Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1089300 | XP_003597554.1 | 80.408 | 490 | 28 | 6 | 1 | 427 | 1 | 485 | 0.0 | 684 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1089300 | G7IS25 | 80.408 | 490 | 28 | 6 | 1 | 427 | 1 | 485 | 0.0 | 684 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0037180 | Msa1089300 | 0.808608 | 2.848602e-50 | -8.615850e-47 |
| Msa0045810 | Msa1089300 | 0.804948 | 1.690216e-49 | -8.615850e-47 |
| Msa0049310 | Msa1089300 | 0.821140 | 4.728871e-53 | -8.615850e-47 |
| Msa0092220 | Msa1089300 | 0.826280 | 2.959021e-54 | -8.615850e-47 |
| Msa0660650 | Msa1089300 | 0.805670 | 1.193147e-49 | -8.615850e-47 |
| Msa0733560 | Msa1089300 | 0.801652 | 8.138775e-49 | -8.615850e-47 |
| Msa0774660 | Msa1089300 | 0.823970 | 1.039447e-53 | -8.615850e-47 |
| Msa0795460 | Msa1089300 | 0.804355 | 2.247964e-49 | -8.615850e-47 |
| Msa0804170 | Msa1089300 | 0.804350 | 2.253579e-49 | -8.615850e-47 |
| Msa0812220 | Msa1089300 | 0.810301 | 1.233601e-50 | -8.615850e-47 |
| Msa0177320 | Msa1089300 | 0.801969 | 7.006287e-49 | -8.615850e-47 |
| Msa0220090 | Msa1089300 | 0.851580 | 8.088573e-61 | -8.615850e-47 |
| Msa0386910 | Msa1089300 | 0.820529 | 6.537324e-53 | -8.615850e-47 |
| Msa0427560 | Msa1089300 | 0.812505 | 4.099142e-51 | -8.615850e-47 |
| Msa1002820 | Msa1089300 | 0.801305 | 9.585611e-49 | -8.615850e-47 |
| Msa1029860 | Msa1089300 | 0.801479 | 8.830031e-49 | -8.615850e-47 |
| Msa1066150 | Msa1089300 | 0.822787 | 1.965001e-53 | -8.615850e-47 |
| Msa1068730 | Msa1089300 | 0.801774 | 7.684117e-49 | -8.615850e-47 |
| Msa1089300 | Msa1108560 | 0.813785 | 2.146691e-51 | -8.615850e-47 |
| Msa1089300 | Msa1155610 | 0.804995 | 1.652632e-49 | -8.615850e-47 |
| Msa1089300 | Msa1206220 | 0.809757 | 1.616243e-50 | -8.615850e-47 |
| Msa1089300 | Msa1225890 | 0.818328 | 2.076105e-52 | -8.615850e-47 |
| Msa1089300 | Msa1256910 | 0.807528 | 4.836426e-50 | -8.615850e-47 |
| Msa1089300 | Msa1295160 | 0.820063 | 8.361098e-53 | -8.615850e-47 |
| Msa1089300 | Msa1364190 | 0.977972 | 7.339923e-145 | -8.615850e-47 |
| Msa1089300 | Msa1368420 | 0.816792 | 4.607349e-52 | -8.615850e-47 |
| Msa1089300 | Msa1383220 | 0.814797 | 1.283222e-51 | -8.615850e-47 |
| Msa1089300 | Msa1413020 | 0.804111 | 2.526661e-49 | -8.615850e-47 |
| Msa1089300 | Msa1455940 | 0.814274 | 1.675052e-51 | -8.615850e-47 |
| Msa0261400 | Msa1089300 | 0.827885 | 1.222017e-54 | -8.615850e-47 |
| Msa0299030 | Msa1089300 | 0.861898 | 7.421228e-64 | -8.615850e-47 |
| Msa0307040 | Msa1089300 | 0.807112 | 5.926075e-50 | -8.615850e-47 |
| Msa0342660 | Msa1089300 | 0.824584 | 7.457391e-54 | -8.615850e-47 |
| Msa0354600 | Msa1089300 | 0.801067 | 1.072461e-48 | -8.615850e-47 |
| Msa0497680 | Msa1089300 | 0.805869 | 1.084101e-49 | -8.615850e-47 |
| Msa0518190 | Msa1089300 | 0.803637 | 3.169413e-49 | -8.615850e-47 |
| Msa0523720 | Msa1089300 | 0.834704 | 2.569783e-56 | -8.615850e-47 |
| Msa0583390 | Msa1089300 | 0.823401 | 1.412723e-53 | -8.615850e-47 |
| Msa0852490 | Msa1089300 | 0.802819 | 4.681476e-49 | -8.615850e-47 |
| Msa0873880 | Msa1089300 | 0.804112 | 2.526105e-49 | -8.615850e-47 |
| Msa0880910 | Msa1089300 | 0.801900 | 7.239813e-49 | -8.615850e-47 |
| Msa0967780 | Msa1089300 | 0.806124 | 9.577009e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1089300 | MtrunA17_Chr2g0329841 | 80.408 | 490 | 28 | 6 | 1 | 427 | 1 | 485 | 0.0 | 684 |
| Msa1089300 | MtrunA17_Chr8g0343091 | 49.048 | 210 | 70 | 8 | 236 | 418 | 477 | 676 | 3.89e-28 | 117 |
| Msa1089300 | MtrunA17_Chr8g0343091 | 47.059 | 153 | 57 | 7 | 1 | 145 | 1 | 137 | 1.06e-22 | 100 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1089300 | AT1G72790.1 | 33.775 | 151 | 92 | 3 | 2 | 145 | 3 | 152 | 1.06e-18 | 89.0 |
| Msa1089300 | AT1G72790.1 | 53.571 | 112 | 42 | 5 | 308 | 418 | 438 | 540 | 4.93e-14 | 74.3 |
| Msa1089300 | AT5G57070.1 | 40.230 | 87 | 48 | 2 | 11 | 95 | 8 | 92 | 2.06e-13 | 72.4 |
Find 76 sgRNAs with CRISPR-Local
Find 212 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CGTGGTGCTGTTTCTGTTTC+TGG | 0.001891 | 7_3:-2651245 | None:intergenic |
| TGTCTATGCTTCTTCTTCTT+TGG | 0.180600 | 7_3:-2651706 | None:intergenic |
| CTGTTTCTGTTTCTGGTTCC+AGG | 0.200259 | 7_3:-2651238 | None:intergenic |
| TCAACACCTGGGTTGGGATT+TGG | 0.247850 | 7_3:-2652138 | None:intergenic |
| GCTAAGGAAGCCACAGAATA+TGG | 0.251634 | 7_3:-2651123 | None:intergenic |
| AAGAAATTTCTTCACCCTTC+TGG | 0.252101 | 7_3:+2650889 | Msa1089300:CDS |
| TCCAGGTTCTTTACCACTAA+TGG | 0.263565 | 7_3:-2652097 | None:intergenic |
| AAAGTTTCAGAGCTGGTTTA+AGG | 0.293090 | 7_3:+2652184 | Msa1089300:CDS |
| TCTGTTTCTGGTTCCAGGTT+TGG | 0.325114 | 7_3:-2651233 | None:intergenic |
| CTGAATTAGGTTTGAAAATG+TGG | 0.336482 | 7_3:-2651055 | None:intergenic |
| TCTTTGAGGAAGCAGGAGAT+AGG | 0.337828 | 7_3:+2652222 | Msa1089300:CDS |
| GGAGGTGGAGGAGGAGGCGG+TGG | 0.347190 | 7_3:-2651964 | None:intergenic |
| TGCAGAAAGAAAGAATAAAA+AGG | 0.356692 | 7_3:+2651579 | Msa1089300:CDS |
| ATAGAACAAGCAAAAGGTTA+AGG | 0.377143 | 7_3:-2651097 | None:intergenic |
| CTATGCTTCTTCTTCTTTGG+AGG | 0.383439 | 7_3:-2651703 | None:intergenic |
| GGTGGAGGAGGAGGCGGTGG+AGG | 0.388825 | 7_3:-2651961 | None:intergenic |
| AAGATAGAACTTCATATAAC+AGG | 0.397696 | 7_3:+2651288 | Msa1089300:CDS |
| GTTCAATGGCGACTCATTAC+CGG | 0.410358 | 7_3:-2651932 | None:intergenic |
| TTGTTATCAACACCTGGGTT+GGG | 0.412780 | 7_3:-2652144 | None:intergenic |
| CCAGCTTTGTTATCAACACC+TGG | 0.434293 | 7_3:-2652150 | None:intergenic |
| ATAGGGAGGTCTAATCTCTA+TGG | 0.440443 | 7_3:+2652240 | Msa1089300:CDS |
| TAGAACAAGCAAAAGGTTAA+GGG | 0.449988 | 7_3:-2651096 | None:intergenic |
| AGCATGGAAGTTCAAGGTGC+AGG | 0.453582 | 7_3:+2651999 | Msa1089300:CDS |
| AATGAATTCTTTGAGGAAGC+AGG | 0.456178 | 7_3:+2652215 | Msa1089300:CDS |
| ATCTTGAACGGAGGTGGAGG+AGG | 0.459119 | 7_3:-2651973 | None:intergenic |
| GCGGCTGAGGCGGCGGCGGT+TGG | 0.464988 | 7_3:-2650928 | None:intergenic |
| AACGGAGGTGGAGGAGGAGG+CGG | 0.467554 | 7_3:-2651967 | None:intergenic |
| TGGAGAAAATGAATTCTTTG+AGG | 0.471002 | 7_3:+2652208 | Msa1089300:CDS |
| ATGCAAGTGCAATTACTAGA+AGG | 0.473585 | 7_3:-2650992 | None:intergenic |
| TCGTGTGTTTGTGTCTGAAA+AGG | 0.474236 | 7_3:-2651195 | None:intergenic |
| TTCATTGAAAGTTTCAGAGC+TGG | 0.482129 | 7_3:+2652177 | Msa1089300:CDS |
| TTGAACGGAGGTGGAGGAGG+AGG | 0.483916 | 7_3:-2651970 | None:intergenic |
| TGAATTAGGTTTGAAAATGT+GGG | 0.491533 | 7_3:-2651054 | None:intergenic |
| GTTCTATTTGCCATATTCTG+TGG | 0.492687 | 7_3:+2651113 | Msa1089300:CDS |
| GCTGGCATCTTGAACGGAGG+TGG | 0.497389 | 7_3:-2651979 | None:intergenic |
| CTTTGAGGAAGCAGGAGATA+GGG | 0.497665 | 7_3:+2652223 | Msa1089300:CDS |
| TACTTCTTCATCTATATCTA+CGG | 0.502911 | 7_3:-2652061 | None:intergenic |
| TACACCAGTAGATCAATTCC+AGG | 0.504782 | 7_3:-2652114 | None:intergenic |
| AGAACCTGGAATTGATCTAC+TGG | 0.506585 | 7_3:+2652110 | Msa1089300:CDS |
| ATGAGCGGCTGAGGCGGCGG+CGG | 0.506657 | 7_3:-2650932 | None:intergenic |
| GAATAGAACAAATCATGAAA+AGG | 0.514757 | 7_3:-2651805 | None:intergenic |
| TTTCAGAGCTGGTTTAAGGA+TGG | 0.515914 | 7_3:+2652188 | Msa1089300:CDS |
| TTTGTTATCAACACCTGGGT+TGG | 0.516139 | 7_3:-2652145 | None:intergenic |
| GGCATCTTGAACGGAGGTGG+AGG | 0.520376 | 7_3:-2651976 | None:intergenic |
| GAAGAAGGCATAGTAGTAGC+AGG | 0.520460 | 7_3:-2651769 | None:intergenic |
| AGTATGAGCGGCTGAGGCGG+CGG | 0.526310 | 7_3:-2650935 | None:intergenic |
| GTGGAGTTACCAACCATTAG+TGG | 0.532115 | 7_3:+2652084 | Msa1089300:CDS |
| CATGCTGGCATCTTGAACGG+AGG | 0.535787 | 7_3:-2651982 | None:intergenic |
| TGCACCTTGAACTTCCATGC+TGG | 0.537840 | 7_3:-2651997 | None:intergenic |
| ACCATTAGTGGTAAAGAACC+TGG | 0.541647 | 7_3:+2652096 | Msa1089300:CDS |
| GCAGTAAACACATCTTTGAA+AGG | 0.544318 | 7_3:+2651484 | Msa1089300:CDS |
| GATGCCAGCATGGAAGTTCA+AGG | 0.546768 | 7_3:+2651993 | Msa1089300:CDS |
| AAAGTGAGTATGAGCGGCTG+AGG | 0.547046 | 7_3:-2650941 | None:intergenic |
| TTCCATGCTGGCATCTTGAA+CGG | 0.547115 | 7_3:-2651985 | None:intergenic |
| TGGCAAATAGAACAAGCAAA+AGG | 0.553715 | 7_3:-2651103 | None:intergenic |
| CCAAAACCAAATGGAAGGAG+AGG | 0.555034 | 7_3:+2650866 | None:intergenic |
| AGATATAGATGAAGAAGTAG+TGG | 0.561181 | 7_3:+2652065 | Msa1089300:CDS |
| GGAAAGAACAAGAAGAAGCA+AGG | 0.563591 | 7_3:+2651505 | Msa1089300:CDS |
| AGAAGAAGAAGAAAGCATCA+AGG | 0.566307 | 7_3:+2651453 | Msa1089300:CDS |
| GCATGGAAGTTCAAGGTGCA+GGG | 0.568539 | 7_3:+2652000 | Msa1089300:CDS |
| GTGAGTATGAGCGGCTGAGG+CGG | 0.568620 | 7_3:-2650938 | None:intergenic |
| CCAGGTGTTGATAACAAAGC+TGG | 0.571763 | 7_3:+2652150 | Msa1089300:CDS |
| CTCCGTTCAAGATGCCAGCA+TGG | 0.573589 | 7_3:+2651983 | Msa1089300:CDS |
| GGTGGAGGTATTGAGTTCAA+TGG | 0.573725 | 7_3:-2651946 | None:intergenic |
| GAAGTGAAAGAGTGCAATGT+AGG | 0.576308 | 7_3:-2651032 | None:intergenic |
| AAAATGCAACAATCTTTGAA+AGG | 0.577936 | 7_3:+2651622 | Msa1089300:CDS |
| GGTTCTTTACCACTAATGGT+TGG | 0.578209 | 7_3:-2652093 | None:intergenic |
| AGAGTATGAGAAACCAAACC+TGG | 0.583436 | 7_3:+2651220 | Msa1089300:CDS |
| TCAAACCAAAACCAAATGGA+AGG | 0.610532 | 7_3:+2650861 | None:intergenic |
| CAGCTTTGTTATCAACACCT+GGG | 0.618684 | 7_3:-2652149 | None:intergenic |
| TGAGGAAGCAGGAGATAGGG+AGG | 0.629953 | 7_3:+2652226 | Msa1089300:CDS |
| CCCTTCTGGCTGCAAAACAG+CGG | 0.638122 | 7_3:+2650903 | Msa1089300:CDS |
| TGATAACAGTGCCAGAGCTG+AGG | 0.639850 | 7_3:-2650965 | None:intergenic |
| TGAGGAAAAGTGAGTATGAG+CGG | 0.649948 | 7_3:-2650947 | None:intergenic |
| GTGTATCCAAATCCCAACCC+AGG | 0.669447 | 7_3:+2652132 | Msa1089300:CDS |
| GCTGAAACTTGATGTTGTGA+CGG | 0.683300 | 7_3:-2651865 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAATTCAGTAAAAAAGAGTT+GGG | + | chr7_3:2651070-2651089 | Msa1089300:CDS | 20.0% |
| !! | TATGATTATGTCAAAAACAA+AGG | + | chr7_3:2651888-2651907 | Msa1089300:CDS | 20.0% |
| !! | TAATTCAGTAAAAAAGAGTT+GGG | + | chr7_3:2651070-2651089 | Msa1089300:CDS | 20.0% |
| !! | TATGATTATGTCAAAAACAA+AGG | + | chr7_3:2651888-2651907 | Msa1089300:CDS | 20.0% |
| ! | TGAATTAGGTTTGAAAATGT+GGG | - | chr7_3:2651057-2651076 | None:intergenic | 25.0% |
| !!! | CAACTCTTTTTTACTGAATT+AGG | - | chr7_3:2651071-2651090 | None:intergenic | 25.0% |
| ! | CTAATTCAGTAAAAAAGAGT+TGG | + | chr7_3:2651069-2651088 | Msa1089300:CDS | 25.0% |
| ! | AAGATAGAACTTCATATAAC+AGG | + | chr7_3:2651288-2651307 | Msa1089300:CDS | 25.0% |
| ! | TGCAGAAAGAAAGAATAAAA+AGG | + | chr7_3:2651579-2651598 | Msa1089300:CDS | 25.0% |
| ! | TAAAAAGGTAATTGTAACGA+AGG | + | chr7_3:2651594-2651613 | Msa1089300:CDS | 25.0% |
| ! | AAAATGCAACAATCTTTGAA+AGG | + | chr7_3:2651622-2651641 | Msa1089300:CDS | 25.0% |
| ! | GAATAGAACAAATCATGAAA+AGG | - | chr7_3:2651808-2651827 | None:intergenic | 25.0% |
| ! | TACTTCTTCATCTATATCTA+CGG | - | chr7_3:2652064-2652083 | None:intergenic | 25.0% |
| ! | TGAATTAGGTTTGAAAATGT+GGG | - | chr7_3:2651057-2651076 | None:intergenic | 25.0% |
| !!! | CAACTCTTTTTTACTGAATT+AGG | - | chr7_3:2651071-2651090 | None:intergenic | 25.0% |
| ! | CTAATTCAGTAAAAAAGAGT+TGG | + | chr7_3:2651069-2651088 | Msa1089300:CDS | 25.0% |
| ! | AAGATAGAACTTCATATAAC+AGG | + | chr7_3:2651288-2651307 | Msa1089300:CDS | 25.0% |
| ! | TGCAGAAAGAAAGAATAAAA+AGG | + | chr7_3:2651579-2651598 | Msa1089300:CDS | 25.0% |
| ! | TAAAAAGGTAATTGTAACGA+AGG | + | chr7_3:2651594-2651613 | Msa1089300:CDS | 25.0% |
| ! | AAAATGCAACAATCTTTGAA+AGG | + | chr7_3:2651622-2651641 | Msa1089300:CDS | 25.0% |
| ! | GAATAGAACAAATCATGAAA+AGG | - | chr7_3:2651808-2651827 | None:intergenic | 25.0% |
| ! | TACTTCTTCATCTATATCTA+CGG | - | chr7_3:2652064-2652083 | None:intergenic | 25.0% |
| CTGAATTAGGTTTGAAAATG+TGG | - | chr7_3:2651058-2651077 | None:intergenic | 30.0% | |
| TAGAACAAGCAAAAGGTTAA+GGG | - | chr7_3:2651099-2651118 | None:intergenic | 30.0% | |
| ATAGAACAAGCAAAAGGTTA+AGG | - | chr7_3:2651100-2651119 | None:intergenic | 30.0% | |
| !!! | CATTGTTGTTGTTTTTGCTA+AGG | - | chr7_3:2651142-2651161 | None:intergenic | 30.0% |
| !! | GGTTTGATTTTGATCTTCAT+AGG | - | chr7_3:2651177-2651196 | None:intergenic | 30.0% |
| TTAAGTTTAAGTCCAATCCA+CGG | - | chr7_3:2651415-2651434 | None:intergenic | 30.0% | |
| TATGTCAAAAACAAAGGATG+AGG | + | chr7_3:2651894-2651913 | Msa1089300:CDS | 30.0% | |
| AGATATAGATGAAGAAGTAG+TGG | + | chr7_3:2652065-2652084 | Msa1089300:CDS | 30.0% | |
| TGGAGAAAATGAATTCTTTG+AGG | + | chr7_3:2652208-2652227 | Msa1089300:CDS | 30.0% | |
| !!! | TTAATGGTTTTGGTGATGAA+GGG | - | chr7_3:2652268-2652287 | None:intergenic | 30.0% |
| CTGAATTAGGTTTGAAAATG+TGG | - | chr7_3:2651058-2651077 | None:intergenic | 30.0% | |
| TAGAACAAGCAAAAGGTTAA+GGG | - | chr7_3:2651099-2651118 | None:intergenic | 30.0% | |
| ATAGAACAAGCAAAAGGTTA+AGG | - | chr7_3:2651100-2651119 | None:intergenic | 30.0% | |
| !!! | CATTGTTGTTGTTTTTGCTA+AGG | - | chr7_3:2651142-2651161 | None:intergenic | 30.0% |
| !! | GGTTTGATTTTGATCTTCAT+AGG | - | chr7_3:2651177-2651196 | None:intergenic | 30.0% |
| TTAAGTTTAAGTCCAATCCA+CGG | - | chr7_3:2651415-2651434 | None:intergenic | 30.0% | |
| TATGTCAAAAACAAAGGATG+AGG | + | chr7_3:2651894-2651913 | Msa1089300:CDS | 30.0% | |
| AGATATAGATGAAGAAGTAG+TGG | + | chr7_3:2652065-2652084 | Msa1089300:CDS | 30.0% | |
| TGGAGAAAATGAATTCTTTG+AGG | + | chr7_3:2652208-2652227 | Msa1089300:CDS | 30.0% | |
| !!! | TTAATGGTTTTGGTGATGAA+GGG | - | chr7_3:2652268-2652287 | None:intergenic | 30.0% |
| AAGAAATTTCTTCACCCTTC+TGG | + | chr7_3:2650889-2650908 | Msa1089300:CDS | 35.0% | |
| ATGCAAGTGCAATTACTAGA+AGG | - | chr7_3:2650995-2651014 | None:intergenic | 35.0% | |
| TGGCAAATAGAACAAGCAAA+AGG | - | chr7_3:2651106-2651125 | None:intergenic | 35.0% | |
| GTTCTATTTGCCATATTCTG+TGG | + | chr7_3:2651113-2651132 | Msa1089300:CDS | 35.0% | |
| ! | TTTTGATCTTCATAGGAACG+TGG | - | chr7_3:2651170-2651189 | None:intergenic | 35.0% |
| GAACTTCATATAACAGGTTG+AGG | + | chr7_3:2651294-2651313 | Msa1089300:intron | 35.0% | |
| !! | AGAAGAAGAAGAAAGCATCA+AGG | + | chr7_3:2651453-2651472 | Msa1089300:CDS | 35.0% |
| GCAGTAAACACATCTTTGAA+AGG | + | chr7_3:2651484-2651503 | Msa1089300:CDS | 35.0% | |
| TGTCTATGCTTCTTCTTCTT+TGG | - | chr7_3:2651709-2651728 | None:intergenic | 35.0% | |
| ! | GAGGATTTTTCTGTGATTAC+CGG | + | chr7_3:2651913-2651932 | Msa1089300:CDS | 35.0% |
| TTCATTGAAAGTTTCAGAGC+TGG | + | chr7_3:2652177-2652196 | Msa1089300:CDS | 35.0% | |
| ! | AAAGTTTCAGAGCTGGTTTA+AGG | + | chr7_3:2652184-2652203 | Msa1089300:CDS | 35.0% |
| ! | AATGAATTCTTTGAGGAAGC+AGG | + | chr7_3:2652215-2652234 | Msa1089300:CDS | 35.0% |
| AAGAAATTTCTTCACCCTTC+TGG | + | chr7_3:2650889-2650908 | Msa1089300:CDS | 35.0% | |
| ATGCAAGTGCAATTACTAGA+AGG | - | chr7_3:2650995-2651014 | None:intergenic | 35.0% | |
| TGGCAAATAGAACAAGCAAA+AGG | - | chr7_3:2651106-2651125 | None:intergenic | 35.0% | |
| GTTCTATTTGCCATATTCTG+TGG | + | chr7_3:2651113-2651132 | Msa1089300:CDS | 35.0% | |
| ! | TTTTGATCTTCATAGGAACG+TGG | - | chr7_3:2651170-2651189 | None:intergenic | 35.0% |
| GAACTTCATATAACAGGTTG+AGG | + | chr7_3:2651294-2651313 | Msa1089300:intron | 35.0% | |
| !! | AGAAGAAGAAGAAAGCATCA+AGG | + | chr7_3:2651453-2651472 | Msa1089300:CDS | 35.0% |
| GCAGTAAACACATCTTTGAA+AGG | + | chr7_3:2651484-2651503 | Msa1089300:CDS | 35.0% | |
| TGTCTATGCTTCTTCTTCTT+TGG | - | chr7_3:2651709-2651728 | None:intergenic | 35.0% | |
| ! | GAGGATTTTTCTGTGATTAC+CGG | + | chr7_3:2651913-2651932 | Msa1089300:CDS | 35.0% |
| TTCATTGAAAGTTTCAGAGC+TGG | + | chr7_3:2652177-2652196 | Msa1089300:CDS | 35.0% | |
| ! | AAAGTTTCAGAGCTGGTTTA+AGG | + | chr7_3:2652184-2652203 | Msa1089300:CDS | 35.0% |
| ! | AATGAATTCTTTGAGGAAGC+AGG | + | chr7_3:2652215-2652234 | Msa1089300:CDS | 35.0% |
| TGAGGAAAAGTGAGTATGAG+CGG | - | chr7_3:2650950-2650969 | None:intergenic | 40.0% | |
| ! | GAAGTGAAAGAGTGCAATGT+AGG | - | chr7_3:2651035-2651054 | None:intergenic | 40.0% |
| TCGTGTGTTTGTGTCTGAAA+AGG | - | chr7_3:2651198-2651217 | None:intergenic | 40.0% | |
| AGAGTATGAGAAACCAAACC+TGG | + | chr7_3:2651220-2651239 | Msa1089300:CDS | 40.0% | |
| GAGTACTCATACCAAAAACG+TGG | - | chr7_3:2651266-2651285 | None:intergenic | 40.0% | |
| TTAACTCATACCCAGATCTC+CGG | + | chr7_3:2651321-2651340 | Msa1089300:intron | 40.0% | |
| TTAAGTCCAATCCACGGTAA+CGG | - | chr7_3:2651409-2651428 | None:intergenic | 40.0% | |
| GGAAAGAACAAGAAGAAGCA+AGG | + | chr7_3:2651505-2651524 | Msa1089300:CDS | 40.0% | |
| CTATGCTTCTTCTTCTTTGG+AGG | - | chr7_3:2651706-2651725 | None:intergenic | 40.0% | |
| GGAGAAGAAGAAGAAGAAGA+AGG | - | chr7_3:2651787-2651806 | None:intergenic | 40.0% | |
| GCTGAAACTTGATGTTGTGA+CGG | - | chr7_3:2651868-2651887 | None:intergenic | 40.0% | |
| GGTTCTTTACCACTAATGGT+TGG | - | chr7_3:2652096-2652115 | None:intergenic | 40.0% | |
| ACCATTAGTGGTAAAGAACC+TGG | + | chr7_3:2652096-2652115 | Msa1089300:CDS | 40.0% | |
| TCCAGGTTCTTTACCACTAA+TGG | - | chr7_3:2652100-2652119 | None:intergenic | 40.0% | |
| AGAACCTGGAATTGATCTAC+TGG | + | chr7_3:2652110-2652129 | Msa1089300:CDS | 40.0% | |
| TACACCAGTAGATCAATTCC+AGG | - | chr7_3:2652117-2652136 | None:intergenic | 40.0% | |
| TTGTTATCAACACCTGGGTT+GGG | - | chr7_3:2652147-2652166 | None:intergenic | 40.0% | |
| ! | TTTGTTATCAACACCTGGGT+TGG | - | chr7_3:2652148-2652167 | None:intergenic | 40.0% |
| !! | CAGCTTTGTTATCAACACCT+GGG | - | chr7_3:2652152-2652171 | None:intergenic | 40.0% |
| ! | TTTCAGAGCTGGTTTAAGGA+TGG | + | chr7_3:2652188-2652207 | Msa1089300:CDS | 40.0% |
| ATAGGGAGGTCTAATCTCTA+TGG | + | chr7_3:2652240-2652259 | Msa1089300:CDS | 40.0% | |
| TGAGGAAAAGTGAGTATGAG+CGG | - | chr7_3:2650950-2650969 | None:intergenic | 40.0% | |
| ! | GAAGTGAAAGAGTGCAATGT+AGG | - | chr7_3:2651035-2651054 | None:intergenic | 40.0% |
| TCGTGTGTTTGTGTCTGAAA+AGG | - | chr7_3:2651198-2651217 | None:intergenic | 40.0% | |
| AGAGTATGAGAAACCAAACC+TGG | + | chr7_3:2651220-2651239 | Msa1089300:CDS | 40.0% | |
| GAGTACTCATACCAAAAACG+TGG | - | chr7_3:2651266-2651285 | None:intergenic | 40.0% | |
| TTAACTCATACCCAGATCTC+CGG | + | chr7_3:2651321-2651340 | Msa1089300:intron | 40.0% | |
| TTAAGTCCAATCCACGGTAA+CGG | - | chr7_3:2651409-2651428 | None:intergenic | 40.0% | |
| GGAAAGAACAAGAAGAAGCA+AGG | + | chr7_3:2651505-2651524 | Msa1089300:CDS | 40.0% | |
| CTATGCTTCTTCTTCTTTGG+AGG | - | chr7_3:2651706-2651725 | None:intergenic | 40.0% | |
| GGAGAAGAAGAAGAAGAAGA+AGG | - | chr7_3:2651787-2651806 | None:intergenic | 40.0% | |
| GCTGAAACTTGATGTTGTGA+CGG | - | chr7_3:2651868-2651887 | None:intergenic | 40.0% | |
| GGTTCTTTACCACTAATGGT+TGG | - | chr7_3:2652096-2652115 | None:intergenic | 40.0% | |
| ACCATTAGTGGTAAAGAACC+TGG | + | chr7_3:2652096-2652115 | Msa1089300:CDS | 40.0% | |
| TCCAGGTTCTTTACCACTAA+TGG | - | chr7_3:2652100-2652119 | None:intergenic | 40.0% | |
| AGAACCTGGAATTGATCTAC+TGG | + | chr7_3:2652110-2652129 | Msa1089300:CDS | 40.0% | |
| TACACCAGTAGATCAATTCC+AGG | - | chr7_3:2652117-2652136 | None:intergenic | 40.0% | |
| TTGTTATCAACACCTGGGTT+GGG | - | chr7_3:2652147-2652166 | None:intergenic | 40.0% | |
| ! | TTTGTTATCAACACCTGGGT+TGG | - | chr7_3:2652148-2652167 | None:intergenic | 40.0% |
| !! | CAGCTTTGTTATCAACACCT+GGG | - | chr7_3:2652152-2652171 | None:intergenic | 40.0% |
| ! | TTTCAGAGCTGGTTTAAGGA+TGG | + | chr7_3:2652188-2652207 | Msa1089300:CDS | 40.0% |
| ATAGGGAGGTCTAATCTCTA+TGG | + | chr7_3:2652240-2652259 | Msa1089300:CDS | 40.0% | |
| !! | TACTCACTTTTCCTCAGCTC+TGG | + | chr7_3:2650954-2650973 | Msa1089300:CDS | 45.0% |
| GCTAAGGAAGCCACAGAATA+TGG | - | chr7_3:2651126-2651145 | None:intergenic | 45.0% | |
| !! | TCTGTTTCTGGTTCCAGGTT+TGG | - | chr7_3:2651236-2651255 | None:intergenic | 45.0% |
| !! | CTGTTTCTGTTTCTGGTTCC+AGG | - | chr7_3:2651241-2651260 | None:intergenic | 45.0% |
| ! | CAGAAACAGCACCACGTTTT+TGG | + | chr7_3:2651252-2651271 | Msa1089300:CDS | 45.0% |
| ACTCATGTTAACCGTTACCG+TGG | + | chr7_3:2651395-2651414 | Msa1089300:intron | 45.0% | |
| TGTTAACCGTTACCGTGGAT+TGG | + | chr7_3:2651400-2651419 | Msa1089300:intron | 45.0% | |
| ! | GAAGAAGGCATAGTAGTAGC+AGG | - | chr7_3:2651772-2651791 | None:intergenic | 45.0% |
| GTTCAATGGCGACTCATTAC+CGG | - | chr7_3:2651935-2651954 | None:intergenic | 45.0% | |
| !! | GGTGGAGGTATTGAGTTCAA+TGG | - | chr7_3:2651949-2651968 | None:intergenic | 45.0% |
| TTCCATGCTGGCATCTTGAA+CGG | - | chr7_3:2651988-2652007 | None:intergenic | 45.0% | |
| GTGGAGTTACCAACCATTAG+TGG | + | chr7_3:2652084-2652103 | Msa1089300:CDS | 45.0% | |
| !! | CCAGCTTTGTTATCAACACC+TGG | - | chr7_3:2652153-2652172 | None:intergenic | 45.0% |
| !! | CCAGGTGTTGATAACAAAGC+TGG | + | chr7_3:2652150-2652169 | Msa1089300:CDS | 45.0% |
| ! | TCTTTGAGGAAGCAGGAGAT+AGG | + | chr7_3:2652222-2652241 | Msa1089300:CDS | 45.0% |
| ! | CTTTGAGGAAGCAGGAGATA+GGG | + | chr7_3:2652223-2652242 | Msa1089300:CDS | 45.0% |
| !! | TACTCACTTTTCCTCAGCTC+TGG | + | chr7_3:2650954-2650973 | Msa1089300:CDS | 45.0% |
| GCTAAGGAAGCCACAGAATA+TGG | - | chr7_3:2651126-2651145 | None:intergenic | 45.0% | |
| !! | TCTGTTTCTGGTTCCAGGTT+TGG | - | chr7_3:2651236-2651255 | None:intergenic | 45.0% |
| !! | CTGTTTCTGTTTCTGGTTCC+AGG | - | chr7_3:2651241-2651260 | None:intergenic | 45.0% |
| ! | CAGAAACAGCACCACGTTTT+TGG | + | chr7_3:2651252-2651271 | Msa1089300:CDS | 45.0% |
| ACTCATGTTAACCGTTACCG+TGG | + | chr7_3:2651395-2651414 | Msa1089300:intron | 45.0% | |
| TGTTAACCGTTACCGTGGAT+TGG | + | chr7_3:2651400-2651419 | Msa1089300:intron | 45.0% | |
| ! | GAAGAAGGCATAGTAGTAGC+AGG | - | chr7_3:2651772-2651791 | None:intergenic | 45.0% |
| GTTCAATGGCGACTCATTAC+CGG | - | chr7_3:2651935-2651954 | None:intergenic | 45.0% | |
| !! | GGTGGAGGTATTGAGTTCAA+TGG | - | chr7_3:2651949-2651968 | None:intergenic | 45.0% |
| TTCCATGCTGGCATCTTGAA+CGG | - | chr7_3:2651988-2652007 | None:intergenic | 45.0% | |
| GTGGAGTTACCAACCATTAG+TGG | + | chr7_3:2652084-2652103 | Msa1089300:CDS | 45.0% | |
| !! | CCAGCTTTGTTATCAACACC+TGG | - | chr7_3:2652153-2652172 | None:intergenic | 45.0% |
| !! | CCAGGTGTTGATAACAAAGC+TGG | + | chr7_3:2652150-2652169 | Msa1089300:CDS | 45.0% |
| ! | TCTTTGAGGAAGCAGGAGAT+AGG | + | chr7_3:2652222-2652241 | Msa1089300:CDS | 45.0% |
| ! | CTTTGAGGAAGCAGGAGATA+GGG | + | chr7_3:2652223-2652242 | Msa1089300:CDS | 45.0% |
| AAAGTGAGTATGAGCGGCTG+AGG | - | chr7_3:2650944-2650963 | None:intergenic | 50.0% | |
| TGATAACAGTGCCAGAGCTG+AGG | - | chr7_3:2650968-2650987 | None:intergenic | 50.0% | |
| !! | CGTGGTGCTGTTTCTGTTTC+TGG | - | chr7_3:2651248-2651267 | None:intergenic | 50.0% |
| AAGACTCTTGCCGGAGATCT+GGG | - | chr7_3:2651334-2651353 | None:intergenic | 50.0% | |
| AAAGACTCTTGCCGGAGATC+TGG | - | chr7_3:2651335-2651354 | None:intergenic | 50.0% | |
| ATCTCCGGCAAGAGTCTTTG+TGG | + | chr7_3:2651336-2651355 | Msa1089300:intron | 50.0% | |
| TCTCCGGCAAGAGTCTTTGT+GGG | + | chr7_3:2651337-2651356 | Msa1089300:intron | 50.0% | |
| AAATCGCCACCGTTCATCTC+CGG | - | chr7_3:2651366-2651385 | None:intergenic | 50.0% | |
| GATGCCAGCATGGAAGTTCA+AGG | + | chr7_3:2651993-2652012 | Msa1089300:CDS | 50.0% | |
| TGCACCTTGAACTTCCATGC+TGG | - | chr7_3:2652000-2652019 | None:intergenic | 50.0% | |
| AGCATGGAAGTTCAAGGTGC+AGG | + | chr7_3:2651999-2652018 | Msa1089300:CDS | 50.0% | |
| GCATGGAAGTTCAAGGTGCA+GGG | + | chr7_3:2652000-2652019 | Msa1089300:CDS | 50.0% | |
| GTGTATCCAAATCCCAACCC+AGG | + | chr7_3:2652132-2652151 | Msa1089300:CDS | 50.0% | |
| ! | TCAACACCTGGGTTGGGATT+TGG | - | chr7_3:2652141-2652160 | None:intergenic | 50.0% |
| AAAGTGAGTATGAGCGGCTG+AGG | - | chr7_3:2650944-2650963 | None:intergenic | 50.0% | |
| TGATAACAGTGCCAGAGCTG+AGG | - | chr7_3:2650968-2650987 | None:intergenic | 50.0% | |
| !! | CGTGGTGCTGTTTCTGTTTC+TGG | - | chr7_3:2651248-2651267 | None:intergenic | 50.0% |
| AAGACTCTTGCCGGAGATCT+GGG | - | chr7_3:2651334-2651353 | None:intergenic | 50.0% | |
| AAAGACTCTTGCCGGAGATC+TGG | - | chr7_3:2651335-2651354 | None:intergenic | 50.0% | |
| ATCTCCGGCAAGAGTCTTTG+TGG | + | chr7_3:2651336-2651355 | Msa1089300:intron | 50.0% | |
| TCTCCGGCAAGAGTCTTTGT+GGG | + | chr7_3:2651337-2651356 | Msa1089300:intron | 50.0% | |
| AAATCGCCACCGTTCATCTC+CGG | - | chr7_3:2651366-2651385 | None:intergenic | 50.0% | |
| GATGCCAGCATGGAAGTTCA+AGG | + | chr7_3:2651993-2652012 | Msa1089300:CDS | 50.0% | |
| TGCACCTTGAACTTCCATGC+TGG | - | chr7_3:2652000-2652019 | None:intergenic | 50.0% | |
| AGCATGGAAGTTCAAGGTGC+AGG | + | chr7_3:2651999-2652018 | Msa1089300:CDS | 50.0% | |
| GCATGGAAGTTCAAGGTGCA+GGG | + | chr7_3:2652000-2652019 | Msa1089300:CDS | 50.0% | |
| GTGTATCCAAATCCCAACCC+AGG | + | chr7_3:2652132-2652151 | Msa1089300:CDS | 50.0% | |
| ! | TCAACACCTGGGTTGGGATT+TGG | - | chr7_3:2652141-2652160 | None:intergenic | 50.0% |
| !! | CCGCTGTTTTGCAGCCAGAA+GGG | - | chr7_3:2650906-2650925 | None:intergenic | 55.0% |
| ! | CCCTTCTGGCTGCAAAACAG+CGG | + | chr7_3:2650903-2650922 | Msa1089300:CDS | 55.0% |
| CGACCCACAAAGACTCTTGC+CGG | - | chr7_3:2651343-2651362 | None:intergenic | 55.0% | |
| CAAGAGTCTTTGTGGGTCGC+CGG | + | chr7_3:2651344-2651363 | Msa1089300:intron | 55.0% | |
| ATCTTGAACGGAGGTGGAGG+AGG | - | chr7_3:2651976-2651995 | None:intergenic | 55.0% | |
| CATGCTGGCATCTTGAACGG+AGG | - | chr7_3:2651985-2652004 | None:intergenic | 55.0% | |
| CTCCGTTCAAGATGCCAGCA+TGG | + | chr7_3:2651983-2652002 | Msa1089300:CDS | 55.0% | |
| TGAGGAAGCAGGAGATAGGG+AGG | + | chr7_3:2652226-2652245 | Msa1089300:CDS | 55.0% | |
| !! | CCGCTGTTTTGCAGCCAGAA+GGG | - | chr7_3:2650906-2650925 | None:intergenic | 55.0% |
| ! | CCCTTCTGGCTGCAAAACAG+CGG | + | chr7_3:2650903-2650922 | Msa1089300:CDS | 55.0% |
| CGACCCACAAAGACTCTTGC+CGG | - | chr7_3:2651343-2651362 | None:intergenic | 55.0% | |
| CAAGAGTCTTTGTGGGTCGC+CGG | + | chr7_3:2651344-2651363 | Msa1089300:intron | 55.0% | |
| ATCTTGAACGGAGGTGGAGG+AGG | - | chr7_3:2651976-2651995 | None:intergenic | 55.0% | |
| CATGCTGGCATCTTGAACGG+AGG | - | chr7_3:2651985-2652004 | None:intergenic | 55.0% | |
| CTCCGTTCAAGATGCCAGCA+TGG | + | chr7_3:2651983-2652002 | Msa1089300:CDS | 55.0% | |
| TGAGGAAGCAGGAGATAGGG+AGG | + | chr7_3:2652226-2652245 | Msa1089300:CDS | 55.0% | |
| !! | GCCGCTGTTTTGCAGCCAGA+AGG | - | chr7_3:2650907-2650926 | None:intergenic | 60.0% |
| GTGAGTATGAGCGGCTGAGG+CGG | - | chr7_3:2650941-2650960 | None:intergenic | 60.0% | |
| TGTGGGTCGCCGGAGATGAA+CGG | + | chr7_3:2651354-2651373 | Msa1089300:intron | 60.0% | |
| TTGAACGGAGGTGGAGGAGG+AGG | - | chr7_3:2651973-2651992 | None:intergenic | 60.0% | |
| GGCATCTTGAACGGAGGTGG+AGG | - | chr7_3:2651979-2651998 | None:intergenic | 60.0% | |
| GCTGGCATCTTGAACGGAGG+TGG | - | chr7_3:2651982-2652001 | None:intergenic | 60.0% | |
| !! | GCCGCTGTTTTGCAGCCAGA+AGG | - | chr7_3:2650907-2650926 | None:intergenic | 60.0% |
| GTGAGTATGAGCGGCTGAGG+CGG | - | chr7_3:2650941-2650960 | None:intergenic | 60.0% | |
| TGTGGGTCGCCGGAGATGAA+CGG | + | chr7_3:2651354-2651373 | Msa1089300:intron | 60.0% | |
| TTGAACGGAGGTGGAGGAGG+AGG | - | chr7_3:2651973-2651992 | None:intergenic | 60.0% | |
| GGCATCTTGAACGGAGGTGG+AGG | - | chr7_3:2651979-2651998 | None:intergenic | 60.0% | |
| GCTGGCATCTTGAACGGAGG+TGG | - | chr7_3:2651982-2652001 | None:intergenic | 60.0% | |
| AGTATGAGCGGCTGAGGCGG+CGG | - | chr7_3:2650938-2650957 | None:intergenic | 65.0% | |
| AACGGAGGTGGAGGAGGAGG+CGG | - | chr7_3:2651970-2651989 | None:intergenic | 65.0% | |
| AGTATGAGCGGCTGAGGCGG+CGG | - | chr7_3:2650938-2650957 | None:intergenic | 65.0% | |
| AACGGAGGTGGAGGAGGAGG+CGG | - | chr7_3:2651970-2651989 | None:intergenic | 65.0% | |
| GGGTCGCCGGAGATGAACGG+TGG | + | chr7_3:2651357-2651376 | Msa1089300:intron | 70.0% | |
| GGGTCGCCGGAGATGAACGG+TGG | + | chr7_3:2651357-2651376 | Msa1089300:intron | 70.0% | |
| ATGAGCGGCTGAGGCGGCGG+CGG | - | chr7_3:2650935-2650954 | None:intergenic | 75.0% | |
| GGTGGAGGAGGAGGCGGTGG+AGG | - | chr7_3:2651964-2651983 | None:intergenic | 75.0% | |
| GGAGGTGGAGGAGGAGGCGG+TGG | - | chr7_3:2651967-2651986 | None:intergenic | 75.0% | |
| ATGAGCGGCTGAGGCGGCGG+CGG | - | chr7_3:2650935-2650954 | None:intergenic | 75.0% | |
| GGTGGAGGAGGAGGCGGTGG+AGG | - | chr7_3:2651964-2651983 | None:intergenic | 75.0% | |
| GGAGGTGGAGGAGGAGGCGG+TGG | - | chr7_3:2651967-2651986 | None:intergenic | 75.0% | |
| ! | GCGGCTGAGGCGGCGGCGGT+TGG | - | chr7_3:2650931-2650950 | None:intergenic | 85.0% |
| ! | GCGGCTGAGGCGGCGGCGGT+TGG | - | chr7_3:2650931-2650950 | None:intergenic | 85.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_3 | gene | 2650876 | 2652287 | 2650876 | ID=Msa1089300;Name=Msa1089300 |
| chr7_3 | mRNA | 2650876 | 2652287 | 2650876 | ID=Msa1089300-mRNA-1;Parent=Msa1089300;Name=Msa1089300-mRNA-1;_AED=0.05;_eAED=0.06;_QI=0|0|0|1|1|1|2|0|427 |
| chr7_3 | exon | 2650876 | 2651309 | 2650876 | ID=Msa1089300-mRNA-1:exon:1099;Parent=Msa1089300-mRNA-1 |
| chr7_3 | exon | 2651438 | 2652287 | 2651438 | ID=Msa1089300-mRNA-1:exon:1100;Parent=Msa1089300-mRNA-1 |
| chr7_3 | CDS | 2650876 | 2651309 | 2650876 | ID=Msa1089300-mRNA-1:cds;Parent=Msa1089300-mRNA-1 |
| chr7_3 | CDS | 2651438 | 2652287 | 2651438 | ID=Msa1089300-mRNA-1:cds;Parent=Msa1089300-mRNA-1 |
| Gene Sequence |
| Protein sequence |
