AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0065670


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0065670 MtrunA17_Chr1g0169361 98.913 368 4 0 1 368 417 784 0.0 730
Msa0065670 MtrunA17_Chr6g0465161 32.997 397 193 13 1 368 358 710 3.87e-51 181
Msa0065670 MtrunA17_Chr7g0230671 30.392 306 175 7 1 292 378 659 9.04e-39 146
Msa0065670 MtrunA17_Chr4g0012061 38.150 173 105 2 1 173 390 560 3.86e-38 145
Msa0065670 MtrunA17_Chr1g0148121 37.017 181 105 3 6 186 375 546 4.19e-34 133
Msa0065670 MtrunA17_Chr3g0136721 30.268 261 166 3 1 261 382 626 5.84e-33 130
Msa0065670 MtrunA17_Chr1g0199921 24.699 166 125 0 4 169 452 617 3.11e-22 98.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0065670 AT3G24190.1 81.030 369 69 1 1 368 425 793 0.0 603
Msa0065670 AT1G71810.1 31.807 393 192 12 2 368 350 692 2.31e-46 168
Msa0065670 AT1G79600.1 40.805 174 101 2 1 174 385 556 3.58e-40 151
Msa0065670 AT4G31390.3 36.464 181 106 3 6 186 212 383 9.53e-34 130
Msa0065670 AT4G31390.2 36.464 181 106 3 6 186 386 557 1.41e-33 132
Msa0065670 AT4G31390.1 36.464 181 106 3 6 186 411 582 1.72e-33 132
Msa0065670 AT5G24970.1 29.804 255 157 4 1 253 391 625 7.19e-32 127
Msa0065670 AT5G24970.3 29.804 255 157 4 1 253 394 628 7.23e-32 127
Msa0065670 AT5G24970.2 29.804 255 157 4 1 253 433 667 7.92e-32 127
Msa0065670 AT2G39190.2 29.091 165 117 0 4 168 454 618 9.67e-25 106

Find 137 sgRNAs with CRISPR-Local

Find 313 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CATACTTTGCCCTTATAATT+AGG 0.089687 1_2:-28253963 Msa0065670:CDS
GCTTTACGTTACACTATATA+TGG 0.194317 1_2:-28253213 Msa0065670:CDS
TCAAGAACTCCAGCACTTTC+TGG 0.201641 1_2:+28252003 None:intergenic
CCCCGATAGCCCTAATTATA+AGG 0.235389 1_2:+28253953 None:intergenic
ATCCTCTCCACCTCCACTTT+TGG 0.254419 1_2:+28253119 None:intergenic
TCTTATCACAGTTCAATTTC+AGG 0.258508 1_2:-28256464 Msa0065670:five_prime_UTR
ATACTTTGCCCTTATAATTA+GGG 0.262467 1_2:-28253962 Msa0065670:CDS
GATTAATGAACAAGGGTAAA+TGG 0.271358 1_2:+28251570 None:intergenic
AATTAGGGCTATCGGGGTTT+TGG 0.280919 1_2:-28253947 Msa0065670:CDS
TATATTATATTTATATATAC+TGG 0.288472 1_2:+28251594 None:intergenic
GTAGGTACCATACCGAAAAT+AGG 0.294048 1_2:+28252098 None:intergenic
AATTATACCTGTGCAATATA+TGG 0.302271 1_2:+28253871 None:intergenic
AGAACTTCTGCCAGTGTTGC+CGG 0.306484 1_2:-28251775 Msa0065670:CDS
GTATACTTGCTGTAAGTTCT+TGG 0.331390 1_2:+28256433 None:intergenic
CCCTTATAATTAGGGCTATC+GGG 0.332300 1_2:-28253954 Msa0065670:CDS
GGATCTAAATTGACTCCATC+TGG 0.344181 1_2:+28254114 None:intergenic
TTATTTCAGCTGCTTGATAC+TGG 0.344397 1_2:-28255554 Msa0065670:intron
TTCTTAGCAGATTATCTTCT+CGG 0.345784 1_2:-28251725 Msa0065670:CDS
AACTTTATCCTCTTCAGTTA+TGG 0.348424 1_2:+28252040 None:intergenic
CTAATTATAAGGGCAAAGTA+TGG 0.349214 1_2:+28253964 None:intergenic
TTTAACGAAGTCTTTCACTA+TGG 0.351984 1_2:+28254149 None:intergenic
GTCTTTGACCAGGCTTTAGA+AGG 0.356423 1_2:-28254069 Msa0065670:CDS
AATAGCCAGCATAATCGATT+TGG 0.358334 1_2:+28251492 None:intergenic
TGTGGGTGGATTAAGCATTA+AGG 0.366442 1_2:+28251653 None:intergenic
TTGACCGACGATCAAAAGTA+TGG 0.371660 1_2:-28254216 Msa0065670:CDS
GCCCTTATAATTAGGGCTAT+CGG 0.378622 1_2:-28253955 Msa0065670:CDS
TTAAACCATGGTAGTCAAAT+CGG 0.380184 1_2:+28256556 None:intergenic
CCGGTCAGAATATCTCTTGC+CGG 0.382765 1_2:-28253058 Msa0065670:CDS
TACACTATATATGGGAAATC+TGG 0.386187 1_2:-28253204 Msa0065670:CDS
GCAACACTGGCAGAAGTTCT+TGG 0.389343 1_2:+28251778 None:intergenic
ACGAAGTCTTTCACTATGGC+TGG 0.396425 1_2:+28254153 None:intergenic
TTTGCAAGCACTGGCAAGAT+AGG 0.409252 1_2:+28254093 None:intergenic
TTGGAAGGGATAGCTTTAGT+AGG 0.425825 1_2:-28253928 Msa0065670:CDS
CCCCTCCACCTTCTAAAGCC+TGG 0.432654 1_2:+28254061 None:intergenic
AGCTTGGGCTTATTACTAAC+CGG 0.433633 1_2:-28253077 Msa0065670:CDS
CCCGATAGCCCTAATTATAA+GGG 0.441218 1_2:+28253954 None:intergenic
GATAATCTGCTAAGAACATC+AGG 0.444598 1_2:+28251732 None:intergenic
GCCCGTGTTTCCACTGGCTG+CGG 0.444691 1_2:+28253009 None:intergenic
TCATCAACAATGGCAAAATC+AGG 0.448007 1_2:+28253901 None:intergenic
AGAGGATCTGAAAGGGAGTA+TGG 0.453042 1_2:-28253103 Msa0065670:CDS
AAACTTGCAATACTTGACTT+TGG 0.456974 1_2:-28255479 Msa0065670:intron
GAGGTGGAGAGGATCTGAAA+GGG 0.458984 1_2:-28253110 Msa0065670:CDS
TCTGTCAAGCACATCTAGTC+AGG 0.463598 1_2:-28251967 Msa0065670:intron
ATTGTGTATATTTGACAGAA+TGG 0.465438 1_2:-28251630 Msa0065670:three_prime_UTR
CTTTACGTTACACTATATAT+GGG 0.466517 1_2:-28253212 Msa0065670:CDS
CCTCGTCCAAAAGAAATTCT+CGG 0.466532 1_2:+28252947 None:intergenic
GTCGGAGAATTAGTTAATGT+TGG 0.469559 1_2:-28256343 Msa0065670:five_prime_UTR
AGTCATCTGCTACCTAAAAC+AGG 0.471762 1_2:-28256320 Msa0065670:intron
AGGGCTGCCCGTGTTTCCAC+TGG 0.474496 1_2:+28253003 None:intergenic
GTGAAAGACTTCGTTAAACT+TGG 0.475881 1_2:-28254144 Msa0065670:CDS
TATTTATATATACTGGTATG+TGG 0.478038 1_2:+28251601 None:intergenic
TTCGGTATGGTACCTACCAT+TGG 0.478269 1_2:-28252092 Msa0065670:CDS
TTTATTACAGCTGCCAAAAG+TGG 0.497079 1_2:-28253132 Msa0065670:CDS
GACCAGGCTTTAGAAGGTGG+AGG 0.497384 1_2:-28254063 Msa0065670:CDS
TGCATTCTGAACTCCTAGTA+AGG 0.499806 1_2:+28252124 None:intergenic
GTAAGAATTATGTCCTTACT+AGG 0.500477 1_2:-28252137 Msa0065670:CDS
AAAGGGAGTATGGCTGAGCT+TGG 0.501167 1_2:-28253093 Msa0065670:CDS
TAGGTACCATACCGAAAATA+GGG 0.501824 1_2:+28252099 None:intergenic
TCTTAGCAGATTATCTTCTC+GGG 0.503708 1_2:-28251724 Msa0065670:CDS
TAATTATAAGGGCAAAGTAT+GGG 0.504028 1_2:+28253965 None:intergenic
GCAGAGATGCCCGGCAACAC+TGG 0.505198 1_2:+28251765 None:intergenic
CGGTCAGAATATCTCTTGCC+GGG 0.507660 1_2:-28253057 Msa0065670:CDS
TTTATCCTCTTCAGTTATGG+TGG 0.508378 1_2:+28252043 None:intergenic
TAAACCATGGTAGTCAAATC+GGG 0.508472 1_2:+28256557 None:intergenic
GTGCTGGAGTTCTTGACTGC+AGG 0.510421 1_2:-28251996 Msa0065670:CDS
GGAGGGTTCTTACAACAGAA+TGG 0.511423 1_2:-28256405 Msa0065670:five_prime_UTR
GGAGGTGGAGAGGATCTGAA+AGG 0.512007 1_2:-28253111 Msa0065670:CDS
TGCTGTGACAAGGGAACAAA+TGG 0.515122 1_2:-28252159 Msa0065670:CDS
AACCGCAGCCAGTGGAAACA+CGG 0.515912 1_2:-28253011 Msa0065670:CDS
AATATGATCCGCACTCCTGA+TGG 0.516841 1_2:-28255503 Msa0065670:CDS
TGTCAAATATACACAATTGT+GGG 0.517727 1_2:+28251636 None:intergenic
TTACTGATAGAGACTCTTGA+CGG 0.519048 1_2:-28253259 Msa0065670:intron
GAACTTCTGCCAGTGTTGCC+GGG 0.520134 1_2:-28251774 Msa0065670:CDS
CTGTCAAATATACACAATTG+TGG 0.521036 1_2:+28251635 None:intergenic
GCTTGCAAAGGTCTTTGACC+AGG 0.523145 1_2:-28254079 Msa0065670:CDS
TCAAAGACCTTTGCAAGCAC+TGG 0.524525 1_2:+28254084 None:intergenic
GATGTTACAGACTGGAATCC+CGG 0.531571 1_2:+28253039 None:intergenic
CGGATGAATCCCCTCGGCTA+AGG 0.532282 1_2:-28253239 Msa0065670:CDS
TTTGACCAGGCTTTAGAAGG+TGG 0.532307 1_2:-28254066 Msa0065670:CDS
AATTGCTCATCTCATCCATC+GGG 0.532594 1_2:-28254181 Msa0065670:CDS
AAACATCAACTTTCAGGAGC+TGG 0.534626 1_2:-28254034 Msa0065670:CDS
TTTCATGCTGATCCTCACCC+GGG 0.534686 1_2:-28255527 Msa0065670:five_prime_UTR
ACCAGGCTTTAGAAGGTGGA+GGG 0.538065 1_2:-28254062 Msa0065670:CDS
AAACTTGGTTTCATCCCAGA+TGG 0.540981 1_2:-28254129 Msa0065670:CDS
AAGGGAGTATGGCTGAGCTT+GGG 0.543384 1_2:-28253092 Msa0065670:CDS
TTATCCTCTTCAGTTATGGT+GGG 0.547564 1_2:+28252044 None:intergenic
CAATTGCTCATCTCATCCAT+CGG 0.555375 1_2:-28254182 Msa0065670:CDS
ATAAGCCAAATCGATTATGC+TGG 0.555706 1_2:-28251497 Msa0065670:three_prime_UTR
AATTATAAGGGCAAAGTATG+GGG 0.557155 1_2:+28253966 None:intergenic
CAGAGCAAAGAAAGCAATGT+CGG 0.560609 1_2:-28256361 Msa0065670:five_prime_UTR
GGGCATTGATGCTGTGACAA+GGG 0.561217 1_2:-28252168 Msa0065670:CDS
ACCGCAGCCAGTGGAAACAC+GGG 0.564302 1_2:-28253010 Msa0065670:CDS
CGGATCATATTCCCCGGGTG+AGG 0.570070 1_2:+28255515 None:intergenic
ACAGCTGCCAAAAGTGGAGG+TGG 0.572452 1_2:-28253126 Msa0065670:CDS
CCTTATAATTAGGGCTATCG+GGG 0.576502 1_2:-28253953 Msa0065670:CDS
GAACAATGTCCAGAAAGTGC+TGG 0.577732 1_2:-28252012 Msa0065670:CDS
AGCCTATCCATATATTGCAC+AGG 0.579392 1_2:-28253878 Msa0065670:intron
TGCCAAAAGTGGAGGTGGAG+AGG 0.579882 1_2:-28253121 Msa0065670:CDS
GGAGTGCGGATCATATTCCC+CGG 0.581565 1_2:+28255509 None:intergenic
CTTACAACAGAATGGATTGA+CGG 0.585861 1_2:-28256397 Msa0065670:five_prime_UTR
TATACCCACCATAACTGAAG+AGG 0.586389 1_2:-28252048 Msa0065670:CDS
ATTACAGCTGCCAAAAGTGG+AGG 0.587817 1_2:-28253129 Msa0065670:CDS
GATCTAAATTGACTCCATCT+GGG 0.588365 1_2:+28254115 None:intergenic
GTAAAGCACTCCTTAGCCGA+GGG 0.589316 1_2:+28253229 None:intergenic
GGCTTAAAGCGTCCAATGGT+AGG 0.593364 1_2:+28252080 None:intergenic
CCAGGCTTTAGAAGGTGGAG+GGG 0.593525 1_2:-28254061 Msa0065670:CDS
AGCACTTTAGCAGAGATGCC+CGG 0.594680 1_2:+28251756 None:intergenic
ATGGTGGGTATAAGAGCTGC+GGG 0.595967 1_2:+28252059 None:intergenic
GATTGACTGCAGATTGTCAA+GGG 0.597608 1_2:-28252188 Msa0065670:intron
AGGGCATTGATGCTGTGACA+AGG 0.597768 1_2:-28252169 Msa0065670:CDS
GCTATAATGATTAATGAACA+AGG 0.600527 1_2:+28251562 None:intergenic
TATCCTAAAAGGATAATCAA+AGG 0.601605 1_2:+28253990 None:intergenic
CCGGCAAGAGATATTCTGAC+CGG 0.601734 1_2:+28253058 None:intergenic
ATCTCAACAACCGCAGCCAG+TGG 0.604477 1_2:-28253019 Msa0065670:CDS
TACCTGTGCAATATATGGAT+AGG 0.609388 1_2:+28253876 None:intergenic
TGGATAGGCTTCATCAACAA+TGG 0.610971 1_2:+28253891 None:intergenic
TGCGGGCTTAAAGCGTCCAA+TGG 0.612041 1_2:+28252076 None:intergenic
CTATGGCTGGATAATCCCGA+TGG 0.613934 1_2:+28254166 None:intergenic
TGATTGACTGCAGATTGTCA+AGG 0.617529 1_2:-28252189 Msa0065670:intron
TATCTTGCCAGTGCTTGCAA+AGG 0.619857 1_2:-28254091 Msa0065670:CDS
CAAATATACACAATTGTGGG+TGG 0.628614 1_2:+28251639 None:intergenic
ATATCCCGATTTGACTACCA+TGG 0.630705 1_2:-28256561 Msa0065670:five_prime_UTR
TATGGTGGGTATAAGAGCTG+CGG 0.631457 1_2:+28252058 None:intergenic
CTTACAGCAAGTATACATCA+AGG 0.633014 1_2:-28256426 Msa0065670:five_prime_UTR
CGTAAAGCACTCCTTAGCCG+AGG 0.633199 1_2:+28253228 None:intergenic
GTTGTTGAGATGTTACAGAC+TGG 0.636049 1_2:+28253031 None:intergenic
AGAAGTTCTTGGATAATCTG+AGG 0.636314 1_2:+28251789 None:intergenic
GAGTGCGGATCATATTCCCC+GGG 0.640776 1_2:+28255510 None:intergenic
CTATAATGATTAATGAACAA+GGG 0.644603 1_2:+28251563 None:intergenic
TCTTGACGGATGAATCCCCT+CGG 0.651670 1_2:-28253245 Msa0065670:CDS
AGCTGTAATAAAATTCTCGA+AGG 0.654599 1_2:+28253143 None:intergenic
CAGCAAGTATACATCAAGGA+GGG 0.655370 1_2:-28256422 Msa0065670:five_prime_UTR
ATTATAAGGGCAAAGTATGG+GGG 0.655388 1_2:+28253967 None:intergenic
TTCATGCTGATCCTCACCCG+GGG 0.678599 1_2:-28255526 Msa0065670:five_prime_UTR
ACAGCAAGTATACATCAAGG+AGG 0.696808 1_2:-28256423 Msa0065670:five_prime_UTR
TAAAGCACTCCTTAGCCGAG+GGG 0.715422 1_2:+28253230 None:intergenic
AGATGATTAACATTAAACCA+TGG 0.726572 1_2:+28256544 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATTTTTATAATTATTATAA+TGG + chr1_2:28251559-28251578 None:intergenic 0.0%
!!! AAATTTTTTTTTTTAGTGTA+GGG - chr1_2:28252418-28252437 Msa0065670:intron 10.0%
!!! GATTTTTTATTTATGAAAAT+AGG - chr1_2:28253219-28253238 Msa0065670:CDS 10.0%
!!! ATCCATATTTTTTAATTTTA+CGG + chr1_2:28253401-28253420 None:intergenic 10.0%
!!! AATAATAAATTACCTGTTTT+AGG + chr1_2:28251760-28251779 None:intergenic 15.0%
!!! AAAATAATTTTGACAAATTC+AGG - chr1_2:28252357-28252376 Msa0065670:intron 15.0%
!!! AAATAATTTTGACAAATTCA+GGG - chr1_2:28252358-28252377 Msa0065670:intron 15.0%
!!! GAAATTTTTTTTTTTAGTGT+AGG - chr1_2:28252417-28252436 Msa0065670:intron 15.0%
!! TACCGTAAAATTAAAAAATA+TGG - chr1_2:28253396-28253415 Msa0065670:intron 15.0%
!! TATACATTGTAAAACAAAAT+TGG - chr1_2:28253453-28253472 Msa0065670:intron 15.0%
!! AAAATGAAGTTAAAAGAAAA+CGG + chr1_2:28253556-28253575 None:intergenic 15.0%
!! AAAAACTTATAACTATGATA+TGG + chr1_2:28253601-28253620 None:intergenic 15.0%
!!! AAATGGTTACTATTAAATTT+TGG - chr1_2:28254571-28254590 Msa0065670:intron 15.0%
!! AGTATAATAACTAAATTACT+TGG + chr1_2:28255200-28255219 None:intergenic 15.0%
!! TAGTATAAAAATATGATTGT+AGG + chr1_2:28255336-28255355 None:intergenic 15.0%
!!! TTGATTATTTTAGCTTAATA+AGG - chr1_2:28256199-28256218 Msa0065670:intron 15.0%
!! ATTATAAAAATTGTCATGAG+AGG - chr1_2:28251567-28251586 Msa0065670:three_prime_UTR 20.0%
!!! ATTATTTTAATGCTTTCATC+TGG - chr1_2:28251774-28251793 Msa0065670:CDS 20.0%
!! ATTTCAATTTATACAGCTTA+GGG - chr1_2:28251853-28251872 Msa0065670:intron 20.0%
!!! TACATAAATTTTTGAAACAC+AGG + chr1_2:28251948-28251967 None:intergenic 20.0%
!! TGTGTTTCAAAAATTTATGT+AGG - chr1_2:28251947-28251966 Msa0065670:intron 20.0%
!! AATACTAATGATTATACAAC+AGG + chr1_2:28251987-28252006 None:intergenic 20.0%
!! ATAATCTATCTAAATTACCA+GGG + chr1_2:28252117-28252136 None:intergenic 20.0%
!! TATAATCTATCTAAATTACC+AGG + chr1_2:28252118-28252137 None:intergenic 20.0%
!! AAATGTCTCTAAATAAGTAA+TGG + chr1_2:28252148-28252167 None:intergenic 20.0%
!! GTTTATAAAGAATTTACTCA+AGG + chr1_2:28252462-28252481 None:intergenic 20.0%
!!! AATTTCATAATGTCTTATTG+AGG + chr1_2:28252719-28252738 None:intergenic 20.0%
!!! TTCTGGTATTTAAAATCTAA+TGG + chr1_2:28253007-28253026 None:intergenic 20.0%
!!! AATTTCTTTTTTACTTGCAA+AGG + chr1_2:28253196-28253215 None:intergenic 20.0%
!!! TTAATTTTACGGTAAATATC+TGG + chr1_2:28253390-28253409 None:intergenic 20.0%
!! TAAAAGAACTTAAACATTAG+TGG + chr1_2:28253762-28253781 None:intergenic 20.0%
!! CATCATTTATCATAATGATT+AGG + chr1_2:28253794-28253813 None:intergenic 20.0%
!! CTAATCATTATGATAAATGA+TGG - chr1_2:28253792-28253811 Msa0065670:intron 20.0%
!! TTCATCAATTTCAAAAACAT+TGG + chr1_2:28254346-28254365 None:intergenic 20.0%
!!! TGATGTAGATATAACAATTT+TGG - chr1_2:28254532-28254551 Msa0065670:intron 20.0%
!!! AATTTTCCGATAAAGAATTT+TGG + chr1_2:28254634-28254653 None:intergenic 20.0%
!!! TTTTATACTAATTACAACAG+AGG - chr1_2:28255346-28255365 Msa0065670:intron 20.0%
!!! AAAGTCGTATATAATTTTTG+TGG - chr1_2:28255540-28255559 Msa0065670:five_prime_UTR 20.0%
!! CTAAAATTGAATAAATCAGT+TGG - chr1_2:28255592-28255611 Msa0065670:intron 20.0%
!! TATTTATATATACTGGTATG+TGG + chr1_2:28256467-28256486 None:intergenic 20.0%
!! CTATAATGATTAATGAACAA+GGG + chr1_2:28256505-28256524 None:intergenic 20.0%
! AGATGATTAACATTAAACCA+TGG + chr1_2:28251524-28251543 None:intergenic 25.0%
! CATTTCAATTTATACAGCTT+AGG - chr1_2:28251852-28251871 Msa0065670:intron 25.0%
! AAAAGTTAACAATCCATTGT+CGG + chr1_2:28252039-28252058 None:intergenic 25.0%
!! CAAGAAATATTATCTAGTTC+AGG + chr1_2:28252808-28252827 None:intergenic 25.0%
! CTGAACTAGATAATATTTCT+TGG - chr1_2:28252806-28252825 Msa0065670:intron 25.0%
! GAATGTTATAATGTTTGAAC+TGG - chr1_2:28253035-28253054 Msa0065670:CDS 25.0%
! CTTGAAAGATTCTTTGTATA+TGG - chr1_2:28253105-28253124 Msa0065670:CDS 25.0%
! TTCTTATTCTTCATAAAGCA+TGG - chr1_2:28253140-28253159 Msa0065670:CDS 25.0%
! TCTTATTCTTCATAAAGCAT+GGG - chr1_2:28253141-28253160 Msa0065670:CDS 25.0%
!! AAAACAAAATTGGTTTCAGT+AGG - chr1_2:28253463-28253482 Msa0065670:intron 25.0%
!! TTTTAAATGAACCACAAATC+AGG + chr1_2:28253505-28253524 None:intergenic 25.0%
! ACACTTGTCTTAATGTTTAA+AGG + chr1_2:28253653-28253672 None:intergenic 25.0%
!!! TGTTTTGTTATTTGCAATTG+TGG - chr1_2:28253672-28253691 Msa0065670:intron 25.0%
!!! AATTAAGTTGATCAAGACAA+AGG + chr1_2:28253724-28253743 None:intergenic 25.0%
! TATCATAATGATTAGGATAG+TGG + chr1_2:28253787-28253806 None:intergenic 25.0%
!! TTACCTTTGATTATCCTTTT+AGG - chr1_2:28254072-28254091 Msa0065670:CDS 25.0%
! TATCCTAAAAGGATAATCAA+AGG + chr1_2:28254078-28254097 None:intergenic 25.0%
! TAATTATAAGGGCAAAGTAT+GGG + chr1_2:28254103-28254122 None:intergenic 25.0%
! ATACTTTGCCCTTATAATTA+GGG - chr1_2:28254103-28254122 Msa0065670:CDS 25.0%
! AATTATACCTGTGCAATATA+TGG + chr1_2:28254197-28254216 None:intergenic 25.0%
! TACAGAAAAAATTAAGCCAA+TGG - chr1_2:28254429-28254448 Msa0065670:intron 25.0%
! ACAGAAAAAATTAAGCCAAT+GGG - chr1_2:28254430-28254449 Msa0065670:intron 25.0%
!! TAGATATAACAATTTTGGAC+CGG - chr1_2:28254537-28254556 Msa0065670:intron 25.0%
!!! AGTCTTAGACTTTAGTTTTA+TGG - chr1_2:28254602-28254621 Msa0065670:intron 25.0%
! AGTACACCAAAATTCTTTAT+CGG - chr1_2:28254625-28254644 Msa0065670:intron 25.0%
! TTCACAACTAATATTCATGA+CGG - chr1_2:28254654-28254673 Msa0065670:intron 25.0%
! CTTTACGTTACACTATATAT+GGG - chr1_2:28254853-28254872 Msa0065670:intron 25.0%
!!! TTTTTTCCGAGAATTTCTTT+TGG - chr1_2:28255112-28255131 Msa0065670:intron 25.0%
! CAATAAAGTAAAAGAAGTCA+AGG + chr1_2:28255256-28255275 None:intergenic 25.0%
!! ATTGTCGAAGTTTTCAAATT+TGG - chr1_2:28255310-28255329 Msa0065670:intron 25.0%
!! GTTGGTAAAATTAACTGAAA+AGG - chr1_2:28255610-28255629 Msa0065670:intron 25.0%
!! TAACTGAAAAGGTTTGTTTA+TGG - chr1_2:28255621-28255640 Msa0065670:intron 25.0%
! TTATTTGTCTATTTGTCTGT+GGG - chr1_2:28256232-28256251 Msa0065670:intron 25.0%
! TGTCAAATATACACAATTGT+GGG + chr1_2:28256432-28256451 None:intergenic 25.0%
! ATTGTGTATATTTGACAGAA+TGG - chr1_2:28256435-28256454 Msa0065670:five_prime_UTR 25.0%
! GCTATAATGATTAATGAACA+AGG + chr1_2:28256506-28256525 None:intergenic 25.0%
TTAAACCATGGTAGTCAAAT+CGG + chr1_2:28251512-28251531 None:intergenic 30.0%
TCTTATCACAGTTCAATTTC+AGG - chr1_2:28251601-28251620 Msa0065670:three_prime_UTR 30.0%
!!! AAAAGTGTTTTTACCGACAA+TGG - chr1_2:28252023-28252042 Msa0065670:CDS 30.0%
!!! GACAATGGATTGTTAACTTT+TGG - chr1_2:28252038-28252057 Msa0065670:CDS 30.0%
ATTAAAGATGTCAAGGATAG+TGG + chr1_2:28252085-28252104 None:intergenic 30.0%
GTGAAACATTAAAGATGTCA+AGG + chr1_2:28252092-28252111 None:intergenic 30.0%
TGATATTGTTTAGACTGGAA+AGG - chr1_2:28252234-28252253 Msa0065670:intron 30.0%
!!! TACAATTGTTTTGGGTTCAA+TGG - chr1_2:28252387-28252406 Msa0065670:intron 30.0%
!!! ACAATTGTTTTGGGTTCAAT+GGG - chr1_2:28252388-28252407 Msa0065670:intron 30.0%
AAACTTGCAATACTTGACTT+TGG - chr1_2:28252586-28252605 Msa0065670:intron 30.0%
ATAACATTCATTGCAAGTTC+TGG + chr1_2:28253024-28253043 None:intergenic 30.0%
TTTGTATATGGTATAAGCGT+AGG - chr1_2:28253117-28253136 Msa0065670:CDS 30.0%
! AAATTGGTTTCAGTAGGAAA+TGG - chr1_2:28253469-28253488 Msa0065670:intron 30.0%
! GTGAAATTTAACCTGATTTG+TGG - chr1_2:28253491-28253510 Msa0065670:intron 30.0%
!!! AACTTCATTTTTTCTCCTTC+AGG - chr1_2:28253565-28253584 Msa0065670:intron 30.0%
!! AGTTTTTCTTTGCTTTTGCA+TGG - chr1_2:28253614-28253633 Msa0065670:intron 30.0%
!!! TCAACTTAATTGCTTTTTCC+TGG - chr1_2:28253733-28253752 Msa0065670:intron 30.0%
TTTAACGAAGTCTTTCACTA+TGG + chr1_2:28253919-28253938 None:intergenic 30.0%
AATTATAAGGGCAAAGTATG+GGG + chr1_2:28254102-28254121 None:intergenic 30.0%
CTAATTATAAGGGCAAAGTA+TGG + chr1_2:28254104-28254123 None:intergenic 30.0%
CATACTTTGCCCTTATAATT+AGG - chr1_2:28254102-28254121 Msa0065670:CDS 30.0%
! GATGTCTAAGTTTTACTTGA+AGG - chr1_2:28254308-28254327 Msa0065670:intron 30.0%
!!! TAGACAGAATTTTTTCCCAT+TGG + chr1_2:28254448-28254467 None:intergenic 30.0%
AAAAAATTCTGTCTAGTGTC+TGG - chr1_2:28254453-28254472 Msa0065670:intron 30.0%
TCTAGTGTCTGGAAATAAAA+GGG - chr1_2:28254464-28254483 Msa0065670:intron 30.0%
!!! ATATTCATGACGGATTTTGA+TGG - chr1_2:28254664-28254683 Msa0065670:intron 30.0%
GCTTTACGTTACACTATATA+TGG - chr1_2:28254852-28254871 Msa0065670:intron 30.0%
TACACTATATATGGGAAATC+TGG - chr1_2:28254861-28254880 Msa0065670:intron 30.0%
AGCTGTAATAAAATTCTCGA+AGG + chr1_2:28254925-28254944 None:intergenic 30.0%
AGTTAAATCTGAACAAGGTA+TGG - chr1_2:28255449-28255468 Msa0065670:intron 30.0%
! TTTTGTGGTAAAATTCCACA+TGG - chr1_2:28255555-28255574 Msa0065670:intron 30.0%
ATGACTCCAAAAACAGTTTA+TGG + chr1_2:28255705-28255724 None:intergenic 30.0%
GTAAGAATTATGTCCTTACT+AGG - chr1_2:28255928-28255947 Msa0065670:intron 30.0%
AACTTTATCCTCTTCAGTTA+TGG + chr1_2:28256028-28256047 None:intergenic 30.0%
CTTATTTGTCTATTTGTCTG+TGG - chr1_2:28256231-28256250 Msa0065670:intron 30.0%
TTCTTAGCAGATTATCTTCT+CGG - chr1_2:28256340-28256359 Msa0065670:five_prime_UTR 30.0%
CTGTCAAATATACACAATTG+TGG + chr1_2:28256433-28256452 None:intergenic 30.0%
GATTAATGAACAAGGGTAAA+TGG + chr1_2:28256498-28256517 None:intergenic 30.0%
TAAACCATGGTAGTCAAATC+GGG + chr1_2:28251511-28251530 None:intergenic 35.0%
!! GTATACTTGCTGTAAGTTCT+TGG + chr1_2:28251635-28251654 None:intergenic 35.0%
CTTACAGCAAGTATACATCA+AGG - chr1_2:28251639-28251658 Msa0065670:three_prime_UTR 35.0%
!! CTTACAACAGAATGGATTGA+CGG - chr1_2:28251668-28251687 Msa0065670:three_prime_UTR 35.0%
GTCGGAGAATTAGTTAATGT+TGG - chr1_2:28251722-28251741 Msa0065670:CDS 35.0%
TCTTTAATGTTTCACTTCCC+TGG - chr1_2:28252097-28252116 Msa0065670:CDS 35.0%
CTCTAAATAAGTAATGGCAG+AGG + chr1_2:28252142-28252161 None:intergenic 35.0%
!! GTGATAATTGATAGCGTATG+TGG - chr1_2:28252210-28252229 Msa0065670:intron 35.0%
GTGGATGATATTGTTTAGAC+TGG - chr1_2:28252229-28252248 Msa0065670:intron 35.0%
TTGTTTAGACTGGAAAGGAT+TGG - chr1_2:28252239-28252258 Msa0065670:intron 35.0%
TATTTGGGTCCTCTAAATTC+AGG - chr1_2:28252303-28252322 Msa0065670:intron 35.0%
ATTTGGGTCCTCTAAATTCA+GGG - chr1_2:28252304-28252323 Msa0065670:intron 35.0%
! GGCTCGATTACAATTGTTTT+GGG - chr1_2:28252379-28252398 Msa0065670:intron 35.0%
TTATTTCAGCTGCTTGATAC+TGG - chr1_2:28252511-28252530 Msa0065670:intron 35.0%
! AGTATTGCAAGTTTTCCATC+AGG + chr1_2:28252580-28252599 None:intergenic 35.0%
TTGCAATACTTGACTTTGGT+AGG - chr1_2:28252590-28252609 Msa0065670:intron 35.0%
GCACACATTTGAATCAAACA+AGG + chr1_2:28252650-28252669 None:intergenic 35.0%
TTGATTCAAATGTGTGCATG+AGG - chr1_2:28252653-28252672 Msa0065670:intron 35.0%
TGATTCAAATGTGTGCATGA+GGG - chr1_2:28252654-28252673 Msa0065670:intron 35.0%
!! AAGACTTCGTGTGTTTTGTT+TGG - chr1_2:28252774-28252793 Msa0065670:intron 35.0%
TGTGGCTAGATATTGTTCAT+CGG - chr1_2:28253690-28253709 Msa0065670:intron 35.0%
!! GAAATCTTTTGTTGTACCCA+GGG - chr1_2:28253814-28253833 Msa0065670:intron 35.0%
! TCAATTTTGTAACAAGCCCT+GGG + chr1_2:28253833-28253852 None:intergenic 35.0%
! CATTCCATACTTTTGATCGT+CGG + chr1_2:28253856-28253875 None:intergenic 35.0%
GTGAAAGACTTCGTTAAACT+TGG - chr1_2:28253921-28253940 Msa0065670:CDS 35.0%
! GATCTAAATTGACTCCATCT+GGG + chr1_2:28253953-28253972 None:intergenic 35.0%
GGCAAAAAACATCAACTTTC+AGG - chr1_2:28254025-28254044 Msa0065670:CDS 35.0%
ATTATAAGGGCAAAGTATGG+GGG + chr1_2:28254101-28254120 None:intergenic 35.0%
TCATCAACAATGGCAAAATC+AGG + chr1_2:28254167-28254186 None:intergenic 35.0%
TACCTGTGCAATATATGGAT+AGG + chr1_2:28254192-28254211 None:intergenic 35.0%
!! ACTGGCTTATAGCTTTAACT+TGG - chr1_2:28254270-28254289 Msa0065670:intron 35.0%
GTCTAGTGTCTGGAAATAAA+AGG - chr1_2:28254463-28254482 Msa0065670:intron 35.0%
CTAGTGTCTGGAAATAAAAG+GGG - chr1_2:28254465-28254484 Msa0065670:intron 35.0%
TAGTGTCTGGAAATAAAAGG+GGG - chr1_2:28254466-28254485 Msa0065670:intron 35.0%
TTACTGATAGAGACTCTTGA+CGG - chr1_2:28254806-28254825 Msa0065670:intron 35.0%
TTTATTACAGCTGCCAAAAG+TGG - chr1_2:28254933-28254952 Msa0065670:intron 35.0%
ATCAGACAGCAAAAATGCTA+GGG + chr1_2:28255084-28255103 None:intergenic 35.0%
TATCAGACAGCAAAAATGCT+AGG + chr1_2:28255085-28255104 None:intergenic 35.0%
!! AGCATTTTTGCTGTCTGATA+AGG - chr1_2:28255085-28255104 Msa0065670:intron 35.0%
!! GCATTTTTGCTGTCTGATAA+GGG - chr1_2:28255086-28255105 Msa0065670:intron 35.0%
!! CATTTTTGCTGTCTGATAAG+GGG - chr1_2:28255087-28255106 Msa0065670:intron 35.0%
AGCGTAGTTAAATCTGAACA+AGG - chr1_2:28255444-28255463 Msa0065670:intron 35.0%
! CAAGGTACAATGTTACTTCT+GGG - chr1_2:28255511-28255530 Msa0065670:exon 35.0%
AAACAAAACTTAAGCGCCAT+AGG + chr1_2:28255661-28255680 None:intergenic 35.0%
! TAGCCACCATAAACTGTTTT+TGG - chr1_2:28255696-28255715 Msa0065670:intron 35.0%
ACTCCAAAAACAGTTTATGG+TGG + chr1_2:28255702-28255721 None:intergenic 35.0%
TAGGTACCATACCGAAAATA+GGG + chr1_2:28255969-28255988 None:intergenic 35.0%
TTATCCTCTTCAGTTATGGT+GGG + chr1_2:28256024-28256043 None:intergenic 35.0%
TTTATCCTCTTCAGTTATGG+TGG + chr1_2:28256025-28256044 None:intergenic 35.0%
AGAAGTTCTTGGATAATCTG+AGG + chr1_2:28256279-28256298 None:intergenic 35.0%
GATAATCTGCTAAGAACATC+AGG + chr1_2:28256336-28256355 None:intergenic 35.0%
TCTTAGCAGATTATCTTCTC+GGG - chr1_2:28256341-28256360 Msa0065670:five_prime_UTR 35.0%
CAAATATACACAATTGTGGG+TGG + chr1_2:28256429-28256448 None:intergenic 35.0%
! ATATCCCGATTTGACTACCA+TGG - chr1_2:28251504-28251523 Msa0065670:three_prime_UTR 40.0%
ACAGCAAGTATACATCAAGG+AGG - chr1_2:28251642-28251661 Msa0065670:three_prime_UTR 40.0%
CAGCAAGTATACATCAAGGA+GGG - chr1_2:28251643-28251662 Msa0065670:three_prime_UTR 40.0%
CAGAGCAAAGAAAGCAATGT+CGG - chr1_2:28251704-28251723 Msa0065670:CDS 40.0%
AGTCATCTGCTACCTAAAAC+AGG - chr1_2:28251745-28251764 Msa0065670:CDS 40.0%
AGATGTAGCTTAAAGCTCAC+AGG + chr1_2:28251818-28251837 None:intergenic 40.0%
!! AGGATAGTGGAACATTAGTG+AGG + chr1_2:28252072-28252091 None:intergenic 40.0%
TTAGACTGGAAAGGATTGGA+AGG - chr1_2:28252243-28252262 Msa0065670:intron 40.0%
AATCCAGTCCCTGAATTTAG+AGG + chr1_2:28252315-28252334 None:intergenic 40.0%
! GGGCTCGATTACAATTGTTT+TGG - chr1_2:28252378-28252397 Msa0065670:intron 40.0%
! CGAAGTCTTTTTCTACTTCG+TGG + chr1_2:28252763-28252782 None:intergenic 40.0%
TATGGCTGTCATATTCCTGA+AGG + chr1_2:28253583-28253602 None:intergenic 40.0%
!! TTGCTTTTGCATGGCGATTT+TGG - chr1_2:28253623-28253642 Msa0065670:intron 40.0%
CTTAAACATTAGTGGCATCC+AGG + chr1_2:28253754-28253773 None:intergenic 40.0%
!! GGAAATCTTTTGTTGTACCC+AGG - chr1_2:28253813-28253832 Msa0065670:intron 40.0%
! GTCAATTTTGTAACAAGCCC+TGG + chr1_2:28253834-28253853 None:intergenic 40.0%
TTGACCGACGATCAAAAGTA+TGG - chr1_2:28253849-28253868 Msa0065670:intron 40.0%
CAATTGCTCATCTCATCCAT+CGG - chr1_2:28253883-28253902 Msa0065670:CDS 40.0%
AATTGCTCATCTCATCCATC+GGG - chr1_2:28253884-28253903 Msa0065670:CDS 40.0%
AAACTTGGTTTCATCCCAGA+TGG - chr1_2:28253936-28253955 Msa0065670:CDS 40.0%
! GGATCTAAATTGACTCCATC+TGG + chr1_2:28253954-28253973 None:intergenic 40.0%
AAACATCAACTTTCAGGAGC+TGG - chr1_2:28254031-28254050 Msa0065670:CDS 40.0%
!! AAGTATGGGGGTATCCTAAA+AGG + chr1_2:28254089-28254108 None:intergenic 40.0%
GCCCTTATAATTAGGGCTAT+CGG - chr1_2:28254110-28254129 Msa0065670:CDS 40.0%
CCCGATAGCCCTAATTATAA+GGG + chr1_2:28254114-28254133 None:intergenic 40.0%
CCCTTATAATTAGGGCTATC+GGG - chr1_2:28254111-28254130 Msa0065670:CDS 40.0%
CCTTATAATTAGGGCTATCG+GGG - chr1_2:28254112-28254131 Msa0065670:CDS 40.0%
!! TTGGAAGGGATAGCTTTAGT+AGG - chr1_2:28254137-28254156 Msa0065670:CDS 40.0%
TGGATAGGCTTCATCAACAA+TGG + chr1_2:28254177-28254196 None:intergenic 40.0%
AGCCTATCCATATATTGCAC+AGG - chr1_2:28254187-28254206 Msa0065670:CDS 40.0%
TGCACAGGTATAATTGTCTC+TGG - chr1_2:28254202-28254221 Msa0065670:CDS 40.0%
CTTTCAAGCACTTCTTGTTC+AGG + chr1_2:28254369-28254388 None:intergenic 40.0%
GATGTAATTGGATGCCTTCA+AGG - chr1_2:28254494-28254513 Msa0065670:intron 40.0%
GCACAAGAAAATTTGCAGTG+TGG + chr1_2:28254735-28254754 None:intergenic 40.0%
AGCTTGGGCTTATTACTAAC+CGG - chr1_2:28254988-28255007 Msa0065670:intron 40.0%
GTTGTTGAGATGTTACAGAC+TGG + chr1_2:28255037-28255056 None:intergenic 40.0%
CCTCGTCCAAAAGAAATTCT+CGG + chr1_2:28255121-28255140 None:intergenic 40.0%
TAAAAGAAGTCAAGGACGAG+AGG + chr1_2:28255248-28255267 None:intergenic 40.0%
GATCCAAGAAAAATTCGCCA+AGG - chr1_2:28255493-28255512 Msa0065670:CDS 40.0%
! GTACCTTGGCGAATTTTTCT+TGG + chr1_2:28255499-28255518 None:intergenic 40.0%
CCAGAAGTAACATTGTACCT+TGG + chr1_2:28255513-28255532 None:intergenic 40.0%
! CCAAGGTACAATGTTACTTC+TGG - chr1_2:28255510-28255529 Msa0065670:exon 40.0%
TGTGGTAAAATTCCACATGG+TGG - chr1_2:28255558-28255577 Msa0065670:intron 40.0%
GTTTACTACGAATGAGCGTA+TGG - chr1_2:28255745-28255764 Msa0065670:intron 40.0%
TGATTGACTGCAGATTGTCA+AGG - chr1_2:28255876-28255895 Msa0065670:intron 40.0%
GATTGACTGCAGATTGTCAA+GGG - chr1_2:28255877-28255896 Msa0065670:intron 40.0%
TGCATTCTGAACTCCTAGTA+AGG + chr1_2:28255944-28255963 None:intergenic 40.0%
! CAGAATGCAAGCCCTATTTT+CGG - chr1_2:28255955-28255974 Msa0065670:intron 40.0%
GTAGGTACCATACCGAAAAT+AGG + chr1_2:28255970-28255989 None:intergenic 40.0%
TATACCCACCATAACTGAAG+AGG - chr1_2:28256017-28256036 Msa0065670:intron 40.0%
TTTGTCTATTTGTCTGTGGG+TGG - chr1_2:28256235-28256254 Msa0065670:intron 40.0%
!! TGTGGGTGGATTAAGCATTA+AGG + chr1_2:28256415-28256434 None:intergenic 40.0%
GGAGGGTTCTTACAACAGAA+TGG - chr1_2:28251660-28251679 Msa0065670:three_prime_UTR 45.0%
! TTTTCATGCTGATCCTCACC+CGG - chr1_2:28252537-28252556 Msa0065670:intron 45.0%
AATATGATCCGCACTCCTGA+TGG - chr1_2:28252562-28252581 Msa0065670:intron 45.0%
! CAAGTTTTCCATCAGGAGTG+CGG + chr1_2:28252573-28252592 None:intergenic 45.0%
ACGAAGTCTTTCACTATGGC+TGG + chr1_2:28253915-28253934 None:intergenic 45.0%
!! TTTGCAAGCACTGGCAAGAT+AGG + chr1_2:28253975-28253994 None:intergenic 45.0%
TATCTTGCCAGTGCTTGCAA+AGG - chr1_2:28253974-28253993 Msa0065670:CDS 45.0%
TCAAAGACCTTTGCAAGCAC+TGG + chr1_2:28253984-28254003 None:intergenic 45.0%
!! GTCTTTGACCAGGCTTTAGA+AGG - chr1_2:28253996-28254015 Msa0065670:CDS 45.0%
!! TTTGACCAGGCTTTAGAAGG+TGG - chr1_2:28253999-28254018 Msa0065670:CDS 45.0%
CCCCGATAGCCCTAATTATA+AGG + chr1_2:28254115-28254134 None:intergenic 45.0%
! AATTAGGGCTATCGGGGTTT+TGG - chr1_2:28254118-28254137 Msa0065670:CDS 45.0%
CAGTTCTTGACAATGACAGG+GGG + chr1_2:28254254-28254273 None:intergenic 45.0%
CCAGTTCTTGACAATGACAG+GGG + chr1_2:28254255-28254274 None:intergenic 45.0%
GCCAGTTCTTGACAATGACA+GGG + chr1_2:28254256-28254275 None:intergenic 45.0%
AGCCAGTTCTTGACAATGAC+AGG + chr1_2:28254257-28254276 None:intergenic 45.0%
AAGGGGGACATCGATGTAAT+TGG - chr1_2:28254482-28254501 Msa0065670:intron 45.0%
TGGATGCCTTCAAGGTTTAG+AGG - chr1_2:28254502-28254521 Msa0065670:intron 45.0%
ATGCCTTCAAGGTTTAGAGG+AGG - chr1_2:28254505-28254524 Msa0065670:intron 45.0%
TGCCTTCAAGGTTTAGAGGA+GGG - chr1_2:28254506-28254525 Msa0065670:intron 45.0%
ATCCCTCCTCTAAACCTTGA+AGG + chr1_2:28254511-28254530 None:intergenic 45.0%
! ACAATTTTGGACCGGATGCA+CGG - chr1_2:28254545-28254564 Msa0065670:intron 45.0%
ATTACAGCTGCCAAAAGTGG+AGG - chr1_2:28254936-28254955 Msa0065670:intron 45.0%
AGAGGATCTGAAAGGGAGTA+TGG - chr1_2:28254962-28254981 Msa0065670:intron 45.0%
GATGTTACAGACTGGAATCC+CGG + chr1_2:28255029-28255048 None:intergenic 45.0%
! CCGAGAATTTCTTTTGGACG+AGG - chr1_2:28255118-28255137 Msa0065670:intron 45.0%
GCAAAAGTAATGCCACCATG+TGG + chr1_2:28255573-28255592 None:intergenic 45.0%
TGCTGTGACAAGGGAACAAA+TGG - chr1_2:28255906-28255925 Msa0065670:intron 45.0%
! TGCAAGCCCTATTTTCGGTA+TGG - chr1_2:28255960-28255979 Msa0065670:intron 45.0%
TTCGGTATGGTACCTACCAT+TGG - chr1_2:28255973-28255992 Msa0065670:intron 45.0%
!! TATGGTGGGTATAAGAGCTG+CGG + chr1_2:28256010-28256029 None:intergenic 45.0%
! GAACAATGTCCAGAAAGTGC+TGG - chr1_2:28256053-28256072 Msa0065670:intron 45.0%
TCAAGAACTCCAGCACTTTC+TGG + chr1_2:28256065-28256084 None:intergenic 45.0%
TCTGTCAAGCACATCTAGTC+AGG - chr1_2:28256098-28256117 Msa0065670:intron 45.0%
TGAGGAACATTGAGAGCCTA+AGG + chr1_2:28256261-28256280 None:intergenic 45.0%
!! ACAAATTATTTAAAAATTTA+GGG + chr1_2:28252284-28252303 None:intergenic 5.0%
!! TACAAATTATTTAAAAATTT+AGG + chr1_2:28252285-28252304 None:intergenic 5.0%
!!! ATTTTTAAATAATTTGTATT+TGG - chr1_2:28252287-28252306 Msa0065670:intron 5.0%
!!! TTTTTAAATAATTTGTATTT+GGG - chr1_2:28252288-28252307 Msa0065670:intron 5.0%
!! AAAATAAAAAAATTAATTCA+AGG + chr1_2:28252488-28252507 None:intergenic 5.0%
!! AAAAAAAAATAAAAGATATA+CGG + chr1_2:28252913-28252932 None:intergenic 5.0%
!!! AAAATTATTTTAAATTTTCT+TGG - chr1_2:28253358-28253377 Msa0065670:intron 5.0%
!! TATATTATATTTATATATAC+TGG + chr1_2:28256474-28256493 None:intergenic 5.0%
GGTCCTCTAAATTCAGGGAC+TGG - chr1_2:28252309-28252328 Msa0065670:intron 50.0%
TTTCATGCTGATCCTCACCC+GGG - chr1_2:28252538-28252557 Msa0065670:intron 50.0%
CTATGGCTGGATAATCCCGA+TGG + chr1_2:28253902-28253921 None:intergenic 50.0%
GCTTGCAAAGGTCTTTGACC+AGG - chr1_2:28253986-28254005 Msa0065670:CDS 50.0%
!! ACCAGGCTTTAGAAGGTGGA+GGG - chr1_2:28254003-28254022 Msa0065670:CDS 50.0%
CCCCTGTCATTGTCAAGAAC+TGG - chr1_2:28254252-28254271 Msa0065670:intron 50.0%
! CAATTTTGGACCGGATGCAC+GGG - chr1_2:28254546-28254565 Msa0065670:intron 50.0%
AACCATTTCTCCCGTGCATC+CGG + chr1_2:28254559-28254578 None:intergenic 50.0%
! TCTTGACGGATGAATCCCCT+CGG - chr1_2:28254820-28254839 Msa0065670:intron 50.0%
! TAAAGCACTCCTTAGCCGAG+GGG + chr1_2:28254838-28254857 None:intergenic 50.0%
! GTAAAGCACTCCTTAGCCGA+GGG + chr1_2:28254839-28254858 None:intergenic 50.0%
! ATCCTCTCCACCTCCACTTT+TGG + chr1_2:28254949-28254968 None:intergenic 50.0%
GAGGTGGAGAGGATCTGAAA+GGG - chr1_2:28254955-28254974 Msa0065670:intron 50.0%
! AAAGGGAGTATGGCTGAGCT+TGG - chr1_2:28254972-28254991 Msa0065670:intron 50.0%
! AAGGGAGTATGGCTGAGCTT+GGG - chr1_2:28254973-28254992 Msa0065670:intron 50.0%
CCGGCAAGAGATATTCTGAC+CGG + chr1_2:28255010-28255029 None:intergenic 50.0%
CCGGTCAGAATATCTCTTGC+CGG - chr1_2:28255007-28255026 Msa0065670:intron 50.0%
CGGTCAGAATATCTCTTGCC+GGG - chr1_2:28255008-28255027 Msa0065670:intron 50.0%
!! AGGGCATTGATGCTGTGACA+AGG - chr1_2:28255896-28255915 Msa0065670:intron 50.0%
!! GGGCATTGATGCTGTGACAA+GGG - chr1_2:28255897-28255916 Msa0065670:intron 50.0%
!! ATGGTGGGTATAAGAGCTGC+GGG + chr1_2:28256009-28256028 None:intergenic 50.0%
ATTTGTCTGTGGGTGGCCTT+AGG - chr1_2:28256242-28256261 Msa0065670:intron 50.0%
GCAACACTGGCAGAAGTTCT+TGG + chr1_2:28256290-28256309 None:intergenic 50.0%
AGAACTTCTGCCAGTGTTGC+CGG - chr1_2:28256290-28256309 Msa0065670:intron 50.0%
AGCACTTTAGCAGAGATGCC+CGG + chr1_2:28256312-28256331 None:intergenic 50.0%
TTCATGCTGATCCTCACCCG+GGG - chr1_2:28252539-28252558 Msa0065670:intron 55.0%
GAGTGCGGATCATATTCCCC+GGG + chr1_2:28252558-28252577 None:intergenic 55.0%
GGAGTGCGGATCATATTCCC+CGG + chr1_2:28252559-28252578 None:intergenic 55.0%
!! GACCAGGCTTTAGAAGGTGG+AGG - chr1_2:28254002-28254021 Msa0065670:CDS 55.0%
!! CCAGGCTTTAGAAGGTGGAG+GGG - chr1_2:28254004-28254023 Msa0065670:CDS 55.0%
!!! AGGGCTATCGGGGTTTTGGA+AGG - chr1_2:28254122-28254141 Msa0065670:CDS 55.0%
!!! GGGCTATCGGGGTTTTGGAA+GGG - chr1_2:28254123-28254142 Msa0065670:CDS 55.0%
! CGTAAAGCACTCCTTAGCCG+AGG + chr1_2:28254840-28254859 None:intergenic 55.0%
ACAGCTGCCAAAAGTGGAGG+TGG - chr1_2:28254939-28254958 Msa0065670:intron 55.0%
TGCCAAAAGTGGAGGTGGAG+AGG - chr1_2:28254944-28254963 Msa0065670:intron 55.0%
GGAGGTGGAGAGGATCTGAA+AGG - chr1_2:28254954-28254973 Msa0065670:intron 55.0%
ATCTCAACAACCGCAGCCAG+TGG - chr1_2:28255046-28255065 Msa0065670:intron 55.0%
AACCGCAGCCAGTGGAAACA+CGG - chr1_2:28255054-28255073 Msa0065670:intron 55.0%
CTTAAGCGCCATAGGCAGCA+TGG + chr1_2:28255653-28255672 None:intergenic 55.0%
GTGCTGGAGTTCTTGACTGC+AGG - chr1_2:28256069-28256088 Msa0065670:intron 55.0%
GAACTTCTGCCAGTGTTGCC+GGG - chr1_2:28256291-28256310 Msa0065670:intron 55.0%
CGGATCATATTCCCCGGGTG+AGG + chr1_2:28252553-28252572 None:intergenic 60.0%
!! CCCCTCCACCTTCTAAAGCC+TGG + chr1_2:28254007-28254026 None:intergenic 60.0%
GACCGGATGCACGGGAGAAA+TGG - chr1_2:28254554-28254573 Msa0065670:intron 60.0%
CGGATGAATCCCCTCGGCTA+AGG - chr1_2:28254826-28254845 Msa0065670:intron 60.0%
ACCGCAGCCAGTGGAAACAC+GGG - chr1_2:28255055-28255074 Msa0065670:intron 60.0%
GGCTACTGCCATGCTGCCTA+TGG - chr1_2:28255642-28255661 Msa0065670:intron 60.0%
! GCCCGTGTTTCCACTGGCTG+CGG + chr1_2:28255059-28255078 None:intergenic 65.0%
AGGGCTGCCCGTGTTTCCAC+TGG + chr1_2:28255065-28255084 None:intergenic 65.0%
GCAGAGATGCCCGGCAACAC+TGG + chr1_2:28256303-28256322 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr1_2 gene 28251497 28256590 28251497 ID=Msa0065670;Name=Msa0065670
chr1_2 mRNA 28251497 28256590 28251497 ID=Msa0065670-mRNA-1;Parent=Msa0065670;Name=Msa0065670-mRNA-1;_AED=0.02;_eAED=0.02;_QI=315|1|1|1|1|1|6|192|368
chr1_2 exon 28251497 28251823 28251497 ID=Msa0065670-mRNA-1:exon:9715;Parent=Msa0065670-mRNA-1
chr1_2 exon 28251968 28252198 28251968 ID=Msa0065670-mRNA-1:exon:9714;Parent=Msa0065670-mRNA-1
chr1_2 exon 28252948 28253271 28252948 ID=Msa0065670-mRNA-1:exon:9713;Parent=Msa0065670-mRNA-1
chr1_2 exon 28253879 28254252 28253879 ID=Msa0065670-mRNA-1:exon:9712;Parent=Msa0065670-mRNA-1
chr1_2 exon 28255480 28255567 28255480 ID=Msa0065670-mRNA-1:exon:9711;Parent=Msa0065670-mRNA-1
chr1_2 exon 28256321 28256590 28256321 ID=Msa0065670-mRNA-1:exon:9710;Parent=Msa0065670-mRNA-1
chr1_2 five_prime_UTR 28256321 28256590 28256321 ID=Msa0065670-mRNA-1:five_prime_utr;Parent=Msa0065670-mRNA-1
chr1_2 five_prime_UTR 28255523 28255567 28255523 ID=Msa0065670-mRNA-1:five_prime_utr;Parent=Msa0065670-mRNA-1
chr1_2 CDS 28255480 28255522 28255480 ID=Msa0065670-mRNA-1:cds;Parent=Msa0065670-mRNA-1
chr1_2 CDS 28253879 28254252 28253879 ID=Msa0065670-mRNA-1:cds;Parent=Msa0065670-mRNA-1
chr1_2 CDS 28252948 28253271 28252948 ID=Msa0065670-mRNA-1:cds;Parent=Msa0065670-mRNA-1
chr1_2 CDS 28251968 28252198 28251968 ID=Msa0065670-mRNA-1:cds;Parent=Msa0065670-mRNA-1
chr1_2 CDS 28251689 28251823 28251689 ID=Msa0065670-mRNA-1:cds;Parent=Msa0065670-mRNA-1
chr1_2 three_prime_UTR 28251497 28251688 28251497 ID=Msa0065670-mRNA-1:three_prime_utr;Parent=Msa0065670-mRNA-1
Gene Sequence

>Msa0065670

ATGATCCGCACTCCTGATGGAAAACTTGCAATACTTGACTTTGGGCTTGTTACAAAATTGACCGACGATCAAAAGTATGGAATGATTGAAGCAATTGCTCATCTCATCCATCGGGATTATCCAGCCATAGTGAAAGACTTCGTTAAACTTGGTTTCATCCCAGATGGAGTCAATTTAGATCCTATCTTGCCAGTGCTTGCAAAGGTCTTTGACCAGGCTTTAGAAGGTGGAGGGGCAAAAAACATCAACTTTCAGGAGCTGGCATCAGATTTAGCACAAATTACCTTTGATTATCCTTTTAGGATACCCCCATACTTTGCCCTTATAATTAGGGCTATCGGGGTTTTGGAAGGGATAGCTTTAGTAGGAAATCCTGATTTTGCCATTGTTGATGAAGCCTATCCATATATTGCACAGAGACTCTTGACGGATGAATCCCCTCGGCTAAGGAGTGCTTTACGTTACACTATATATGGGAAATCTGGAGTTTTCGATGCTGAAAGATTTATTGATGTCATGCAAGCCTTCGAGAATTTTATTACAGCTGCCAAAAGTGGAGGTGGAGAGGATCTGAAAGGGAGTATGGCTGAGCTTGGGCTTATTACTAACCGGTCAGAATATCTCTTGCCGGGATTCCAGTCTGTAACATCTCAACAACCGCAGCCAGTGGAAACACGGGCAGCCCTAGCATTTTTGCTGTCTGATAAGGGGAATTTTTTCCGAGAATTTCTTTTGGACGAGATTGTCAAGGGCATTGATGCTGTGACAAGGGAACAAATGGTAAGAATTATGTCCTTACTAGGAGTTCAGAATGCAAGCCCTATTTTCGGTATGGTACCTACCATTGGACGCTTTAAGCCCGCAGCTCTTATACCCACCATAACTGAAGAGGATAAAGTTATACTGAACAATGTCCAGAAAGTGCTGGAGTTCTTGACTGCAGGAAGCACTCTGTCAAGCACATCTAGTCAGGCTCTCAATGTTCCTCAGATTATCCAAGAACTTCTGCCAGTGTTGCCGGGCATCTCTGCTAAAGTGCTTCCTGATGTTCTTAGCAGATTATCTTCTCGGGTATTAGCGCGATTAATTCGTGATGCATTTTTGTAA

Protein sequence

>Msa0065670

MIRTPDGKLAILDFGLVTKLTDDQKYGMIEAIAHLIHRDYPAIVKDFVKLGFIPDGVNLDPILPVLAKVFDQALEGGGAKNINFQELASDLAQITFDYPFRIPPYFALIIRAIGVLEGIALVGNPDFAIVDEAYPYIAQRLLTDESPRLRSALRYTIYGKSGVFDAERFIDVMQAFENFITAAKSGGGEDLKGSMAELGLITNRSEYLLPGFQSVTSQQPQPVETRAALAFLLSDKGNFFREFLLDEIVKGIDAVTREQMVRIMSLLGVQNASPIFGMVPTIGRFKPAALIPTITEEDKVILNNVQKVLEFLTAGSTLSSTSSQALNVPQIIQELLPVLPGISAKVLPDVLSRLSSRVLARLIRDAFL*