Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1169770 | AES81709.1 | 80.000 | 65 | 13 | 0 | 13 | 77 | 7 | 71 | 4.24e-29 | 108 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1169770 | sp|C7J4U3|OST4A_ORYSJ | 86.486 | 37 | 5 | 0 | 41 | 77 | 1 | 37 | 3.54e-17 | 70.5 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1169770 | G7KZM4 | 80.000 | 65 | 13 | 0 | 13 | 77 | 7 | 71 | 2.03e-29 | 108 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0001450 | Msa1169770 | 0.801409 | 9.128703e-49 | -8.615850e-47 |
| Msa0046740 | Msa1169770 | 0.827311 | 1.678218e-54 | -8.615850e-47 |
| Msa0054230 | Msa1169770 | 0.821352 | 4.225619e-53 | -8.615850e-47 |
| Msa0056430 | Msa1169770 | 0.805259 | 1.455300e-49 | -8.615850e-47 |
| Msa0056470 | Msa1169770 | 0.810133 | 1.341125e-50 | -8.615850e-47 |
| Msa0064350 | Msa1169770 | 0.829635 | 4.611355e-55 | -8.615850e-47 |
| Msa0064380 | Msa1169770 | 0.844696 | 6.441370e-59 | -8.615850e-47 |
| Msa0076040 | Msa1169770 | 0.816415 | 5.595851e-52 | -8.615850e-47 |
| Msa0082280 | Msa1169770 | 0.804409 | 2.190589e-49 | -8.615850e-47 |
| Msa0115990 | Msa1169770 | 0.864770 | 9.575850e-65 | -8.615850e-47 |
| Msa0615990 | Msa1169770 | 0.806374 | 8.486869e-50 | -8.615850e-47 |
| Msa0651050 | Msa1169770 | 0.874374 | 7.098628e-68 | -8.615850e-47 |
| Msa0692840 | Msa1169770 | 0.842924 | 1.920545e-58 | -8.615850e-47 |
| Msa0692940 | Msa1169770 | 0.827262 | 1.724315e-54 | -8.615850e-47 |
| Msa0708000 | Msa1169770 | -0.806132 | 9.543196e-50 | -8.615850e-47 |
| Msa0784200 | Msa1169770 | 0.853039 | 3.108863e-61 | -8.615850e-47 |
| Msa0818310 | Msa1169770 | 0.842777 | 2.101902e-58 | -8.615850e-47 |
| Msa0123560 | Msa1169770 | 0.802890 | 4.526096e-49 | -8.615850e-47 |
| Msa0149190 | Msa1169770 | 0.811733 | 6.041092e-51 | -8.615850e-47 |
| Msa0149200 | Msa1169770 | 0.845311 | 4.395753e-59 | -8.615850e-47 |
| Msa0199880 | Msa1169770 | 0.802632 | 5.117681e-49 | -8.615850e-47 |
| Msa0211840 | Msa1169770 | 0.808720 | 2.696114e-50 | -8.615850e-47 |
| Msa0369450 | Msa1169770 | 0.813690 | 2.253044e-51 | -8.615850e-47 |
| Msa0380300 | Msa1169770 | 0.808442 | 3.091543e-50 | -8.615850e-47 |
| Msa0385250 | Msa1169770 | 0.805744 | 1.151482e-49 | -8.615850e-47 |
| Msa0432210 | Msa1169770 | 0.823516 | 1.328076e-53 | -8.615850e-47 |
| Msa1078270 | Msa1169770 | 0.998879 | 3.377387e-280 | -8.615850e-47 |
| Msa1081990 | Msa1169770 | 0.829561 | 4.804343e-55 | -8.615850e-47 |
| Msa0315170 | Msa1169770 | 0.834255 | 3.330604e-56 | -8.615850e-47 |
| Msa1123500 | Msa1169770 | 0.980244 | 8.961794e-150 | -8.615850e-47 |
| Msa1126510 | Msa1169770 | 0.825709 | 4.043433e-54 | -8.615850e-47 |
| Msa1126770 | Msa1169770 | 0.808905 | 2.460904e-50 | -8.615850e-47 |
| Msa1165940 | Msa1169770 | 0.812422 | 4.274806e-51 | -8.615850e-47 |
| Msa1166860 | Msa1169770 | 0.812929 | 3.310180e-51 | -8.615850e-47 |
| Msa1169770 | Msa1218600 | 0.819205 | 1.312437e-52 | -8.615850e-47 |
| Msa1169770 | Msa1239910 | 0.814502 | 1.491104e-51 | -8.615850e-47 |
| Msa1169770 | Msa1251160 | 0.803494 | 3.394475e-49 | -8.615850e-47 |
| Msa1169770 | Msa1257510 | 0.815542 | 8.763764e-52 | -8.615850e-47 |
| Msa1169770 | Msa1413260 | 0.814774 | 1.298004e-51 | -8.615850e-47 |
| Msa1169770 | Msa1450280 | 0.817632 | 2.981876e-52 | -8.615850e-47 |
| Msa1169770 | Msa1456050 | 0.852151 | 5.571272e-61 | -8.615850e-47 |
| Msa0521050 | Msa1169770 | 0.892649 | 1.307010e-74 | -8.615850e-47 |
| Msa0552810 | Msa1169770 | 0.825634 | 4.211891e-54 | -8.615850e-47 |
| Msa0566700 | Msa1169770 | 0.839515 | 1.513032e-57 | -8.615850e-47 |
| Msa0580280 | Msa1169770 | 0.801828 | 7.488511e-49 | -8.615850e-47 |
| Msa0581070 | Msa1169770 | 0.814355 | 1.607073e-51 | -8.615850e-47 |
| Msa0858770 | Msa1169770 | 0.855065 | 8.097099e-62 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1169770 | AT3G12587.1 | 81.081 | 37 | 7 | 0 | 41 | 77 | 1 | 37 | 1.20e-16 | 66.6 |
| Msa1169770 | AT3G09455.2 | 80.000 | 35 | 7 | 0 | 41 | 75 | 1 | 35 | 9.44e-16 | 64.3 |
| Msa1169770 | AT3G09455.1 | 80.000 | 35 | 7 | 0 | 41 | 75 | 1 | 35 | 9.44e-16 | 64.3 |
| Msa1169770 | AT5G02502.1 | 77.143 | 35 | 8 | 0 | 41 | 75 | 1 | 35 | 2.17e-15 | 63.5 |
Find 20 sgRNAs with CRISPR-Local
Find 125 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TATAATTATGAACCTCGTTT+TGG | 0.249507 | 7_4:+62848481 | Msa1169770:three_prime_UTR |
| TCTAGTTTCCTTCATACTTT+GGG | 0.296845 | 7_4:-62848384 | None:intergenic |
| ATGTTGTGGTCGTGCTTCTT+AGG | 0.309733 | 7_4:-62847288 | None:intergenic |
| TTCTAGTTTCCTTCATACTT+TGG | 0.311802 | 7_4:-62848385 | None:intergenic |
| GATGAAGACGCCGAGAAAAT+TGG | 0.325577 | 7_4:-62848323 | None:intergenic |
| CCTTGAAAACGCGGTGGAAA+TGG | 0.326898 | 7_4:-62847329 | None:intergenic |
| CGGCGTCTTCATCTTTGTGC+TGG | 0.380443 | 7_4:+62848333 | Msa1169770:CDS |
| GATGATTGATGACAATGATC+TGG | 0.432151 | 7_4:+62848291 | Msa1169770:intron |
| CTTGAAAACGCGGTGGAAAT+GGG | 0.434606 | 7_4:-62847328 | None:intergenic |
| GGAAATGGGTGTTTCTTCTC+CGG | 0.476260 | 7_4:-62847314 | None:intergenic |
| TGCTTATGTGTGCTTAAGAC+CGG | 0.487149 | 7_4:+62848579 | Msa1169770:three_prime_UTR |
| TTCTTCTCCGGCGAATGTTG+TGG | 0.493038 | 7_4:-62847302 | None:intergenic |
| GTGGCTGACCCAAAGTATGA+AGG | 0.567065 | 7_4:+62848376 | Msa1169770:CDS |
| AGACTGAGATGCTTTACAGA+TGG | 0.571757 | 7_4:+62848446 | Msa1169770:three_prime_UTR |
| ATGATTGATGACAATGATCT+GGG | 0.577930 | 7_4:+62848292 | Msa1169770:CDS |
| AGCACGACCACAACATTCGC+CGG | 0.611769 | 7_4:+62847295 | Msa1169770:CDS |
| ATGATACCTTGAAAACGCGG+TGG | 0.684438 | 7_4:-62847335 | None:intergenic |
| AAATTAATATTCCCAAAACG+AGG | 0.696429 | 7_4:-62848493 | None:intergenic |
| GCGATGATACCTTGAAAACG+CGG | 0.740904 | 7_4:-62847338 | None:intergenic |
| GATAGCATATCACTATGTCG+TGG | 0.751623 | 7_4:+62848357 | Msa1169770:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAAAATAAAATAATGATGA+TGG | - | chr7_4:62847410-62847429 | None:intergenic | 10.0% |
| !! | ATAACAAAACAAAAAAAAAA+TGG | - | chr7_4:62848560-62848579 | None:intergenic | 10.0% |
| !! | ATAAAATAAAATAATGATGA+TGG | - | chr7_4:62847410-62847429 | None:intergenic | 10.0% |
| !! | ATAACAAAACAAAAAAAAAA+TGG | - | chr7_4:62848560-62848579 | None:intergenic | 10.0% |
| !! | CCTATATTACTATAAAAATT+GGG | + | chr7_4:62848046-62848065 | Msa1169770:intron | 15.0% |
| !! | CCTATATTACTATAAAAATT+GGG | + | chr7_4:62848046-62848065 | Msa1169770:intron | 15.0% |
| !!! | CCTAAATTTTTCAGATAATT+CGG | + | chr7_4:62847578-62847597 | Msa1169770:intron | 20.0% |
| !!! | GTTTTGATTTTAAGTTGTAA+AGG | + | chr7_4:62847645-62847664 | Msa1169770:intron | 20.0% |
| !!! | AAAGGATTTAAGATTTGATT+AGG | + | chr7_4:62847663-62847682 | Msa1169770:intron | 20.0% |
| !! | GAGAAAATATATGTTACAAT+TGG | + | chr7_4:62847713-62847732 | Msa1169770:intron | 20.0% |
| !! | TAAAAATTGTTGACAAATGT+TGG | + | chr7_4:62847746-62847765 | Msa1169770:intron | 20.0% |
| !!! | ATTTAAGTTGTTTTTGAAAC+AGG | + | chr7_4:62848022-62848041 | Msa1169770:intron | 20.0% |
| !!! | TTTAAGTTGTTTTTGAAACA+GGG | + | chr7_4:62848023-62848042 | Msa1169770:intron | 20.0% |
| !! | GCCTATATTACTATAAAAAT+TGG | + | chr7_4:62848045-62848064 | Msa1169770:intron | 20.0% |
| !!! | CCCAATTTTTATAGTAATAT+AGG | - | chr7_4:62848049-62848068 | None:intergenic | 20.0% |
| !!! | GAAAATCAATCTACTTTTTT+AGG | - | chr7_4:62848200-62848219 | None:intergenic | 20.0% |
| !!! | CCTAAATTTTTCAGATAATT+CGG | + | chr7_4:62847578-62847597 | Msa1169770:intron | 20.0% |
| !!! | GTTTTGATTTTAAGTTGTAA+AGG | + | chr7_4:62847645-62847664 | Msa1169770:intron | 20.0% |
| !!! | AAAGGATTTAAGATTTGATT+AGG | + | chr7_4:62847663-62847682 | Msa1169770:intron | 20.0% |
| !! | GAGAAAATATATGTTACAAT+TGG | + | chr7_4:62847713-62847732 | Msa1169770:intron | 20.0% |
| !! | TAAAAATTGTTGACAAATGT+TGG | + | chr7_4:62847746-62847765 | Msa1169770:intron | 20.0% |
| !!! | ATTTAAGTTGTTTTTGAAAC+AGG | + | chr7_4:62848022-62848041 | Msa1169770:intron | 20.0% |
| !!! | TTTAAGTTGTTTTTGAAACA+GGG | + | chr7_4:62848023-62848042 | Msa1169770:intron | 20.0% |
| !! | GCCTATATTACTATAAAAAT+TGG | + | chr7_4:62848045-62848064 | Msa1169770:intron | 20.0% |
| !!! | CCCAATTTTTATAGTAATAT+AGG | - | chr7_4:62848049-62848068 | None:intergenic | 20.0% |
| !!! | GAAAATCAATCTACTTTTTT+AGG | - | chr7_4:62848200-62848219 | None:intergenic | 20.0% |
| ! | CCGAATTATCTGAAAAATTT+AGG | - | chr7_4:62847581-62847600 | None:intergenic | 25.0% |
| !! | TTTGTCAACAATTTTTAACC+AGG | - | chr7_4:62847743-62847762 | None:intergenic | 25.0% |
| ! | TTACTATAAAAATTGGGATC+TGG | + | chr7_4:62848052-62848071 | Msa1169770:intron | 25.0% |
| ! | TACTATAAAAATTGGGATCT+GGG | + | chr7_4:62848053-62848072 | Msa1169770:intron | 25.0% |
| !! | TATAATTATGAACCTCGTTT+TGG | + | chr7_4:62848481-62848500 | Msa1169770:three_prime_UTR | 25.0% |
| !! | ATAATTATGAACCTCGTTTT+GGG | + | chr7_4:62848482-62848501 | Msa1169770:three_prime_UTR | 25.0% |
| ! | AAATTAATATTCCCAAAACG+AGG | - | chr7_4:62848496-62848515 | None:intergenic | 25.0% |
| !!! | TGGGAATATTAATTTTAGCT+TGG | + | chr7_4:62848501-62848520 | Msa1169770:three_prime_UTR | 25.0% |
| ! | CCGAATTATCTGAAAAATTT+AGG | - | chr7_4:62847581-62847600 | None:intergenic | 25.0% |
| !! | TTTGTCAACAATTTTTAACC+AGG | - | chr7_4:62847743-62847762 | None:intergenic | 25.0% |
| ! | TTACTATAAAAATTGGGATC+TGG | + | chr7_4:62848052-62848071 | Msa1169770:intron | 25.0% |
| ! | TACTATAAAAATTGGGATCT+GGG | + | chr7_4:62848053-62848072 | Msa1169770:intron | 25.0% |
| !! | TATAATTATGAACCTCGTTT+TGG | + | chr7_4:62848481-62848500 | Msa1169770:three_prime_UTR | 25.0% |
| !! | ATAATTATGAACCTCGTTTT+GGG | + | chr7_4:62848482-62848501 | Msa1169770:three_prime_UTR | 25.0% |
| ! | AAATTAATATTCCCAAAACG+AGG | - | chr7_4:62848496-62848515 | None:intergenic | 25.0% |
| !!! | TGGGAATATTAATTTTAGCT+TGG | + | chr7_4:62848501-62848520 | Msa1169770:three_prime_UTR | 25.0% |
| !! | ATTTGCATCAGAGTTTTGTA+AGG | + | chr7_4:62847250-62847269 | Msa1169770:CDS | 30.0% |
| ! | TGATTTACGAGTTTTCAGAT+CGG | + | chr7_4:62847515-62847534 | Msa1169770:intron | 30.0% |
| TGATAAGAAGTTTAGCTAGT+TGG | + | chr7_4:62848103-62848122 | Msa1169770:intron | 30.0% | |
| ATTCAAATGTGCAACAAGAA+GGG | - | chr7_4:62848137-62848156 | None:intergenic | 30.0% | |
| AATTCAAATGTGCAACAAGA+AGG | - | chr7_4:62848138-62848157 | None:intergenic | 30.0% | |
| TTGTTGCACATTTGAATTTG+TGG | + | chr7_4:62848140-62848159 | Msa1169770:intron | 30.0% | |
| ! | ATTTGAATTTGTGGTCTTGA+TGG | + | chr7_4:62848149-62848168 | Msa1169770:intron | 30.0% |
| ! | ATTTTGTGATATCACAAACC+AGG | + | chr7_4:62848233-62848252 | Msa1169770:intron | 30.0% |
| ! | ATGATTGATGACAATGATCT+GGG | + | chr7_4:62848292-62848311 | Msa1169770:CDS | 30.0% |
| ! | TCTAGTTTCCTTCATACTTT+GGG | - | chr7_4:62848387-62848406 | None:intergenic | 30.0% |
| !! | TTCTAGTTTCCTTCATACTT+TGG | - | chr7_4:62848388-62848407 | None:intergenic | 30.0% |
| !! | ATTTGCATCAGAGTTTTGTA+AGG | + | chr7_4:62847250-62847269 | Msa1169770:CDS | 30.0% |
| ! | TGATTTACGAGTTTTCAGAT+CGG | + | chr7_4:62847515-62847534 | Msa1169770:intron | 30.0% |
| TGATAAGAAGTTTAGCTAGT+TGG | + | chr7_4:62848103-62848122 | Msa1169770:intron | 30.0% | |
| ATTCAAATGTGCAACAAGAA+GGG | - | chr7_4:62848137-62848156 | None:intergenic | 30.0% | |
| AATTCAAATGTGCAACAAGA+AGG | - | chr7_4:62848138-62848157 | None:intergenic | 30.0% | |
| TTGTTGCACATTTGAATTTG+TGG | + | chr7_4:62848140-62848159 | Msa1169770:intron | 30.0% | |
| ! | ATTTGAATTTGTGGTCTTGA+TGG | + | chr7_4:62848149-62848168 | Msa1169770:intron | 30.0% |
| ! | ATTTTGTGATATCACAAACC+AGG | + | chr7_4:62848233-62848252 | Msa1169770:intron | 30.0% |
| ! | ATGATTGATGACAATGATCT+GGG | + | chr7_4:62848292-62848311 | Msa1169770:CDS | 30.0% |
| ! | TCTAGTTTCCTTCATACTTT+GGG | - | chr7_4:62848387-62848406 | None:intergenic | 30.0% |
| !! | TTCTAGTTTCCTTCATACTT+TGG | - | chr7_4:62848388-62848407 | None:intergenic | 30.0% |
| AGAAACGAGAATTGAGAAGA+AGG | - | chr7_4:62847363-62847382 | None:intergenic | 35.0% | |
| ! | GATTTACGAGTTTTCAGATC+GGG | + | chr7_4:62847516-62847535 | Msa1169770:intron | 35.0% |
| ! | ATTTACGAGTTTTCAGATCG+GGG | + | chr7_4:62847517-62847536 | Msa1169770:intron | 35.0% |
| TATGTTACAATTGGTAAGCC+TGG | + | chr7_4:62847722-62847741 | Msa1169770:intron | 35.0% | |
| TCAGGCTCACAATATATCAA+AGG | - | chr7_4:62847821-62847840 | None:intergenic | 35.0% | |
| TGATATATTGTGAGCCTGAT+TGG | + | chr7_4:62847822-62847841 | Msa1169770:intron | 35.0% | |
| TCAAACACATCAATCCAATC+AGG | - | chr7_4:62847839-62847858 | None:intergenic | 35.0% | |
| TAAGCACTTGTGAAACTGTT+TGG | + | chr7_4:62847873-62847892 | Msa1169770:intron | 35.0% | |
| TGGTATGCTTGATTGTCATA+TGG | + | chr7_4:62848169-62848188 | Msa1169770:intron | 35.0% | |
| AAAAATATTCGTGAGTGACC+TGG | - | chr7_4:62848254-62848273 | None:intergenic | 35.0% | |
| ! | GATGATTGATGACAATGATC+TGG | + | chr7_4:62848291-62848310 | Msa1169770:intron | 35.0% |
| ! | GGTTTCTTTGCCAATTTTCT+CGG | + | chr7_4:62848313-62848332 | Msa1169770:CDS | 35.0% |
| AGAAACGAGAATTGAGAAGA+AGG | - | chr7_4:62847363-62847382 | None:intergenic | 35.0% | |
| ! | GATTTACGAGTTTTCAGATC+GGG | + | chr7_4:62847516-62847535 | Msa1169770:intron | 35.0% |
| ! | ATTTACGAGTTTTCAGATCG+GGG | + | chr7_4:62847517-62847536 | Msa1169770:intron | 35.0% |
| TATGTTACAATTGGTAAGCC+TGG | + | chr7_4:62847722-62847741 | Msa1169770:intron | 35.0% | |
| TCAGGCTCACAATATATCAA+AGG | - | chr7_4:62847821-62847840 | None:intergenic | 35.0% | |
| TGATATATTGTGAGCCTGAT+TGG | + | chr7_4:62847822-62847841 | Msa1169770:intron | 35.0% | |
| TCAAACACATCAATCCAATC+AGG | - | chr7_4:62847839-62847858 | None:intergenic | 35.0% | |
| TAAGCACTTGTGAAACTGTT+TGG | + | chr7_4:62847873-62847892 | Msa1169770:intron | 35.0% | |
| TGGTATGCTTGATTGTCATA+TGG | + | chr7_4:62848169-62848188 | Msa1169770:intron | 35.0% | |
| AAAAATATTCGTGAGTGACC+TGG | - | chr7_4:62848254-62848273 | None:intergenic | 35.0% | |
| ! | GATGATTGATGACAATGATC+TGG | + | chr7_4:62848291-62848310 | Msa1169770:intron | 35.0% |
| ! | GGTTTCTTTGCCAATTTTCT+CGG | + | chr7_4:62848313-62848332 | Msa1169770:CDS | 35.0% |
| ATGCCGACACTTATTCTTAC+AGG | + | chr7_4:62847469-62847488 | Msa1169770:intron | 40.0% | |
| GCACCTGTAAGAATAAGTGT+CGG | - | chr7_4:62847475-62847494 | None:intergenic | 40.0% | |
| CTGTAAATGCAATCCTGATG+TGG | + | chr7_4:62847777-62847796 | Msa1169770:intron | 40.0% | |
| AAAATCTCTGCAACCACATC+AGG | - | chr7_4:62847793-62847812 | None:intergenic | 40.0% | |
| GATAGCATATCACTATGTCG+TGG | + | chr7_4:62848357-62848376 | Msa1169770:CDS | 40.0% | |
| AGACTGAGATGCTTTACAGA+TGG | + | chr7_4:62848446-62848465 | Msa1169770:three_prime_UTR | 40.0% | |
| TAACTAGCACAAGAGTCTAG+CGG | - | chr7_4:62847231-62847250 | None:intergenic | 40.0% | |
| ATGCCGACACTTATTCTTAC+AGG | + | chr7_4:62847469-62847488 | Msa1169770:intron | 40.0% | |
| GCACCTGTAAGAATAAGTGT+CGG | - | chr7_4:62847475-62847494 | None:intergenic | 40.0% | |
| CTGTAAATGCAATCCTGATG+TGG | + | chr7_4:62847777-62847796 | Msa1169770:intron | 40.0% | |
| AAAATCTCTGCAACCACATC+AGG | - | chr7_4:62847793-62847812 | None:intergenic | 40.0% | |
| GATAGCATATCACTATGTCG+TGG | + | chr7_4:62848357-62848376 | Msa1169770:CDS | 40.0% | |
| AGACTGAGATGCTTTACAGA+TGG | + | chr7_4:62848446-62848465 | Msa1169770:three_prime_UTR | 40.0% | |
| ATGTTGTGGTCGTGCTTCTT+AGG | - | chr7_4:62847291-62847310 | None:intergenic | 45.0% | |
| GGAAATGGGTGTTTCTTCTC+CGG | - | chr7_4:62847317-62847336 | None:intergenic | 45.0% | |
| CTTGAAAACGCGGTGGAAAT+GGG | - | chr7_4:62847331-62847350 | None:intergenic | 45.0% | |
| ATGATACCTTGAAAACGCGG+TGG | - | chr7_4:62847338-62847357 | None:intergenic | 45.0% | |
| GCGATGATACCTTGAAAACG+CGG | - | chr7_4:62847341-62847360 | None:intergenic | 45.0% | |
| GATGAAGACGCCGAGAAAAT+TGG | - | chr7_4:62848326-62848345 | None:intergenic | 45.0% | |
| ATGTTGTGGTCGTGCTTCTT+AGG | - | chr7_4:62847291-62847310 | None:intergenic | 45.0% | |
| GGAAATGGGTGTTTCTTCTC+CGG | - | chr7_4:62847317-62847336 | None:intergenic | 45.0% | |
| CTTGAAAACGCGGTGGAAAT+GGG | - | chr7_4:62847331-62847350 | None:intergenic | 45.0% | |
| ATGATACCTTGAAAACGCGG+TGG | - | chr7_4:62847338-62847357 | None:intergenic | 45.0% | |
| GCGATGATACCTTGAAAACG+CGG | - | chr7_4:62847341-62847360 | None:intergenic | 45.0% | |
| GATGAAGACGCCGAGAAAAT+TGG | - | chr7_4:62848326-62848345 | None:intergenic | 45.0% | |
| TTCTTCTCCGGCGAATGTTG+TGG | - | chr7_4:62847305-62847324 | None:intergenic | 50.0% | |
| CCTTGAAAACGCGGTGGAAA+TGG | - | chr7_4:62847332-62847351 | None:intergenic | 50.0% | |
| ! | CCATTTCCACCGCGTTTTCA+AGG | + | chr7_4:62847329-62847348 | Msa1169770:CDS | 50.0% |
| GTGGCTGACCCAAAGTATGA+AGG | + | chr7_4:62848376-62848395 | Msa1169770:CDS | 50.0% | |
| TTCTTCTCCGGCGAATGTTG+TGG | - | chr7_4:62847305-62847324 | None:intergenic | 50.0% | |
| CCTTGAAAACGCGGTGGAAA+TGG | - | chr7_4:62847332-62847351 | None:intergenic | 50.0% | |
| ! | CCATTTCCACCGCGTTTTCA+AGG | + | chr7_4:62847329-62847348 | Msa1169770:CDS | 50.0% |
| GTGGCTGACCCAAAGTATGA+AGG | + | chr7_4:62848376-62848395 | Msa1169770:CDS | 50.0% | |
| AGCACGACCACAACATTCGC+CGG | + | chr7_4:62847295-62847314 | Msa1169770:CDS | 55.0% | |
| CGGCGTCTTCATCTTTGTGC+TGG | + | chr7_4:62848333-62848352 | Msa1169770:CDS | 55.0% | |
| AGCACGACCACAACATTCGC+CGG | + | chr7_4:62847295-62847314 | Msa1169770:CDS | 55.0% | |
| CGGCGTCTTCATCTTTGTGC+TGG | + | chr7_4:62848333-62848352 | Msa1169770:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_4 | gene | 62847231 | 62848600 | 62847231 | ID=Msa1169770;Name=Msa1169770 |
| chr7_4 | mRNA | 62847231 | 62848600 | 62847231 | ID=Msa1169770-mRNA-1;Parent=Msa1169770;Name=Msa1169770-mRNA-1;_AED=0.05;_eAED=0.05;_QI=0|1|1|1|1|1|2|195|77 |
| chr7_4 | exon | 62847231 | 62847350 | 62847231 | ID=Msa1169770-mRNA-1:exon:20012;Parent=Msa1169770-mRNA-1 |
| chr7_4 | exon | 62848292 | 62848600 | 62848292 | ID=Msa1169770-mRNA-1:exon:20013;Parent=Msa1169770-mRNA-1 |
| chr7_4 | CDS | 62847231 | 62847350 | 62847231 | ID=Msa1169770-mRNA-1:cds;Parent=Msa1169770-mRNA-1 |
| chr7_4 | CDS | 62848292 | 62848405 | 62848292 | ID=Msa1169770-mRNA-1:cds;Parent=Msa1169770-mRNA-1 |
| chr7_4 | three_prime_UTR | 62848406 | 62848600 | 62848406 | ID=Msa1169770-mRNA-1:three_prime_utr;Parent=Msa1169770-mRNA-1 |
| Gene Sequence |
| Protein sequence |
