Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1123500 | AES81709.1 | 80.000 | 65 | 13 | 0 | 13 | 77 | 7 | 71 | 4.24e-29 | 108 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1123500 | sp|C7J4U3|OST4A_ORYSJ | 86.486 | 37 | 5 | 0 | 41 | 77 | 1 | 37 | 3.54e-17 | 70.5 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1123500 | G7KZM4 | 80.000 | 65 | 13 | 0 | 13 | 77 | 7 | 71 | 2.03e-29 | 108 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0046740 | Msa1123500 | 0.816269 | 6.032509e-52 | -8.615850e-47 |
| Msa0064350 | Msa1123500 | 0.825048 | 5.797822e-54 | -8.615850e-47 |
| Msa0064380 | Msa1123500 | 0.839734 | 1.327143e-57 | -8.615850e-47 |
| Msa0076040 | Msa1123500 | 0.808181 | 3.514069e-50 | -8.615850e-47 |
| Msa0115990 | Msa1123500 | 0.849137 | 3.921303e-60 | -8.615850e-47 |
| Msa0651050 | Msa1123500 | 0.865557 | 5.417750e-65 | -8.615850e-47 |
| Msa0692840 | Msa1123500 | 0.831587 | 1.534294e-55 | -8.615850e-47 |
| Msa0692940 | Msa1123500 | 0.822662 | 2.100946e-53 | -8.615850e-47 |
| Msa0784200 | Msa1123500 | 0.817085 | 3.959407e-52 | -8.615850e-47 |
| Msa0818310 | Msa1123500 | 0.805146 | 1.537037e-49 | -8.615850e-47 |
| Msa0149190 | Msa1123500 | 0.810560 | 1.084775e-50 | -8.615850e-47 |
| Msa0149200 | Msa1123500 | 0.832919 | 7.180444e-56 | -8.615850e-47 |
| Msa0211840 | Msa1123500 | 0.803240 | 3.831058e-49 | -8.615850e-47 |
| Msa0385250 | Msa1123500 | 0.807411 | 5.120692e-50 | -8.615850e-47 |
| Msa0432210 | Msa1123500 | 0.812739 | 3.643441e-51 | -8.615850e-47 |
| Msa1078270 | Msa1123500 | 0.979530 | 3.593354e-148 | -8.615850e-47 |
| Msa1081990 | Msa1123500 | 0.804081 | 2.562995e-49 | -8.615850e-47 |
| Msa0315170 | Msa1123500 | 0.814008 | 1.916749e-51 | -8.615850e-47 |
| Msa1123500 | Msa1126510 | 0.805369 | 1.380364e-49 | -8.615850e-47 |
| Msa1123500 | Msa1126770 | 0.800738 | 1.251997e-48 | -8.615850e-47 |
| Msa1123500 | Msa1169770 | 0.980244 | 8.961794e-150 | -8.615850e-47 |
| Msa1123500 | Msa1257510 | 0.800595 | 1.338861e-48 | -8.615850e-47 |
| Msa1123500 | Msa1413260 | 0.826745 | 2.291448e-54 | -8.615850e-47 |
| Msa1123500 | Msa1425670 | 0.806410 | 8.337886e-50 | -8.615850e-47 |
| Msa1123500 | Msa1450280 | 0.811684 | 6.191455e-51 | -8.615850e-47 |
| Msa1123500 | Msa1456050 | 0.849482 | 3.142941e-60 | -8.615850e-47 |
| Msa0521050 | Msa1123500 | 0.881507 | 2.266855e-70 | -8.615850e-47 |
| Msa0552810 | Msa1123500 | 0.811870 | 5.640483e-51 | -8.615850e-47 |
| Msa0559790 | Msa1123500 | 0.802088 | 6.623381e-49 | -8.615850e-47 |
| Msa0566700 | Msa1123500 | 0.815902 | 7.286307e-52 | -8.615850e-47 |
| Msa0580280 | Msa1123500 | 0.820366 | 7.124228e-53 | -8.615850e-47 |
| Msa0581070 | Msa1123500 | 0.808589 | 2.875189e-50 | -8.615850e-47 |
| Msa0858770 | Msa1123500 | 0.819987 | 8.701064e-53 | -8.615850e-47 |
| Msa0880470 | Msa1123500 | 0.800801 | 1.215392e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1123500 | AT3G12587.1 | 81.081 | 37 | 7 | 0 | 41 | 77 | 1 | 37 | 1.20e-16 | 66.6 |
| Msa1123500 | AT3G09455.2 | 80.000 | 35 | 7 | 0 | 41 | 75 | 1 | 35 | 9.44e-16 | 64.3 |
| Msa1123500 | AT3G09455.1 | 80.000 | 35 | 7 | 0 | 41 | 75 | 1 | 35 | 9.44e-16 | 64.3 |
| Msa1123500 | AT5G02502.1 | 77.143 | 35 | 8 | 0 | 41 | 75 | 1 | 35 | 2.17e-15 | 63.5 |
Find 20 sgRNAs with CRISPR-Local
Find 123 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TATAATTATGAACCTCGTTT+TGG | 0.249507 | 7_3:-74368469 | Msa1123500:three_prime_UTR |
| TCTAGTTTCCTTCATACTTT+GGG | 0.296845 | 7_3:+74368566 | None:intergenic |
| ATGTTGTGGTCGTGCTTCTT+AGG | 0.309733 | 7_3:+74369663 | None:intergenic |
| TTCTAGTTTCCTTCATACTT+TGG | 0.311802 | 7_3:+74368565 | None:intergenic |
| GATGAAGACGCCGAGAAAAT+TGG | 0.325577 | 7_3:+74368627 | None:intergenic |
| CCTTGAAAACGCGGTGGAAA+TGG | 0.326898 | 7_3:+74369622 | None:intergenic |
| CGGCGTCTTCATCTTTGTGC+TGG | 0.380443 | 7_3:-74368617 | Msa1123500:CDS |
| GATGATTGATGACAATGATC+TGG | 0.432151 | 7_3:-74368659 | Msa1123500:CDS |
| CTTGAAAACGCGGTGGAAAT+GGG | 0.434606 | 7_3:+74369623 | None:intergenic |
| GGAAATGGGTGTTTCTTCTC+CGG | 0.476260 | 7_3:+74369637 | None:intergenic |
| TGCTTATGTGTGCTTAAGAC+CGG | 0.487149 | 7_3:-74368371 | None:intergenic |
| TTCTTCTCCGGCGAATGTTG+TGG | 0.493038 | 7_3:+74369649 | None:intergenic |
| GTGGCTGACCCAAAGTATGA+AGG | 0.567065 | 7_3:-74368574 | Msa1123500:CDS |
| AGACTGAGATGCTTTACAGA+TGG | 0.571757 | 7_3:-74368504 | Msa1123500:three_prime_UTR |
| ATGATTGATGACAATGATCT+GGG | 0.577930 | 7_3:-74368658 | Msa1123500:CDS |
| AGCACGACCACAACATTCGC+CGG | 0.611769 | 7_3:-74369656 | Msa1123500:CDS |
| ATGATACCTTGAAAACGCGG+TGG | 0.684438 | 7_3:+74369616 | None:intergenic |
| AAATTAATATTCCCAAAACG+AGG | 0.696429 | 7_3:+74368457 | None:intergenic |
| GCGATGATACCTTGAAAACG+CGG | 0.740904 | 7_3:+74369613 | None:intergenic |
| GATAGCATATCACTATGTCG+TGG | 0.751623 | 7_3:-74368593 | Msa1123500:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAAAATAAAATAATGATGA+TGG | + | chr7_3:74368551-74368570 | None:intergenic | 10.0% |
| !! | TCTATATTACTATAAAAATT+GGG | - | chr7_3:74369188-74369207 | Msa1123500:intron | 10.0% |
| !! | ATAACAAAACAAAAAAAAAA+TGG | + | chr7_3:74369702-74369721 | None:intergenic | 10.0% |
| !! | ATAAAATAAAATAATGATGA+TGG | + | chr7_3:74368551-74368570 | None:intergenic | 10.0% |
| !! | TCTATATTACTATAAAAATT+GGG | - | chr7_3:74369188-74369207 | Msa1123500:intron | 10.0% |
| !! | ATAACAAAACAAAAAAAAAA+TGG | + | chr7_3:74369702-74369721 | None:intergenic | 10.0% |
| !! | GTCTATATTACTATAAAAAT+TGG | - | chr7_3:74369187-74369206 | Msa1123500:intron | 15.0% |
| !! | GTCTATATTACTATAAAAAT+TGG | - | chr7_3:74369187-74369206 | Msa1123500:intron | 15.0% |
| !!! | CCTAAATTTTTCAGATAATT+CGG | - | chr7_3:74368719-74368738 | Msa1123500:intron | 20.0% |
| !!! | GTTTTGATTTTAAGTTGTAA+AGG | - | chr7_3:74368786-74368805 | Msa1123500:intron | 20.0% |
| !!! | AAAGGATTTAAGATTTGATT+AGG | - | chr7_3:74368804-74368823 | Msa1123500:intron | 20.0% |
| !! | GAGAAAATATATGTTACAAT+TGG | - | chr7_3:74368854-74368873 | Msa1123500:intron | 20.0% |
| !! | TAAAAATTGTTGACAAATGT+TGG | - | chr7_3:74368887-74368906 | Msa1123500:intron | 20.0% |
| !!! | GAAAATCAATCTACTTTTTT+AGG | + | chr7_3:74369342-74369361 | None:intergenic | 20.0% |
| !!! | CCTAAATTTTTCAGATAATT+CGG | - | chr7_3:74368719-74368738 | Msa1123500:intron | 20.0% |
| !!! | GTTTTGATTTTAAGTTGTAA+AGG | - | chr7_3:74368786-74368805 | Msa1123500:intron | 20.0% |
| !!! | AAAGGATTTAAGATTTGATT+AGG | - | chr7_3:74368804-74368823 | Msa1123500:intron | 20.0% |
| !! | GAGAAAATATATGTTACAAT+TGG | - | chr7_3:74368854-74368873 | Msa1123500:intron | 20.0% |
| !! | TAAAAATTGTTGACAAATGT+TGG | - | chr7_3:74368887-74368906 | Msa1123500:intron | 20.0% |
| !!! | GAAAATCAATCTACTTTTTT+AGG | + | chr7_3:74369342-74369361 | None:intergenic | 20.0% |
| ! | CCGAATTATCTGAAAAATTT+AGG | + | chr7_3:74368722-74368741 | None:intergenic | 25.0% |
| !! | TTTGTCAACAATTTTTAACC+AGG | + | chr7_3:74368884-74368903 | None:intergenic | 25.0% |
| !!! | TTTAAGTTGTTTTTCGAAAC+AGG | - | chr7_3:74369164-74369183 | Msa1123500:intron | 25.0% |
| !!! | TTAAGTTGTTTTTCGAAACA+GGG | - | chr7_3:74369165-74369184 | Msa1123500:intron | 25.0% |
| ! | TTACTATAAAAATTGGGATC+AGG | - | chr7_3:74369194-74369213 | Msa1123500:intron | 25.0% |
| ! | TACTATAAAAATTGGGATCA+GGG | - | chr7_3:74369195-74369214 | Msa1123500:intron | 25.0% |
| !! | TATAATTATGAACCTCGTTT+TGG | - | chr7_3:74369623-74369642 | Msa1123500:CDS | 25.0% |
| !! | ATAATTATGAACCTCGTTTT+GGG | - | chr7_3:74369624-74369643 | Msa1123500:CDS | 25.0% |
| ! | AAATTAATATTCCCAAAACG+AGG | + | chr7_3:74369638-74369657 | None:intergenic | 25.0% |
| !!! | TGGGAATATTAATTTTAGCT+TGG | - | chr7_3:74369643-74369662 | Msa1123500:CDS | 25.0% |
| ! | CCGAATTATCTGAAAAATTT+AGG | + | chr7_3:74368722-74368741 | None:intergenic | 25.0% |
| !! | TTTGTCAACAATTTTTAACC+AGG | + | chr7_3:74368884-74368903 | None:intergenic | 25.0% |
| !!! | TTTAAGTTGTTTTTCGAAAC+AGG | - | chr7_3:74369164-74369183 | Msa1123500:intron | 25.0% |
| !!! | TTAAGTTGTTTTTCGAAACA+GGG | - | chr7_3:74369165-74369184 | Msa1123500:intron | 25.0% |
| ! | TTACTATAAAAATTGGGATC+AGG | - | chr7_3:74369194-74369213 | Msa1123500:intron | 25.0% |
| ! | TACTATAAAAATTGGGATCA+GGG | - | chr7_3:74369195-74369214 | Msa1123500:intron | 25.0% |
| !! | TATAATTATGAACCTCGTTT+TGG | - | chr7_3:74369623-74369642 | Msa1123500:CDS | 25.0% |
| !! | ATAATTATGAACCTCGTTTT+GGG | - | chr7_3:74369624-74369643 | Msa1123500:CDS | 25.0% |
| ! | AAATTAATATTCCCAAAACG+AGG | + | chr7_3:74369638-74369657 | None:intergenic | 25.0% |
| !!! | TGGGAATATTAATTTTAGCT+TGG | - | chr7_3:74369643-74369662 | Msa1123500:CDS | 25.0% |
| !! | ATTTGCATCAGAGTTTTGTA+AGG | - | chr7_3:74368391-74368410 | Msa1123500:three_prime_UTR | 30.0% |
| ! | TGATTTACGAGTTTTCAGAT+CGG | - | chr7_3:74368656-74368675 | Msa1123500:CDS | 30.0% |
| TGATAAGAAGTTTAGCTAGT+TGG | - | chr7_3:74369245-74369264 | Msa1123500:intron | 30.0% | |
| ATTCAAATGTGCAACAAGAA+GGG | + | chr7_3:74369279-74369298 | None:intergenic | 30.0% | |
| AATTCAAATGTGCAACAAGA+AGG | + | chr7_3:74369280-74369299 | None:intergenic | 30.0% | |
| TTGTTGCACATTTGAATTTG+TGG | - | chr7_3:74369282-74369301 | Msa1123500:intron | 30.0% | |
| ! | ATTTGAATTTGTGGTCTTGA+TGG | - | chr7_3:74369291-74369310 | Msa1123500:intron | 30.0% |
| ! | ATTTTGTGATATCACAAACC+AGG | - | chr7_3:74369375-74369394 | Msa1123500:intron | 30.0% |
| ! | ATGATTGATGACAATGATCT+GGG | - | chr7_3:74369434-74369453 | Msa1123500:intron | 30.0% |
| ! | TCTAGTTTCCTTCATACTTT+GGG | + | chr7_3:74369529-74369548 | None:intergenic | 30.0% |
| !! | TTCTAGTTTCCTTCATACTT+TGG | + | chr7_3:74369530-74369549 | None:intergenic | 30.0% |
| !! | ATTTGCATCAGAGTTTTGTA+AGG | - | chr7_3:74368391-74368410 | Msa1123500:three_prime_UTR | 30.0% |
| ! | TGATTTACGAGTTTTCAGAT+CGG | - | chr7_3:74368656-74368675 | Msa1123500:CDS | 30.0% |
| TGATAAGAAGTTTAGCTAGT+TGG | - | chr7_3:74369245-74369264 | Msa1123500:intron | 30.0% | |
| ATTCAAATGTGCAACAAGAA+GGG | + | chr7_3:74369279-74369298 | None:intergenic | 30.0% | |
| AATTCAAATGTGCAACAAGA+AGG | + | chr7_3:74369280-74369299 | None:intergenic | 30.0% | |
| TTGTTGCACATTTGAATTTG+TGG | - | chr7_3:74369282-74369301 | Msa1123500:intron | 30.0% | |
| ! | ATTTGAATTTGTGGTCTTGA+TGG | - | chr7_3:74369291-74369310 | Msa1123500:intron | 30.0% |
| ! | ATTTTGTGATATCACAAACC+AGG | - | chr7_3:74369375-74369394 | Msa1123500:intron | 30.0% |
| ! | ATGATTGATGACAATGATCT+GGG | - | chr7_3:74369434-74369453 | Msa1123500:intron | 30.0% |
| ! | TCTAGTTTCCTTCATACTTT+GGG | + | chr7_3:74369529-74369548 | None:intergenic | 30.0% |
| !! | TTCTAGTTTCCTTCATACTT+TGG | + | chr7_3:74369530-74369549 | None:intergenic | 30.0% |
| AGAAACGAGAATTGAGAAGA+AGG | + | chr7_3:74368504-74368523 | None:intergenic | 35.0% | |
| ! | GATTTACGAGTTTTCAGATC+GGG | - | chr7_3:74368657-74368676 | Msa1123500:CDS | 35.0% |
| ! | ATTTACGAGTTTTCAGATCG+GGG | - | chr7_3:74368658-74368677 | Msa1123500:CDS | 35.0% |
| TATGTTACAATTGGTAAGCC+TGG | - | chr7_3:74368863-74368882 | Msa1123500:intron | 35.0% | |
| TCAGGCTCACAATATATCAA+AGG | + | chr7_3:74368962-74368981 | None:intergenic | 35.0% | |
| TGATATATTGTGAGCCTGAT+TGG | - | chr7_3:74368963-74368982 | Msa1123500:intron | 35.0% | |
| TCAAACACATCAATCCAATC+AGG | + | chr7_3:74368980-74368999 | None:intergenic | 35.0% | |
| TAAGCACTTGTGAAACTGTT+TGG | - | chr7_3:74369014-74369033 | Msa1123500:intron | 35.0% | |
| TGGTATGCTTGATTGTCATA+TGG | - | chr7_3:74369311-74369330 | Msa1123500:intron | 35.0% | |
| AAAAATATTCGTGAGTGACC+TGG | + | chr7_3:74369396-74369415 | None:intergenic | 35.0% | |
| ! | GATGATTGATGACAATGATC+TGG | - | chr7_3:74369433-74369452 | Msa1123500:intron | 35.0% |
| ! | GGTTTCTTTGCCAATTTTCT+CGG | - | chr7_3:74369455-74369474 | Msa1123500:intron | 35.0% |
| AGAAACGAGAATTGAGAAGA+AGG | + | chr7_3:74368504-74368523 | None:intergenic | 35.0% | |
| ! | GATTTACGAGTTTTCAGATC+GGG | - | chr7_3:74368657-74368676 | Msa1123500:CDS | 35.0% |
| ! | ATTTACGAGTTTTCAGATCG+GGG | - | chr7_3:74368658-74368677 | Msa1123500:CDS | 35.0% |
| TATGTTACAATTGGTAAGCC+TGG | - | chr7_3:74368863-74368882 | Msa1123500:intron | 35.0% | |
| TCAGGCTCACAATATATCAA+AGG | + | chr7_3:74368962-74368981 | None:intergenic | 35.0% | |
| TGATATATTGTGAGCCTGAT+TGG | - | chr7_3:74368963-74368982 | Msa1123500:intron | 35.0% | |
| TCAAACACATCAATCCAATC+AGG | + | chr7_3:74368980-74368999 | None:intergenic | 35.0% | |
| TAAGCACTTGTGAAACTGTT+TGG | - | chr7_3:74369014-74369033 | Msa1123500:intron | 35.0% | |
| TGGTATGCTTGATTGTCATA+TGG | - | chr7_3:74369311-74369330 | Msa1123500:intron | 35.0% | |
| AAAAATATTCGTGAGTGACC+TGG | + | chr7_3:74369396-74369415 | None:intergenic | 35.0% | |
| ! | GATGATTGATGACAATGATC+TGG | - | chr7_3:74369433-74369452 | Msa1123500:intron | 35.0% |
| ! | GGTTTCTTTGCCAATTTTCT+CGG | - | chr7_3:74369455-74369474 | Msa1123500:intron | 35.0% |
| ATGCCGACACTTATTCTTAC+AGG | - | chr7_3:74368610-74368629 | Msa1123500:CDS | 40.0% | |
| GCACCTGTAAGAATAAGTGT+CGG | + | chr7_3:74368616-74368635 | None:intergenic | 40.0% | |
| CTGTAAATGCAATCCTGATG+TGG | - | chr7_3:74368918-74368937 | Msa1123500:intron | 40.0% | |
| AAAATCTCTGCAACCACATC+AGG | + | chr7_3:74368934-74368953 | None:intergenic | 40.0% | |
| GATAGCATATCACTATGTCG+TGG | - | chr7_3:74369499-74369518 | Msa1123500:intron | 40.0% | |
| AGACTGAGATGCTTTACAGA+TGG | - | chr7_3:74369588-74369607 | Msa1123500:intron | 40.0% | |
| TAACTAGCACAAGAGTCTAG+CGG | + | chr7_3:74368372-74368391 | None:intergenic | 40.0% | |
| ATGCCGACACTTATTCTTAC+AGG | - | chr7_3:74368610-74368629 | Msa1123500:CDS | 40.0% | |
| GCACCTGTAAGAATAAGTGT+CGG | + | chr7_3:74368616-74368635 | None:intergenic | 40.0% | |
| CTGTAAATGCAATCCTGATG+TGG | - | chr7_3:74368918-74368937 | Msa1123500:intron | 40.0% | |
| AAAATCTCTGCAACCACATC+AGG | + | chr7_3:74368934-74368953 | None:intergenic | 40.0% | |
| GATAGCATATCACTATGTCG+TGG | - | chr7_3:74369499-74369518 | Msa1123500:intron | 40.0% | |
| AGACTGAGATGCTTTACAGA+TGG | - | chr7_3:74369588-74369607 | Msa1123500:intron | 40.0% | |
| ATGTTGTGGTCGTGCTTCTT+AGG | + | chr7_3:74368432-74368451 | None:intergenic | 45.0% | |
| GGAAATGGGTGTTTCTTCTC+CGG | + | chr7_3:74368458-74368477 | None:intergenic | 45.0% | |
| CTTGAAAACGCGGTGGAAAT+GGG | + | chr7_3:74368472-74368491 | None:intergenic | 45.0% | |
| ATGATACCTTGAAAACGCGG+TGG | + | chr7_3:74368479-74368498 | None:intergenic | 45.0% | |
| GCGATGATACCTTGAAAACG+CGG | + | chr7_3:74368482-74368501 | None:intergenic | 45.0% | |
| GATGAAGACGCCGAGAAAAT+TGG | + | chr7_3:74369468-74369487 | None:intergenic | 45.0% | |
| ATGTTGTGGTCGTGCTTCTT+AGG | + | chr7_3:74368432-74368451 | None:intergenic | 45.0% | |
| GGAAATGGGTGTTTCTTCTC+CGG | + | chr7_3:74368458-74368477 | None:intergenic | 45.0% | |
| CTTGAAAACGCGGTGGAAAT+GGG | + | chr7_3:74368472-74368491 | None:intergenic | 45.0% | |
| ATGATACCTTGAAAACGCGG+TGG | + | chr7_3:74368479-74368498 | None:intergenic | 45.0% | |
| GCGATGATACCTTGAAAACG+CGG | + | chr7_3:74368482-74368501 | None:intergenic | 45.0% | |
| GATGAAGACGCCGAGAAAAT+TGG | + | chr7_3:74369468-74369487 | None:intergenic | 45.0% | |
| TTCTTCTCCGGCGAATGTTG+TGG | + | chr7_3:74368446-74368465 | None:intergenic | 50.0% | |
| CCTTGAAAACGCGGTGGAAA+TGG | + | chr7_3:74368473-74368492 | None:intergenic | 50.0% | |
| ! | CCATTTCCACCGCGTTTTCA+AGG | - | chr7_3:74368470-74368489 | Msa1123500:three_prime_UTR | 50.0% |
| GTGGCTGACCCAAAGTATGA+AGG | - | chr7_3:74369518-74369537 | Msa1123500:intron | 50.0% | |
| TTCTTCTCCGGCGAATGTTG+TGG | + | chr7_3:74368446-74368465 | None:intergenic | 50.0% | |
| CCTTGAAAACGCGGTGGAAA+TGG | + | chr7_3:74368473-74368492 | None:intergenic | 50.0% | |
| ! | CCATTTCCACCGCGTTTTCA+AGG | - | chr7_3:74368470-74368489 | Msa1123500:three_prime_UTR | 50.0% |
| GTGGCTGACCCAAAGTATGA+AGG | - | chr7_3:74369518-74369537 | Msa1123500:intron | 50.0% | |
| AGCACGACCACAACATTCGC+CGG | - | chr7_3:74368436-74368455 | Msa1123500:three_prime_UTR | 55.0% | |
| CGGCGTCTTCATCTTTGTGC+TGG | - | chr7_3:74369475-74369494 | Msa1123500:intron | 55.0% | |
| AGCACGACCACAACATTCGC+CGG | - | chr7_3:74368436-74368455 | Msa1123500:three_prime_UTR | 55.0% | |
| CGGCGTCTTCATCTTTGTGC+TGG | - | chr7_3:74369475-74369494 | Msa1123500:intron | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_3 | gene | 74368372 | 74369742 | 74368372 | ID=Msa1123500;Name=Msa1123500 |
| chr7_3 | mRNA | 74368372 | 74369742 | 74368372 | ID=Msa1123500-mRNA-1;Parent=Msa1123500;Name=Msa1123500-mRNA-1;_AED=0.05;_eAED=0.05;_QI=0|1|1|1|1|1|2|195|77 |
| chr7_3 | exon | 74368372 | 74368680 | 74368372 | ID=Msa1123500-mRNA-1:exon:19772;Parent=Msa1123500-mRNA-1 |
| chr7_3 | exon | 74369623 | 74369742 | 74369623 | ID=Msa1123500-mRNA-1:exon:19771;Parent=Msa1123500-mRNA-1 |
| chr7_3 | CDS | 74369623 | 74369742 | 74369623 | ID=Msa1123500-mRNA-1:cds;Parent=Msa1123500-mRNA-1 |
| chr7_3 | CDS | 74368567 | 74368680 | 74368567 | ID=Msa1123500-mRNA-1:cds;Parent=Msa1123500-mRNA-1 |
| chr7_3 | three_prime_UTR | 74368372 | 74368566 | 74368372 | ID=Msa1123500-mRNA-1:three_prime_utr;Parent=Msa1123500-mRNA-1 |
| Gene Sequence |
| Protein sequence |
