AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1089300


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1089300 MtrunA17_Chr2g0329841 80.408 490 28 6 1 427 1 485 0.0 684
Msa1089300 MtrunA17_Chr8g0343091 49.048 210 70 8 236 418 477 676 3.89e-28 117
Msa1089300 MtrunA17_Chr8g0343091 47.059 153 57 7 1 145 1 137 1.06e-22 100
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1089300 AT1G72790.1 33.775 151 92 3 2 145 3 152 1.06e-18 89.0
Msa1089300 AT1G72790.1 53.571 112 42 5 308 418 438 540 4.93e-14 74.3
Msa1089300 AT5G57070.1 40.230 87 48 2 11 95 8 92 2.06e-13 72.4

Find 76 sgRNAs with CRISPR-Local

Find 212 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CGTGGTGCTGTTTCTGTTTC+TGG 0.001891 7_3:-2651245 None:intergenic
TGTCTATGCTTCTTCTTCTT+TGG 0.180600 7_3:-2651706 None:intergenic
CTGTTTCTGTTTCTGGTTCC+AGG 0.200259 7_3:-2651238 None:intergenic
TCAACACCTGGGTTGGGATT+TGG 0.247850 7_3:-2652138 None:intergenic
GCTAAGGAAGCCACAGAATA+TGG 0.251634 7_3:-2651123 None:intergenic
AAGAAATTTCTTCACCCTTC+TGG 0.252101 7_3:+2650889 Msa1089300:CDS
TCCAGGTTCTTTACCACTAA+TGG 0.263565 7_3:-2652097 None:intergenic
AAAGTTTCAGAGCTGGTTTA+AGG 0.293090 7_3:+2652184 Msa1089300:CDS
TCTGTTTCTGGTTCCAGGTT+TGG 0.325114 7_3:-2651233 None:intergenic
CTGAATTAGGTTTGAAAATG+TGG 0.336482 7_3:-2651055 None:intergenic
TCTTTGAGGAAGCAGGAGAT+AGG 0.337828 7_3:+2652222 Msa1089300:CDS
GGAGGTGGAGGAGGAGGCGG+TGG 0.347190 7_3:-2651964 None:intergenic
TGCAGAAAGAAAGAATAAAA+AGG 0.356692 7_3:+2651579 Msa1089300:CDS
ATAGAACAAGCAAAAGGTTA+AGG 0.377143 7_3:-2651097 None:intergenic
CTATGCTTCTTCTTCTTTGG+AGG 0.383439 7_3:-2651703 None:intergenic
GGTGGAGGAGGAGGCGGTGG+AGG 0.388825 7_3:-2651961 None:intergenic
AAGATAGAACTTCATATAAC+AGG 0.397696 7_3:+2651288 Msa1089300:CDS
GTTCAATGGCGACTCATTAC+CGG 0.410358 7_3:-2651932 None:intergenic
TTGTTATCAACACCTGGGTT+GGG 0.412780 7_3:-2652144 None:intergenic
CCAGCTTTGTTATCAACACC+TGG 0.434293 7_3:-2652150 None:intergenic
ATAGGGAGGTCTAATCTCTA+TGG 0.440443 7_3:+2652240 Msa1089300:CDS
TAGAACAAGCAAAAGGTTAA+GGG 0.449988 7_3:-2651096 None:intergenic
AGCATGGAAGTTCAAGGTGC+AGG 0.453582 7_3:+2651999 Msa1089300:CDS
AATGAATTCTTTGAGGAAGC+AGG 0.456178 7_3:+2652215 Msa1089300:CDS
ATCTTGAACGGAGGTGGAGG+AGG 0.459119 7_3:-2651973 None:intergenic
GCGGCTGAGGCGGCGGCGGT+TGG 0.464988 7_3:-2650928 None:intergenic
AACGGAGGTGGAGGAGGAGG+CGG 0.467554 7_3:-2651967 None:intergenic
TGGAGAAAATGAATTCTTTG+AGG 0.471002 7_3:+2652208 Msa1089300:CDS
ATGCAAGTGCAATTACTAGA+AGG 0.473585 7_3:-2650992 None:intergenic
TCGTGTGTTTGTGTCTGAAA+AGG 0.474236 7_3:-2651195 None:intergenic
TTCATTGAAAGTTTCAGAGC+TGG 0.482129 7_3:+2652177 Msa1089300:CDS
TTGAACGGAGGTGGAGGAGG+AGG 0.483916 7_3:-2651970 None:intergenic
TGAATTAGGTTTGAAAATGT+GGG 0.491533 7_3:-2651054 None:intergenic
GTTCTATTTGCCATATTCTG+TGG 0.492687 7_3:+2651113 Msa1089300:CDS
GCTGGCATCTTGAACGGAGG+TGG 0.497389 7_3:-2651979 None:intergenic
CTTTGAGGAAGCAGGAGATA+GGG 0.497665 7_3:+2652223 Msa1089300:CDS
TACTTCTTCATCTATATCTA+CGG 0.502911 7_3:-2652061 None:intergenic
TACACCAGTAGATCAATTCC+AGG 0.504782 7_3:-2652114 None:intergenic
AGAACCTGGAATTGATCTAC+TGG 0.506585 7_3:+2652110 Msa1089300:CDS
ATGAGCGGCTGAGGCGGCGG+CGG 0.506657 7_3:-2650932 None:intergenic
GAATAGAACAAATCATGAAA+AGG 0.514757 7_3:-2651805 None:intergenic
TTTCAGAGCTGGTTTAAGGA+TGG 0.515914 7_3:+2652188 Msa1089300:CDS
TTTGTTATCAACACCTGGGT+TGG 0.516139 7_3:-2652145 None:intergenic
GGCATCTTGAACGGAGGTGG+AGG 0.520376 7_3:-2651976 None:intergenic
GAAGAAGGCATAGTAGTAGC+AGG 0.520460 7_3:-2651769 None:intergenic
AGTATGAGCGGCTGAGGCGG+CGG 0.526310 7_3:-2650935 None:intergenic
GTGGAGTTACCAACCATTAG+TGG 0.532115 7_3:+2652084 Msa1089300:CDS
CATGCTGGCATCTTGAACGG+AGG 0.535787 7_3:-2651982 None:intergenic
TGCACCTTGAACTTCCATGC+TGG 0.537840 7_3:-2651997 None:intergenic
ACCATTAGTGGTAAAGAACC+TGG 0.541647 7_3:+2652096 Msa1089300:CDS
GCAGTAAACACATCTTTGAA+AGG 0.544318 7_3:+2651484 Msa1089300:CDS
GATGCCAGCATGGAAGTTCA+AGG 0.546768 7_3:+2651993 Msa1089300:CDS
AAAGTGAGTATGAGCGGCTG+AGG 0.547046 7_3:-2650941 None:intergenic
TTCCATGCTGGCATCTTGAA+CGG 0.547115 7_3:-2651985 None:intergenic
TGGCAAATAGAACAAGCAAA+AGG 0.553715 7_3:-2651103 None:intergenic
CCAAAACCAAATGGAAGGAG+AGG 0.555034 7_3:+2650866 None:intergenic
AGATATAGATGAAGAAGTAG+TGG 0.561181 7_3:+2652065 Msa1089300:CDS
GGAAAGAACAAGAAGAAGCA+AGG 0.563591 7_3:+2651505 Msa1089300:CDS
AGAAGAAGAAGAAAGCATCA+AGG 0.566307 7_3:+2651453 Msa1089300:CDS
GCATGGAAGTTCAAGGTGCA+GGG 0.568539 7_3:+2652000 Msa1089300:CDS
GTGAGTATGAGCGGCTGAGG+CGG 0.568620 7_3:-2650938 None:intergenic
CCAGGTGTTGATAACAAAGC+TGG 0.571763 7_3:+2652150 Msa1089300:CDS
CTCCGTTCAAGATGCCAGCA+TGG 0.573589 7_3:+2651983 Msa1089300:CDS
GGTGGAGGTATTGAGTTCAA+TGG 0.573725 7_3:-2651946 None:intergenic
GAAGTGAAAGAGTGCAATGT+AGG 0.576308 7_3:-2651032 None:intergenic
AAAATGCAACAATCTTTGAA+AGG 0.577936 7_3:+2651622 Msa1089300:CDS
GGTTCTTTACCACTAATGGT+TGG 0.578209 7_3:-2652093 None:intergenic
AGAGTATGAGAAACCAAACC+TGG 0.583436 7_3:+2651220 Msa1089300:CDS
TCAAACCAAAACCAAATGGA+AGG 0.610532 7_3:+2650861 None:intergenic
CAGCTTTGTTATCAACACCT+GGG 0.618684 7_3:-2652149 None:intergenic
TGAGGAAGCAGGAGATAGGG+AGG 0.629953 7_3:+2652226 Msa1089300:CDS
CCCTTCTGGCTGCAAAACAG+CGG 0.638122 7_3:+2650903 Msa1089300:CDS
TGATAACAGTGCCAGAGCTG+AGG 0.639850 7_3:-2650965 None:intergenic
TGAGGAAAAGTGAGTATGAG+CGG 0.649948 7_3:-2650947 None:intergenic
GTGTATCCAAATCCCAACCC+AGG 0.669447 7_3:+2652132 Msa1089300:CDS
GCTGAAACTTGATGTTGTGA+CGG 0.683300 7_3:-2651865 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAATTCAGTAAAAAAGAGTT+GGG + chr7_3:2651070-2651089 Msa1089300:CDS 20.0%
!! TATGATTATGTCAAAAACAA+AGG + chr7_3:2651888-2651907 Msa1089300:CDS 20.0%
!! TAATTCAGTAAAAAAGAGTT+GGG + chr7_3:2651070-2651089 Msa1089300:CDS 20.0%
!! TATGATTATGTCAAAAACAA+AGG + chr7_3:2651888-2651907 Msa1089300:CDS 20.0%
! TGAATTAGGTTTGAAAATGT+GGG - chr7_3:2651057-2651076 None:intergenic 25.0%
!!! CAACTCTTTTTTACTGAATT+AGG - chr7_3:2651071-2651090 None:intergenic 25.0%
! CTAATTCAGTAAAAAAGAGT+TGG + chr7_3:2651069-2651088 Msa1089300:CDS 25.0%
! AAGATAGAACTTCATATAAC+AGG + chr7_3:2651288-2651307 Msa1089300:CDS 25.0%
! TGCAGAAAGAAAGAATAAAA+AGG + chr7_3:2651579-2651598 Msa1089300:CDS 25.0%
! TAAAAAGGTAATTGTAACGA+AGG + chr7_3:2651594-2651613 Msa1089300:CDS 25.0%
! AAAATGCAACAATCTTTGAA+AGG + chr7_3:2651622-2651641 Msa1089300:CDS 25.0%
! GAATAGAACAAATCATGAAA+AGG - chr7_3:2651808-2651827 None:intergenic 25.0%
! TACTTCTTCATCTATATCTA+CGG - chr7_3:2652064-2652083 None:intergenic 25.0%
! TGAATTAGGTTTGAAAATGT+GGG - chr7_3:2651057-2651076 None:intergenic 25.0%
!!! CAACTCTTTTTTACTGAATT+AGG - chr7_3:2651071-2651090 None:intergenic 25.0%
! CTAATTCAGTAAAAAAGAGT+TGG + chr7_3:2651069-2651088 Msa1089300:CDS 25.0%
! AAGATAGAACTTCATATAAC+AGG + chr7_3:2651288-2651307 Msa1089300:CDS 25.0%
! TGCAGAAAGAAAGAATAAAA+AGG + chr7_3:2651579-2651598 Msa1089300:CDS 25.0%
! TAAAAAGGTAATTGTAACGA+AGG + chr7_3:2651594-2651613 Msa1089300:CDS 25.0%
! AAAATGCAACAATCTTTGAA+AGG + chr7_3:2651622-2651641 Msa1089300:CDS 25.0%
! GAATAGAACAAATCATGAAA+AGG - chr7_3:2651808-2651827 None:intergenic 25.0%
! TACTTCTTCATCTATATCTA+CGG - chr7_3:2652064-2652083 None:intergenic 25.0%
CTGAATTAGGTTTGAAAATG+TGG - chr7_3:2651058-2651077 None:intergenic 30.0%
TAGAACAAGCAAAAGGTTAA+GGG - chr7_3:2651099-2651118 None:intergenic 30.0%
ATAGAACAAGCAAAAGGTTA+AGG - chr7_3:2651100-2651119 None:intergenic 30.0%
!!! CATTGTTGTTGTTTTTGCTA+AGG - chr7_3:2651142-2651161 None:intergenic 30.0%
!! GGTTTGATTTTGATCTTCAT+AGG - chr7_3:2651177-2651196 None:intergenic 30.0%
TTAAGTTTAAGTCCAATCCA+CGG - chr7_3:2651415-2651434 None:intergenic 30.0%
TATGTCAAAAACAAAGGATG+AGG + chr7_3:2651894-2651913 Msa1089300:CDS 30.0%
AGATATAGATGAAGAAGTAG+TGG + chr7_3:2652065-2652084 Msa1089300:CDS 30.0%
TGGAGAAAATGAATTCTTTG+AGG + chr7_3:2652208-2652227 Msa1089300:CDS 30.0%
!!! TTAATGGTTTTGGTGATGAA+GGG - chr7_3:2652268-2652287 None:intergenic 30.0%
CTGAATTAGGTTTGAAAATG+TGG - chr7_3:2651058-2651077 None:intergenic 30.0%
TAGAACAAGCAAAAGGTTAA+GGG - chr7_3:2651099-2651118 None:intergenic 30.0%
ATAGAACAAGCAAAAGGTTA+AGG - chr7_3:2651100-2651119 None:intergenic 30.0%
!!! CATTGTTGTTGTTTTTGCTA+AGG - chr7_3:2651142-2651161 None:intergenic 30.0%
!! GGTTTGATTTTGATCTTCAT+AGG - chr7_3:2651177-2651196 None:intergenic 30.0%
TTAAGTTTAAGTCCAATCCA+CGG - chr7_3:2651415-2651434 None:intergenic 30.0%
TATGTCAAAAACAAAGGATG+AGG + chr7_3:2651894-2651913 Msa1089300:CDS 30.0%
AGATATAGATGAAGAAGTAG+TGG + chr7_3:2652065-2652084 Msa1089300:CDS 30.0%
TGGAGAAAATGAATTCTTTG+AGG + chr7_3:2652208-2652227 Msa1089300:CDS 30.0%
!!! TTAATGGTTTTGGTGATGAA+GGG - chr7_3:2652268-2652287 None:intergenic 30.0%
AAGAAATTTCTTCACCCTTC+TGG + chr7_3:2650889-2650908 Msa1089300:CDS 35.0%
ATGCAAGTGCAATTACTAGA+AGG - chr7_3:2650995-2651014 None:intergenic 35.0%
TGGCAAATAGAACAAGCAAA+AGG - chr7_3:2651106-2651125 None:intergenic 35.0%
GTTCTATTTGCCATATTCTG+TGG + chr7_3:2651113-2651132 Msa1089300:CDS 35.0%
! TTTTGATCTTCATAGGAACG+TGG - chr7_3:2651170-2651189 None:intergenic 35.0%
GAACTTCATATAACAGGTTG+AGG + chr7_3:2651294-2651313 Msa1089300:intron 35.0%
!! AGAAGAAGAAGAAAGCATCA+AGG + chr7_3:2651453-2651472 Msa1089300:CDS 35.0%
GCAGTAAACACATCTTTGAA+AGG + chr7_3:2651484-2651503 Msa1089300:CDS 35.0%
TGTCTATGCTTCTTCTTCTT+TGG - chr7_3:2651709-2651728 None:intergenic 35.0%
! GAGGATTTTTCTGTGATTAC+CGG + chr7_3:2651913-2651932 Msa1089300:CDS 35.0%
TTCATTGAAAGTTTCAGAGC+TGG + chr7_3:2652177-2652196 Msa1089300:CDS 35.0%
! AAAGTTTCAGAGCTGGTTTA+AGG + chr7_3:2652184-2652203 Msa1089300:CDS 35.0%
! AATGAATTCTTTGAGGAAGC+AGG + chr7_3:2652215-2652234 Msa1089300:CDS 35.0%
AAGAAATTTCTTCACCCTTC+TGG + chr7_3:2650889-2650908 Msa1089300:CDS 35.0%
ATGCAAGTGCAATTACTAGA+AGG - chr7_3:2650995-2651014 None:intergenic 35.0%
TGGCAAATAGAACAAGCAAA+AGG - chr7_3:2651106-2651125 None:intergenic 35.0%
GTTCTATTTGCCATATTCTG+TGG + chr7_3:2651113-2651132 Msa1089300:CDS 35.0%
! TTTTGATCTTCATAGGAACG+TGG - chr7_3:2651170-2651189 None:intergenic 35.0%
GAACTTCATATAACAGGTTG+AGG + chr7_3:2651294-2651313 Msa1089300:intron 35.0%
!! AGAAGAAGAAGAAAGCATCA+AGG + chr7_3:2651453-2651472 Msa1089300:CDS 35.0%
GCAGTAAACACATCTTTGAA+AGG + chr7_3:2651484-2651503 Msa1089300:CDS 35.0%
TGTCTATGCTTCTTCTTCTT+TGG - chr7_3:2651709-2651728 None:intergenic 35.0%
! GAGGATTTTTCTGTGATTAC+CGG + chr7_3:2651913-2651932 Msa1089300:CDS 35.0%
TTCATTGAAAGTTTCAGAGC+TGG + chr7_3:2652177-2652196 Msa1089300:CDS 35.0%
! AAAGTTTCAGAGCTGGTTTA+AGG + chr7_3:2652184-2652203 Msa1089300:CDS 35.0%
! AATGAATTCTTTGAGGAAGC+AGG + chr7_3:2652215-2652234 Msa1089300:CDS 35.0%
TGAGGAAAAGTGAGTATGAG+CGG - chr7_3:2650950-2650969 None:intergenic 40.0%
! GAAGTGAAAGAGTGCAATGT+AGG - chr7_3:2651035-2651054 None:intergenic 40.0%
TCGTGTGTTTGTGTCTGAAA+AGG - chr7_3:2651198-2651217 None:intergenic 40.0%
AGAGTATGAGAAACCAAACC+TGG + chr7_3:2651220-2651239 Msa1089300:CDS 40.0%
GAGTACTCATACCAAAAACG+TGG - chr7_3:2651266-2651285 None:intergenic 40.0%
TTAACTCATACCCAGATCTC+CGG + chr7_3:2651321-2651340 Msa1089300:intron 40.0%
TTAAGTCCAATCCACGGTAA+CGG - chr7_3:2651409-2651428 None:intergenic 40.0%
GGAAAGAACAAGAAGAAGCA+AGG + chr7_3:2651505-2651524 Msa1089300:CDS 40.0%
CTATGCTTCTTCTTCTTTGG+AGG - chr7_3:2651706-2651725 None:intergenic 40.0%
GGAGAAGAAGAAGAAGAAGA+AGG - chr7_3:2651787-2651806 None:intergenic 40.0%
GCTGAAACTTGATGTTGTGA+CGG - chr7_3:2651868-2651887 None:intergenic 40.0%
GGTTCTTTACCACTAATGGT+TGG - chr7_3:2652096-2652115 None:intergenic 40.0%
ACCATTAGTGGTAAAGAACC+TGG + chr7_3:2652096-2652115 Msa1089300:CDS 40.0%
TCCAGGTTCTTTACCACTAA+TGG - chr7_3:2652100-2652119 None:intergenic 40.0%
AGAACCTGGAATTGATCTAC+TGG + chr7_3:2652110-2652129 Msa1089300:CDS 40.0%
TACACCAGTAGATCAATTCC+AGG - chr7_3:2652117-2652136 None:intergenic 40.0%
TTGTTATCAACACCTGGGTT+GGG - chr7_3:2652147-2652166 None:intergenic 40.0%
! TTTGTTATCAACACCTGGGT+TGG - chr7_3:2652148-2652167 None:intergenic 40.0%
!! CAGCTTTGTTATCAACACCT+GGG - chr7_3:2652152-2652171 None:intergenic 40.0%
! TTTCAGAGCTGGTTTAAGGA+TGG + chr7_3:2652188-2652207 Msa1089300:CDS 40.0%
ATAGGGAGGTCTAATCTCTA+TGG + chr7_3:2652240-2652259 Msa1089300:CDS 40.0%
TGAGGAAAAGTGAGTATGAG+CGG - chr7_3:2650950-2650969 None:intergenic 40.0%
! GAAGTGAAAGAGTGCAATGT+AGG - chr7_3:2651035-2651054 None:intergenic 40.0%
TCGTGTGTTTGTGTCTGAAA+AGG - chr7_3:2651198-2651217 None:intergenic 40.0%
AGAGTATGAGAAACCAAACC+TGG + chr7_3:2651220-2651239 Msa1089300:CDS 40.0%
GAGTACTCATACCAAAAACG+TGG - chr7_3:2651266-2651285 None:intergenic 40.0%
TTAACTCATACCCAGATCTC+CGG + chr7_3:2651321-2651340 Msa1089300:intron 40.0%
TTAAGTCCAATCCACGGTAA+CGG - chr7_3:2651409-2651428 None:intergenic 40.0%
GGAAAGAACAAGAAGAAGCA+AGG + chr7_3:2651505-2651524 Msa1089300:CDS 40.0%
CTATGCTTCTTCTTCTTTGG+AGG - chr7_3:2651706-2651725 None:intergenic 40.0%
GGAGAAGAAGAAGAAGAAGA+AGG - chr7_3:2651787-2651806 None:intergenic 40.0%
GCTGAAACTTGATGTTGTGA+CGG - chr7_3:2651868-2651887 None:intergenic 40.0%
GGTTCTTTACCACTAATGGT+TGG - chr7_3:2652096-2652115 None:intergenic 40.0%
ACCATTAGTGGTAAAGAACC+TGG + chr7_3:2652096-2652115 Msa1089300:CDS 40.0%
TCCAGGTTCTTTACCACTAA+TGG - chr7_3:2652100-2652119 None:intergenic 40.0%
AGAACCTGGAATTGATCTAC+TGG + chr7_3:2652110-2652129 Msa1089300:CDS 40.0%
TACACCAGTAGATCAATTCC+AGG - chr7_3:2652117-2652136 None:intergenic 40.0%
TTGTTATCAACACCTGGGTT+GGG - chr7_3:2652147-2652166 None:intergenic 40.0%
! TTTGTTATCAACACCTGGGT+TGG - chr7_3:2652148-2652167 None:intergenic 40.0%
!! CAGCTTTGTTATCAACACCT+GGG - chr7_3:2652152-2652171 None:intergenic 40.0%
! TTTCAGAGCTGGTTTAAGGA+TGG + chr7_3:2652188-2652207 Msa1089300:CDS 40.0%
ATAGGGAGGTCTAATCTCTA+TGG + chr7_3:2652240-2652259 Msa1089300:CDS 40.0%
!! TACTCACTTTTCCTCAGCTC+TGG + chr7_3:2650954-2650973 Msa1089300:CDS 45.0%
GCTAAGGAAGCCACAGAATA+TGG - chr7_3:2651126-2651145 None:intergenic 45.0%
!! TCTGTTTCTGGTTCCAGGTT+TGG - chr7_3:2651236-2651255 None:intergenic 45.0%
!! CTGTTTCTGTTTCTGGTTCC+AGG - chr7_3:2651241-2651260 None:intergenic 45.0%
! CAGAAACAGCACCACGTTTT+TGG + chr7_3:2651252-2651271 Msa1089300:CDS 45.0%
ACTCATGTTAACCGTTACCG+TGG + chr7_3:2651395-2651414 Msa1089300:intron 45.0%
TGTTAACCGTTACCGTGGAT+TGG + chr7_3:2651400-2651419 Msa1089300:intron 45.0%
! GAAGAAGGCATAGTAGTAGC+AGG - chr7_3:2651772-2651791 None:intergenic 45.0%
GTTCAATGGCGACTCATTAC+CGG - chr7_3:2651935-2651954 None:intergenic 45.0%
!! GGTGGAGGTATTGAGTTCAA+TGG - chr7_3:2651949-2651968 None:intergenic 45.0%
TTCCATGCTGGCATCTTGAA+CGG - chr7_3:2651988-2652007 None:intergenic 45.0%
GTGGAGTTACCAACCATTAG+TGG + chr7_3:2652084-2652103 Msa1089300:CDS 45.0%
!! CCAGCTTTGTTATCAACACC+TGG - chr7_3:2652153-2652172 None:intergenic 45.0%
!! CCAGGTGTTGATAACAAAGC+TGG + chr7_3:2652150-2652169 Msa1089300:CDS 45.0%
! TCTTTGAGGAAGCAGGAGAT+AGG + chr7_3:2652222-2652241 Msa1089300:CDS 45.0%
! CTTTGAGGAAGCAGGAGATA+GGG + chr7_3:2652223-2652242 Msa1089300:CDS 45.0%
!! TACTCACTTTTCCTCAGCTC+TGG + chr7_3:2650954-2650973 Msa1089300:CDS 45.0%
GCTAAGGAAGCCACAGAATA+TGG - chr7_3:2651126-2651145 None:intergenic 45.0%
!! TCTGTTTCTGGTTCCAGGTT+TGG - chr7_3:2651236-2651255 None:intergenic 45.0%
!! CTGTTTCTGTTTCTGGTTCC+AGG - chr7_3:2651241-2651260 None:intergenic 45.0%
! CAGAAACAGCACCACGTTTT+TGG + chr7_3:2651252-2651271 Msa1089300:CDS 45.0%
ACTCATGTTAACCGTTACCG+TGG + chr7_3:2651395-2651414 Msa1089300:intron 45.0%
TGTTAACCGTTACCGTGGAT+TGG + chr7_3:2651400-2651419 Msa1089300:intron 45.0%
! GAAGAAGGCATAGTAGTAGC+AGG - chr7_3:2651772-2651791 None:intergenic 45.0%
GTTCAATGGCGACTCATTAC+CGG - chr7_3:2651935-2651954 None:intergenic 45.0%
!! GGTGGAGGTATTGAGTTCAA+TGG - chr7_3:2651949-2651968 None:intergenic 45.0%
TTCCATGCTGGCATCTTGAA+CGG - chr7_3:2651988-2652007 None:intergenic 45.0%
GTGGAGTTACCAACCATTAG+TGG + chr7_3:2652084-2652103 Msa1089300:CDS 45.0%
!! CCAGCTTTGTTATCAACACC+TGG - chr7_3:2652153-2652172 None:intergenic 45.0%
!! CCAGGTGTTGATAACAAAGC+TGG + chr7_3:2652150-2652169 Msa1089300:CDS 45.0%
! TCTTTGAGGAAGCAGGAGAT+AGG + chr7_3:2652222-2652241 Msa1089300:CDS 45.0%
! CTTTGAGGAAGCAGGAGATA+GGG + chr7_3:2652223-2652242 Msa1089300:CDS 45.0%
AAAGTGAGTATGAGCGGCTG+AGG - chr7_3:2650944-2650963 None:intergenic 50.0%
TGATAACAGTGCCAGAGCTG+AGG - chr7_3:2650968-2650987 None:intergenic 50.0%
!! CGTGGTGCTGTTTCTGTTTC+TGG - chr7_3:2651248-2651267 None:intergenic 50.0%
AAGACTCTTGCCGGAGATCT+GGG - chr7_3:2651334-2651353 None:intergenic 50.0%
AAAGACTCTTGCCGGAGATC+TGG - chr7_3:2651335-2651354 None:intergenic 50.0%
ATCTCCGGCAAGAGTCTTTG+TGG + chr7_3:2651336-2651355 Msa1089300:intron 50.0%
TCTCCGGCAAGAGTCTTTGT+GGG + chr7_3:2651337-2651356 Msa1089300:intron 50.0%
AAATCGCCACCGTTCATCTC+CGG - chr7_3:2651366-2651385 None:intergenic 50.0%
GATGCCAGCATGGAAGTTCA+AGG + chr7_3:2651993-2652012 Msa1089300:CDS 50.0%
TGCACCTTGAACTTCCATGC+TGG - chr7_3:2652000-2652019 None:intergenic 50.0%
AGCATGGAAGTTCAAGGTGC+AGG + chr7_3:2651999-2652018 Msa1089300:CDS 50.0%
GCATGGAAGTTCAAGGTGCA+GGG + chr7_3:2652000-2652019 Msa1089300:CDS 50.0%
GTGTATCCAAATCCCAACCC+AGG + chr7_3:2652132-2652151 Msa1089300:CDS 50.0%
! TCAACACCTGGGTTGGGATT+TGG - chr7_3:2652141-2652160 None:intergenic 50.0%
AAAGTGAGTATGAGCGGCTG+AGG - chr7_3:2650944-2650963 None:intergenic 50.0%
TGATAACAGTGCCAGAGCTG+AGG - chr7_3:2650968-2650987 None:intergenic 50.0%
!! CGTGGTGCTGTTTCTGTTTC+TGG - chr7_3:2651248-2651267 None:intergenic 50.0%
AAGACTCTTGCCGGAGATCT+GGG - chr7_3:2651334-2651353 None:intergenic 50.0%
AAAGACTCTTGCCGGAGATC+TGG - chr7_3:2651335-2651354 None:intergenic 50.0%
ATCTCCGGCAAGAGTCTTTG+TGG + chr7_3:2651336-2651355 Msa1089300:intron 50.0%
TCTCCGGCAAGAGTCTTTGT+GGG + chr7_3:2651337-2651356 Msa1089300:intron 50.0%
AAATCGCCACCGTTCATCTC+CGG - chr7_3:2651366-2651385 None:intergenic 50.0%
GATGCCAGCATGGAAGTTCA+AGG + chr7_3:2651993-2652012 Msa1089300:CDS 50.0%
TGCACCTTGAACTTCCATGC+TGG - chr7_3:2652000-2652019 None:intergenic 50.0%
AGCATGGAAGTTCAAGGTGC+AGG + chr7_3:2651999-2652018 Msa1089300:CDS 50.0%
GCATGGAAGTTCAAGGTGCA+GGG + chr7_3:2652000-2652019 Msa1089300:CDS 50.0%
GTGTATCCAAATCCCAACCC+AGG + chr7_3:2652132-2652151 Msa1089300:CDS 50.0%
! TCAACACCTGGGTTGGGATT+TGG - chr7_3:2652141-2652160 None:intergenic 50.0%
!! CCGCTGTTTTGCAGCCAGAA+GGG - chr7_3:2650906-2650925 None:intergenic 55.0%
! CCCTTCTGGCTGCAAAACAG+CGG + chr7_3:2650903-2650922 Msa1089300:CDS 55.0%
CGACCCACAAAGACTCTTGC+CGG - chr7_3:2651343-2651362 None:intergenic 55.0%
CAAGAGTCTTTGTGGGTCGC+CGG + chr7_3:2651344-2651363 Msa1089300:intron 55.0%
ATCTTGAACGGAGGTGGAGG+AGG - chr7_3:2651976-2651995 None:intergenic 55.0%
CATGCTGGCATCTTGAACGG+AGG - chr7_3:2651985-2652004 None:intergenic 55.0%
CTCCGTTCAAGATGCCAGCA+TGG + chr7_3:2651983-2652002 Msa1089300:CDS 55.0%
TGAGGAAGCAGGAGATAGGG+AGG + chr7_3:2652226-2652245 Msa1089300:CDS 55.0%
!! CCGCTGTTTTGCAGCCAGAA+GGG - chr7_3:2650906-2650925 None:intergenic 55.0%
! CCCTTCTGGCTGCAAAACAG+CGG + chr7_3:2650903-2650922 Msa1089300:CDS 55.0%
CGACCCACAAAGACTCTTGC+CGG - chr7_3:2651343-2651362 None:intergenic 55.0%
CAAGAGTCTTTGTGGGTCGC+CGG + chr7_3:2651344-2651363 Msa1089300:intron 55.0%
ATCTTGAACGGAGGTGGAGG+AGG - chr7_3:2651976-2651995 None:intergenic 55.0%
CATGCTGGCATCTTGAACGG+AGG - chr7_3:2651985-2652004 None:intergenic 55.0%
CTCCGTTCAAGATGCCAGCA+TGG + chr7_3:2651983-2652002 Msa1089300:CDS 55.0%
TGAGGAAGCAGGAGATAGGG+AGG + chr7_3:2652226-2652245 Msa1089300:CDS 55.0%
!! GCCGCTGTTTTGCAGCCAGA+AGG - chr7_3:2650907-2650926 None:intergenic 60.0%
GTGAGTATGAGCGGCTGAGG+CGG - chr7_3:2650941-2650960 None:intergenic 60.0%
TGTGGGTCGCCGGAGATGAA+CGG + chr7_3:2651354-2651373 Msa1089300:intron 60.0%
TTGAACGGAGGTGGAGGAGG+AGG - chr7_3:2651973-2651992 None:intergenic 60.0%
GGCATCTTGAACGGAGGTGG+AGG - chr7_3:2651979-2651998 None:intergenic 60.0%
GCTGGCATCTTGAACGGAGG+TGG - chr7_3:2651982-2652001 None:intergenic 60.0%
!! GCCGCTGTTTTGCAGCCAGA+AGG - chr7_3:2650907-2650926 None:intergenic 60.0%
GTGAGTATGAGCGGCTGAGG+CGG - chr7_3:2650941-2650960 None:intergenic 60.0%
TGTGGGTCGCCGGAGATGAA+CGG + chr7_3:2651354-2651373 Msa1089300:intron 60.0%
TTGAACGGAGGTGGAGGAGG+AGG - chr7_3:2651973-2651992 None:intergenic 60.0%
GGCATCTTGAACGGAGGTGG+AGG - chr7_3:2651979-2651998 None:intergenic 60.0%
GCTGGCATCTTGAACGGAGG+TGG - chr7_3:2651982-2652001 None:intergenic 60.0%
AGTATGAGCGGCTGAGGCGG+CGG - chr7_3:2650938-2650957 None:intergenic 65.0%
AACGGAGGTGGAGGAGGAGG+CGG - chr7_3:2651970-2651989 None:intergenic 65.0%
AGTATGAGCGGCTGAGGCGG+CGG - chr7_3:2650938-2650957 None:intergenic 65.0%
AACGGAGGTGGAGGAGGAGG+CGG - chr7_3:2651970-2651989 None:intergenic 65.0%
GGGTCGCCGGAGATGAACGG+TGG + chr7_3:2651357-2651376 Msa1089300:intron 70.0%
GGGTCGCCGGAGATGAACGG+TGG + chr7_3:2651357-2651376 Msa1089300:intron 70.0%
ATGAGCGGCTGAGGCGGCGG+CGG - chr7_3:2650935-2650954 None:intergenic 75.0%
GGTGGAGGAGGAGGCGGTGG+AGG - chr7_3:2651964-2651983 None:intergenic 75.0%
GGAGGTGGAGGAGGAGGCGG+TGG - chr7_3:2651967-2651986 None:intergenic 75.0%
ATGAGCGGCTGAGGCGGCGG+CGG - chr7_3:2650935-2650954 None:intergenic 75.0%
GGTGGAGGAGGAGGCGGTGG+AGG - chr7_3:2651964-2651983 None:intergenic 75.0%
GGAGGTGGAGGAGGAGGCGG+TGG - chr7_3:2651967-2651986 None:intergenic 75.0%
! GCGGCTGAGGCGGCGGCGGT+TGG - chr7_3:2650931-2650950 None:intergenic 85.0%
! GCGGCTGAGGCGGCGGCGGT+TGG - chr7_3:2650931-2650950 None:intergenic 85.0%
Chromosome Type Strat End Strand Name
chr7_3 gene 2650876 2652287 2650876 ID=Msa1089300;Name=Msa1089300
chr7_3 mRNA 2650876 2652287 2650876 ID=Msa1089300-mRNA-1;Parent=Msa1089300;Name=Msa1089300-mRNA-1;_AED=0.05;_eAED=0.06;_QI=0|0|0|1|1|1|2|0|427
chr7_3 exon 2650876 2651309 2650876 ID=Msa1089300-mRNA-1:exon:1099;Parent=Msa1089300-mRNA-1
chr7_3 exon 2651438 2652287 2651438 ID=Msa1089300-mRNA-1:exon:1100;Parent=Msa1089300-mRNA-1
chr7_3 CDS 2650876 2651309 2650876 ID=Msa1089300-mRNA-1:cds;Parent=Msa1089300-mRNA-1
chr7_3 CDS 2651438 2652287 2651438 ID=Msa1089300-mRNA-1:cds;Parent=Msa1089300-mRNA-1
Gene Sequence

>Msa1089300

ATGGAAGGAGAGGAAGAAATTTCTTCACCCTTCTGGCTGCAAAACAGCGGCGCCAACCGCCGCCGCCTCAGCCGCTCATACTCACTTTTCCTCAGCTCTGGCACTGTTATCATAGTCCTTCTAGTAATTGCACTTGCATTCATCTTAGTCATAGTTCCTACATTGCACTCTTTCACTTCCCACATTTTCAAACCTAATTCAGTAAAAAAGAGTTGGGATTCCCTTAACCTTTTGCTTGTTCTATTTGCCATATTCTGTGGCTTCCTTAGCAAAAACAACAACAATGAAAGTCCACGTTCCTATGAAGATCAAAATCAAACCTTTTCAGACACAAACACACGACAAGAGTATGAGAAACCAAACCTGGAACCAGAAACAGAAACAGCACCACGTTTTTGGTATGAGTACTCAGAAGATAGAACTTCATATAACAGAAGAAAAGAAGAAGAAGAAGAAGAAGAAAGCATCAAGGACATTATTGCAGTAAACACATCTTTGAAAGGAAAGAACAAGAAGAAGCAAGGATCAGAAACGCAGCAATCTGAAACAATTGAGAAAACGAAAAATAACACTGCTGCAGAAAGAAAGAATAAAAAGGTAATTGTAACGAAGGATGAGAAAATGCAACAATCTTTGAAAGGAAAGAAGAAACATAGACATAAAAGCGTTGAAAATTTTCAGAACATTATGAATTCTGAACCTCCAAAGAAGAAGAAGCATAGACATAAAAGCTTTGAAAATTTTCAGAGCATTCTGAATTCTGAACCTGCTACTACTATGCCTTCTTCTTCTTCTTCTTCTCCTTTTCATGATTTGTTCTATTCTAAGAAAAACAAACAGAAGAAACTTAACTCTGTTTCGCCGTCACAACATCAAGTTTCAGCTATGATTATGTCAAAAACAAAGGATGAGGATTTTTCTGTGATTACCGGTAATGAGTCGCCATTGAACTCAATACCTCCACCGCCTCCTCCTCCACCTCCGTTCAAGATGCCAGCATGGAAGTTCAAGGTGCAGGGTGACTTTGTTAGAATAGATAGCATTAGTAGTTCAAGTTCCGTAGATATAGATGAAGAAGTAGTGGAGTTACCAACCATTAGTGGTAAAGAACCTGGAATTGATCTACTGGTGTATCCAAATCCCAACCCAGGTGTTGATAACAAAGCTGGTAGTTTCATTGAAAGTTTCAGAGCTGGTTTAAGGATGGAGAAAATGAATTCTTTGAGGAAGCAGGAGATAGGGAGGTCTAATCTCTATGGTACCCTTCATCACCAAAACCATTAA

Protein sequence

>Msa1089300

MEGEEEISSPFWLQNSGANRRRLSRSYSLFLSSGTVIIVLLVIALAFILVIVPTLHSFTSHIFKPNSVKKSWDSLNLLLVLFAIFCGFLSKNNNNESPRSYEDQNQTFSDTNTRQEYEKPNLEPETETAPRFWYEYSEDRTSYNRRKEEEEEEESIKDIIAVNTSLKGKNKKKQGSETQQSETIEKTKNNTAAERKNKKVIVTKDEKMQQSLKGKKKHRHKSVENFQNIMNSEPPKKKKHRHKSFENFQSILNSEPATTMPSSSSSSPFHDLFYSKKNKQKKLNSVSPSQHQVSAMIMSKTKDEDFSVITGNESPLNSIPPPPPPPPPFKMPAWKFKVQGDFVRIDSISSSSSVDIDEEVVELPTISGKEPGIDLLVYPNPNPGVDNKAGSFIESFRAGLRMEKMNSLRKQEIGRSNLYGTLHHQNH*