AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1455940

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1455940 MtrunA17_Chr8g0372601 98.795 332 4 0 1 332 1 332 0.0 681
Msa1455940 MtrunA17_Chr5g0404721 81.212 330 62 0 1 330 1 330 0.0 550
Msa1455940 MtrunA17_Chr1g0155611 62.583 302 112 1 30 330 46 347 3.40e-132 380
Msa1455940 MtrunA17_Chr5g0400331 55.346 318 128 5 23 330 18 331 1.61e-115 337
Msa1455940 MtrunA17_Chr3g0114451 55.814 301 125 2 30 330 26 318 6.26e-109 320
Msa1455940 MtrunA17_Chr7g0258811 48.632 329 163 3 4 330 47 371 9.46e-108 319
Msa1455940 MtrunA17_Chr2g0320071 48.485 330 157 3 1 330 1 317 9.85e-108 317
Msa1455940 MtrunA17_Chr4g0013171 50.904 332 150 5 1 330 1 321 2.00e-107 316
Msa1455940 MtrunA17_Chr2g0320031 47.273 330 163 2 1 330 1 319 2.87e-107 316
Msa1455940 MtrunA17_Chr4g0068621 50.164 305 148 2 27 330 35 336 3.22e-107 316
Msa1455940 MtrunA17_Chr2g0299691 52.244 312 143 2 24 331 50 359 3.75e-107 317
Msa1455940 MtrunA17_Chr2g0292251 49.835 303 151 1 30 331 28 330 5.22e-106 314
Msa1455940 MtrunA17_Chr2g0292241 46.828 331 170 2 2 331 6 331 6.01e-106 313
Msa1455940 MtrunA17_Chr2g0320061 48.113 318 158 1 13 330 8 318 6.76e-106 312
Msa1455940 MtrunA17_Chr2g0292181 49.505 303 152 1 30 331 38 340 8.05e-106 313
Msa1455940 MtrunA17_Chr2g0292091 47.826 322 166 2 11 330 4 325 3.33e-105 311
Msa1455940 MtrunA17_Chr3g0106921 50.987 304 138 4 30 330 25 320 4.17e-105 310
Msa1455940 MtrunA17_Chr7g0244461 49.045 314 151 3 18 330 7 312 9.31e-105 309
Msa1455940 MtrunA17_Chr2g0320051 49.834 301 144 1 30 330 25 318 1.47e-104 309
Msa1455940 MtrunA17_Chr2g0292211 46.224 331 172 2 2 331 17 342 2.27e-104 310
Msa1455940 MtrunA17_Chr4g0013181 54.181 299 127 4 34 330 63 353 2.63e-104 309
Msa1455940 MtrunA17_Chr2g0291751 48.160 326 164 3 6 330 9 330 3.06e-104 309
Msa1455940 MtrunA17_Chr2g0320101 48.742 318 155 2 13 330 8 317 3.23e-104 308
Msa1455940 MtrunA17_Chr5g0438021 51.815 303 136 3 30 330 31 325 4.16e-104 308
Msa1455940 MtrunA17_Chr1g0175561 50.323 310 145 3 30 330 17 326 5.52e-104 308
Msa1455940 MtrunA17_Chr2g0292101 47.500 320 166 2 13 330 7 326 9.82e-104 308
Msa1455940 MtrunA17_Chr4g0043391 47.112 329 157 4 5 330 10 324 2.67e-103 306
Msa1455940 MtrunA17_Chr2g0292111 49.013 304 154 1 28 330 27 330 4.59e-103 306
Msa1455940 MtrunA17_Chr2g0292291 48.012 327 161 3 14 331 7 333 1.49e-102 305
Msa1455940 MtrunA17_Chr2g0292151 47.401 327 165 2 11 330 4 330 6.38e-102 303
Msa1455940 MtrunA17_Chr3g0129051 48.276 319 155 3 11 327 9 319 8.16e-102 302
Msa1455940 MtrunA17_Chr4g0038171 46.970 330 158 4 4 330 6 321 1.14e-101 301
Msa1455940 MtrunA17_Chr2g0292271 49.338 302 152 1 30 330 29 330 1.61e-101 302
Msa1455940 MtrunA17_Chr4g0070951 50.000 314 152 2 21 331 19 330 1.79e-101 301
Msa1455940 MtrunA17_Chr2g0320091 49.669 302 143 3 30 330 25 318 1.72e-100 298
Msa1455940 MtrunA17_Chr5g0432351 51.475 305 136 5 30 330 25 321 3.97e-100 298
Msa1455940 MtrunA17_Chr5g0432441 50.814 307 139 4 28 330 28 326 2.67e-99 296
Msa1455940 MtrunA17_Chr4g0038151 46.646 328 158 5 6 330 8 321 3.50e-99 295
Msa1455940 MtrunA17_Chr3g0129061 49.689 322 152 3 11 330 9 322 4.12e-99 295
Msa1455940 MtrunA17_Chr5g0432341 51.148 305 137 5 30 330 25 321 6.95e-99 295
Msa1455940 MtrunA17_Chr2g0292261 50.000 298 148 1 34 330 33 330 7.09e-99 295
Msa1455940 MtrunA17_Chr4g0013821 47.508 301 154 3 30 330 28 324 3.85e-98 293
Msa1455940 MtrunA17_Chr3g0129041 50.000 322 151 3 11 330 9 322 1.35e-97 291
Msa1455940 MtrunA17_Chr4g0038161 46.646 328 157 5 6 330 8 320 1.65e-97 291
Msa1455940 MtrunA17_Chr5g0402571 47.432 331 165 5 1 330 4 326 1.27e-96 289
Msa1455940 MtrunA17_Chr5g0432331 50.492 305 139 5 30 330 56 352 1.99e-96 289
Msa1455940 MtrunA17_Chr7g0224371 48.525 305 148 3 26 330 27 322 4.75e-96 287
Msa1455940 MtrunA17_Chr5g0402581 46.224 331 169 4 1 330 4 326 2.10e-95 286
Msa1455940 MtrunA17_Chr7g0244451 47.604 313 153 5 19 330 14 316 2.83e-95 285
Msa1455940 MtrunA17_Chr4g0013721 47.855 303 154 3 28 330 98 396 1.09e-94 287
Msa1455940 MtrunA17_Chr4g0013191 48.366 306 147 4 28 330 43 340 2.86e-94 283
Msa1455940 MtrunA17_Chr3g0106901 47.222 324 154 3 7 330 17 323 1.05e-93 281
Msa1455940 MtrunA17_Chr4g0013201 46.205 303 155 2 28 330 44 338 9.77e-93 279
Msa1455940 MtrunA17_Chr5g0421411 47.350 283 145 3 53 331 4 286 1.92e-91 274
Msa1455940 MtrunA17_Chr1g0213061 44.728 313 163 3 20 330 17 321 3.95e-90 272
Msa1455940 MtrunA17_Chr3g0107881 45.031 322 164 5 13 330 12 324 4.48e-90 272
Msa1455940 MtrunA17_Chr3g0128061 46.885 305 160 2 28 331 24 327 3.05e-88 268
Msa1455940 MtrunA17_Chr4g0076211 46.128 297 150 6 35 330 46 333 1.62e-87 266
Msa1455940 MtrunA17_Chr2g0322861 45.367 313 168 3 19 330 76 386 2.26e-87 267
Msa1455940 MtrunA17_Chr4g0024121 44.702 302 164 3 30 330 27 326 2.94e-83 255
Msa1455940 MtrunA17_Chr7g0268501 43.558 326 176 5 5 330 3 320 4.32e-82 251
Msa1455940 MtrunA17_Chr7g0268521 43.558 326 176 5 5 330 3 320 4.32e-82 251
Msa1455940 MtrunA17_Chr1g0204011 41.337 329 178 8 3 330 8 322 5.06e-80 246
Msa1455940 MtrunA17_Chr1g0164891 44.186 301 163 5 34 330 93 392 9.19e-79 245
Msa1455940 MtrunA17_Chr2g0279041 44.186 301 158 5 34 330 31 325 1.30e-78 243
Msa1455940 MtrunA17_Chr5g0405991 41.212 330 180 5 1 330 1 316 5.62e-78 241
Msa1455940 MtrunA17_Chr5g0432401 41.337 329 135 6 5 329 11 285 5.91e-77 237
Msa1455940 MtrunA17_Chr2g0296621 43.333 300 159 7 34 332 54 343 2.80e-76 238
Msa1455940 MtrunA17_Chr8g0371381 40.789 304 173 4 27 330 23 319 5.93e-76 236
Msa1455940 MtrunA17_Chr6g0477071 39.697 330 184 7 1 330 28 342 2.62e-74 232
Msa1455940 MtrunA17_Chr1g0194271 42.208 308 166 4 34 330 34 340 3.19e-74 232
Msa1455940 MtrunA17_Chr1g0194151 41.860 301 170 3 34 330 34 333 9.02e-74 231
Msa1455940 MtrunA17_Chr1g0157051 39.514 329 187 5 1 329 1 317 2.45e-73 229
Msa1455940 MtrunA17_Chr4g0063671 41.493 335 176 7 1 330 1 320 3.89e-73 229
Msa1455940 MtrunA17_Chr7g0254201 40.404 297 169 6 34 330 24 312 1.99e-72 227
Msa1455940 MtrunA17_Chr7g0254231 39.597 298 169 5 34 331 26 312 3.59e-72 226
Msa1455940 MtrunA17_Chr6g0460711 39.144 327 185 7 5 330 1 314 5.10e-72 226
Msa1455940 MtrunA17_Chr1g0188431 38.485 330 187 6 1 330 14 327 5.38e-72 226
Msa1455940 MtrunA17_Chr5g0401431 39.385 325 192 4 8 329 6 328 2.46e-71 224
Msa1455940 MtrunA17_Chr8g0364291 39.009 323 190 4 10 330 7 324 1.65e-69 219
Msa1455940 MtrunA17_Chr1g0181511 39.414 307 174 5 28 330 25 323 4.50e-69 218
Msa1455940 MtrunA17_Chr6g0467161 38.387 310 180 6 23 331 38 337 6.03e-68 216
Msa1455940 MtrunA17_Chr4g0046131 40.604 298 171 6 34 326 46 342 2.30e-66 212
Msa1455940 MtrunA17_Chr1g0181431 38.889 306 177 4 28 330 25 323 3.91e-66 211
Msa1455940 MtrunA17_Chr7g0225221 39.404 302 176 4 30 330 25 320 9.62e-66 209
Msa1455940 MtrunA17_Chr1g0148021 38.671 331 194 6 4 330 3 328 1.42e-65 209
Msa1455940 MtrunA17_Chr6g0467121 38.796 299 168 6 34 330 78 363 5.27e-65 210
Msa1455940 MtrunA17_Chr4g0075241 36.111 324 203 3 8 330 7 327 1.02e-64 207
Msa1455940 MtrunA17_Chr2g0316791 37.126 334 172 7 27 326 73 402 1.33e-64 209
Msa1455940 MtrunA17_Chr3g0136751 40.000 300 171 4 34 330 29 322 1.58e-64 207
Msa1455940 MtrunA17_Chr2g0316481 36.446 332 177 6 27 326 73 402 1.87e-64 209
Msa1455940 MtrunA17_Chr1g0197411 35.736 333 202 6 1 330 7 330 5.69e-64 206
Msa1455940 MtrunA17_Chr4g0053871 38.217 314 185 4 19 329 16 323 1.21e-63 204
Msa1455940 MtrunA17_Chr1g0181481 38.235 306 179 4 28 330 25 323 1.53e-63 204
Msa1455940 MtrunA17_Chr2g0316831 36.145 332 178 6 27 326 109 438 1.90e-63 207
Msa1455940 MtrunA17_Chr2g0278671 41.100 309 169 7 28 330 22 323 2.14e-63 204
Msa1455940 MtrunA17_Chr2g0316191 36.036 333 178 6 27 326 73 403 5.01e-63 205
Msa1455940 MtrunA17_Chr4g0072091 38.384 297 174 4 34 326 28 319 7.85e-63 202
Msa1455940 MtrunA17_Chr2g0329641 35.860 343 192 8 5 330 4 335 1.18e-62 202
Msa1455940 MtrunA17_Chr6g0467251 38.176 296 169 6 34 326 40 324 1.96e-61 199
Msa1455940 MtrunA17_Chr2g0311251 35.799 338 181 8 27 331 8 342 4.28e-60 196
Msa1455940 MtrunA17_Chr2g0279061 42.529 261 140 5 74 330 12 266 4.23e-59 191
Msa1455940 MtrunA17_Chr3g0114461 50.256 195 90 1 136 330 5 192 1.51e-58 187
Msa1455940 MtrunA17_Chr6g0451571 36.601 306 188 5 28 330 32 334 2.43e-58 191
Msa1455940 MtrunA17_Chr4g0074851 34.320 338 204 7 1 330 1 328 1.81e-57 189
Msa1455940 MtrunA17_Chr2g0311241 32.982 379 177 8 27 331 57 432 2.29e-57 191
Msa1455940 MtrunA17_Chr5g0413051 35.599 309 189 5 29 330 72 377 5.75e-54 181
Msa1455940 MtrunA17_Chr2g0292281 45.024 211 103 3 123 331 18 217 2.43e-51 170
Msa1455940 MtrunA17_Chr2g0316811 39.035 228 121 3 27 237 47 273 2.34e-46 160
Msa1455940 MtrunA17_Chr3g0114491 64.220 109 39 0 30 138 18 126 1.92e-42 144
Msa1455940 MtrunA17_Chr4g0004591 30.351 313 157 3 34 326 81 352 1.04e-39 143
Msa1455940 MtrunA17_Chr2g0316141 31.379 290 145 10 76 331 11 280 1.69e-35 130
Msa1455940 MtrunA17_Chr2g0316181 31.379 290 145 10 76 331 11 280 1.69e-35 130
Msa1455940 MtrunA17_Chr1g0181501 34.715 193 116 4 141 330 4 189 1.11e-29 112
Msa1455940 MtrunA17_Chr5g0432321 46.774 124 58 2 151 274 17 132 3.28e-28 106
Msa1455940 MtrunA17_Chr3g0104101 40.278 144 78 5 194 331 9 150 5.37e-24 95.9
Msa1455940 MtrunA17_Chr6g0468731 60.563 71 24 2 69 139 22 88 2.50e-21 87.0
Msa1455940 MtrunA17_Chr1g0181491 42.478 113 63 2 28 140 10 120 5.66e-21 87.8
Msa1455940 MtrunA17_Chr4g0013811 54.667 75 34 0 140 214 5 79 3.56e-20 83.6
Msa1455940 MtrunA17_Chr7g0254181 41.905 105 57 2 92 196 22 122 2.29e-18 80.9
Msa1455940 MtrunA17_Chr5g0432361 45.556 90 47 2 241 329 20 108 3.25e-17 76.3
Msa1455940 MtrunA17_Chr2g0316771 26.554 177 99 3 180 326 7 182 3.42e-16 75.9
Msa1455940 MtrunA17_Chr3g0137751 28.090 267 117 9 61 311 105 312 6.51e-16 77.4
Msa1455940 MtrunA17_Chr7g0254171 45.946 74 39 1 75 148 3 75 1.44e-14 69.7
Msa1455940 MtrunA17_Chr1g0196191 50.769 65 31 1 72 136 27 90 1.98e-13 67.0
Msa1455940 MtrunA17_Chr7g0268491 46.753 77 39 2 254 330 23 97 3.29e-12 62.0
Msa1455940 MtrunA17_Chr3g0124821 28.713 202 105 9 123 312 180 354 1.38e-11 65.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1455940 AT5G66390.1 75.976 333 77 2 1 330 1 333 0.0 529
Msa1455940 AT4G36430.1 68.278 331 105 0 1 331 1 331 1.39e-164 462
Msa1455940 AT2G18150.1 66.369 336 107 1 1 330 1 336 4.57e-164 461
Msa1455940 AT3G50990.1 65.244 328 109 1 8 330 14 341 4.76e-154 436
Msa1455940 AT2G18140.1 61.194 335 125 1 1 330 1 335 3.12e-148 421
Msa1455940 AT1G44970.1 64.474 304 107 1 28 330 43 346 6.70e-138 395
Msa1455940 AT2G35380.1 54.662 311 132 3 27 330 27 335 5.28e-112 329
Msa1455940 AT4G08780.1 53.443 305 139 2 30 331 24 328 5.73e-110 324
Msa1455940 AT4G08770.1 53.443 305 139 2 30 331 24 328 2.03e-109 323
Msa1455940 AT5G06720.1 52.318 302 143 1 30 330 32 333 2.93e-109 322
Msa1455940 AT3G49110.1 50.311 322 157 2 13 331 16 337 5.37e-106 314
Msa1455940 AT3G32980.1 51.111 315 150 3 21 331 21 335 1.18e-105 313
Msa1455940 AT3G49120.1 51.623 308 146 2 27 331 29 336 6.59e-104 309
Msa1455940 AT5G06730.1 49.669 302 151 1 30 330 33 334 7.83e-104 309
Msa1455940 AT2G38390.1 50.825 303 147 2 30 330 31 333 9.05e-104 308
Msa1455940 AT5G05340.1 50.165 303 141 3 30 330 30 324 2.48e-102 304
Msa1455940 AT5G19890.1 50.467 321 150 4 13 330 13 327 2.94e-101 301
Msa1455940 AT1G14550.1 46.505 329 162 4 4 330 5 321 5.39e-99 295
Msa1455940 AT2G38380.1 49.835 303 150 2 30 330 31 333 2.81e-98 294
Msa1455940 AT4G16270.1 49.664 298 146 3 34 330 54 348 2.94e-98 294
Msa1455940 AT2G22420.1 48.355 304 153 3 27 330 20 319 1.17e-97 292
Msa1455940 AT1G49570.1 51.852 297 139 3 33 326 51 346 1.47e-97 292
Msa1455940 AT5G58400.1 49.342 304 143 4 30 330 30 325 2.68e-97 291
Msa1455940 AT5G58390.1 47.401 327 153 5 7 330 6 316 1.16e-95 286
Msa1455940 AT1G68850.1 44.884 303 162 3 34 331 34 336 6.11e-92 278
Msa1455940 AT1G14540.1 42.284 324 172 2 7 330 7 315 5.96e-90 272
Msa1455940 AT3G03670.1 43.161 329 171 5 6 330 5 321 2.54e-88 268
Msa1455940 AT1G05260.1 45.215 303 163 3 30 331 26 326 6.76e-86 262
Msa1455940 AT4G11290.1 42.988 328 178 4 5 330 6 326 1.25e-85 261
Msa1455940 AT5G19880.1 42.508 327 178 4 8 330 9 329 4.93e-84 257
Msa1455940 AT2G35380.2 53.012 249 108 3 89 330 1 247 2.95e-83 252
Msa1455940 AT5G15180.1 43.396 318 171 4 13 330 21 329 3.64e-82 252
Msa1455940 AT3G21770.1 44.333 300 164 3 30 328 29 326 1.88e-80 248
Msa1455940 AT5G64120.1 43.098 297 162 5 34 330 39 328 3.42e-80 247
Msa1455940 AT1G71695.1 41.420 338 180 7 5 331 10 340 6.59e-80 248
Msa1455940 AT5G17820.1 39.091 330 184 6 1 330 1 313 4.74e-78 241
Msa1455940 AT5G42180.1 44.518 301 159 5 30 329 23 316 7.18e-78 241
Msa1455940 AT5G51890.1 39.759 332 186 7 1 330 3 322 1.35e-77 241
Msa1455940 AT5G17820.2 39.091 330 184 6 1 330 54 366 6.01e-77 240
Msa1455940 AT2G41480.1 43.046 302 161 5 34 330 33 328 1.88e-76 238
Msa1455940 AT2G39040.1 44.408 304 159 7 34 330 50 350 7.81e-76 237
Msa1455940 AT3G01190.1 42.761 297 165 4 34 330 30 321 3.91e-75 234
Msa1455940 AT5G39580.1 41.667 300 163 7 34 330 29 319 5.38e-73 229
Msa1455940 AT4G26010.1 39.617 313 174 6 19 330 11 309 6.32e-72 226
Msa1455940 AT1G05240.1 40.924 303 166 6 34 330 30 325 7.31e-72 226
Msa1455940 AT1G05250.1 40.924 303 166 6 34 330 30 325 7.31e-72 226
Msa1455940 AT4G26010.2 39.617 313 174 6 19 330 39 337 9.51e-72 226
Msa1455940 AT5G64100.1 41.472 299 165 5 34 330 41 331 1.23e-69 220
Msa1455940 AT4G33870.1 37.015 335 172 5 28 326 66 397 3.50e-68 219
Msa1455940 AT4G33420.1 40.122 329 179 8 2 330 15 325 4.82e-68 216
Msa1455940 AT4G33420.2 40.122 329 179 8 2 330 62 372 1.94e-67 216
Msa1455940 AT5G47000.1 37.730 326 193 5 7 330 13 330 4.94e-67 214
Msa1455940 AT4G37520.1 37.582 306 187 3 28 330 25 329 5.20e-67 214
Msa1455940 AT2G37130.2 39.535 301 171 5 34 330 3 296 4.23e-66 210
Msa1455940 AT5G64110.1 41.333 300 166 6 34 330 38 330 6.30e-66 211
Msa1455940 AT1G34510.1 38.608 316 179 6 16 330 8 309 8.92e-66 210
Msa1455940 AT4G37530.1 38.158 304 184 3 30 330 27 329 9.02e-66 210
Msa1455940 AT4G25980.1 38.411 302 176 5 34 330 30 326 1.02e-65 210
Msa1455940 AT4G17690.1 38.944 303 177 4 30 330 26 322 1.05e-65 210
Msa1455940 AT5G40150.1 39.016 305 178 4 28 330 30 328 1.05e-65 210
Msa1455940 AT2G37130.1 39.535 301 171 5 34 330 34 327 1.08e-65 210
Msa1455940 AT2G34060.1 39.803 304 177 5 30 328 42 344 2.42e-65 210
Msa1455940 AT1G30870.1 40.532 301 167 6 34 331 55 346 2.93e-65 210
Msa1455940 AT4G37520.2 37.255 306 185 4 28 330 25 326 2.98e-65 209
Msa1455940 AT3G28200.1 38.361 305 179 4 28 330 19 316 4.60e-65 208
Msa1455940 AT5G67400.1 38.235 306 185 3 28 330 25 329 9.52e-65 207
Msa1455940 AT1G24110.1 37.576 330 195 7 6 332 3 324 1.06e-64 207
Msa1455940 AT2G18980.1 36.637 333 198 5 1 330 1 323 1.30e-64 207
Msa1455940 AT5G22410.1 36.810 326 187 9 7 327 11 322 3.74e-64 206
Msa1455940 AT1G77100.1 39.701 335 176 11 5 330 2 319 4.05e-64 206
Msa1455940 AT5G14130.1 35.294 323 204 5 9 330 12 330 5.47e-64 206
Msa1455940 AT4G31760.1 38.390 323 189 5 10 330 12 326 7.85e-64 205
Msa1455940 AT5G14130.2 35.294 323 204 5 9 330 53 371 1.62e-63 206
Msa1455940 AT3G49960.1 37.667 300 183 3 34 330 31 329 6.18e-63 203
Msa1455940 AT2G24800.1 38.333 300 177 5 34 330 35 329 3.64e-62 201
Msa1455940 AT2G43480.1 37.338 308 180 7 28 330 36 335 1.22e-61 200
Msa1455940 AT4G30170.1 35.599 309 189 5 26 330 23 325 1.56e-59 194
Msa1455940 AT5G24070.1 36.913 298 176 6 38 330 45 335 4.43e-58 191
Msa1455940 AT4G21960.1 36.667 300 180 4 34 330 35 327 5.24e-58 190
Msa1455940 AT4G37530.2 37.945 253 154 2 30 279 27 279 1.64e-54 180
Msa1455940 AT3G17070.1 33.663 303 190 6 34 330 42 339 4.04e-49 167
Msa1455940 AT4G25980.2 46.341 164 84 3 34 197 75 234 1.41e-44 154
Msa1455940 AT5G39580.2 45.614 171 88 3 34 204 29 194 5.08e-44 151
Msa1455940 AT2G24800.2 40.933 193 108 2 34 224 35 223 2.33e-38 137
Msa1455940 AT3G17070.2 31.541 279 179 7 58 330 4 276 1.38e-35 130
Msa1455940 AT3G42570.1 39.560 91 54 1 106 195 57 147 1.44e-13 67.8
Msa1455940 AT4G08390.2 29.327 208 108 8 117 312 180 360 1.59e-12 68.2
Msa1455940 AT4G08390.5 29.327 208 108 8 117 312 180 360 1.59e-12 68.2
Msa1455940 AT4G08390.1 29.327 208 108 8 117 312 180 360 1.59e-12 68.2
Msa1455940 AT4G08390.3 29.327 208 108 8 117 312 179 359 1.62e-12 68.2

Find 74 sgRNAs with CRISPR-Local

Find 231 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTTGATCTTGTTGCTCTTTC+TGG 0.030538 tig0036760:-2135 Msa1455940:intron
TCTCATGCTTCTTTCTTTAC+TGG 0.153490 tig0036760:-3124 Msa1455940:CDS
TTGCCTCTGTCATAAGAAAA+TGG 0.161924 tig0036760:-3088 Msa1455940:CDS
TAACTTCTTTATAAAAGATA+TGG 0.312465 tig0036760:+1024 Msa1455940:intergenic
TTCTTATGACAGAGGCAAAA+AGG 0.315188 tig0036760:+3093 Msa1455940:intergenic
AGTCTAGGAAGAACAGATTT+TGG 0.315899 tig0036760:+1484 Msa1455940:intergenic
CTTGCTTGCCATTTCCAGTT+TGG 0.325339 tig0036760:+1571 Msa1455940:intergenic
TTGTCTGGAATGTGTTGTTT+GGG 0.331686 tig0036760:+2193 Msa1455940:intergenic
CCTAGAGGCACTTCCCAGTT+TGG 0.335817 tig0036760:+2270 Msa1455940:intergenic
CAATTACTTCAAGAACCTAT+TGG 0.348212 tig0036760:-1436 Msa1455940:CDS
ATTGCTAGTGTGTCCACTTT+GGG 0.356689 tig0036760:-1104 Msa1455940:three_prime_UTR
ATTGTCTGGAATGTGTTGTT+TGG 0.359012 tig0036760:+2192 Msa1455940:intergenic
AGTCATAAAACTGTGGATAA+AGG 0.363575 tig0036760:+3058 Msa1455940:intergenic
CGCACTCAATGTCCAAAATC+TGG 0.374881 tig0036760:-1513 Msa1455940:CDS
CTCTACAACCAAACTGGAAA+TGG 0.376548 tig0036760:-1579 Msa1455940:CDS
AGTCAAGGTGCACCAGCTTT+AGG 0.378431 tig0036760:-1608 Msa1455940:CDS
CACTTTGGGCAATATGACTT+TGG 0.383296 tig0036760:-1090 Msa1455940:three_prime_UTR
AGTGTCTTGTGCTGACATTC+TGG 0.388994 tig0036760:-2562 Msa1455940:CDS
CTGACTAAATTCAAACTTCA+AGG 0.398099 tig0036760:-2168 Msa1455940:CDS
TGAATTTAGTCAGGATTGTC+TGG 0.402260 tig0036760:+2178 Msa1455940:intergenic
CAAAGACTCTACAACCAAAC+TGG 0.405912 tig0036760:-1585 Msa1455940:CDS
CAAGAACCTATTGGCTTACA+AGG 0.407095 tig0036760:-1427 Msa1455940:CDS
CTTGAAGTTTGAATTTAGTC+AGG 0.409451 tig0036760:+2169 Msa1455940:intergenic
CATTGCTAGTGTGTCCACTT+TGG 0.413267 tig0036760:-1105 Msa1455940:three_prime_UTR
TGGAATGTGTTGTTTGGGGC+TGG 0.416065 tig0036760:+2198 Msa1455940:intergenic
TGCCTCTGTCATAAGAAAAT+GGG 0.416344 tig0036760:-3087 Msa1455940:CDS
TGTAGGCTGGTGGACCAAAC+TGG 0.428965 tig0036760:-2284 Msa1455940:intron
TGGGGCTGGAATGTTGTTGT+TGG 0.431670 tig0036760:+2212 Msa1455940:intergenic
CCTCTAGCTGAATTACGGTT+AGG 0.445893 tig0036760:+2639 Msa1455940:intergenic
GAAACATTAGAACAAATTGC+AGG 0.446729 tig0036760:-1251 Msa1455940:CDS
CAAATCCTCTAGCTGAATTA+CGG 0.449179 tig0036760:+2634 Msa1455940:intergenic
ATAGTCCCTTGTAAGCCAAT+AGG 0.450211 tig0036760:+1421 Msa1455940:intergenic
TATCTCCTTTGACACGTTCA+AGG 0.462062 tig0036760:-1275 Msa1455940:CDS
GTAGAGTCTTTGCCTAAAGC+TGG 0.469738 tig0036760:+1596 Msa1455940:intergenic
TGTAAAGGGAGCCACACTAT+AGG 0.470026 tig0036760:-1633 Msa1455940:intron
TGCAACAGCGTTGGCAAGGA+TGG 0.479112 tig0036760:+3002 Msa1455940:intergenic
TAATTCAGCTAGAGGATTTG+AGG 0.484271 tig0036760:-2631 Msa1455940:CDS
GAATCAAGAATCAGCTGAGT+TGG 0.487866 tig0036760:-1370 Msa1455940:CDS
TCACTAGGTGCAAGCTTAAG+TGG 0.493970 tig0036760:-2237 Msa1455940:CDS
CGCGAAGTCTATGATCAAGA+TGG 0.511590 tig0036760:-1304 Msa1455940:CDS
TTAACAATATTCTGAGCTTG+TGG 0.514680 tig0036760:+3027 Msa1455940:intergenic
ATTGCAGGGTGATTAATACT+TGG 0.516904 tig0036760:-1236 Msa1455940:CDS
CAAAGTCATATTGCCCAAAG+TGG 0.535609 tig0036760:+1091 Msa1455940:intergenic
CCTTTGCAACAGCGTTGGCA+AGG 0.536581 tig0036760:+2998 Msa1455940:intergenic
ATCTCCTTTGACACGTTCAA+GGG 0.541689 tig0036760:-1274 Msa1455940:CDS
TGGAAGCATTATTAGTGAGA+AGG 0.547651 tig0036760:-2670 Msa1455940:CDS
TCAGCACAAGACACTGTATG+AGG 0.547706 tig0036760:+2570 Msa1455940:intergenic
GGAAGCATTATTAGTGAGAA+GGG 0.552053 tig0036760:-2669 Msa1455940:CDS
AAAGAAAAGATCATTTCTCT+CGG 0.552769 tig0036760:+1335 Msa1455940:intergenic
TTGTTGGTGTGACATAGTCT+AGG 0.552976 tig0036760:+1469 Msa1455940:intergenic
TTTCCCCTTGAACGTGTCAA+AGG 0.555651 tig0036760:+1270 Msa1455940:intergenic
CCTTGCCAACGCTGTTGCAA+AGG 0.555903 tig0036760:-2998 Msa1455940:CDS
CCAAACTGGGAAGTGCCTCT+AGG 0.565559 tig0036760:-2270 Msa1455940:CDS
GCGAAGTCTATGATCAAGAT+GGG 0.567884 tig0036760:-1303 Msa1455940:CDS
ACCTTGACTTTCCTATAGTG+TGG 0.568848 tig0036760:+1622 Msa1455940:intergenic
CAAAGTGGACACACTAGCAA+TGG 0.573576 tig0036760:+1106 Msa1455940:intergenic
CCTAACCGTAATTCAGCTAG+AGG 0.578401 tig0036760:-2639 Msa1455940:CDS
AGGTTCCTTTGCAACAGCGT+TGG 0.595415 tig0036760:+2993 Msa1455940:intergenic
ATACCTTGACAAAACAGTCA+TGG 0.595491 tig0036760:+2938 Msa1455940:intergenic
TCAATATTGTTAGATAACAG+TGG 0.609885 tig0036760:-2690 Msa1455940:CDS
TGTCTGGAATGTGTTGTTTG+GGG 0.613894 tig0036760:+2194 Msa1455940:intergenic
CTAGGCAGAAGAGACTCACT+AGG 0.615944 tig0036760:-2252 Msa1455940:CDS
ATGCTGTGGATTGTGGACTG+TGG 0.621098 tig0036760:+993 Msa1455940:intergenic
TCAAGATAATCAACTCACCA+AGG 0.621484 tig0036760:+1131 Msa1455940:intergenic
AAACATTAGAACAAATTGCA+GGG 0.636631 tig0036760:-1250 Msa1455940:CDS
CAAGATAATCAACTCACCAA+GGG 0.647008 tig0036760:+1132 Msa1455940:intergenic
AGTGAGTCTCTTCTGCCTAG+AGG 0.647836 tig0036760:+2255 Msa1455940:intergenic
AAGAACCTATTGGCTTACAA+GGG 0.648661 tig0036760:-1426 Msa1455940:CDS
TCTCCTTTGACACGTTCAAG+GGG 0.651921 tig0036760:-1273 Msa1455940:CDS
ACTCAATGTCCAAAATCTGG+TGG 0.654856 tig0036760:-1510 Msa1455940:CDS
GTAGGCTGGTGGACCAAACT+GGG 0.661267 tig0036760:-2283 Msa1455940:intron
CATGAATAGTCATAAAACTG+TGG 0.664730 tig0036760:+3051 Msa1455940:intergenic
GCCACACTATAGGAAAGTCA+AGG 0.668868 tig0036760:-1623 Msa1455940:CDS
AAAAGTGAAGCAGCTATACG+AGG 0.700714 tig0036760:+2973 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATAACAAAAGATAAAATAG+AGG + tig0036760:1826-1845 Msa1455940:intergenic 15.0%
!!! TCTGATTTTAAATAGATATA+GGG + tig0036760:2215-2234 Msa1455940:intergenic 15.0%
!! CATATATAAATTTGAATTTG+AGG + tig0036760:2261-2280 Msa1455940:intergenic 15.0%
!! TAATATTATATTATTCTCCA+TGG - tig0036760:2365-2384 Msa1455940:intron 15.0%
!! TAACTTCTTTATAAAAGATA+TGG + tig0036760:3209-3228 Msa1455940:intergenic 15.0%
!! TATAACAAAAGATAAAATAG+AGG + tig0036760:1826-1845 Msa1455940:intergenic 15.0%
!!! TCTGATTTTAAATAGATATA+GGG + tig0036760:2215-2234 Msa1455940:intergenic 15.0%
!! CATATATAAATTTGAATTTG+AGG + tig0036760:2261-2280 Msa1455940:intergenic 15.0%
!! TAATATTATATTATTCTCCA+TGG - tig0036760:2365-2384 Msa1455940:intron 15.0%
!! TAACTTCTTTATAAAAGATA+TGG + tig0036760:3209-3228 Msa1455940:intergenic 15.0%
!! TATTGAAAAAACAACAACAA+TGG - tig0036760:1067-1086 Msa1455940:three_prime_UTR 20.0%
!! TTGAATGTAATCATATATGT+TGG + tig0036760:1467-1486 Msa1455940:intergenic 20.0%
!! AGTAGTAATGTAAGAATATA+AGG + tig0036760:1916-1935 Msa1455940:intergenic 20.0%
!!! GTCTGATTTTAAATAGATAT+AGG + tig0036760:2216-2235 Msa1455940:intergenic 20.0%
!! TATTGAAAAAACAACAACAA+TGG - tig0036760:1067-1086 Msa1455940:three_prime_UTR 20.0%
!! TTGAATGTAATCATATATGT+TGG + tig0036760:1467-1486 Msa1455940:intergenic 20.0%
!! AGTAGTAATGTAAGAATATA+AGG + tig0036760:1916-1935 Msa1455940:intergenic 20.0%
!!! GTCTGATTTTAAATAGATAT+AGG + tig0036760:2216-2235 Msa1455940:intergenic 20.0%
! TCAATATTGTTAGATAACAG+TGG - tig0036760:1540-1559 Msa1455940:CDS 25.0%
! AATAGACGAAACACAATTTA+TGG + tig0036760:1796-1815 Msa1455940:intergenic 25.0%
! AATGTAAGAATATAAGGCTT+CGG + tig0036760:1910-1929 Msa1455940:intergenic 25.0%
! AAATTTATGTGACAAGTTCA+AGG + tig0036760:2127-2146 Msa1455940:intergenic 25.0%
!! TGTGTTAACTTTTATCACAT+TGG + tig0036760:2402-2421 Msa1455940:intergenic 25.0%
! AATGACTATTTACTTAGCTA+CGG + tig0036760:2487-2506 Msa1455940:intergenic 25.0%
! AAATTTCGTGCAATTGTAAA+GGG - tig0036760:2583-2602 Msa1455940:CDS 25.0%
!! TAATTGTTGTCGAATTTTGT+TGG + tig0036760:2780-2799 Msa1455940:intergenic 25.0%
! AAAGAAAAGATCATTTCTCT+CGG + tig0036760:2898-2917 Msa1455940:intergenic 25.0%
! AAACATTAGAACAAATTGCA+GGG - tig0036760:2980-2999 Msa1455940:CDS 25.0%
!!! TATGTTTACTTTTTTTCCCT+TGG - tig0036760:3082-3101 Msa1455940:CDS 25.0%
! TCAATATTGTTAGATAACAG+TGG - tig0036760:1540-1559 Msa1455940:CDS 25.0%
! AATAGACGAAACACAATTTA+TGG + tig0036760:1796-1815 Msa1455940:intergenic 25.0%
! AATGTAAGAATATAAGGCTT+CGG + tig0036760:1910-1929 Msa1455940:intergenic 25.0%
! AAATTTATGTGACAAGTTCA+AGG + tig0036760:2127-2146 Msa1455940:intergenic 25.0%
!! TGTGTTAACTTTTATCACAT+TGG + tig0036760:2402-2421 Msa1455940:intergenic 25.0%
! AATGACTATTTACTTAGCTA+CGG + tig0036760:2487-2506 Msa1455940:intergenic 25.0%
! AAATTTCGTGCAATTGTAAA+GGG - tig0036760:2583-2602 Msa1455940:CDS 25.0%
!! TAATTGTTGTCGAATTTTGT+TGG + tig0036760:2780-2799 Msa1455940:intergenic 25.0%
! AAAGAAAAGATCATTTCTCT+CGG + tig0036760:2898-2917 Msa1455940:intergenic 25.0%
! AAACATTAGAACAAATTGCA+GGG - tig0036760:2980-2999 Msa1455940:CDS 25.0%
!!! TATGTTTACTTTTTTTCCCT+TGG - tig0036760:3082-3101 Msa1455940:CDS 25.0%
AGTCATAAAACTGTGGATAA+AGG + tig0036760:1175-1194 Msa1455940:intergenic 30.0%
CATGAATAGTCATAAAACTG+TGG + tig0036760:1182-1201 Msa1455940:intergenic 30.0%
TTAACAATATTCTGAGCTTG+TGG + tig0036760:1206-1225 Msa1455940:intergenic 30.0%
!!! CAACATCAAAGTTTTTGGTA+CGG + tig0036760:1363-1382 Msa1455940:intergenic 30.0%
TACCAAAAACTTTGATGTTG+CGG - tig0036760:1363-1382 Msa1455940:CDS 30.0%
CTTGAAGTTTGAATTTAGTC+AGG + tig0036760:2064-2083 Msa1455940:intergenic 30.0%
CTGACTAAATTCAAACTTCA+AGG - tig0036760:2062-2081 Msa1455940:intron 30.0%
CAAATTTCGTGCAATTGTAA+AGG - tig0036760:2582-2601 Msa1455940:CDS 30.0%
CAATTACTTCAAGAACCTAT+TGG - tig0036760:2794-2813 Msa1455940:intron 30.0%
GAAACATTAGAACAAATTGC+AGG - tig0036760:2979-2998 Msa1455940:CDS 30.0%
AGTCATAAAACTGTGGATAA+AGG + tig0036760:1175-1194 Msa1455940:intergenic 30.0%
CATGAATAGTCATAAAACTG+TGG + tig0036760:1182-1201 Msa1455940:intergenic 30.0%
TTAACAATATTCTGAGCTTG+TGG + tig0036760:1206-1225 Msa1455940:intergenic 30.0%
!!! CAACATCAAAGTTTTTGGTA+CGG + tig0036760:1363-1382 Msa1455940:intergenic 30.0%
TACCAAAAACTTTGATGTTG+CGG - tig0036760:1363-1382 Msa1455940:CDS 30.0%
CTTGAAGTTTGAATTTAGTC+AGG + tig0036760:2064-2083 Msa1455940:intergenic 30.0%
CTGACTAAATTCAAACTTCA+AGG - tig0036760:2062-2081 Msa1455940:intron 30.0%
CAAATTTCGTGCAATTGTAA+AGG - tig0036760:2582-2601 Msa1455940:CDS 30.0%
CAATTACTTCAAGAACCTAT+TGG - tig0036760:2794-2813 Msa1455940:intron 30.0%
GAAACATTAGAACAAATTGC+AGG - tig0036760:2979-2998 Msa1455940:CDS 30.0%
TCTCATGCTTCTTTCTTTAC+TGG - tig0036760:1106-1125 Msa1455940:three_prime_UTR 35.0%
TTCTTATGACAGAGGCAAAA+AGG + tig0036760:1140-1159 Msa1455940:intergenic 35.0%
TTGCCTCTGTCATAAGAAAA+TGG - tig0036760:1142-1161 Msa1455940:three_prime_UTR 35.0%
TGCCTCTGTCATAAGAAAAT+GGG - tig0036760:1143-1162 Msa1455940:three_prime_UTR 35.0%
! AACCCATTTTCTTATGACAG+AGG + tig0036760:1148-1167 Msa1455940:intergenic 35.0%
! TTTCCATGACTGTTTTGTCA+AGG - tig0036760:1289-1308 Msa1455940:CDS 35.0%
ATACCTTGACAAAACAGTCA+TGG + tig0036760:1295-1314 Msa1455940:intergenic 35.0%
! TAAGAAGTTGATCATGTTGC+AGG - tig0036760:1506-1525 Msa1455940:CDS 35.0%
! AAGAAGTTGATCATGTTGCA+GGG - tig0036760:1507-1526 Msa1455940:CDS 35.0%
!! TGGAAGCATTATTAGTGAGA+AGG - tig0036760:1560-1579 Msa1455940:CDS 35.0%
!! GGAAGCATTATTAGTGAGAA+GGG - tig0036760:1561-1580 Msa1455940:CDS 35.0%
CAAATCCTCTAGCTGAATTA+CGG + tig0036760:1599-1618 Msa1455940:intergenic 35.0%
TAATTCAGCTAGAGGATTTG+AGG - tig0036760:1599-1618 Msa1455940:CDS 35.0%
! TACTACTCCCTTTTATGTGT+AGG - tig0036760:1929-1948 Msa1455940:intron 35.0%
!! TTGTCTGGAATGTGTTGTTT+GGG + tig0036760:2040-2059 Msa1455940:intergenic 35.0%
! ATTGTCTGGAATGTGTTGTT+TGG + tig0036760:2041-2060 Msa1455940:intergenic 35.0%
TGAATTTAGTCAGGATTGTC+TGG + tig0036760:2055-2074 Msa1455940:intergenic 35.0%
! GAATTTGAGGCACATGTATT+AGG + tig0036760:2248-2267 Msa1455940:intergenic 35.0%
AATACCACCTAAATGTGATG+TGG - tig0036760:2327-2346 Msa1455940:intron 35.0%
ATACCACCTAAATGTGATGT+GGG - tig0036760:2328-2347 Msa1455940:intron 35.0%
CTATTACCCACATCACATTT+AGG + tig0036760:2337-2356 Msa1455940:intergenic 35.0%
GCAAGTGATGCTTAAACTTT+AGG + tig0036760:2441-2460 Msa1455940:intergenic 35.0%
! AGTCTAGGAAGAACAGATTT+TGG + tig0036760:2749-2768 Msa1455940:intergenic 35.0%
!! AAGAACCTATTGGCTTACAA+GGG - tig0036760:2804-2823 Msa1455940:intron 35.0%
ATTGCAGGGTGATTAATACT+TGG - tig0036760:2994-3013 Msa1455940:CDS 35.0%
CAAGATAATCAACTCACCAA+GGG + tig0036760:3101-3120 Msa1455940:intergenic 35.0%
TCAAGATAATCAACTCACCA+AGG + tig0036760:3102-3121 Msa1455940:intergenic 35.0%
! GAAGTTCTCAAAGTTGATTG+TGG + tig0036760:1008-1027 Msa1455940:intergenic 35.0%
TCTCATGCTTCTTTCTTTAC+TGG - tig0036760:1106-1125 Msa1455940:three_prime_UTR 35.0%
TTCTTATGACAGAGGCAAAA+AGG + tig0036760:1140-1159 Msa1455940:intergenic 35.0%
TTGCCTCTGTCATAAGAAAA+TGG - tig0036760:1142-1161 Msa1455940:three_prime_UTR 35.0%
TGCCTCTGTCATAAGAAAAT+GGG - tig0036760:1143-1162 Msa1455940:three_prime_UTR 35.0%
! AACCCATTTTCTTATGACAG+AGG + tig0036760:1148-1167 Msa1455940:intergenic 35.0%
! TTTCCATGACTGTTTTGTCA+AGG - tig0036760:1289-1308 Msa1455940:CDS 35.0%
ATACCTTGACAAAACAGTCA+TGG + tig0036760:1295-1314 Msa1455940:intergenic 35.0%
! TAAGAAGTTGATCATGTTGC+AGG - tig0036760:1506-1525 Msa1455940:CDS 35.0%
! AAGAAGTTGATCATGTTGCA+GGG - tig0036760:1507-1526 Msa1455940:CDS 35.0%
!! TGGAAGCATTATTAGTGAGA+AGG - tig0036760:1560-1579 Msa1455940:CDS 35.0%
!! GGAAGCATTATTAGTGAGAA+GGG - tig0036760:1561-1580 Msa1455940:CDS 35.0%
CAAATCCTCTAGCTGAATTA+CGG + tig0036760:1599-1618 Msa1455940:intergenic 35.0%
TAATTCAGCTAGAGGATTTG+AGG - tig0036760:1599-1618 Msa1455940:CDS 35.0%
! TACTACTCCCTTTTATGTGT+AGG - tig0036760:1929-1948 Msa1455940:intron 35.0%
!! TTGTCTGGAATGTGTTGTTT+GGG + tig0036760:2040-2059 Msa1455940:intergenic 35.0%
! ATTGTCTGGAATGTGTTGTT+TGG + tig0036760:2041-2060 Msa1455940:intergenic 35.0%
TGAATTTAGTCAGGATTGTC+TGG + tig0036760:2055-2074 Msa1455940:intergenic 35.0%
! GAATTTGAGGCACATGTATT+AGG + tig0036760:2248-2267 Msa1455940:intergenic 35.0%
AATACCACCTAAATGTGATG+TGG - tig0036760:2327-2346 Msa1455940:intron 35.0%
ATACCACCTAAATGTGATGT+GGG - tig0036760:2328-2347 Msa1455940:intron 35.0%
CTATTACCCACATCACATTT+AGG + tig0036760:2337-2356 Msa1455940:intergenic 35.0%
GCAAGTGATGCTTAAACTTT+AGG + tig0036760:2441-2460 Msa1455940:intergenic 35.0%
! AGTCTAGGAAGAACAGATTT+TGG + tig0036760:2749-2768 Msa1455940:intergenic 35.0%
!! AAGAACCTATTGGCTTACAA+GGG - tig0036760:2804-2823 Msa1455940:intron 35.0%
ATTGCAGGGTGATTAATACT+TGG - tig0036760:2994-3013 Msa1455940:CDS 35.0%
CAAGATAATCAACTCACCAA+GGG + tig0036760:3101-3120 Msa1455940:intergenic 35.0%
TCAAGATAATCAACTCACCA+AGG + tig0036760:3102-3121 Msa1455940:intergenic 35.0%
AAAAGTGAAGCAGCTATACG+AGG + tig0036760:1260-1279 Msa1455940:intergenic 40.0%
GACCATGTGATATTAAGTCG+TGG - tig0036760:1337-1356 Msa1455940:CDS 40.0%
! CACCGCAACATCAAAGTTTT+TGG + tig0036760:1368-1387 Msa1455940:intergenic 40.0%
!! GTCTTCAATTTGAAGTGTCG+AGG + tig0036760:1417-1436 Msa1455940:intergenic 40.0%
!! TGTCTGGAATGTGTTGTTTG+GGG + tig0036760:2039-2058 Msa1455940:intergenic 40.0%
GTTGATCTTGTTGCTCTTTC+TGG - tig0036760:2095-2114 Msa1455940:intron 40.0%
TTACCCACATCACATTTAGG+TGG + tig0036760:2334-2353 Msa1455940:intergenic 40.0%
ACCTTGACTTTCCTATAGTG+TGG + tig0036760:2611-2630 Msa1455940:intergenic 40.0%
CAAAGACTCTACAACCAAAC+TGG - tig0036760:2645-2664 Msa1455940:CDS 40.0%
CTCTACAACCAAACTGGAAA+TGG - tig0036760:2651-2670 Msa1455940:CDS 40.0%
ACTCAATGTCCAAAATCTGG+TGG - tig0036760:2720-2739 Msa1455940:intron 40.0%
! TTTTGGTCACCACCAGATTT+TGG + tig0036760:2732-2751 Msa1455940:intergenic 40.0%
TTGTTGGTGTGACATAGTCT+AGG + tig0036760:2764-2783 Msa1455940:intergenic 40.0%
!! CAAGAACCTATTGGCTTACA+AGG - tig0036760:2803-2822 Msa1455940:intron 40.0%
ATAGTCCCTTGTAAGCCAAT+AGG + tig0036760:2812-2831 Msa1455940:intergenic 40.0%
GAATCAAGAATCAGCTGAGT+TGG - tig0036760:2860-2879 Msa1455940:intron 40.0%
GCGAAGTCTATGATCAAGAT+GGG - tig0036760:2927-2946 Msa1455940:intron 40.0%
TATCTCCTTTGACACGTTCA+AGG - tig0036760:2955-2974 Msa1455940:CDS 40.0%
ATCTCCTTTGACACGTTCAA+GGG - tig0036760:2956-2975 Msa1455940:CDS 40.0%
ATTGCTAGTGTGTCCACTTT+GGG - tig0036760:3126-3145 Msa1455940:CDS 40.0%
CAAAGTCATATTGCCCAAAG+TGG + tig0036760:3142-3161 Msa1455940:intergenic 40.0%
CACTTTGGGCAATATGACTT+TGG - tig0036760:3140-3159 Msa1455940:CDS 40.0%
AAAAGTGAAGCAGCTATACG+AGG + tig0036760:1260-1279 Msa1455940:intergenic 40.0%
GACCATGTGATATTAAGTCG+TGG - tig0036760:1337-1356 Msa1455940:CDS 40.0%
! CACCGCAACATCAAAGTTTT+TGG + tig0036760:1368-1387 Msa1455940:intergenic 40.0%
!! GTCTTCAATTTGAAGTGTCG+AGG + tig0036760:1417-1436 Msa1455940:intergenic 40.0%
!! TGTCTGGAATGTGTTGTTTG+GGG + tig0036760:2039-2058 Msa1455940:intergenic 40.0%
GTTGATCTTGTTGCTCTTTC+TGG - tig0036760:2095-2114 Msa1455940:intron 40.0%
TTACCCACATCACATTTAGG+TGG + tig0036760:2334-2353 Msa1455940:intergenic 40.0%
ACCTTGACTTTCCTATAGTG+TGG + tig0036760:2611-2630 Msa1455940:intergenic 40.0%
CAAAGACTCTACAACCAAAC+TGG - tig0036760:2645-2664 Msa1455940:CDS 40.0%
CTCTACAACCAAACTGGAAA+TGG - tig0036760:2651-2670 Msa1455940:CDS 40.0%
ACTCAATGTCCAAAATCTGG+TGG - tig0036760:2720-2739 Msa1455940:intron 40.0%
! TTTTGGTCACCACCAGATTT+TGG + tig0036760:2732-2751 Msa1455940:intergenic 40.0%
TTGTTGGTGTGACATAGTCT+AGG + tig0036760:2764-2783 Msa1455940:intergenic 40.0%
!! CAAGAACCTATTGGCTTACA+AGG - tig0036760:2803-2822 Msa1455940:intron 40.0%
ATAGTCCCTTGTAAGCCAAT+AGG + tig0036760:2812-2831 Msa1455940:intergenic 40.0%
GAATCAAGAATCAGCTGAGT+TGG - tig0036760:2860-2879 Msa1455940:intron 40.0%
GCGAAGTCTATGATCAAGAT+GGG - tig0036760:2927-2946 Msa1455940:intron 40.0%
TATCTCCTTTGACACGTTCA+AGG - tig0036760:2955-2974 Msa1455940:CDS 40.0%
ATCTCCTTTGACACGTTCAA+GGG - tig0036760:2956-2975 Msa1455940:CDS 40.0%
ATTGCTAGTGTGTCCACTTT+GGG - tig0036760:3126-3145 Msa1455940:CDS 40.0%
CAAAGTCATATTGCCCAAAG+TGG + tig0036760:3142-3161 Msa1455940:intergenic 40.0%
CACTTTGGGCAATATGACTT+TGG - tig0036760:3140-3159 Msa1455940:CDS 40.0%
GGCCACGACTTAATATCACA+TGG + tig0036760:1342-1361 Msa1455940:intergenic 45.0%
AAGACGTGTCCAACATGTGT+CGG - tig0036760:1432-1451 Msa1455940:CDS 45.0%
TATCTGACACCGACACATGT+TGG + tig0036760:1444-1463 Msa1455940:intergenic 45.0%
CCTCTAGCTGAATTACGGTT+AGG + tig0036760:1594-1613 Msa1455940:intergenic 45.0%
CCTAACCGTAATTCAGCTAG+AGG - tig0036760:1591-1610 Msa1455940:CDS 45.0%
TCAGCACAAGACACTGTATG+AGG + tig0036760:1663-1682 Msa1455940:intergenic 45.0%
! AGTGTCTTGTGCTGACATTC+TGG - tig0036760:1668-1687 Msa1455940:intron 45.0%
! ACTCCCTTTTATGTGTAGGC+TGG - tig0036760:1933-1952 Msa1455940:intron 45.0%
CCACCAGCCTACACATAAAA+GGG + tig0036760:1939-1958 Msa1455940:intergenic 45.0%
TCCACCAGCCTACACATAAA+AGG + tig0036760:1940-1959 Msa1455940:intergenic 45.0%
TCACTAGGTGCAAGCTTAAG+TGG - tig0036760:1993-2012 Msa1455940:intron 45.0%
CATTGGTGTATGTCAGTCCA+TGG + tig0036760:2385-2404 Msa1455940:intergenic 45.0%
TGTAAAGGGAGCCACACTAT+AGG - tig0036760:2597-2616 Msa1455940:CDS 45.0%
GCCACACTATAGGAAAGTCA+AGG - tig0036760:2607-2626 Msa1455940:CDS 45.0%
GTAGAGTCTTTGCCTAAAGC+TGG + tig0036760:2637-2656 Msa1455940:intergenic 45.0%
! CTTGCTTGCCATTTCCAGTT+TGG + tig0036760:2662-2681 Msa1455940:intergenic 45.0%
CGCACTCAATGTCCAAAATC+TGG - tig0036760:2717-2736 Msa1455940:intron 45.0%
CGCGAAGTCTATGATCAAGA+TGG - tig0036760:2926-2945 Msa1455940:intron 45.0%
TCTCCTTTGACACGTTCAAG+GGG - tig0036760:2957-2976 Msa1455940:CDS 45.0%
TTTCCCCTTGAACGTGTCAA+AGG + tig0036760:2963-2982 Msa1455940:intergenic 45.0%
CAAAGTGGACACACTAGCAA+TGG + tig0036760:3127-3146 Msa1455940:intergenic 45.0%
CATTGCTAGTGTGTCCACTT+TGG - tig0036760:3125-3144 Msa1455940:CDS 45.0%
GGCCACGACTTAATATCACA+TGG + tig0036760:1342-1361 Msa1455940:intergenic 45.0%
AAGACGTGTCCAACATGTGT+CGG - tig0036760:1432-1451 Msa1455940:CDS 45.0%
TATCTGACACCGACACATGT+TGG + tig0036760:1444-1463 Msa1455940:intergenic 45.0%
CCTCTAGCTGAATTACGGTT+AGG + tig0036760:1594-1613 Msa1455940:intergenic 45.0%
CCTAACCGTAATTCAGCTAG+AGG - tig0036760:1591-1610 Msa1455940:CDS 45.0%
TCAGCACAAGACACTGTATG+AGG + tig0036760:1663-1682 Msa1455940:intergenic 45.0%
! AGTGTCTTGTGCTGACATTC+TGG - tig0036760:1668-1687 Msa1455940:intron 45.0%
! ACTCCCTTTTATGTGTAGGC+TGG - tig0036760:1933-1952 Msa1455940:intron 45.0%
CCACCAGCCTACACATAAAA+GGG + tig0036760:1939-1958 Msa1455940:intergenic 45.0%
TCCACCAGCCTACACATAAA+AGG + tig0036760:1940-1959 Msa1455940:intergenic 45.0%
TCACTAGGTGCAAGCTTAAG+TGG - tig0036760:1993-2012 Msa1455940:intron 45.0%
CATTGGTGTATGTCAGTCCA+TGG + tig0036760:2385-2404 Msa1455940:intergenic 45.0%
TGTAAAGGGAGCCACACTAT+AGG - tig0036760:2597-2616 Msa1455940:CDS 45.0%
GCCACACTATAGGAAAGTCA+AGG - tig0036760:2607-2626 Msa1455940:CDS 45.0%
GTAGAGTCTTTGCCTAAAGC+TGG + tig0036760:2637-2656 Msa1455940:intergenic 45.0%
! CTTGCTTGCCATTTCCAGTT+TGG + tig0036760:2662-2681 Msa1455940:intergenic 45.0%
CGCACTCAATGTCCAAAATC+TGG - tig0036760:2717-2736 Msa1455940:intron 45.0%
CGCGAAGTCTATGATCAAGA+TGG - tig0036760:2926-2945 Msa1455940:intron 45.0%
TCTCCTTTGACACGTTCAAG+GGG - tig0036760:2957-2976 Msa1455940:CDS 45.0%
TTTCCCCTTGAACGTGTCAA+AGG + tig0036760:2963-2982 Msa1455940:intergenic 45.0%
CAAAGTGGACACACTAGCAA+TGG + tig0036760:3127-3146 Msa1455940:intergenic 45.0%
CATTGCTAGTGTGTCCACTT+TGG - tig0036760:3125-3144 Msa1455940:CDS 45.0%
AGGTTCCTTTGCAACAGCGT+TGG + tig0036760:1240-1259 Msa1455940:intergenic 50.0%
! CCCTTTTATGTGTAGGCTGG+TGG - tig0036760:1936-1955 Msa1455940:intron 50.0%
AGTGAGTCTCTTCTGCCTAG+AGG + tig0036760:1978-1997 Msa1455940:intergenic 50.0%
CTAGGCAGAAGAGACTCACT+AGG - tig0036760:1978-1997 Msa1455940:intron 50.0%
TGGGGCTGGAATGTTGTTGT+TGG + tig0036760:2021-2040 Msa1455940:intergenic 50.0%
!! TGGAATGTGTTGTTTGGGGC+TGG + tig0036760:2035-2054 Msa1455940:intergenic 50.0%
AGTCAAGGTGCACCAGCTTT+AGG - tig0036760:2622-2641 Msa1455940:CDS 50.0%
AGGTTCCTTTGCAACAGCGT+TGG + tig0036760:1240-1259 Msa1455940:intergenic 50.0%
! CCCTTTTATGTGTAGGCTGG+TGG - tig0036760:1936-1955 Msa1455940:intron 50.0%
AGTGAGTCTCTTCTGCCTAG+AGG + tig0036760:1978-1997 Msa1455940:intergenic 50.0%
CTAGGCAGAAGAGACTCACT+AGG - tig0036760:1978-1997 Msa1455940:intron 50.0%
TGGGGCTGGAATGTTGTTGT+TGG + tig0036760:2021-2040 Msa1455940:intergenic 50.0%
!! TGGAATGTGTTGTTTGGGGC+TGG + tig0036760:2035-2054 Msa1455940:intergenic 50.0%
AGTCAAGGTGCACCAGCTTT+AGG - tig0036760:2622-2641 Msa1455940:CDS 50.0%
!! TGCAACAGCGTTGGCAAGGA+TGG + tig0036760:1231-1250 Msa1455940:intergenic 55.0%
!! CCTTTGCAACAGCGTTGGCA+AGG + tig0036760:1235-1254 Msa1455940:intergenic 55.0%
CCTTGCCAACGCTGTTGCAA+AGG - tig0036760:1232-1251 Msa1455940:exon 55.0%
! TGTAGGCTGGTGGACCAAAC+TGG - tig0036760:1946-1965 Msa1455940:intron 55.0%
! GTAGGCTGGTGGACCAAACT+GGG - tig0036760:1947-1966 Msa1455940:intron 55.0%
!! CCTAGAGGCACTTCCCAGTT+TGG + tig0036760:1963-1982 Msa1455940:intergenic 55.0%
!! CCAAACTGGGAAGTGCCTCT+AGG - tig0036760:1960-1979 Msa1455940:intron 55.0%
!! TGCAACAGCGTTGGCAAGGA+TGG + tig0036760:1231-1250 Msa1455940:intergenic 55.0%
!! CCTTTGCAACAGCGTTGGCA+AGG + tig0036760:1235-1254 Msa1455940:intergenic 55.0%
CCTTGCCAACGCTGTTGCAA+AGG - tig0036760:1232-1251 Msa1455940:exon 55.0%
! TGTAGGCTGGTGGACCAAAC+TGG - tig0036760:1946-1965 Msa1455940:intron 55.0%
! GTAGGCTGGTGGACCAAACT+GGG - tig0036760:1947-1966 Msa1455940:intron 55.0%
!! CCTAGAGGCACTTCCCAGTT+TGG + tig0036760:1963-1982 Msa1455940:intergenic 55.0%
!! CCAAACTGGGAAGTGCCTCT+AGG - tig0036760:1960-1979 Msa1455940:intron 55.0%
Chromosome Type Strat End Strand Name
tig0036760 gene 1007 3245 1007 ID=Msa1455940;Name=Msa1455940
tig0036760 mRNA 1007 3245 1007 ID=Msa1455940-mRNA-1;Parent=Msa1455940;Name=Msa1455940-mRNA-1;_AED=0.05;_eAED=0.05;_QI=79|1|1|1|1|1|4|226|332
tig0036760 exon 1007 1648 1007 ID=Msa1455940-mRNA-1:exon:20476;Parent=Msa1455940-mRNA-1
tig0036760 exon 2136 2301 2136 ID=Msa1455940-mRNA-1:exon:20475;Parent=Msa1455940-mRNA-1
tig0036760 exon 2533 2724 2533 ID=Msa1455940-mRNA-1:exon:20474;Parent=Msa1455940-mRNA-1
tig0036760 exon 2942 3245 2942 ID=Msa1455940-mRNA-1:exon:20473;Parent=Msa1455940-mRNA-1
tig0036760 five_prime_UTR 3167 3245 3167 ID=Msa1455940-mRNA-1:five_prime_utr;Parent=Msa1455940-mRNA-1
tig0036760 CDS 2942 3166 2942 ID=Msa1455940-mRNA-1:cds;Parent=Msa1455940-mRNA-1
tig0036760 CDS 2533 2724 2533 ID=Msa1455940-mRNA-1:cds;Parent=Msa1455940-mRNA-1
tig0036760 CDS 2136 2301 2136 ID=Msa1455940-mRNA-1:cds;Parent=Msa1455940-mRNA-1
tig0036760 CDS 1233 1648 1233 ID=Msa1455940-mRNA-1:cds;Parent=Msa1455940-mRNA-1
tig0036760 three_prime_UTR 1007 1232 1007 ID=Msa1455940-mRNA-1:three_prime_utr;Parent=Msa1455940-mRNA-1
Gene Sequence

>Msa1455940

ATGGCAAATTCTTTGAGCTTTCTCATGCTTCTTTCTTTACTGGCATTTGCTCCTTTTTGCCTCTGTCATAAGAAAATGGGTTCTTACCTTTATCCACAGTTTTATGACTATTCATGTCCACAAGCTCAGAATATTGTTAAGTCCATCCTTGCCAACGCTGTTGCAAAGGAACCTCGTATAGCTGCTTCACTTTTGAGACTTCATTTCCATGACTGTTTTGTCAAGGGTTGTGATGCTTCAATATTGTTAGATAACAGTGGAAGCATTATTAGTGAGAAGGGATCAAATCCTAACCGTAATTCAGCTAGAGGATTTGAGGTCATTGATGAAATTAAATATGCACTAGAAAAAGAATGTCCTCATACAGTGTCTTGTGCTGACATTCTGGCTATAGCTGCTAGAGATTCAACTGTTCTTGCTGGTGGACCAAACTGGGAAGTGCCTCTAGGCAGAAGAGACTCACTAGGTGCAAGCTTAAGTGGTTCCAACAACAACATTCCAGCCCCAAACAACACATTCCAGACAATCCTGACTAAATTCAAACTTCAAGGACTTGACATTGTTGATCTTGTTGCTCTTTCTGGGAGCCACACTATAGGAAAGTCAAGGTGCACCAGCTTTAGGCAAAGACTCTACAACCAAACTGGAAATGGCAAGCAAGATTACACTCTTGATCAATACTATGCTGCTGAATTGCGCACTCAATGTCCAAAATCTGGTGGTGACCAAAATCTGTTCTTCCTAGACTATGTCACACCAACAAAATTCGACAACAATTACTTCAAGAACCTATTGGCTTACAAGGGACTATTGAGCTCTGATGAAATTTTGTTGACAATGAATCAAGAATCAGCTGAGTTGGTGAAATTGTATGCCGAGAGAAATGATCTTTTCTTTGAGCAATTCGCGAAGTCTATGATCAAGATGGGAAATATATCTCCTTTGACACGTTCAAGGGGAAACATTAGAACAAATTGCAGGGTGATTAATACTTGGTGA
Protein sequence

>Msa1455940

MANSLSFLMLLSLLAFAPFCLCHKKMGSYLYPQFYDYSCPQAQNIVKSILANAVAKEPRIAASLLRLHFHDCFVKGCDASILLDNSGSIISEKGSNPNRNSARGFEVIDEIKYALEKECPHTVSCADILAIAARDSTVLAGGPNWEVPLGRRDSLGASLSGSNNNIPAPNNTFQTILTKFKLQGLDIVDLVALSGSHTIGKSRCTSFRQRLYNQTGNGKQDYTLDQYYAAELRTQCPKSGGDQNLFFLDYVTPTKFDNNYFKNLLAYKGLLSSDEILLTMNQESAELVKLYAERNDLFFEQFAKSMIKMGNISPLTRSRGNIRTNCRVINTW*