AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1073100

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1073100 MtrunA17_Chr7g0256041 84.488 361 37 5 1 343 1 360 0.0 604
Msa1073100 MtrunA17_Chr7g0235331 61.682 107 41 0 233 339 19 125 4.85e-47 155
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1073100 AT4G18593.1 60.748 107 37 2 233 339 27 128 1.41e-44 150
Msa1073100 AT4G18593.2 60.748 107 37 2 233 339 27 128 1.41e-44 150

Find 143 sgRNAs with CRISPR-Local

Find 349 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCTTCTTTCTTCTTCTCTT+TGG 0.110021 7_2:-70460295 None:intergenic
CATATTTAGCTTATAGTTAA+TGG 0.127766 7_2:+70464861 Msa1073100:three_prime_UTR
TCTTCTTTCTTCTTCTCTTT+GGG 0.167881 7_2:-70460294 None:intergenic
GATTCATTAGACTTGTTAAA+AGG 0.260913 7_2:-70463900 None:intergenic
GATTATTATACAACTCTATT+AGG 0.268265 7_2:-70465012 None:intergenic
GGGGACGGTGGTGGTGGTGG+TGG 0.322589 7_2:-70460417 None:intergenic
CCCGTTTGGGATACTTCAAT+TGG 0.323463 7_2:+70464322 Msa1073100:CDS
ATTCTAGTTACTTGTGTGTA+AGG 0.339464 7_2:+70464963 Msa1073100:three_prime_UTR
CCGTAGAGGCTCAATAAATA+TGG 0.345431 7_2:-70463934 None:intergenic
TGCTCATTGTGATGCCCGTT+TGG 0.347710 7_2:+70464308 Msa1073100:CDS
CTGCTCTAGAAAGCCATCAT+TGG 0.357821 7_2:-70461813 None:intergenic
TGCTCTAGAAAGCCATCATT+GGG 0.368300 7_2:-70461812 None:intergenic
ATATTATCCTATCTATTATA+TGG 0.370188 7_2:+70465055 Msa1073100:three_prime_UTR
GTTGAAAATGTTTGAGGAGA+TGG 0.370927 7_2:+70461928 Msa1073100:intron
GTTTCGCTGGTGTTTCTAGA+AGG 0.372534 7_2:+70460752 Msa1073100:CDS
GGGGAGGGTGAGACATCCTT+TGG 0.382903 7_2:+70463852 Msa1073100:CDS
AGAACCTGAATGTTCTTGTT+AGG 0.383393 7_2:+70464774 Msa1073100:three_prime_UTR
AACGAGTACAGAAGCTTATC+CGG 0.385106 7_2:-70460587 None:intergenic
GAGGATGTGGGTGATGTTGT+GGG 0.385369 7_2:-70460438 None:intergenic
CCTATAGTTGAAAATGTTTG+AGG 0.385792 7_2:+70461922 Msa1073100:intron
CTCAACTGCAAATGAAGTTA+TGG 0.385930 7_2:+70464531 Msa1073100:three_prime_UTR
AGAGGATGTGGGTGATGTTG+TGG 0.387277 7_2:-70460439 None:intergenic
TCAGGTGAGAATCATTTCTC+AGG 0.388064 7_2:+70463660 Msa1073100:intron
TTCTTCTTCTCTTTGGGGTG+AGG 0.390954 7_2:-70460288 None:intergenic
AGACGAAAGCGCTTGTATAC+AGG 0.393097 7_2:-70461974 None:intergenic
ACTTGTGTGTAAGGTTTGTT+TGG 0.399375 7_2:+70464972 Msa1073100:three_prime_UTR
GGTGGTGGTTTGGAGAATTT+CGG 0.414742 7_2:-70460399 None:intergenic
TAGGAAAGAAGGTTCTGTTT+TGG 0.414854 7_2:+70460723 Msa1073100:CDS
CATATACTCATGTCTCGATA+AGG 0.420537 7_2:+70464450 Msa1073100:three_prime_UTR
ATCCGGGGAGAGAGCGGACT+TGG 0.421265 7_2:-70460570 None:intergenic
GTTTGAGGAGATGGGTTTCA+AGG 0.423864 7_2:+70461937 Msa1073100:CDS
TCTAAGCTTGGTGCAGATCC+TGG 0.425042 7_2:+70463699 Msa1073100:CDS
TTGAAAATGTTTGAGGAGAT+GGG 0.427324 7_2:+70461929 Msa1073100:CDS
TACTGAGAGTGAGAATTTGT+TGG 0.428765 7_2:+70460663 Msa1073100:CDS
ATGAGGTAAGGCATCGGAAT+CGG 0.428905 7_2:-70460338 None:intergenic
ATGACCTAACAAGAACATTC+AGG 0.429426 7_2:-70464778 None:intergenic
AGCTGAGAACGGAGAGGATG+TGG 0.435012 7_2:-70460451 None:intergenic
CATGTCGTAGATCATATTCC+TGG 0.438405 7_2:+70463831 Msa1073100:CDS
AGGCTAAACAAATGCAGTTA+TGG 0.439147 7_2:+70464591 Msa1073100:three_prime_UTR
ATTGAGAGGAGTAGGAAAGA+AGG 0.439467 7_2:+70460712 Msa1073100:CDS
CTTCTTTCTTCTTCTCTTTG+GGG 0.442965 7_2:-70460293 None:intergenic
TACAATGCAGCTGTGGAAGC+TGG 0.443294 7_2:+70464352 Msa1073100:CDS
GTAAGGTTTGTTTGGTGGCT+AGG 0.447993 7_2:+70464980 Msa1073100:three_prime_UTR
GCTCATTGTGATGCCCGTTT+GGG 0.448209 7_2:+70464309 Msa1073100:CDS
CAGTCTGCCATATAATAGAT+AGG 0.455534 7_2:-70465062 None:intergenic
ACCTCTGAAGAAGTTTCAAC+AGG 0.461123 7_2:-70463726 None:intergenic
TCAAAATCAACGTATATTCA+AGG 0.464588 7_2:-70464733 None:intergenic
CCCAATTGAAGTATCCCAAA+CGG 0.465316 7_2:-70464323 None:intergenic
GAAGTTTCAACAGGCATGCC+AGG 0.467127 7_2:-70463717 None:intergenic
CATACCTGCTCAAGATTTCG+AGG 0.473613 7_2:+70464571 Msa1073100:three_prime_UTR
TTCCTTCTCCGTCCCTGTCA+AGG 0.474413 7_2:+70460508 Msa1073100:CDS
ATATACTCATGTCTCGATAA+GGG 0.476211 7_2:+70464451 Msa1073100:three_prime_UTR
CCATATTTATTGAGCCTCTA+CGG 0.478853 7_2:+70463934 Msa1073100:CDS
GTCCAAGAACAATGGAGAAA+AGG 0.479438 7_2:-70464480 None:intergenic
AGGATGTGGGTGATGTTGTG+GGG 0.481858 7_2:-70460437 None:intergenic
CGCCAAGTCCGCTCTCTCCC+CGG 0.481905 7_2:+70460568 Msa1073100:CDS
TTGGGATACTTCAATTGGGC+AGG 0.489311 7_2:+70464327 Msa1073100:CDS
CGGAATCGGAATGGAGGATC+GGG 0.494273 7_2:-70460324 None:intergenic
CCATCTCCTTCTTCTCCGAA+TGG 0.497479 7_2:+70460480 Msa1073100:CDS
AGAACGCCATTCGGAGAAGA+AGG 0.497667 7_2:-70460486 None:intergenic
GGAGAAGGAAGAACGCCATT+CGG 0.499383 7_2:-70460495 None:intergenic
AGCTCTGCTTTAACGATGCA+AGG 0.503140 7_2:-70461775 None:intergenic
AGGGTGAGACATCCTTTGGC+TGG 0.503541 7_2:+70463856 Msa1073100:CDS
ACGAGTACAGAAGCTTATCC+GGG 0.504528 7_2:-70460586 None:intergenic
GGAGATCTCCTTGACAGGGA+CGG 0.507079 7_2:-70460516 None:intergenic
TGTACTCGTTGGAATACGCC+GGG 0.513421 7_2:+70460600 Msa1073100:CDS
GGCTGGCACAAGCGGAAAAG+TGG 0.513620 7_2:+70463873 Msa1073100:CDS
CAATGATGGCTTTCTAGAGC+AGG 0.514418 7_2:+70461814 Msa1073100:CDS
TGTGTGTAAGGTTTGTTTGG+TGG 0.515460 7_2:+70464975 Msa1073100:three_prime_UTR
GAGCGGACTTGGCGGCCGTA+GGG 0.515523 7_2:-70460559 None:intergenic
GAGGTCGGAGACATGAACTT+TGG 0.517899 7_2:-70460537 None:intergenic
CCAATTGAAGTATCCCAAAC+GGG 0.519074 7_2:-70464322 None:intergenic
GAATTTGTTTGCCCCAATGA+TGG 0.519376 7_2:+70461800 Msa1073100:CDS
TGTTGAAACTTCTTCAGAGG+TGG 0.520731 7_2:+70463728 Msa1073100:CDS
CTCCTTGACAGGGACGGAGA+AGG 0.523200 7_2:-70460510 None:intergenic
CCGTTTGGGATACTTCAATT+GGG 0.524019 7_2:+70464323 Msa1073100:CDS
TAAAATCAACACAAACTTCG+AGG 0.525001 7_2:-70460690 None:intergenic
GTTGTATAATAATCAGATAG+AGG 0.525159 7_2:+70465021 Msa1073100:three_prime_UTR
ACTTTGGAGATCTCCTTGAC+AGG 0.526020 7_2:-70460521 None:intergenic
TTTCCGCTTGTGCCAGCCAA+AGG 0.528514 7_2:-70463868 None:intergenic
AGTTGAGGAAGGCGCGTTGG+AGG 0.531978 7_2:+70464272 Msa1073100:intron
CATCCTTTGGCTGGCACAAG+CGG 0.533168 7_2:+70463865 Msa1073100:CDS
TCGGAATCGGAATGGAGGAT+CGG 0.536124 7_2:-70460325 None:intergenic
CTCAGTTGAGGAAGGCGCGT+TGG 0.536953 7_2:+70464269 Msa1073100:intron
CGGGGAGAGAGCGGACTTGG+CGG 0.539141 7_2:-70460567 None:intergenic
CTATCTATTATATGGCAGAC+TGG 0.542968 7_2:+70465063 Msa1073100:three_prime_UTR
CAGGTGAGAATCATTTCTCA+GGG 0.543545 7_2:+70463661 Msa1073100:intron
AAGGATGTCTCACCCTCCCC+AGG 0.546506 7_2:-70463849 None:intergenic
AGGATAGACAGTTCTAAGCT+TGG 0.546865 7_2:+70463687 Msa1073100:CDS
ATGTCGTAGATCATATTCCT+GGG 0.548003 7_2:+70463832 Msa1073100:CDS
TAGTCAAGTGTGCTTTGTCA+TGG 0.548729 7_2:+70465089 Msa1073100:three_prime_UTR
TCATTTGCAGTTGAGCAGCT+AGG 0.551230 7_2:-70464523 None:intergenic
GTGGTGCAACAAGACTTACA+TGG 0.552624 7_2:-70464421 None:intergenic
GACGAAAGCGCTTGTATACA+GGG 0.552682 7_2:-70461973 None:intergenic
CAAATGCAGTTATGGTTGAG+AGG 0.555563 7_2:+70464599 Msa1073100:three_prime_UTR
TTAGCCTCGAAATCTTGAGC+AGG 0.555819 7_2:-70464575 None:intergenic
CACTTCTTGCAGCGATATGT+AGG 0.556043 7_2:-70463783 None:intergenic
CCTCTACGGTGGATGAAAGA+TGG 0.560281 7_2:+70463948 Msa1073100:CDS
GGATGTGGGTGATGTTGTGG+GGG 0.561150 7_2:-70460436 None:intergenic
GCCTGTTGAAACTTCTTCAG+AGG 0.563895 7_2:+70463725 Msa1073100:CDS
GTTGAAACTTCTTCAGAGGT+GGG 0.564173 7_2:+70463729 Msa1073100:CDS
GGATATCAAGTTGTCTCTGT+AGG 0.565292 7_2:+70464819 Msa1073100:three_prime_UTR
CTTTGGAGATCTCCTTGACA+GGG 0.570568 7_2:-70460520 None:intergenic
AACAAGCTTAAAATCTTCCC+CGG 0.571507 7_2:-70460618 None:intergenic
GGATAAGCTTCTGTACTCGT+TGG 0.571948 7_2:+70460589 Msa1073100:CDS
TTAACTATAAGCTAAATATG+TGG 0.572608 7_2:-70464858 None:intergenic
GTTGAGGAAGGCGCGTTGGA+GGG 0.574211 7_2:+70464273 Msa1073100:intron
TCTTGTCACTCAGTTGAGGA+AGG 0.575185 7_2:+70464261 Msa1073100:intron
GATGGAAGCGGAGCTGAGAA+CGG 0.575842 7_2:-70460462 None:intergenic
CGATGATGTTGCTGATGAAG+AGG 0.576599 7_2:-70460370 None:intergenic
GGAGAAGAAGGAGATGGAAG+CGG 0.581126 7_2:-70460474 None:intergenic
GTAAGGCATCGGAATCGGAA+TGG 0.581511 7_2:-70460333 None:intergenic
GATAAGTGTCGATTTCAACT+TGG 0.581969 7_2:-70464674 None:intergenic
ACATGAGTATATGTATAAAG+TGG 0.584720 7_2:-70464440 None:intergenic
AAGCTTATCCGGGGAGAGAG+CGG 0.588410 7_2:-70460576 None:intergenic
AGAATCATTTCTCAGGGTCG+AGG 0.589151 7_2:+70463667 Msa1073100:CDS
CCATTCGGAGAAGAAGGAGA+TGG 0.592616 7_2:-70460480 None:intergenic
TGGTGCAACAAGACTTACAT+GGG 0.594553 7_2:-70464420 None:intergenic
CGGACTTGGCGGCCGTAGGG+AGG 0.598044 7_2:-70460556 None:intergenic
CATTATTAGTCGTTAAATCG+TGG 0.600511 7_2:+70464798 Msa1073100:three_prime_UTR
CGTAGATCATATTCCTGGGG+AGG 0.603657 7_2:+70463836 Msa1073100:CDS
CAAGAACAATGGAGAAAAGG+TGG 0.604929 7_2:-70464477 None:intergenic
AGAGCGGACTTGGCGGCCGT+AGG 0.605058 7_2:-70460560 None:intergenic
GCTGAGAACGGAGAGGATGT+GGG 0.607618 7_2:-70460450 None:intergenic
TCATGTCTCCGACCTCCCTA+CGG 0.610980 7_2:+70460544 Msa1073100:CDS
ACGGGCATCACAATGAGCAC+AGG 0.619374 7_2:-70464304 None:intergenic
CCATCTTTCATCCACCGTAG+AGG 0.619573 7_2:-70463948 None:intergenic
GAATGCAAGTCCAAGAACAA+TGG 0.620741 7_2:-70464488 None:intergenic
GTAGATCATATTCCTGGGGA+GGG 0.623117 7_2:+70463837 Msa1073100:CDS
TCACGGATGAGGTAAGGCAT+CGG 0.630162 7_2:-70460344 None:intergenic
TTAGGATGGCTGTGCCGCTG+AGG 0.637489 7_2:+70460639 Msa1073100:CDS
AGGCATCGGAATCGGAATGG+AGG 0.640112 7_2:-70460330 None:intergenic
GCTCTGCTTTAACGATGCAA+GGG 0.645098 7_2:-70461774 None:intergenic
GCAGGCATACAATGCAGCTG+TGG 0.649537 7_2:+70464345 Msa1073100:CDS
TATTTATTGAGCCTCTACGG+TGG 0.683041 7_2:+70463937 Msa1073100:CDS
CTTGCAATGCAACAATACGA+CGG 0.704891 7_2:-70463806 None:intergenic
CGAGTACAGAAGCTTATCCG+GGG 0.705162 7_2:-70460585 None:intergenic
TGTCGTAGATCATATTCCTG+GGG 0.712970 7_2:+70463833 Msa1073100:CDS
GCTCTAGAAAGCCATCATTG+GGG 0.722213 7_2:-70461811 None:intergenic
AAGCGGAGCTGAGAACGGAG+AGG 0.730719 7_2:-70460457 None:intergenic
CTCACTCTCAGTATCCTCAG+CGG 0.735865 7_2:-70460653 None:intergenic
GTACTCGTTGGAATACGCCG+GGG 0.747350 7_2:+70460601 Msa1073100:CDS
GGTGCAACAAGACTTACATG+GGG 0.765081 7_2:-70464419 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTCAAAATATTATAAAAGA+CGG - chr7_2:70464093-70464112 None:intergenic 10.0%
!! TTATAAACAAAAAAGTTCTT+CGG - chr7_2:70461661-70461680 None:intergenic 15.0%
!!! TTGTTTTTTTCTTCTTTTTT+CGG + chr7_2:70461728-70461747 Msa1073100:intron 15.0%
!! AAGTTAACATAAAAAAACAT+AGG - chr7_2:70462185-70462204 None:intergenic 15.0%
!!! ACTTTCAAAAAACTTTTAAA+AGG - chr7_2:70462277-70462296 None:intergenic 15.0%
!!! TTTAAAAGTTTTTTGAAAGT+AGG + chr7_2:70462277-70462296 Msa1073100:intron 15.0%
!! AAAGAAAAAAAACTTATGAA+AGG - chr7_2:70462755-70462774 None:intergenic 15.0%
!!! GTACAATTAATCATTTTTTA+AGG - chr7_2:70463039-70463058 None:intergenic 15.0%
!!! ACTTTTATTCATAAATACAA+AGG - chr7_2:70463471-70463490 None:intergenic 15.0%
!! ATATTATCCTATCTATTATA+TGG + chr7_2:70465055-70465074 Msa1073100:three_prime_UTR 15.0%
!! AAATAAGTTGTTTATCTGAA+AGG + chr7_2:70461363-70461382 Msa1073100:intron 20.0%
!! AGTGAAAAAAATAAGAAGAA+AGG - chr7_2:70461554-70461573 None:intergenic 20.0%
!! ACAAATGACATAAAAGTAAA+AGG - chr7_2:70462126-70462145 None:intergenic 20.0%
!!! CAAAAAACTTTTAAAAGGAA+TGG - chr7_2:70462272-70462291 None:intergenic 20.0%
!!! TTTTAGTGTTAGTGAAAAAT+AGG + chr7_2:70462550-70462569 Msa1073100:intron 20.0%
!!! GTTTTTTTTCTTTCTTTCAT+TGG + chr7_2:70462762-70462781 Msa1073100:intron 20.0%
!!! CATTTTTTAAGGTTTTCTTT+GGG - chr7_2:70463028-70463047 None:intergenic 20.0%
!!! TCATTTTTTAAGGTTTTCTT+TGG - chr7_2:70463029-70463048 None:intergenic 20.0%
!!! CTATTAATACATTTTAGTCA+AGG - chr7_2:70463086-70463105 None:intergenic 20.0%
!!! CGTTTTAAAATTAACTACAT+TGG - chr7_2:70463112-70463131 None:intergenic 20.0%
!! TGATAATTATTTGAATCCTT+TGG + chr7_2:70463411-70463430 Msa1073100:intron 20.0%
!!! ATTTTGATTCAAAAGCAATT+GGG + chr7_2:70464749-70464768 Msa1073100:three_prime_UTR 20.0%
!! TTAACTATAAGCTAAATATG+TGG - chr7_2:70464861-70464880 None:intergenic 20.0%
!!! CATATTTAGCTTATAGTTAA+TGG + chr7_2:70464861-70464880 Msa1073100:three_prime_UTR 20.0%
!! GATTATTATACAACTCTATT+AGG - chr7_2:70465015-70465034 None:intergenic 20.0%
!!! TTTGTGTTGATTTTATTGAG+AGG + chr7_2:70460698-70460717 Msa1073100:CDS 25.0%
! TAGGTTTAGTAAAACTGTTT+GGG - chr7_2:70461141-70461160 None:intergenic 25.0%
! ATAGGTTTAGTAAAACTGTT+TGG - chr7_2:70461142-70461161 None:intergenic 25.0%
!!! TAATCAATAAGCTGTTTTCA+AGG - chr7_2:70461252-70461271 None:intergenic 25.0%
! AGAAATAGCTAATTCATAAG+TGG + chr7_2:70461309-70461328 Msa1073100:intron 25.0%
! GAAATAGCTAATTCATAAGT+GGG + chr7_2:70461310-70461329 Msa1073100:intron 25.0%
!! ATTTTGCAGCTTATATCATA+AGG - chr7_2:70461347-70461366 None:intergenic 25.0%
!!! ATTTTCGCTTTTCATCAAAT+AGG - chr7_2:70461448-70461467 None:intergenic 25.0%
!! ATACTTTGTTTAAAGTCTTC+AGG + chr7_2:70461502-70461521 Msa1073100:intron 25.0%
!! TACTTTGTTTAAAGTCTTCA+GGG + chr7_2:70461503-70461522 Msa1073100:intron 25.0%
!! TTAAAGTTATGATAGTGCTT+AGG + chr7_2:70461601-70461620 Msa1073100:intron 25.0%
!! ATACGAGTATCTTTTCAAAA+TGG + chr7_2:70461634-70461653 Msa1073100:intron 25.0%
!! TACGAGTATCTTTTCAAAAT+GGG + chr7_2:70461635-70461654 Msa1073100:intron 25.0%
! AATGTTTATGTTTGACAATG+AGG + chr7_2:70461869-70461888 Msa1073100:intron 25.0%
! TATATGATAATATGAGCATG+AGG - chr7_2:70462050-70462069 None:intergenic 25.0%
! TCATGCTCATATTATCATAT+AGG + chr7_2:70462049-70462068 Msa1073100:intron 25.0%
! AAAAAACATAGGAAGAGAAA+AGG - chr7_2:70462174-70462193 None:intergenic 25.0%
! AAAAAACACATTGTCTGAAA+AGG - chr7_2:70462224-70462243 None:intergenic 25.0%
! CAAAAGATAAATTTGTGCTT+TGG + chr7_2:70462594-70462613 Msa1073100:intron 25.0%
! GAAAAAAAACTTATGAAAGG+TGG - chr7_2:70462752-70462771 None:intergenic 25.0%
!! TTTTCTTAGTTTCCCAATAT+CGG - chr7_2:70462799-70462818 None:intergenic 25.0%
! GAAACTAAGAAAATGCATTA+GGG + chr7_2:70462806-70462825 Msa1073100:intron 25.0%
!!! TTTTTGGGGAGTATTTTTTA+AGG - chr7_2:70462933-70462952 None:intergenic 25.0%
!!! TCAAGGAAGATTATTTTATC+TGG - chr7_2:70463069-70463088 None:intergenic 25.0%
! AAAACGAATTAACGTAGATT+TGG + chr7_2:70463126-70463145 Msa1073100:intron 25.0%
! GTTGAGATACAAATAAATAG+TGG + chr7_2:70463148-70463167 Msa1073100:intron 25.0%
!!! AATGTCCACTTTAGAATATT+CGG - chr7_2:70463234-70463253 None:intergenic 25.0%
!! TAATTTGTAGCAATAGATTC+CGG + chr7_2:70463441-70463460 Msa1073100:intron 25.0%
!!! GATTCATTAGACTTGTTAAA+AGG - chr7_2:70463903-70463922 None:intergenic 25.0%
! AAGTCAAATTCAATTCTTGT+TGG - chr7_2:70464016-70464035 None:intergenic 25.0%
!! GCATATTACCAAAATTTTCT+TGG + chr7_2:70464120-70464139 Msa1073100:intron 25.0%
!! TTAATGCTCCAAGAAAATTT+TGG - chr7_2:70464131-70464150 None:intergenic 25.0%
! CGCATAAATATGCATAAAAA+TGG + chr7_2:70464215-70464234 Msa1073100:intron 25.0%
! ACATGAGTATATGTATAAAG+TGG - chr7_2:70464443-70464462 None:intergenic 25.0%
!! CTTCTTCCAAAATGATTTTT+AGG + chr7_2:70464647-70464666 Msa1073100:three_prime_UTR 25.0%
! TCAAAATCAACGTATATTCA+AGG - chr7_2:70464736-70464755 None:intergenic 25.0%
!!! GATTTTGATTCAAAAGCAAT+TGG + chr7_2:70464748-70464767 Msa1073100:three_prime_UTR 25.0%
!!! TTACTAGTTTTCTTCATGTT+GGG - chr7_2:70464905-70464924 None:intergenic 25.0%
!!! ATTACTAGTTTTCTTCATGT+TGG - chr7_2:70464906-70464925 None:intergenic 25.0%
! GTTGTATAATAATCAGATAG+AGG + chr7_2:70465021-70465040 Msa1073100:three_prime_UTR 25.0%
TCTTCTTTCTTCTTCTCTTT+GGG - chr7_2:70460297-70460316 None:intergenic 30.0%
TTCTTCTTTCTTCTTCTCTT+TGG - chr7_2:70460298-70460317 None:intergenic 30.0%
!!! AGATTTTAAGCTTGTTAGGA+TGG + chr7_2:70460625-70460644 Msa1073100:CDS 30.0%
TAAAATCAACACAAACTTCG+AGG - chr7_2:70460693-70460712 None:intergenic 30.0%
! TTGATTTTATTGAGAGGAGT+AGG + chr7_2:70460704-70460723 Msa1073100:CDS 30.0%
ATAAGCATGCTTATGACATA+TGG + chr7_2:70460893-70460912 Msa1073100:intron 30.0%
ATAAGCTGTATATCCAAACA+AGG - chr7_2:70460919-70460938 None:intergenic 30.0%
AAAAGCCCTTATCACTATAA+GGG + chr7_2:70460951-70460970 Msa1073100:intron 30.0%
ATAAGCCCTTATAGTGATAA+GGG - chr7_2:70460959-70460978 None:intergenic 30.0%
! CTTATGAATATGGACTTGTT+TGG - chr7_2:70461193-70461212 None:intergenic 30.0%
CTGAAAACAGCTTATGAATA+TGG - chr7_2:70461203-70461222 None:intergenic 30.0%
! CCTCAAACATTTTCAACTAT+AGG - chr7_2:70461925-70461944 None:intergenic 30.0%
CCTATAGTTGAAAATGTTTG+AGG + chr7_2:70461922-70461941 Msa1073100:intron 30.0%
TTGAAAATGTTTGAGGAGAT+GGG + chr7_2:70461929-70461948 Msa1073100:CDS 30.0%
TCGTCTAAAAATACTAGGTA+TGG + chr7_2:70461991-70462010 Msa1073100:intron 30.0%
TGCTCATATTATCATATAGG+TGG + chr7_2:70462052-70462071 Msa1073100:intron 30.0%
! AGTGACAACTTGTATTGTTT+TGG + chr7_2:70462080-70462099 Msa1073100:intron 30.0%
GACAACATTAGTACAGATTT+GGG - chr7_2:70462334-70462353 None:intergenic 30.0%
TGACAACATTAGTACAGATT+TGG - chr7_2:70462335-70462354 None:intergenic 30.0%
GTACTAATGTTGTCAAATAG+TGG + chr7_2:70462340-70462359 Msa1073100:intron 30.0%
!! TGTTTAAGAGCTAGCTTTAA+CGG + chr7_2:70462425-70462444 Msa1073100:intron 30.0%
TAGTGTTAGTGAAAAATAGG+TGG + chr7_2:70462553-70462572 Msa1073100:intron 30.0%
AGTGTTAGTGAAAAATAGGT+GGG + chr7_2:70462554-70462573 Msa1073100:intron 30.0%
!!! AGTTTTGAGGATTGAAGAAT+GGG + chr7_2:70462696-70462715 Msa1073100:intron 30.0%
GGAAACTAAGAAAATGCATT+AGG + chr7_2:70462805-70462824 Msa1073100:intron 30.0%
!! TGGGAGTATCAAATTAAATC+AGG + chr7_2:70463267-70463286 Msa1073100:intron 30.0%
TACAAATTAGACACTACCAA+AGG - chr7_2:70463430-70463449 None:intergenic 30.0%
ATGAATAAAAGTCCTTACCA+TGG + chr7_2:70463479-70463498 Msa1073100:intron 30.0%
AGTTTGATATACAACAACCA+TGG - chr7_2:70463499-70463518 None:intergenic 30.0%
ATAGTACACAATCATCACAT+TGG - chr7_2:70463575-70463594 None:intergenic 30.0%
AATGTGATGATTGTGTACTA+TGG + chr7_2:70463574-70463593 Msa1073100:intron 30.0%
ATGTGATGATTGTGTACTAT+GGG + chr7_2:70463575-70463594 Msa1073100:intron 30.0%
CTAGTAATTTATGTCATCTG+AGG + chr7_2:70463616-70463635 Msa1073100:intron 30.0%
!!! GAAATATCTCTCCTTTTTTC+AGG + chr7_2:70463642-70463661 Msa1073100:intron 30.0%
AATGATTCTCACCTGAAAAA+AGG - chr7_2:70463656-70463675 None:intergenic 30.0%
!! ACTAAATAATGAGAGCATCT+TGG - chr7_2:70464055-70464074 None:intergenic 30.0%
! GAATGTTTTCTATGTTTGAG+TGG + chr7_2:70464152-70464171 Msa1073100:intron 30.0%
TTTATGCATATTTATGCGCA+CGG - chr7_2:70464213-70464232 None:intergenic 30.0%
! CTTTTCAACTACACAAAAGT+CGG + chr7_2:70464385-70464404 Msa1073100:CDS 30.0%
! TTTTCAACTACACAAAAGTC+GGG + chr7_2:70464386-70464405 Msa1073100:CDS 30.0%
ATATACTCATGTCTCGATAA+GGG + chr7_2:70464451-70464470 Msa1073100:three_prime_UTR 30.0%
! GGAGATCCTAAAAATCATTT+TGG - chr7_2:70464656-70464675 None:intergenic 30.0%
CATTATTAGTCGTTAAATCG+TGG + chr7_2:70464798-70464817 Msa1073100:three_prime_UTR 30.0%
! ATTCTAGTTACTTGTGTGTA+AGG + chr7_2:70464963-70464982 Msa1073100:three_prime_UTR 30.0%
CTTCTTTCTTCTTCTCTTTG+GGG - chr7_2:70460296-70460315 None:intergenic 35.0%
AACAAGCTTAAAATCTTCCC+CGG - chr7_2:70460621-70460640 None:intergenic 35.0%
!! GGGAAGATTTTAAGCTTGTT+AGG + chr7_2:70460621-70460640 Msa1073100:CDS 35.0%
TACTGAGAGTGAGAATTTGT+TGG + chr7_2:70460663-70460682 Msa1073100:CDS 35.0%
! TAGGAAAGAAGGTTCTGTTT+TGG + chr7_2:70460723-70460742 Msa1073100:CDS 35.0%
!! TTATGACATATGGCCTTGTT+TGG + chr7_2:70460903-70460922 Msa1073100:intron 35.0%
GAAAAGCCCTTATCACTATA+AGG + chr7_2:70460950-70460969 Msa1073100:intron 35.0%
CATAAGCCCTTATAGTGATA+AGG - chr7_2:70460960-70460979 None:intergenic 35.0%
!! GCTGTTTTCGTAAGCTATAT+TGG + chr7_2:70461052-70461071 Msa1073100:intron 35.0%
CTGAGCTTATCTACTAACAT+AGG - chr7_2:70461160-70461179 None:intergenic 35.0%
TTATTTCCATAAGCTCTCCA+GGG + chr7_2:70461224-70461243 Msa1073100:intron 35.0%
AGCGAAAATTTGTCACTAGA+AGG + chr7_2:70461459-70461478 Msa1073100:intron 35.0%
GTTGAAAATGTTTGAGGAGA+TGG + chr7_2:70461928-70461947 Msa1073100:intron 35.0%
CGCTTTCGTCTAAAAATACT+AGG + chr7_2:70461986-70462005 Msa1073100:CDS 35.0%
!!! GACAACTTGTATTGTTTTGG+TGG + chr7_2:70462083-70462102 Msa1073100:intron 35.0%
GTAGGAATCATGTTAGATGT+TGG + chr7_2:70462295-70462314 Msa1073100:intron 35.0%
TGTGCTAAATTAGCGTATTG+AGG - chr7_2:70462401-70462420 None:intergenic 35.0%
GTGTTAGTGAAAAATAGGTG+GGG + chr7_2:70462555-70462574 Msa1073100:intron 35.0%
!!! GAGTTTTGAGGATTGAAGAA+TGG + chr7_2:70462695-70462714 Msa1073100:intron 35.0%
AGGATTGAAGAATGGGAAAA+GGG + chr7_2:70462703-70462722 Msa1073100:intron 35.0%
AATGCATTAGGGAATAGCTT+TGG + chr7_2:70462817-70462836 Msa1073100:intron 35.0%
!! TAAGGTTTTCTTTGGGAGTT+AGG - chr7_2:70463021-70463040 None:intergenic 35.0%
GACATTTAGTATGAGATGCT+GGG + chr7_2:70463248-70463267 Msa1073100:intron 35.0%
! TCATAAATACAAAGGCATGC+CGG - chr7_2:70463463-70463482 None:intergenic 35.0%
GATATACAACAACCATGGTA+AGG - chr7_2:70463494-70463513 None:intergenic 35.0%
ATGTCGTAGATCATATTCCT+GGG + chr7_2:70463832-70463851 Msa1073100:CDS 35.0%
CCATATTTATTGAGCCTCTA+CGG + chr7_2:70463934-70463953 Msa1073100:CDS 35.0%
! AGTGGATTCCTCTATATACA+AGG + chr7_2:70464170-70464189 Msa1073100:intron 35.0%
CCAAAGAACCTTGTATATAG+AGG - chr7_2:70464181-70464200 None:intergenic 35.0%
CCTCTATATACAAGGTTCTT+TGG + chr7_2:70464178-70464197 Msa1073100:intron 35.0%
TATTTCTTGTCACTCAGTTG+AGG + chr7_2:70464257-70464276 Msa1073100:intron 35.0%
! CTTTTGTGTAGTTGAAAAGC+TGG - chr7_2:70464384-70464403 None:intergenic 35.0%
CATATACTCATGTCTCGATA+AGG + chr7_2:70464450-70464469 Msa1073100:three_prime_UTR 35.0%
CTCAACTGCAAATGAAGTTA+TGG + chr7_2:70464531-70464550 Msa1073100:three_prime_UTR 35.0%
AGGCTAAACAAATGCAGTTA+TGG + chr7_2:70464591-70464610 Msa1073100:three_prime_UTR 35.0%
!! GATAAGTGTCGATTTCAACT+TGG - chr7_2:70464677-70464696 None:intergenic 35.0%
AGAACCTGAATGTTCTTGTT+AGG + chr7_2:70464774-70464793 Msa1073100:three_prime_UTR 35.0%
ATGACCTAACAAGAACATTC+AGG - chr7_2:70464781-70464800 None:intergenic 35.0%
! ACTTGTGTGTAAGGTTTGTT+TGG + chr7_2:70464972-70464991 Msa1073100:three_prime_UTR 35.0%
CAGTCTGCCATATAATAGAT+AGG - chr7_2:70465065-70465084 None:intergenic 35.0%
CTATCTATTATATGGCAGAC+TGG + chr7_2:70465063-70465082 Msa1073100:three_prime_UTR 35.0%
! TGCTGATGAAGAGGTTTTCA+CGG - chr7_2:70460364-70460383 None:intergenic 40.0%
AACGAGTACAGAAGCTTATC+CGG - chr7_2:70460590-70460609 None:intergenic 40.0%
ATTGAGAGGAGTAGGAAAGA+AGG + chr7_2:70460712-70460731 Msa1073100:CDS 40.0%
!!! GTTTTGGTTCATTGTTTCGC+TGG + chr7_2:70460739-70460758 Msa1073100:CDS 40.0%
CTTATTTCCATAAGCTCTCC+AGG + chr7_2:70461223-70461242 Msa1073100:intron 40.0%
!! GAAAGGAGTGTTAGTCTTAC+AGG + chr7_2:70461380-70461399 Msa1073100:intron 40.0%
!! TGTTTTTGTTTGCAGTGCAG+CGG + chr7_2:70461413-70461432 Msa1073100:intron 40.0%
! GAATTTGTTTGCCCCAATGA+TGG + chr7_2:70461800-70461819 Msa1073100:CDS 40.0%
!! TGCTCTAGAAAGCCATCATT+GGG - chr7_2:70461815-70461834 None:intergenic 40.0%
AGAGCAGGTGTGTATTATGA+AGG + chr7_2:70461829-70461848 Msa1073100:intron 40.0%
TCAAATAGTGGCTAGCATAG+CGG + chr7_2:70462352-70462371 Msa1073100:intron 40.0%
!! GAAAACACTGATTTGTACGC+AGG + chr7_2:70462525-70462544 Msa1073100:intron 40.0%
GAGGATTGAAGAATGGGAAA+AGG + chr7_2:70462702-70462721 Msa1073100:intron 40.0%
TTGAAGAATGGGAAAAGGGA+AGG + chr7_2:70462707-70462726 Msa1073100:intron 40.0%
GACTAAAACCCTCCGATATT+GGG + chr7_2:70462784-70462803 Msa1073100:intron 40.0%
CTTAGTTTCCCAATATCGGA+GGG - chr7_2:70462795-70462814 None:intergenic 40.0%
TCTTAGTTTCCCAATATCGG+AGG - chr7_2:70462796-70462815 None:intergenic 40.0%
!!! CGGAATCTCTCACTTTTTTG+GGG - chr7_2:70462947-70462966 None:intergenic 40.0%
!!! GCGGAATCTCTCACTTTTTT+GGG - chr7_2:70462948-70462967 None:intergenic 40.0%
!!! AGCGGAATCTCTCACTTTTT+TGG - chr7_2:70462949-70462968 None:intergenic 40.0%
TGGGAGGAATGAAAAGTTAG+CGG - chr7_2:70462967-70462986 None:intergenic 40.0%
!! GTTTTCTTTGGGAGTTAGGA+GGG - chr7_2:70463017-70463036 None:intergenic 40.0%
! GACAGCCGAATATTCTAAAG+TGG + chr7_2:70463226-70463245 Msa1073100:intron 40.0%
GGACATTTAGTATGAGATGC+TGG + chr7_2:70463247-70463266 Msa1073100:intron 40.0%
!! GGAGGGCATTAAACAAAACT+GGG - chr7_2:70463344-70463363 None:intergenic 40.0%
!! AGGAGGGCATTAAACAAAAC+TGG - chr7_2:70463345-70463364 None:intergenic 40.0%
TTTGTTTAATGCCCTCCTTG+TGG + chr7_2:70463347-70463366 Msa1073100:intron 40.0%
ATACCAGAACAGCTACTAGT+AGG - chr7_2:70463537-70463556 None:intergenic 40.0%
TCAGGTGAGAATCATTTCTC+AGG + chr7_2:70463660-70463679 Msa1073100:intron 40.0%
CAGGTGAGAATCATTTCTCA+GGG + chr7_2:70463661-70463680 Msa1073100:intron 40.0%
!! AGGATAGACAGTTCTAAGCT+TGG + chr7_2:70463687-70463706 Msa1073100:CDS 40.0%
! ACCTCTGAAGAAGTTTCAAC+AGG - chr7_2:70463729-70463748 None:intergenic 40.0%
TGTTGAAACTTCTTCAGAGG+TGG + chr7_2:70463728-70463747 Msa1073100:CDS 40.0%
GTTGAAACTTCTTCAGAGGT+GGG + chr7_2:70463729-70463748 Msa1073100:CDS 40.0%
CTTGCAATGCAACAATACGA+CGG - chr7_2:70463809-70463828 None:intergenic 40.0%
CATGTCGTAGATCATATTCC+TGG + chr7_2:70463831-70463850 Msa1073100:CDS 40.0%
TGTCGTAGATCATATTCCTG+GGG + chr7_2:70463833-70463852 Msa1073100:CDS 40.0%
CCGTAGAGGCTCAATAAATA+TGG - chr7_2:70463937-70463956 None:intergenic 40.0%
TATTTATTGAGCCTCTACGG+TGG + chr7_2:70463937-70463956 Msa1073100:CDS 40.0%
! CCAATTGAAGTATCCCAAAC+GGG - chr7_2:70464325-70464344 None:intergenic 40.0%
! CCCAATTGAAGTATCCCAAA+CGG - chr7_2:70464326-70464345 None:intergenic 40.0%
! CCGTTTGGGATACTTCAATT+GGG + chr7_2:70464323-70464342 Msa1073100:CDS 40.0%
TGGTGCAACAAGACTTACAT+GGG - chr7_2:70464423-70464442 None:intergenic 40.0%
CAAGAACAATGGAGAAAAGG+TGG - chr7_2:70464480-70464499 None:intergenic 40.0%
! CACCTTTTCTCCATTGTTCT+TGG + chr7_2:70464478-70464497 Msa1073100:three_prime_UTR 40.0%
GTCCAAGAACAATGGAGAAA+AGG - chr7_2:70464483-70464502 None:intergenic 40.0%
GAATGCAAGTCCAAGAACAA+TGG - chr7_2:70464491-70464510 None:intergenic 40.0%
CAAATGCAGTTATGGTTGAG+AGG + chr7_2:70464599-70464618 Msa1073100:three_prime_UTR 40.0%
! GGATATCAAGTTGTCTCTGT+AGG + chr7_2:70464819-70464838 Msa1073100:three_prime_UTR 40.0%
! TGTGTGTAAGGTTTGTTTGG+TGG + chr7_2:70464975-70464994 Msa1073100:three_prime_UTR 40.0%
!! TTCTTCTTCTCTTTGGGGTG+AGG - chr7_2:70460291-70460310 None:intergenic 45.0%
!! ATGAGGTAAGGCATCGGAAT+CGG - chr7_2:70460341-70460360 None:intergenic 45.0%
! AGGTTTTCACGGATGAGGTA+AGG - chr7_2:70460353-70460372 None:intergenic 45.0%
! TGAAGAGGTTTTCACGGATG+AGG - chr7_2:70460358-70460377 None:intergenic 45.0%
CGATGATGTTGCTGATGAAG+AGG - chr7_2:70460373-70460392 None:intergenic 45.0%
! GGTGGTGGTTTGGAGAATTT+CGG - chr7_2:70460402-70460421 None:intergenic 45.0%
! CTTTGGAGATCTCCTTGACA+GGG - chr7_2:70460523-70460542 None:intergenic 45.0%
! ACTTTGGAGATCTCCTTGAC+AGG - chr7_2:70460524-70460543 None:intergenic 45.0%
ACGAGTACAGAAGCTTATCC+GGG - chr7_2:70460589-70460608 None:intergenic 45.0%
GGATAAGCTTCTGTACTCGT+TGG + chr7_2:70460589-70460608 Msa1073100:CDS 45.0%
!! GTTTCGCTGGTGTTTCTAGA+AGG + chr7_2:70460752-70460771 Msa1073100:CDS 45.0%
!! AAGCTGTTTTCAAGGTACCC+TGG - chr7_2:70461244-70461263 None:intergenic 45.0%
TTGCAGTGCAGCGGTTATTA+CGG + chr7_2:70461422-70461441 Msa1073100:intron 45.0%
GCTCTGCTTTAACGATGCAA+GGG - chr7_2:70461777-70461796 None:intergenic 45.0%
AGCTCTGCTTTAACGATGCA+AGG - chr7_2:70461778-70461797 None:intergenic 45.0%
!! GCTCTAGAAAGCCATCATTG+GGG - chr7_2:70461814-70461833 None:intergenic 45.0%
!! CTGCTCTAGAAAGCCATCAT+TGG - chr7_2:70461816-70461835 None:intergenic 45.0%
!! CAATGATGGCTTTCTAGAGC+AGG + chr7_2:70461814-70461833 Msa1073100:CDS 45.0%
! GTTTGAGGAGATGGGTTTCA+AGG + chr7_2:70461937-70461956 Msa1073100:CDS 45.0%
!! GACGAAAGCGCTTGTATACA+GGG - chr7_2:70461976-70461995 None:intergenic 45.0%
!! AGACGAAAGCGCTTGTATAC+AGG - chr7_2:70461977-70461996 None:intergenic 45.0%
TCACGACTTCCTTCATGTTG+TGG + chr7_2:70462022-70462041 Msa1073100:intron 45.0%
CACGACTTCCTTCATGTTGT+GGG + chr7_2:70462023-70462042 Msa1073100:intron 45.0%
!! AGCTAGCTTTAACGGCACTA+CGG + chr7_2:70462433-70462452 Msa1073100:intron 45.0%
TCACGAATCGCGAAGAATAG+TGG - chr7_2:70462503-70462522 None:intergenic 45.0%
TTCCTCTGTCTTGCATAGCT+AGG + chr7_2:70462637-70462656 Msa1073100:intron 45.0%
TCCTCTGTCTTGCATAGCTA+GGG + chr7_2:70462638-70462657 Msa1073100:intron 45.0%
TGCATAGCTAGGGCTATGTT+TGG + chr7_2:70462648-70462667 Msa1073100:intron 45.0%
GCATAGCTAGGGCTATGTTT+GGG + chr7_2:70462649-70462668 Msa1073100:intron 45.0%
TAGGGCTATGTTTGGGAGTT+TGG + chr7_2:70462656-70462675 Msa1073100:intron 45.0%
GCTATGTTTGGGAGTTTGGT+GGG + chr7_2:70462660-70462679 Msa1073100:intron 45.0%
! TTTGGGAGTTTGGTGGGAAA+TGG + chr7_2:70462666-70462685 Msa1073100:intron 45.0%
AATGGGAAAAGGGAAGGAGA+AGG + chr7_2:70462713-70462732 Msa1073100:intron 45.0%
ATGGGAAAAGGGAAGGAGAA+GGG + chr7_2:70462714-70462733 Msa1073100:intron 45.0%
GGACTAAAACCCTCCGATAT+TGG + chr7_2:70462783-70462802 Msa1073100:intron 45.0%
!! GCATTAGGGAATAGCTTTGG+AGG + chr7_2:70462820-70462839 Msa1073100:intron 45.0%
!! GGTTTTCTTTGGGAGTTAGG+AGG - chr7_2:70463018-70463037 None:intergenic 45.0%
GTTCCTACTAGTAGCTGTTC+TGG + chr7_2:70463531-70463550 Msa1073100:intron 45.0%
AGAATCATTTCTCAGGGTCG+AGG + chr7_2:70463667-70463686 Msa1073100:CDS 45.0%
GCCTGTTGAAACTTCTTCAG+AGG + chr7_2:70463725-70463744 Msa1073100:CDS 45.0%
CACTTCTTGCAGCGATATGT+AGG - chr7_2:70463786-70463805 None:intergenic 45.0%
GTAGATCATATTCCTGGGGA+GGG + chr7_2:70463837-70463856 Msa1073100:CDS 45.0%
TCTTGTCACTCAGTTGAGGA+AGG + chr7_2:70464261-70464280 Msa1073100:intron 45.0%
! CCCGTTTGGGATACTTCAAT+TGG + chr7_2:70464322-70464341 Msa1073100:CDS 45.0%
TTGGGATACTTCAATTGGGC+AGG + chr7_2:70464327-70464346 Msa1073100:CDS 45.0%
GGTGCAACAAGACTTACATG+GGG - chr7_2:70464422-70464441 None:intergenic 45.0%
GTGGTGCAACAAGACTTACA+TGG - chr7_2:70464424-70464443 None:intergenic 45.0%
TCATTTGCAGTTGAGCAGCT+AGG - chr7_2:70464526-70464545 None:intergenic 45.0%
CATACCTGCTCAAGATTTCG+AGG + chr7_2:70464571-70464590 Msa1073100:three_prime_UTR 45.0%
TTAGCCTCGAAATCTTGAGC+AGG - chr7_2:70464578-70464597 None:intergenic 45.0%
! GTAAGGTTTGTTTGGTGGCT+AGG + chr7_2:70464980-70464999 Msa1073100:three_prime_UTR 45.0%
TCGGAATCGGAATGGAGGAT+CGG - chr7_2:70460328-70460347 None:intergenic 50.0%
!! GTAAGGCATCGGAATCGGAA+TGG - chr7_2:70460336-70460355 None:intergenic 50.0%
TCACGGATGAGGTAAGGCAT+CGG - chr7_2:70460347-70460366 None:intergenic 50.0%
AGGATGTGGGTGATGTTGTG+GGG - chr7_2:70460440-70460459 None:intergenic 50.0%
GAGGATGTGGGTGATGTTGT+GGG - chr7_2:70460441-70460460 None:intergenic 50.0%
AGAGGATGTGGGTGATGTTG+TGG - chr7_2:70460442-70460461 None:intergenic 50.0%
GGAGAAGAAGGAGATGGAAG+CGG - chr7_2:70460477-70460496 None:intergenic 50.0%
CCATTCGGAGAAGAAGGAGA+TGG - chr7_2:70460483-70460502 None:intergenic 50.0%
CCATCTCCTTCTTCTCCGAA+TGG + chr7_2:70460480-70460499 Msa1073100:CDS 50.0%
AGAACGCCATTCGGAGAAGA+AGG - chr7_2:70460489-70460508 None:intergenic 50.0%
GGAGAAGGAAGAACGCCATT+CGG - chr7_2:70460498-70460517 None:intergenic 50.0%
GAGGTCGGAGACATGAACTT+TGG - chr7_2:70460540-70460559 None:intergenic 50.0%
CGAGTACAGAAGCTTATCCG+GGG - chr7_2:70460588-70460607 None:intergenic 50.0%
CTGTACTCGTTGGAATACGC+CGG + chr7_2:70460599-70460618 Msa1073100:CDS 50.0%
TGTACTCGTTGGAATACGCC+GGG + chr7_2:70460600-70460619 Msa1073100:CDS 50.0%
CTCACTCTCAGTATCCTCAG+CGG - chr7_2:70460656-70460675 None:intergenic 50.0%
GCATGCTTATGTCACTGCGT+AGG - chr7_2:70460883-70460902 None:intergenic 50.0%
! AAGGTACCCTGGAGAGCTTA+TGG - chr7_2:70461233-70461252 None:intergenic 50.0%
!! TAACGATGCAAGGGCATCTG+CGG - chr7_2:70461768-70461787 None:intergenic 50.0%
CATGAGGTCCCACAACATGA+AGG - chr7_2:70462034-70462053 None:intergenic 50.0%
GGCTATGTTTGGGAGTTTGG+TGG + chr7_2:70462659-70462678 Msa1073100:intron 50.0%
! GGAGTTTGGTGGGAAATGGA+GGG + chr7_2:70462670-70462689 Msa1073100:intron 50.0%
! GAGTTTGGTGGGAAATGGAG+GGG + chr7_2:70462671-70462690 Msa1073100:intron 50.0%
! AGTTTGGTGGGAAATGGAGG+GGG + chr7_2:70462672-70462691 Msa1073100:intron 50.0%
! AAATGGAGGGGGGAGTTTTG+AGG + chr7_2:70462683-70462702 Msa1073100:intron 50.0%
GAGTTAGGAGGGAAACGAAG+GGG - chr7_2:70463006-70463025 None:intergenic 50.0%
GGAGTTAGGAGGGAAACGAA+GGG - chr7_2:70463007-70463026 None:intergenic 50.0%
GTTTAATGCCCTCCTTGTGG+TGG + chr7_2:70463350-70463369 Msa1073100:intron 50.0%
TGGGAGAAGGCTGAGGTTAT+TGG + chr7_2:70463381-70463400 Msa1073100:intron 50.0%
!! TCTAAGCTTGGTGCAGATCC+TGG + chr7_2:70463699-70463718 Msa1073100:CDS 50.0%
GAAGTTTCAACAGGCATGCC+AGG - chr7_2:70463720-70463739 None:intergenic 50.0%
CGTAGATCATATTCCTGGGG+AGG + chr7_2:70463836-70463855 Msa1073100:CDS 50.0%
CCATCTTTCATCCACCGTAG+AGG - chr7_2:70463951-70463970 None:intergenic 50.0%
CCTCTACGGTGGATGAAAGA+TGG + chr7_2:70463948-70463967 Msa1073100:CDS 50.0%
TGCTCATTGTGATGCCCGTT+TGG + chr7_2:70464308-70464327 Msa1073100:CDS 50.0%
GCTCATTGTGATGCCCGTTT+GGG + chr7_2:70464309-70464328 Msa1073100:CDS 50.0%
TACAATGCAGCTGTGGAAGC+TGG + chr7_2:70464352-70464371 Msa1073100:CDS 50.0%
CGGAATCGGAATGGAGGATC+GGG - chr7_2:70460327-70460346 None:intergenic 55.0%
!! AGGCATCGGAATCGGAATGG+AGG - chr7_2:70460333-70460352 None:intergenic 55.0%
GGATGTGGGTGATGTTGTGG+GGG - chr7_2:70460439-70460458 None:intergenic 55.0%
GCTGAGAACGGAGAGGATGT+GGG - chr7_2:70460453-70460472 None:intergenic 55.0%
AGCTGAGAACGGAGAGGATG+TGG - chr7_2:70460454-70460473 None:intergenic 55.0%
GATGGAAGCGGAGCTGAGAA+CGG - chr7_2:70460465-70460484 None:intergenic 55.0%
TTCCTTCTCCGTCCCTGTCA+AGG + chr7_2:70460508-70460527 Msa1073100:CDS 55.0%
GGAGATCTCCTTGACAGGGA+CGG - chr7_2:70460519-70460538 None:intergenic 55.0%
TCATGTCTCCGACCTCCCTA+CGG + chr7_2:70460544-70460563 Msa1073100:CDS 55.0%
AAGCTTATCCGGGGAGAGAG+CGG - chr7_2:70460579-70460598 None:intergenic 55.0%
GTACTCGTTGGAATACGCCG+GGG + chr7_2:70460601-70460620 Msa1073100:CDS 55.0%
GTCTTCAGGGACTTCGCGTT+TGG + chr7_2:70461516-70461535 Msa1073100:intron 55.0%
GCCCTAGCTATGCAAGACAG+AGG - chr7_2:70462642-70462661 None:intergenic 55.0%
! GGGAGTTTGGTGGGAAATGG+AGG + chr7_2:70462669-70462688 Msa1073100:intron 55.0%
! GTTTGGTGGGAAATGGAGGG+GGG + chr7_2:70462673-70462692 Msa1073100:intron 55.0%
!! AAGGCTTTGGAGGGAATGGG+AGG - chr7_2:70462983-70463002 None:intergenic 55.0%
!! GGGAAGGCTTTGGAGGGAAT+GGG - chr7_2:70462986-70463005 None:intergenic 55.0%
!! ACGAAGGGGAAGGCTTTGGA+GGG - chr7_2:70462992-70463011 None:intergenic 55.0%
! AACGAAGGGGAAGGCTTTGG+AGG - chr7_2:70462993-70463012 None:intergenic 55.0%
GGAAACGAAGGGGAAGGCTT+TGG - chr7_2:70462996-70463015 None:intergenic 55.0%
TAGGAGGGAAACGAAGGGGA+AGG - chr7_2:70463002-70463021 None:intergenic 55.0%
GGGAGTTAGGAGGGAAACGA+AGG - chr7_2:70463008-70463027 None:intergenic 55.0%
TCCCTCAACCACCACAAGGA+GGG - chr7_2:70463361-70463380 None:intergenic 55.0%
ATCCCTCAACCACCACAAGG+AGG - chr7_2:70463362-70463381 None:intergenic 55.0%
TCCTTGTGGTGGTTGAGGGA+TGG + chr7_2:70463361-70463380 Msa1073100:intron 55.0%
CCTTGTGGTGGTTGAGGGAT+GGG + chr7_2:70463362-70463381 Msa1073100:intron 55.0%
AGGGTGAGACATCCTTTGGC+TGG + chr7_2:70463856-70463875 Msa1073100:CDS 55.0%
CATCCTTTGGCTGGCACAAG+CGG + chr7_2:70463865-70463884 Msa1073100:CDS 55.0%
TTTCCGCTTGTGCCAGCCAA+AGG - chr7_2:70463871-70463890 None:intergenic 55.0%
ACGGGCATCACAATGAGCAC+AGG - chr7_2:70464307-70464326 None:intergenic 55.0%
GCAGGCATACAATGCAGCTG+TGG + chr7_2:70464345-70464364 Msa1073100:CDS 55.0%
!! TGGTGGTGGTGGTGGTGGTT+TGG - chr7_2:70460412-70460431 None:intergenic 60.0%
GTGGGTGATGTTGTGGGGGA+CGG - chr7_2:70460435-70460454 None:intergenic 60.0%
AAGCGGAGCTGAGAACGGAG+AGG - chr7_2:70460460-70460479 None:intergenic 60.0%
CTCCTTGACAGGGACGGAGA+AGG - chr7_2:70460513-70460532 None:intergenic 60.0%
! TTAGGATGGCTGTGCCGCTG+AGG + chr7_2:70460639-70460658 Msa1073100:CDS 60.0%
!! GGGGAAGGCTTTGGAGGGAA+TGG - chr7_2:70462987-70463006 None:intergenic 60.0%
TGCCCTCCTTGTGGTGGTTG+AGG + chr7_2:70463356-70463375 Msa1073100:intron 60.0%
GCCCTCCTTGTGGTGGTTGA+GGG + chr7_2:70463357-70463376 Msa1073100:intron 60.0%
CCCATCCCTCAACCACCACA+AGG - chr7_2:70463365-70463384 None:intergenic 60.0%
GGTGGTTGAGGGATGGGAGA+AGG + chr7_2:70463368-70463387 Msa1073100:intron 60.0%
TGAGGGATGGGAGAAGGCTG+AGG + chr7_2:70463374-70463393 Msa1073100:intron 60.0%
AAGGATGTCTCACCCTCCCC+AGG - chr7_2:70463852-70463871 None:intergenic 60.0%
GGGGAGGGTGAGACATCCTT+TGG + chr7_2:70463852-70463871 Msa1073100:CDS 60.0%
GGCTGGCACAAGCGGAAAAG+TGG + chr7_2:70463873-70463892 Msa1073100:CDS 60.0%
! CTCAGTTGAGGAAGGCGCGT+TGG + chr7_2:70464269-70464288 Msa1073100:intron 60.0%
! AGTTGAGGAAGGCGCGTTGG+AGG + chr7_2:70464272-70464291 Msa1073100:intron 60.0%
! GTTGAGGAAGGCGCGTTGGA+GGG + chr7_2:70464273-70464292 Msa1073100:intron 60.0%
GATGTTGTGGGGGACGGTGG+TGG - chr7_2:70460429-70460448 None:intergenic 65.0%
GGTGATGTTGTGGGGGACGG+TGG - chr7_2:70460432-70460451 None:intergenic 65.0%
! ATCCGGGGAGAGAGCGGACT+TGG - chr7_2:70460573-70460592 None:intergenic 65.0%
!! GACGGTGGTGGTGGTGGTGG+TGG - chr7_2:70460417-70460436 None:intergenic 70.0%
! GTTGTGGGGGACGGTGGTGG+TGG - chr7_2:70460426-70460445 None:intergenic 70.0%
CTTGGCGGCCGTAGGGAGGT+CGG - chr7_2:70460555-70460574 None:intergenic 70.0%
! GAGCGGACTTGGCGGCCGTA+GGG - chr7_2:70460562-70460581 None:intergenic 70.0%
! AGAGCGGACTTGGCGGCCGT+AGG - chr7_2:70460563-70460582 None:intergenic 70.0%
! CGGGGAGAGAGCGGACTTGG+CGG - chr7_2:70460570-70460589 None:intergenic 70.0%
CGCCAAGTCCGCTCTCTCCC+CGG + chr7_2:70460568-70460587 Msa1073100:CDS 70.0%
!! GGGGACGGTGGTGGTGGTGG+TGG - chr7_2:70460420-70460439 None:intergenic 75.0%
!! GTGGGGGACGGTGGTGGTGG+TGG - chr7_2:70460423-70460442 None:intergenic 75.0%
CGGACTTGGCGGCCGTAGGG+AGG - chr7_2:70460559-70460578 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr7_2 gene 70460276 70465108 70460276 ID=Msa1073100;Name=Msa1073100
chr7_2 mRNA 70460276 70465108 70460276 ID=Msa1073100-mRNA-1;Parent=Msa1073100;Name=Msa1073100-mRNA-1;_AED=0.12;_eAED=0.12;_QI=71|0.75|1|1|1|1|5|680|343
chr7_2 exon 70460276 70460773 70460276 ID=Msa1073100-mRNA-1:exon:15865;Parent=Msa1073100-mRNA-1
chr7_2 exon 70461771 70461835 70461771 ID=Msa1073100-mRNA-1:exon:15866;Parent=Msa1073100-mRNA-1
chr7_2 exon 70461929 70462007 70461929 ID=Msa1073100-mRNA-1:exon:15867;Parent=Msa1073100-mRNA-1
chr7_2 exon 70463664 70463969 70463664 ID=Msa1073100-mRNA-1:exon:15868;Parent=Msa1073100-mRNA-1
chr7_2 exon 70464274 70465108 70464274 ID=Msa1073100-mRNA-1:exon:15869;Parent=Msa1073100-mRNA-1
chr7_2 five_prime_UTR 70460276 70460346 70460276 ID=Msa1073100-mRNA-1:five_prime_utr;Parent=Msa1073100-mRNA-1
chr7_2 CDS 70460347 70460773 70460347 ID=Msa1073100-mRNA-1:cds;Parent=Msa1073100-mRNA-1
chr7_2 CDS 70461771 70461835 70461771 ID=Msa1073100-mRNA-1:cds;Parent=Msa1073100-mRNA-1
chr7_2 CDS 70461929 70462007 70461929 ID=Msa1073100-mRNA-1:cds;Parent=Msa1073100-mRNA-1
chr7_2 CDS 70463664 70463969 70463664 ID=Msa1073100-mRNA-1:cds;Parent=Msa1073100-mRNA-1
chr7_2 CDS 70464274 70464428 70464274 ID=Msa1073100-mRNA-1:cds;Parent=Msa1073100-mRNA-1
chr7_2 three_prime_UTR 70464429 70465108 70464429 ID=Msa1073100-mRNA-1:three_prime_utr;Parent=Msa1073100-mRNA-1
Gene Sequence

>Msa1073100

ATGCCTTACCTCATCCGTGAAAACCTCTTCATCAGCAACATCATCGACGCTGCCGAAATTCTCCAAACCACCACCACCACCACCACCGTCCCCCACAACATCACCCACATCCTCTCCGTTCTCAGCTCCGCTTCCATCTCCTTCTTCTCCGAATGGCGTTCTTCCTTCTCCGTCCCTGTCAAGGAGATCTCCAAAGTTCATGTCTCCGACCTCCCTACGGCCGCCAAGTCCGCTCTCTCCCCGGATAAGCTTCTGTACTCGTTGGAATACGCCGGGGAAGATTTTAAGCTTGTTAGGATGGCTGTGCCGCTGAGGATACTGAGAGTGAGAATTTGTTGGATTACCTCGAAGTTTGTGTTGATTTTATTGAGAGGAGTAGGAAAGAAGGTTCTGTTTTGGTTCATTGTTTCGCTGGTGTTTCTAGAAGATGCCCTTGCATCGTTAAAGCAGAGCTGTGAATTTGTTTGCCCCAATGATGGCTTTCTAGAGCAGTTGAAAATGTTTGAGGAGATGGGTTTCAAGGTTGATCAATCTAGCCCTGTATACAAGCGCTTTCGTCTAAAAATACTAGGTGAGAATCATTTCTCAGGGTCGAGGATAGACAGTTCTAAGCTTGGTGCAGATCCTGGCATGCCTGTTGAAACTTCTTCAGAGGTGGGAGAAGCTACTAAAGTAGAAAATAATCGTAGTCCTACATATCGCTGCAAGAAGTGCCGTCGTATTGTTGCATTGCAAGAACATGTCGTAGATCATATTCCTGGGGAGGGTGAGACATCCTTTGGCTGGCACAAGCGGAAAAGTGGCAATCCTTTTAACAAGTCTAATGAATCTGAGTGTTCGTCCATATTTATTGAGCCTCTACGGTGGATGAAAGATGTTGAGGAAGGCGCGTTGGAGGGAAAACTGTCCTGTGCTCATTGTGATGCCCGTTTGGGATACTTCAATTGGGCAGGCATACAATGCAGCTGTGGAAGCTGGATAACACCAGCTTTTCAACTACACAAAAGTCGGGTAGATATAAGCCCCATGTAA
Protein sequence

>Msa1073100

MPYLIRENLFISNIIDAAEILQTTTTTTTVPHNITHILSVLSSASISFFSEWRSSFSVPVKEISKVHVSDLPTAAKSALSPDKLLYSLEYAGEDFKLVRMAVPLRILRVRICWITSKFVLILLRGVGKKVLFWFIVSLVFLEDALASLKQSCEFVCPNDGFLEQLKMFEEMGFKVDQSSPVYKRFRLKILGENHFSGSRIDSSKLGADPGMPVETSSEVGEATKVENNRSPTYRCKKCRRIVALQEHVVDHIPGEGETSFGWHKRKSGNPFNKSNESECSSIFIEPLRWMKDVEEGALEGKLSCAHCDARLGYFNWAGIQCSCGSWITPAFQLHKSRVDISPM*