1395200:CDS 30.0%
! TGCCACATTAACAAAGTTTT+GGG + tig0021921:39062-39081 Msa1395200:CDS 30.0%
AACCCAAAACTTTGTTAATG+TGG - tig0021921:39067-39086 None:intergenic 30.0%
! TCCTAATTTTTGACGTGTAA+GGG - tig0021921:39146-39165 None:intergenic 30.0%
! TTCCTAATTTTTGACGTGTA+AGG - tig0021921:39147-39166 None:intergenic 30.0%
TATCTAATCGAGTCATTTCT+AGG + tig0021921:39178-39197 Msa1395200:intron 30.0%
ATATGAACATTACCATCCAT+TGG + tig0021921:39258-39277 Msa1395200:CDS 30.0%
TAACTAGTAAGTAAACTCTG+GGG - tig0021921:39439-39458 None:intergenic 30.0%
GTAACTAGTAAGTAAACTCT+GGG - tig0021921:39440-39459 None:intergenic 30.0%
TGTAACTAGTAAGTAAACTC+TGG - tig0021921:39441-39460 None:intergenic 30.0%
TGATGCTGTAACTTAAGATT+TGG + tig0021921:39517-39536 Msa1395200:intron 30.0%
!! AGATTTGGTGTATTATTAGG+TGG + tig0021921:39532-39551 Msa1395200:intron 30.0%
!! GATTTGGTGTATTATTAGGT+GGG + tig0021921:39533-39552 Msa1395200:intron 30.0%
!! ATTTGGTGTATTATTAGGTG+GGG + tig0021921:39534-39553 Msa1395200:intron 30.0%
! CTAATGCTAACATAGCTTTT+AGG + tig0021921:39619-39638 Msa1395200:CDS 30.0%
!! TGAGCTTTTTGAATTTTTGG+AGG + tig0021921:39653-39672 Msa1395200:CDS 30.0%
CTGTATTAATATTCTCTGCA+GGG + tig0021921:39836-39855 Msa1395200:CDS 30.0%
!!! TCGCTTTTTCCAATATTAAC+AGG + tig0021921:39977-39996 Msa1395200:intron 30.0%
TCCAATATTAACAGGTTCTA+AGG + tig0021921:39985-40004 Msa1395200:intron 30.0%
ATTGTTAAATACCATCCTGT+TGG - tig0021921:40051-40070 None:intergenic 30.0%
AACAGGATGGTATTTAACAA+TGG + tig0021921:40050-40069 Msa1395200:CDS 30.0%
! CACCTTTAAAAGATACAAGT+TGG - tig0021921:40076-40095 None:intergenic 30.0%
!! CAAATATATTTTTCAGAGGC+CGG + tig0021921:40159-40178 Msa1395200:intron 30.0%
!! AAATATATTTTTCAGAGGCC+GGG + tig0021921:40160-40179 Msa1395200:intron 30.0%
!! TACTTCTCAATTTTGATCAC+AGG + tig0021921:40476-40495 Msa1395200:intron 30.0%
GAGCTCAATTAATGTCTATA+AGG + tig0021921:40755-40774 Msa1395200:intron 30.0%
!!! CCCTGACTTAATTTTTTTTC+TGG + tig0021921:40799-40818 Msa1395200:intron 30.0%
!! TTAATGGTAAGTTGATTAGC+TGG + tig0021921:40895-40914 Msa1395200:intron 30.0%
ATTAATGTTTGGAAGGAACA+AGG - tig0021921:40942-40961 None:intergenic 30.0%
! ATGATACTGCTAAGAGTATA+TGG - tig0021921:41190-41209 None:intergenic 30.0%
GAGAAATTAATAGGAACCTT+GGG - tig0021921:41232-41251 None:intergenic 30.0%
! ACTTGTTAGCATTCTTCATA+AGG - tig0021921:41254-41273 None:intergenic 30.0%
ATTAGCAGTTATGTTATGCT+AGG + tig0021921:41325-41344 Msa1395200:three_prime_UTR 30.0%
GCTTCATTGTAAACATACAT+GGG - tig0021921:41367-41386 None:intergenic 30.0%
TGCTTCATTGTAAACATACA+TGG - tig0021921:41368-41387 None:intergenic 30.0%
CAATGAGACGTGTTTATCAT+AGG - tig0021921:38231-38250 None:intergenic 35.0%
CAGGTCACAAGTAAAATGAA+TGG - tig0021921:38271-38290 None:intergenic 35.0%
!! AGTGGTGTTACCAGAAAAAT+GGG - tig0021921:38358-38377 None:intergenic 35.0%
!! AAGTGGTGTTACCAGAAAAA+TGG - tig0021921:38359-38378 None:intergenic 35.0%
! TTGATGTTGAAGAAGTGTAG+CGG - tig0021921:38491-38510 None:intergenic 35.0%
AAGGTAAAAAAGAGAAGAGG+GGG - tig0021921:38533-38552 None:intergenic 35.0%
GGAAAGGTAAAAAAGAGAAG+AGG - tig0021921:38536-38555 None:intergenic 35.0%
TGGAAAACATTTGGAAATGG+AGG + tig0021921:38619-38638 Msa1395200:CDS 35.0%
GGAAATGGAGGATATCAAAT+TGG + tig0021921:38631-38650 Msa1395200:CDS 35.0%
! GAAAAAACCTGAAGCTTTTG+AGG - tig0021921:38731-38750 None:intergenic 35.0%
TCCCTTACACGTCAAAAATT+AGG + tig0021921:39142-39161 Msa1395200:intron 35.0%
ATCCAGAATATGATGCCAAA+AGG + tig0021921:39227-39246 Msa1395200:CDS 35.0%
! TTCATATAACTGCTGCCTTT+TGG - tig0021921:39245-39264 None:intergenic 35.0%
TAGGAGAAAATTCCAATGGA+TGG - tig0021921:39273-39292 None:intergenic 35.0%
! CAATGCTGGTCTACATATAT+AGG + tig0021921:39351-39370 Msa1395200:intron 35.0%
AACTAGTAAGTAAACTCTGG+GGG - tig0021921:39438-39457 None:intergenic 35.0%
ATTGAATATCACTGTACCTC+TGG - tig0021921:39484-39503 None:intergenic 35.0%
CCTGCAGAGAATATTAATAC+AGG - tig0021921:39838-39857 None:intergenic 35.0%
CCTGTATTAATATTCTCTGC+AGG + tig0021921:39835-39854 Msa1395200:CDS 35.0%
GCCTTAGAACCTGTTAATAT+TGG - tig0021921:39989-40008 None:intergenic 35.0%
ATGTGAAGATAGTATCCAAC+AGG + tig0021921:40033-40052 Msa1395200:CDS 35.0%
! GGCCAACTTGTATCTTTTAA+AGG + tig0021921:40071-40090 Msa1395200:CDS 35.0%
!! AATATATTTTTCAGAGGCCG+GGG + tig0021921:40161-40180 Msa1395200:intron 35.0%
! TAATTGCCTTTAGGTTTCAC+TGG + tig0021921:40198-40217 Msa1395200:intron 35.0%
GTATTACCAGTGAAACCTAA+AGG - tig0021921:40207-40226 None:intergenic 35.0%
AAATGAGCATGCTCTTGATA+TGG + tig0021921:40523-40542 Msa1395200:CDS 35.0%
TTACGATACTCGAATTTCTG+TGG + tig0021921:40676-40695 Msa1395200:CDS 35.0%
TACGATACTCGAATTTCTGT+GGG + tig0021921:40677-40696 Msa1395200:CDS 35.0%
AAATCACAGCAATTAGAGTC+TGG - tig0021921:40725-40744 None:intergenic 35.0%
!! CTGGTATTTTGAATTGTTGC+AGG + tig0021921:40818-40837 Msa1395200:intron 35.0%
TTATGTTAAGTACCAGGTGA+AGG + tig0021921:41043-41062 Msa1395200:intron 35.0%
TATGTTAAGTACCAGGTGAA+GGG + tig0021921:41044-41063 Msa1395200:intron 35.0%
! AGTTTGATAACTTCCCACAT+GGG - tig0021921:41122-41141 None:intergenic 35.0%
! GCTAAGAGTATATGGTTAAC+TGG - tig0021921:41182-41201 None:intergenic 35.0%
! TTTTTGTCTTACACATCCCA+AGG + tig0021921:41213-41232 Msa1395200:three_prime_UTR 35.0%
GGAGAAATTAATAGGAACCT+TGG - tig0021921:41233-41252 None:intergenic 35.0%
! ATTTTCTGTTGCGATTGTGA+GGG + tig0021921:41418-41437 Msa1395200:three_prime_UTR 35.0%
! TGATGTTGAAGAAGTGTAGC+GGG - tig0021921:38490-38509 None:intergenic 40.0%
GCTACACTTCTTCAACATCA+AGG + tig0021921:38490-38509 Msa1395200:CDS 40.0%
!! AGTTTGTTGTGGAGCAAAAC+AGG - tig0021921:38686-38705 None:intergenic 40.0%
!! GAATTGCAGCAAGTTTGTTG+TGG - tig0021921:38697-38716 None:intergenic 40.0%
!!! TTTTGGAGGGTTTTTTTGGG+AGG + tig0021921:38854-38873 Msa1395200:intron 40.0%
!!! TTTGGAGGGTTTTTTTGGGA+GGG + tig0021921:38855-38874 Msa1395200:intron 40.0%
!!! TTTTGGGTTAATGGAACTCG+CGG + tig0021921:39078-39097 Msa1395200:CDS 40.0%
! TGCCTTTTGGCATCATATTC+TGG - tig0021921:39232-39251 None:intergenic 40.0%
AGGGTAGGAGAAAATTCCAA+TGG - tig0021921:39277-39296 None:intergenic 40.0%
! TTGGAATTTTCTCCTACCCT+TGG + tig0021921:39277-39296 Msa1395200:CDS 40.0%
! TGGAATTTTCTCCTACCCTT+GGG + tig0021921:39278-39297 Msa1395200:CDS 40.0%
GGAAGAGAAAAGGAAACTCA+TGG + tig0021921:39303-39322 Msa1395200:CDS 40.0%
AAAGGAAACTCATGGTAGAG+TGG + tig0021921:39311-39330 Msa1395200:CDS 40.0%
TGGTAGAGTGGTATGTGATT+CGG + tig0021921:39323-39342 Msa1395200:intron 40.0%
ACGCATGCTCTTCTTATTGA+AGG + tig0021921:39561-39580 Msa1395200:CDS 40.0%
CATGCTCTTCTTATTGAAGG+AGG + tig0021921:39564-39583 Msa1395200:CDS 40.0%
!! GCTAACATAGCTTTTAGGGA+AGG + tig0021921:39624-39643 Msa1395200:CDS 40.0%
GAAGATTCGATTGCTGACAT+TGG + tig0021921:39771-39790 Msa1395200:intron 40.0%
! GCTTGCTGATATCATTGAAG+AGG + tig0021921:39858-39877 Msa1395200:CDS 40.0%
GAAGATAGTATCCAACAGGA+TGG + tig0021921:40037-40056 Msa1395200:CDS 40.0%
AGCAAGTCATTGTCATCAGT+TGG - tig0021921:40587-40606 None:intergenic 40.0%
AGAACCAATGTTCTCCTTCT+TGG + tig0021921:40614-40633 Msa1395200:CDS 40.0%
ATCACCAAGAAGGAGAACAT+TGG - tig0021921:40621-40640 None:intergenic 40.0%
TAAGTGAGTTCTCAACGTTG+TGG - tig0021921:40846-40865 None:intergenic 40.0%
GCTGGATGATAACACATCTT+TGG + tig0021921:40913-40932 Msa1395200:intron 40.0%
ATGTTAAGTACCAGGTGAAG+GGG + tig0021921:41045-41064 Msa1395200:intron 40.0%
! CAGTTTGATAACTTCCCACA+TGG - tig0021921:41123-41142 None:intergenic 40.0%
CATGTGGGAAGTTATCAAAC+TGG + tig0021921:41121-41140 Msa1395200:CDS 40.0%
TCTCTCATATGTGCTCAAGT+GGG + tig0021921:41144-41163 Msa1395200:CDS 40.0%
! GGGAAAAAAGTGCAGTAAAG+GGG - tig0021921:41286-41305 None:intergenic 40.0%
! GGGGAAAAAAGTGCAGTAAA+GGG - tig0021921:41287-41306 None:intergenic 40.0%
! AGGGGAAAAAAGTGCAGTAA+AGG - tig0021921:41288-41307 None:intergenic 40.0%
! CATTTTCTGTTGCGATTGTG+AGG + tig0021921:41417-41436 Msa1395200:three_prime_UTR 40.0%
GTGACCTGTAATTCATGCAG+AGG + tig0021921:38283-38302 Msa1395200:five_prime_UTR 45.0%
TCAGCCTCTGCATGAATTAC+AGG - tig0021921:38290-38309 None:intergenic 45.0%
GGCGATAACTCATTTGAGTG+TGG - tig0021921:38419-38438 None:intergenic 45.0%
AAAGTGACGTGGGAGAAAGT+TGG - tig0021921:38466-38485 None:intergenic 45.0%
AGAGGGGGTGAAGAAGAAAA+AGG - tig0021921:38518-38537 None:intergenic 45.0%
ATTGGGTTCAGAATTGACGC+TGG + tig0021921:38649-38668 Msa1395200:CDS 45.0%
GAGTGTGACTCGATTGATCT+TGG - tig0021921:38927-38946 None:intergenic 45.0%
!! ACGTGTAAGGGAGCATTAGA+GGG - tig0021921:39134-39153 None:intergenic 45.0%
! GAGTCATTTCTAGGCAGTCA+TGG + tig0021921:39187-39206 Msa1395200:intron 45.0%
CTGGATTATCCTGCTGCAAA+AGG - tig0021921:39213-39232 None:intergenic 45.0%
!! GTGATTCGGTTTCTCAATGC+TGG + tig0021921:39337-39356 Msa1395200:intron 45.0%
! TCACACATTTTGTGCACCAG+AGG + tig0021921:39465-39484 Msa1395200:intron 45.0%
!! TTTTTCAGACTCACTCGCCA+GGG - tig0021921:40279-40298 None:intergenic 45.0%
!!! TTTTTTCAGACTCACTCGCC+AGG - tig0021921:40280-40299 None:intergenic 45.0%
!! GAACGGTTCGGTGATATTGA+TGG + tig0021921:40560-40579 Msa1395200:CDS 45.0%
GTCTCTCATATGTGCTCAAG+TGG + tig0021921:41143-41162 Msa1395200:CDS 45.0%
!!! CTTTTTTCCCCTCCTGGATA+TGG + tig0021921:41296-41315 Msa1395200:three_prime_UTR 45.0%
!! TGACGATGGATTGGAGTTGG+AGG - tig0021921:38440-38459 None:intergenic 50.0%
!! TGGTGACGATGGATTGGAGT+TGG - tig0021921:38443-38462 None:intergenic 50.0%
!! AGTTGGTGGTGACGATGGAT+TGG - tig0021921:38449-38468 None:intergenic 50.0%
!! GAGAAAGTTGGTGGTGACGA+TGG - tig0021921:38454-38473 None:intergenic 50.0%
! TGTAGCGGGAAAAGTGACGT+GGG - tig0021921:38476-38495 None:intergenic 50.0%
! CAATAAGGGGGGTGTAGGAA+AGG - tig0021921:38552-38571 None:intergenic 50.0%
! ACATGCAATAAGGGGGGTGT+AGG - tig0021921:38557-38576 None:intergenic 50.0%
TTCAGAATTGACGCTGGTGG+TGG + tig0021921:38655-38674 Msa1395200:CDS 50.0%
TCAGAATTGACGCTGGTGGT+GGG + tig0021921:38656-38675 Msa1395200:CDS 50.0%
!! CTGAAGCTTTTGAGGACCAG+CGG - tig0021921:38723-38742 None:intergenic 50.0%
! TTGAGATACTAGTGGGCGTG+AGG + tig0021921:38812-38831 Msa1395200:intron 50.0%
!! CGTGTAAGGGAGCATTAGAG+GGG - tig0021921:39133-39152 None:intergenic 50.0%
!! GACGTGTAAGGGAGCATTAG+AGG - tig0021921:39135-39154 None:intergenic 50.0%
! ATTTTCTCCTACCCTTGGGC+TGG + tig0021921:39282-39301 Msa1395200:CDS 50.0%
! CCTTTTCTCTTCCAGCCCAA+GGG - tig0021921:39296-39315 None:intergenic 50.0%
! TCCTTTTCTCTTCCAGCCCA+AGG - tig0021921:39297-39316 None:intergenic 50.0%
! CTCCTTCTTGGTGATCACAC+TGG + tig0021921:40626-40645 Msa1395200:CDS 50.0%
CTCCAGTGTGATCACCAAGA+AGG - tig0021921:40631-40650 None:intergenic 50.0%
TGGTGATCACACTGGAGACT+TGG + tig0021921:40634-40653 Msa1395200:CDS 50.0%
GGTGATCACACTGGAGACTT+GGG + tig0021921:40635-40654 Msa1395200:CDS 50.0%
GGAGACTTGGGAATGTCTGA+TGG + tig0021921:40647-40666 Msa1395200:CDS 50.0%
TTAAGTACCAGGTGAAGGGG+TGG + tig0021921:41048-41067 Msa1395200:intron 50.0%
CGCATCATTCTGCAGGGAAA+AGG - tig0021921:41099-41118 None:intergenic 50.0%
!!! ACTGCACTTTTTTCCCCTCC+TGG + tig0021921:41290-41309 Msa1395200:three_prime_UTR 50.0%
TGCGACAGTGACATAGACAC+CGG + tig0021921:41511-41530 Msa1395200:three_prime_UTR 50.0%
GTGACGTGGGAGAAAGTTGG+TGG - tig0021921:38463-38482 None:intergenic 55.0%
! GTGTAGCGGGAAAAGTGACG+TGG - tig0021921:38477-38496 None:intergenic 55.0%
GGGTTCAGAATTGACGCTGG+TGG + tig0021921:38652-38671 Msa1395200:CDS 55.0%
CTTGCTGCAATTCGTTCCGC+TGG + tig0021921:38704-38723 Msa1395200:CDS 55.0%
CGCTGGTCCTCAAAAGCTTC+AGG + tig0021921:38721-38740 Msa1395200:CDS 55.0%
! AGATACTAGTGGGCGTGAGG+TGG + tig0021921:38815-38834 Msa1395200:intron 55.0%
GTCACACTCCAAACGTGCAG+TGG + tig0021921:38938-38957 Msa1395200:intron 55.0%
ACACTCCAAACGTGCAGTGG+TGG + tig0021921:38941-38960 Msa1395200:intron 55.0%
CACTCCAAACGTGCAGTGGT+GGG + tig0021921:38942-38961 Msa1395200:intron 55.0%
! CAGTCATGGCCTTTTGCAGC+AGG + tig0021921:39201-39220 Msa1395200:CDS 55.0%
TTCTCTTCCAGCCCAAGGGT+AGG - tig0021921:39292-39311 None:intergenic 55.0%
! CCCTTGGGCTGGAAGAGAAA+AGG + tig0021921:39293-39312 Msa1395200:CDS 55.0%
TGGCTGAGCCTGTTCACGAA+CGG + tig0021921:40543-40562 Msa1395200:CDS 55.0%
GAGCCTGTTCACGAACGGTT+CGG + tig0021921:40548-40567 Msa1395200:CDS 55.0%
TCACCGAACCGTTCGTGAAC+AGG - tig0021921:40554-40573 None:intergenic 55.0%
CATGGGCGCATCATTCTGCA+GGG - tig0021921:41105-41124 None:intergenic 55.0%
ACATGGGCGCATCATTCTGC+AGG - tig0021921:41106-41125 None:intergenic 55.0%
TGCAGAATGATGCGCCCATG+TGG + tig0021921:41105-41124 Msa1395200:intron 55.0%
GCAGAATGATGCGCCCATGT+GGG + tig0021921:41106-41125 Msa1395200:intron 55.0%
TTTCCCCTCCTGGATATGGC+TGG + tig0021921:41300-41319 Msa1395200:three_prime_UTR 55.0%
ATCGCCAGCCATATCCAGGA+GGG - tig0021921:41307-41326 None:intergenic 55.0%
AATCGCCAGCCATATCCAGG+AGG - tig0021921:41308-41327 None:intergenic 55.0%
GCTAATCGCCAGCCATATCC+AGG - tig0021921:41311-41330 None:intergenic 55.0%
ACTGCCCACCACTGCACGTT+TGG - tig0021921:38949-38968 None:intergenic 60.0%
TCGCCAGCCATATCCAGGAG+GGG - tig0021921:41306-41325 None:intergenic 60.0%
TACTCGGCCACCCCTTCACC+TGG - tig0021921:41058-41077 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
tig0021921 gene 38224 41584 38224 ID=Msa1395200;Name=Msa1395200
tig0021921 mRNA 38224 41584 38224 ID=Msa1395200-mRNA-1;Parent=Msa1395200;Name=Msa1395200-mRNA-1;_AED=0.08;_eAED=0.08;_QI=202|1|1|1|1|1|10|412|344
tig0021921 exon 38224 38511 38224 ID=Msa1395200-mRNA-1:exon:14750;Parent=Msa1395200-mRNA-1
tig0021921 exon 38595 38742 38595 ID=Msa1395200-mRNA-1:exon:14751;Parent=Msa1395200-mRNA-1
tig0021921 exon 39045 39105 39045 ID=Msa1395200-mRNA-1:exon:14752;Parent=Msa1395200-mRNA-1
tig0021921 exon 39200 39332 39200 ID=Msa1395200-mRNA-1:exon:14753;Parent=Msa1395200-mRNA-1
tig0021921 exon 39551 39674 39551 ID=Msa1395200-mRNA-1:exon:14754;Parent=Msa1395200-mRNA-1
tig0021921 exon 39823 39879 39823 ID=Msa1395200-mRNA-1:exon:14755;Parent=Msa1395200-mRNA-1
tig0021921 exon 39999 40092 39999 ID=Msa1395200-mRNA-1:exon:14756;Parent=Msa1395200-mRNA-1
tig0021921 exon 40498 40705 40498 ID=Msa1395200-mRNA-1:exon:14757;Parent=Msa1395200-mRNA-1
tig0021921 exon 40840 40900 40840 ID=Msa1395200-mRNA-1:exon:14758;Parent=Msa1395200-mRNA-1
tig0021921 exon 41110 41584 41110 ID=Msa1395200-mRNA-1:exon:14759;Parent=Msa1395200-mRNA-1
tig0021921 five_prime_UTR 38224 38425 38224 ID=Msa1395200-mRNA-1:five_prime_utr;Parent=Msa1395200-mRNA-1
tig0021921 CDS 38426 38511 38426 ID=Msa1395200-mRNA-1:cds;Parent=Msa1395200-mRNA-1
tig0021921 CDS 38595 38742 38595 ID=Msa1395200-mRNA-1:cds;Parent=Msa1395200-mRNA-1
tig0021921 CDS 39045 39105 39045 ID=Msa1395200-mRNA-1:cds;Parent=Msa1395200-mRNA-1
tig0021921 CDS 39200 39332 39200 ID=Msa1395200-mRNA-1:cds;Parent=Msa1395200-mRNA-1
tig0021921 CDS 39551 39674 39551 ID=Msa1395200-mRNA-1:cds;Parent=Msa1395200-mRNA-1
tig0021921 CDS 39823 39879 39823 ID=Msa1395200-mRNA-1:cds;Parent=Msa1395200-mRNA-1
tig0021921 CDS 39999 40092 39999 ID=Msa1395200-mRNA-1:cds;Parent=Msa1395200-mRNA-1
tig0021921 CDS 40498 40705 40498 ID=Msa1395200-mRNA-1:cds;Parent=Msa1395200-mRNA-1
tig0021921 CDS 40840 40900 40840 ID=Msa1395200-mRNA-1:cds;Parent=Msa1395200-mRNA-1
tig0021921 CDS 41110 41172 41110 ID=Msa1395200-mRNA-1:cds;Parent=Msa1395200-mRNA-1
tig0021921 three_prime_UTR 41173 41584 41173 ID=Msa1395200-mRNA-1:three_prime_utr;Parent=Msa1395200-mRNA-1
Gene Sequence

>Msa1395200

ATGAGTTATCGCCTCCAACTCCAATCCATCGTCACCACCAACTTTCTCCCACGTCACTTTTCCCGCTACACTTCTTCAACATCAAGGGTTTCGTTTTCTACATTTTGTTGTGGAAAACATTTGGAAATGGAGGATATCAAATTGGGTTCAGAATTGACGCTGGTGGTGGGTGATCCTGTTTTGCTCCACAACAAACTTGCTGCAATTCGTTCCGCTGGTCCTCAAAAGCTTCAGGTGATCGCTGATTTTGATGCCACATTAACAAAGTTTTGGGTTAATGGAACTCGCGGCCAAAGCAGTCATGGCCTTTTGCAGCAGGATAATCCAGAATATGATGCCAAAAGGCAGCAGTTATATGAACATTACCATCCATTGGAATTTTCTCCTACCCTTGGGCTGGAAGAGAAAAGGAAACTCATGGTAGAGTGGTGGGGAAAAACGCATGCTCTTCTTATTGAAGGAGGACTTACATATGAATCAATAAAACAATCAGTTGCTAATGCTAACATAGCTTTTAGGGAAGGTGTTTCTGAGCTTTTTGAATTTTTGGAGGAAAGAGACATTCCTGTATTAATATTCTCTGCAGGGCTTGCTGATATCATTGAAGAGGTTCTAAGGCAGAAGCTTCGCAGATCCTTCAAAAATGTGAAGATAGTATCCAACAGGATGGTATTTAACAATGGCCAACTTGTATCTTTTAAAGGAAAATTGATTCACAGCTTAAATAAAAATGAGCATGCTCTTGATATGGCTGAGCCTGTTCACGAACGGTTCGGTGATATTGATGGTCCAACTGATGACAATGACTTGCTCAAGAAGAGAACCAATGTTCTCCTTCTTGGTGATCACACTGGAGACTTGGGAATGTCTGATGGTTTAAATTACGATACTCGAATTTCTGTGGGATTTTTGAACCACAACGTTGAGAACTCACTTAGCTGCTATCGAGAAGCTTTTGATGTTGTTTTAATGAATGATGCGCCCATGTGGGAAGTTATCAAACTGGTCTCTCATATGTGCTCAAGTGGGAAGTGA

Protein sequence

>Msa1395200

MSYRLQLQSIVTTNFLPRHFSRYTSSTSRVSFSTFCCGKHLEMEDIKLGSELTLVVGDPVLLHNKLAAIRSAGPQKLQVIADFDATLTKFWVNGTRGQSSHGLLQQDNPEYDAKRQQLYEHYHPLEFSPTLGLEEKRKLMVEWWGKTHALLIEGGLTYESIKQSVANANIAFREGVSELFEFLEERDIPVLIFSAGLADIIEEVLRQKLRRSFKNVKIVSNRMVFNNGQLVSFKGKLIHSLNKNEHALDMAEPVHERFGDIDGPTDDNDLLKKRTNVLLLGDHTGDLGMSDGLNYDTRISVGFLNHNVENSLSCYREAFDVVLMNDAPMWEVIKLVSHMCSSGK*