AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0049310

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0049310 MtrunA17_Chr8g0372601 98.795 332 4 0 1 332 1 332 0.0 681
Msa0049310 MtrunA17_Chr5g0404721 81.515 330 61 0 1 330 1 330 0.0 553
Msa0049310 MtrunA17_Chr1g0155611 62.914 302 111 1 30 330 46 347 3.35e-133 383
Msa0049310 MtrunA17_Chr5g0400331 55.660 318 127 5 23 330 18 331 1.15e-116 340
Msa0049310 MtrunA17_Chr3g0114451 55.814 301 125 2 30 330 26 318 2.67e-109 321
Msa0049310 MtrunA17_Chr2g0320071 48.788 330 156 3 1 330 1 317 5.79e-109 320
Msa0049310 MtrunA17_Chr2g0320031 47.576 330 162 2 1 330 1 319 1.42e-108 319
Msa0049310 MtrunA17_Chr4g0013171 51.205 332 149 5 1 330 1 321 1.62e-108 319
Msa0049310 MtrunA17_Chr7g0258811 49.080 326 160 3 7 330 50 371 1.81e-108 321
Msa0049310 MtrunA17_Chr2g0299691 52.564 312 142 2 24 331 50 359 2.19e-108 320
Msa0049310 MtrunA17_Chr2g0320061 48.428 318 157 1 13 330 8 318 2.72e-107 316
Msa0049310 MtrunA17_Chr2g0292241 49.836 305 152 1 28 331 27 331 4.09e-107 317
Msa0049310 MtrunA17_Chr2g0292181 49.835 303 151 1 30 331 38 340 6.04e-107 317
Msa0049310 MtrunA17_Chr2g0292251 50.165 303 150 1 30 331 28 330 8.21e-107 316
Msa0049310 MtrunA17_Chr4g0068621 50.164 305 148 2 27 330 35 336 1.80e-106 314
Msa0049310 MtrunA17_Chr3g0106921 51.316 304 137 4 30 330 25 320 3.67e-106 313
Msa0049310 MtrunA17_Chr2g0292091 48.137 322 165 2 11 330 4 325 4.69e-106 313
Msa0049310 MtrunA17_Chr2g0320051 50.166 301 143 1 30 330 25 318 1.02e-105 311
Msa0049310 MtrunA17_Chr2g0320101 49.057 318 154 2 13 330 8 317 1.58e-105 311
Msa0049310 MtrunA17_Chr2g0292211 46.526 331 171 2 2 331 17 342 1.92e-105 313
Msa0049310 MtrunA17_Chr2g0291751 48.466 326 163 3 6 330 9 330 1.97e-105 312
Msa0049310 MtrunA17_Chr4g0013181 54.515 299 126 4 34 330 63 353 2.48e-105 312
Msa0049310 MtrunA17_Chr5g0438021 52.145 303 135 3 30 330 31 325 2.59e-105 311
Msa0049310 MtrunA17_Chr7g0244461 49.045 314 151 3 18 330 7 312 7.01e-105 309
Msa0049310 MtrunA17_Chr1g0175561 50.645 310 144 3 30 330 17 326 9.05e-105 310
Msa0049310 MtrunA17_Chr2g0292101 47.812 320 165 2 13 330 7 326 1.08e-104 310
Msa0049310 MtrunA17_Chr4g0043391 47.416 329 156 4 5 330 10 324 1.98e-104 309
Msa0049310 MtrunA17_Chr2g0292111 49.342 304 153 1 28 330 27 330 4.01e-104 309
Msa0049310 MtrunA17_Chr3g0129051 48.589 319 154 3 11 327 9 319 4.13e-103 305
Msa0049310 MtrunA17_Chr2g0292151 47.706 327 164 2 11 330 4 330 7.01e-103 306
Msa0049310 MtrunA17_Chr2g0292291 48.012 327 161 3 14 331 7 333 1.08e-102 305
Msa0049310 MtrunA17_Chr4g0070951 50.318 314 151 2 21 331 19 330 1.20e-102 304
Msa0049310 MtrunA17_Chr4g0038171 47.273 330 157 4 4 330 6 321 1.37e-102 304
Msa0049310 MtrunA17_Chr2g0320091 50.000 302 142 3 30 330 25 318 7.72e-102 302
Msa0049310 MtrunA17_Chr2g0292271 49.338 302 152 1 30 330 29 330 1.16e-101 303
Msa0049310 MtrunA17_Chr5g0432351 51.803 305 135 5 30 330 25 321 5.54e-101 300
Msa0049310 MtrunA17_Chr5g0432441 51.140 307 138 4 28 330 28 326 1.58e-100 299
Msa0049310 MtrunA17_Chr4g0038151 46.951 328 157 5 6 330 8 321 2.66e-100 298
Msa0049310 MtrunA17_Chr3g0129061 50.000 322 151 3 11 330 9 322 2.74e-100 298
Msa0049310 MtrunA17_Chr2g0292261 50.336 298 147 1 34 330 33 330 6.70e-100 298
Msa0049310 MtrunA17_Chr5g0432341 51.475 305 136 5 30 330 25 321 8.60e-100 297
Msa0049310 MtrunA17_Chr3g0129041 50.311 322 150 3 11 330 9 322 7.84e-99 294
Msa0049310 MtrunA17_Chr4g0038161 46.951 328 156 5 6 330 8 320 1.87e-98 293
Msa0049310 MtrunA17_Chr4g0013821 47.508 301 154 3 30 330 28 324 5.39e-98 293
Msa0049310 MtrunA17_Chr5g0402571 47.432 331 165 4 1 330 4 326 1.24e-97 291
Msa0049310 MtrunA17_Chr7g0224371 48.852 305 147 3 26 330 27 322 2.21e-97 291
Msa0049310 MtrunA17_Chr5g0432331 50.820 305 138 5 30 330 56 352 3.18e-97 291
Msa0049310 MtrunA17_Chr5g0402581 46.526 331 168 4 1 330 4 326 1.74e-96 288
Msa0049310 MtrunA17_Chr7g0244451 47.923 313 152 5 19 330 14 316 2.08e-96 288
Msa0049310 MtrunA17_Chr4g0013721 48.185 303 153 3 28 330 98 396 9.66e-96 290
Msa0049310 MtrunA17_Chr4g0013191 48.693 306 146 4 28 330 43 340 2.85e-95 286
Msa0049310 MtrunA17_Chr3g0106901 47.222 324 154 3 7 330 17 323 3.52e-94 283
Msa0049310 MtrunA17_Chr4g0013201 46.535 303 154 2 28 330 44 338 5.32e-94 283
Msa0049310 MtrunA17_Chr5g0421411 47.350 283 145 3 53 331 4 286 3.46e-91 273
Msa0049310 MtrunA17_Chr1g0213061 44.728 313 163 3 20 330 17 321 1.93e-90 273
Msa0049310 MtrunA17_Chr3g0107881 45.031 322 164 5 13 330 12 324 2.57e-90 273
Msa0049310 MtrunA17_Chr2g0322861 45.687 313 167 3 19 330 76 386 1.20e-88 271
Msa0049310 MtrunA17_Chr3g0128061 46.885 305 160 2 28 331 24 327 2.43e-88 268
Msa0049310 MtrunA17_Chr4g0076211 45.791 297 151 6 35 330 46 333 6.55e-86 262
Msa0049310 MtrunA17_Chr4g0024121 45.033 302 163 3 30 330 27 326 1.93e-84 258
Msa0049310 MtrunA17_Chr7g0268501 43.865 326 175 5 5 330 3 320 2.24e-83 255
Msa0049310 MtrunA17_Chr7g0268521 43.865 326 175 5 5 330 3 320 2.24e-83 255
Msa0049310 MtrunA17_Chr1g0204011 42.121 330 174 9 3 330 8 322 5.34e-80 246
Msa0049310 MtrunA17_Chr1g0164891 44.518 301 162 5 34 330 93 392 8.94e-80 248
Msa0049310 MtrunA17_Chr2g0279041 44.518 301 157 5 34 330 31 325 1.03e-79 246
Msa0049310 MtrunA17_Chr5g0405991 41.515 330 179 6 1 330 1 316 5.44e-78 241
Msa0049310 MtrunA17_Chr5g0432401 41.641 329 134 6 5 329 11 285 1.01e-77 239
Msa0049310 MtrunA17_Chr2g0296621 43.333 300 159 7 34 332 54 343 1.06e-76 238
Msa0049310 MtrunA17_Chr8g0371381 41.118 304 172 5 27 330 23 319 6.61e-76 236
Msa0049310 MtrunA17_Chr6g0477071 40.000 330 183 7 1 330 28 342 1.03e-75 236
Msa0049310 MtrunA17_Chr1g0194271 42.532 308 165 4 34 330 34 340 1.80e-75 235
Msa0049310 MtrunA17_Chr1g0194151 42.193 301 169 3 34 330 34 333 5.21e-75 234
Msa0049310 MtrunA17_Chr4g0063671 41.791 335 175 7 1 330 1 320 3.17e-74 231
Msa0049310 MtrunA17_Chr7g0254201 40.741 297 168 6 34 330 24 312 1.10e-73 230
Msa0049310 MtrunA17_Chr7g0254231 39.933 298 168 5 34 331 26 312 2.07e-73 229
Msa0049310 MtrunA17_Chr6g0460711 39.450 327 184 7 5 330 1 314 3.46e-73 229
Msa0049310 MtrunA17_Chr1g0157051 39.210 329 188 5 1 329 1 317 5.46e-73 228
Msa0049310 MtrunA17_Chr1g0188431 38.788 330 186 6 1 330 14 327 6.07e-73 228
Msa0049310 MtrunA17_Chr5g0401431 39.385 325 192 4 8 329 6 328 1.34e-70 223
Msa0049310 MtrunA17_Chr8g0364291 39.319 323 189 4 10 330 7 324 2.01e-70 222
Msa0049310 MtrunA17_Chr1g0181511 39.739 307 173 5 28 330 25 323 2.75e-70 221
Msa0049310 MtrunA17_Chr6g0467161 38.710 310 179 6 23 331 38 337 3.19e-69 219
Msa0049310 MtrunA17_Chr1g0181431 39.216 306 176 4 28 330 25 323 2.95e-67 214
Msa0049310 MtrunA17_Chr4g0046131 40.940 298 170 6 34 326 46 342 4.29e-67 214
Msa0049310 MtrunA17_Chr7g0225221 39.735 302 175 4 30 330 25 320 9.49e-67 212
Msa0049310 MtrunA17_Chr1g0148021 38.973 331 193 6 4 330 3 328 1.26e-66 212
Msa0049310 MtrunA17_Chr6g0467121 37.838 333 185 8 6 330 45 363 6.11e-66 212
Msa0049310 MtrunA17_Chr2g0316791 37.425 334 171 7 27 326 73 402 2.05e-65 211
Msa0049310 MtrunA17_Chr2g0316481 36.747 332 176 6 27 326 73 402 2.18e-65 211
Msa0049310 MtrunA17_Chr1g0197411 36.036 333 201 6 1 330 7 330 7.86e-65 207
Msa0049310 MtrunA17_Chr1g0181481 38.562 306 178 4 28 330 25 323 1.07e-64 207
Msa0049310 MtrunA17_Chr4g0075241 36.111 324 203 3 8 330 7 327 1.31e-64 207
Msa0049310 MtrunA17_Chr2g0278671 41.424 309 168 7 28 330 22 323 1.82e-64 206
Msa0049310 MtrunA17_Chr2g0316831 36.446 332 177 6 27 326 109 438 2.11e-64 210
Msa0049310 MtrunA17_Chr3g0136751 40.000 300 171 4 34 330 29 322 2.30e-64 206
Msa0049310 MtrunA17_Chr2g0316191 36.336 333 177 6 27 326 73 403 5.97e-64 207
Msa0049310 MtrunA17_Chr4g0072091 38.721 297 173 4 34 326 28 319 9.23e-64 204
Msa0049310 MtrunA17_Chr2g0329641 36.152 343 191 8 5 330 4 335 1.15e-63 205
Msa0049310 MtrunA17_Chr4g0053871 38.217 314 185 4 19 329 16 323 5.39e-63 202
Msa0049310 MtrunA17_Chr6g0467251 38.514 296 168 6 34 326 40 324 1.33e-62 202
Msa0049310 MtrunA17_Chr2g0311251 36.095 338 180 8 27 331 8 342 4.18e-61 198
Msa0049310 MtrunA17_Chr2g0279061 42.912 261 139 5 74 330 12 266 3.26e-60 194
Msa0049310 MtrunA17_Chr3g0114461 50.769 195 89 1 136 330 5 192 1.84e-59 189
Msa0049310 MtrunA17_Chr6g0451571 36.928 306 187 5 28 330 32 334 2.06e-59 194
Msa0049310 MtrunA17_Chr4g0074851 34.441 331 200 6 8 330 7 328 1.38e-58 192
Msa0049310 MtrunA17_Chr2g0311241 33.245 379 176 8 27 331 57 432 2.06e-58 194
Msa0049310 MtrunA17_Chr5g0413051 35.922 309 188 5 29 330 72 377 7.23e-55 183
Msa0049310 MtrunA17_Chr2g0292281 45.024 211 103 3 123 331 18 217 1.10e-51 171
Msa0049310 MtrunA17_Chr2g0316811 39.035 228 121 3 27 237 47 273 3.35e-46 159
Msa0049310 MtrunA17_Chr3g0114491 64.220 109 39 0 30 138 18 126 2.16e-42 143
Msa0049310 MtrunA17_Chr4g0004591 30.063 316 160 3 34 329 81 355 9.35e-39 140
Msa0049310 MtrunA17_Chr2g0316141 31.379 290 145 9 76 331 11 280 2.10e-36 132
Msa0049310 MtrunA17_Chr2g0316181 31.379 290 145 9 76 331 11 280 2.10e-36 132
Msa0049310 MtrunA17_Chr1g0181501 35.233 193 115 4 141 330 4 189 9.89e-31 115
Msa0049310 MtrunA17_Chr5g0432321 46.774 124 58 2 151 274 17 132 3.76e-28 106
Msa0049310 MtrunA17_Chr3g0104101 40.278 144 78 5 194 331 9 150 5.54e-24 95.9
Msa0049310 MtrunA17_Chr6g0468731 60.563 71 24 2 69 139 22 88 2.50e-21 87.0
Msa0049310 MtrunA17_Chr1g0181491 42.478 113 63 2 28 140 10 120 5.78e-21 87.8
Msa0049310 MtrunA17_Chr4g0013811 54.667 75 34 0 140 214 5 79 3.35e-20 83.6
Msa0049310 MtrunA17_Chr5g0432361 46.667 90 46 2 241 329 20 108 2.52e-18 79.3
Msa0049310 MtrunA17_Chr7g0254181 41.905 105 57 2 92 196 22 122 2.53e-18 80.9
Msa0049310 MtrunA17_Chr2g0316771 27.119 177 98 3 180 326 7 182 3.81e-17 78.6
Msa0049310 MtrunA17_Chr3g0137751 28.090 267 117 9 61 311 105 312 8.03e-16 77.0
Msa0049310 MtrunA17_Chr7g0254171 45.946 74 39 1 75 148 3 75 1.41e-14 70.1
Msa0049310 MtrunA17_Chr1g0196191 50.769 65 31 1 72 136 27 90 2.06e-13 67.0
Msa0049310 MtrunA17_Chr7g0268491 48.052 77 38 2 254 330 23 97 2.51e-13 65.1
Msa0049310 MtrunA17_Chr3g0124821 28.713 202 105 9 123 312 180 354 1.63e-11 64.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0049310 AT5G66390.1 76.276 333 76 2 1 330 1 333 0.0 531
Msa0049310 AT4G36430.1 68.580 331 104 0 1 331 1 331 1.21e-165 464
Msa0049310 AT2G18150.1 66.667 336 106 1 1 330 1 336 3.06e-165 464
Msa0049310 AT3G50990.1 65.549 328 108 1 8 330 14 341 4.74e-155 438
Msa0049310 AT2G18140.1 61.493 335 124 1 1 330 1 335 1.58e-149 424
Msa0049310 AT1G44970.1 64.803 304 106 1 28 330 43 346 9.08e-139 397
Msa0049310 AT2G35380.1 54.984 311 131 3 27 330 27 335 3.24e-113 332
Msa0049310 AT4G08780.1 53.770 305 138 2 30 331 24 328 6.63e-111 326
Msa0049310 AT4G08770.1 53.770 305 138 2 30 331 24 328 2.56e-110 325
Msa0049310 AT5G06720.1 52.649 302 142 1 30 330 32 333 3.90e-110 324
Msa0049310 AT3G49110.1 50.621 322 156 2 13 331 16 337 8.09e-107 316
Msa0049310 AT3G32980.1 51.429 315 149 3 21 331 21 335 1.20e-106 316
Msa0049310 AT5G06730.1 50.000 302 150 1 30 330 33 334 7.07e-105 311
Msa0049310 AT3G49120.1 51.948 308 145 2 27 331 29 336 7.32e-105 311
Msa0049310 AT2G38390.1 51.155 303 146 2 30 330 31 333 1.17e-104 310
Msa0049310 AT5G05340.1 50.495 303 140 3 30 330 30 324 1.36e-103 307
Msa0049310 AT5G19890.1 50.467 321 150 4 13 330 13 327 1.42e-101 302
Msa0049310 AT1G14550.1 46.809 329 161 4 4 330 5 321 2.62e-100 298
Msa0049310 AT2G38380.1 50.165 303 149 2 30 330 31 333 4.25e-99 296
Msa0049310 AT4G16270.1 50.000 298 145 3 34 330 54 348 4.54e-99 296
Msa0049310 AT5G58400.1 49.671 304 142 4 30 330 30 325 1.43e-98 294
Msa0049310 AT1G49570.1 52.189 297 138 3 33 326 51 346 1.60e-98 295
Msa0049310 AT2G22420.1 48.684 304 152 3 27 330 20 319 2.12e-98 294
Msa0049310 AT5G58390.1 47.706 327 152 5 7 330 6 316 1.23e-96 289
Msa0049310 AT1G68850.1 44.884 303 162 3 34 331 34 336 1.83e-91 276
Msa0049310 AT1G14540.1 42.593 324 171 2 7 330 7 315 3.81e-91 275
Msa0049310 AT3G03670.1 43.161 329 171 5 6 330 5 321 2.68e-88 268
Msa0049310 AT1G05260.1 45.545 303 162 3 30 331 26 326 6.21e-87 265
Msa0049310 AT4G11290.1 43.293 328 177 4 5 330 6 326 1.36e-86 264
Msa0049310 AT5G19880.1 42.813 327 177 4 8 330 9 329 4.44e-85 260
Msa0049310 AT2G35380.2 53.414 249 107 3 89 330 1 247 1.91e-84 255
Msa0049310 AT5G15180.1 43.711 318 170 4 13 330 21 329 2.76e-83 255
Msa0049310 AT5G64120.1 43.434 297 161 5 34 330 39 328 3.12e-81 250
Msa0049310 AT1G71695.1 41.716 338 179 7 5 331 10 340 6.44e-81 250
Msa0049310 AT3G21770.1 44.333 300 164 3 30 328 29 326 9.30e-81 249
Msa0049310 AT5G17820.1 39.394 330 183 6 1 330 1 313 3.88e-79 244
Msa0049310 AT5G42180.1 42.812 320 175 5 10 329 5 316 3.19e-78 242
Msa0049310 AT5G17820.2 39.394 330 183 6 1 330 54 366 4.26e-78 243
Msa0049310 AT5G51890.1 39.759 332 186 7 1 330 3 322 1.03e-76 238
Msa0049310 AT2G41480.1 43.046 302 161 5 34 330 33 328 2.63e-76 237
Msa0049310 AT3G01190.1 43.098 297 164 4 34 330 30 321 3.70e-76 237
Msa0049310 AT2G39040.1 44.156 308 162 7 30 330 46 350 1.05e-75 236
Msa0049310 AT5G39580.1 42.000 300 162 7 34 330 29 319 5.32e-74 231
Msa0049310 AT4G26010.1 39.936 313 173 6 19 330 11 309 3.84e-73 229
Msa0049310 AT1G05240.1 41.254 303 165 6 34 330 30 325 6.50e-73 229
Msa0049310 AT1G05250.1 41.254 303 165 6 34 330 30 325 6.50e-73 229
Msa0049310 AT4G26010.2 39.936 313 173 6 19 330 39 337 1.03e-72 228
Msa0049310 AT5G64100.1 41.806 299 164 5 34 330 41 331 1.24e-70 223
Msa0049310 AT4G33420.1 40.426 329 178 8 2 330 15 325 3.05e-69 219
Msa0049310 AT4G33420.2 40.426 329 178 8 2 330 62 372 1.75e-68 219
Msa0049310 AT4G33870.1 37.015 335 172 5 28 326 66 397 1.90e-68 219
Msa0049310 AT4G37520.1 37.908 306 186 3 28 330 25 329 4.27e-68 216
Msa0049310 AT2G37130.2 39.867 301 170 5 34 330 3 296 3.07e-67 213
Msa0049310 AT5G47000.1 37.730 326 193 5 7 330 13 330 5.81e-67 214
Msa0049310 AT4G37530.1 38.487 304 183 3 30 330 27 329 7.03e-67 213
Msa0049310 AT2G37130.1 39.867 301 170 5 34 330 34 327 7.31e-67 213
Msa0049310 AT5G64110.1 41.667 300 165 6 34 330 38 330 9.57e-67 213
Msa0049310 AT5G40150.1 39.344 305 177 4 28 330 30 328 1.08e-66 213
Msa0049310 AT4G25980.1 38.742 302 175 5 34 330 30 326 1.38e-66 212
Msa0049310 AT4G37520.2 37.582 306 184 4 28 330 25 326 1.70e-66 212
Msa0049310 AT1G30870.1 40.864 301 166 6 34 331 55 346 2.50e-66 213
Msa0049310 AT1G34510.1 38.608 316 179 6 16 330 8 309 2.97e-66 211
Msa0049310 AT3G28200.1 38.689 305 178 4 28 330 19 316 3.46e-66 211
Msa0049310 AT1G24110.1 37.879 330 194 7 6 332 3 324 6.46e-66 211
Msa0049310 AT2G18980.1 37.237 333 196 5 1 330 1 323 8.01e-66 210
Msa0049310 AT2G34060.1 39.803 304 177 5 30 328 42 344 1.73e-65 210
Msa0049310 AT5G14130.1 35.604 323 203 5 9 330 12 330 3.64e-65 209
Msa0049310 AT1G77100.1 40.000 335 175 11 5 330 2 319 4.04e-65 208
Msa0049310 AT4G31760.1 38.700 323 188 5 10 330 12 326 4.30e-65 209
Msa0049310 AT4G17690.1 38.944 303 177 4 30 330 26 322 4.99e-65 208
Msa0049310 AT5G14130.2 35.604 323 203 5 9 330 53 371 1.26e-64 209
Msa0049310 AT5G22410.1 36.810 326 187 9 7 327 11 322 1.88e-63 204
Msa0049310 AT5G67400.1 38.235 306 185 3 28 330 25 329 2.25e-63 204
Msa0049310 AT2G24800.1 38.667 300 176 5 34 330 35 329 3.42e-63 204
Msa0049310 AT3G49960.1 37.667 300 183 3 34 330 31 329 8.34e-63 202
Msa0049310 AT2G43480.1 37.338 308 180 7 28 330 36 335 6.36e-61 198
Msa0049310 AT4G30170.1 35.922 309 188 5 26 330 23 325 1.23e-60 197
Msa0049310 AT4G21960.1 37.000 300 179 4 34 330 35 327 2.97e-59 194
Msa0049310 AT5G24070.1 37.248 298 175 6 38 330 45 335 3.14e-59 194
Msa0049310 AT4G37530.2 37.945 253 154 2 30 279 27 279 1.59e-54 180
Msa0049310 AT3G17070.1 33.993 303 189 6 34 330 42 339 4.63e-50 170
Msa0049310 AT4G25980.2 46.341 164 84 3 34 197 75 234 1.74e-44 154
Msa0049310 AT5G39580.2 45.614 171 88 3 34 204 29 194 6.49e-44 151
Msa0049310 AT2G24800.2 40.933 193 108 2 34 224 35 223 2.84e-38 136
Msa0049310 AT3G17070.2 31.900 279 178 7 58 330 4 276 1.79e-36 132
Msa0049310 AT3G42570.1 39.560 91 54 1 106 195 57 147 1.50e-13 67.8
Msa0049310 AT4G08390.2 29.327 208 108 8 117 312 180 360 1.81e-12 68.2
Msa0049310 AT4G08390.5 29.327 208 108 8 117 312 180 360 1.81e-12 68.2
Msa0049310 AT4G08390.1 29.327 208 108 8 117 312 180 360 1.81e-12 68.2
Msa0049310 AT4G08390.3 29.327 208 108 8 117 312 179 359 1.85e-12 67.8

Find 76 sgRNAs with CRISPR-Local

Find 235 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTTGATCTTGTTGCTCTTTC+TGG 0.030538 1_2:-2483008 Msa0049310:intron
TCTCATGCTTCTTTCTTTAC+TGG 0.153490 1_2:-2483997 Msa0049310:CDS
TTGCCTCTGTCATAAGAAAA+TGG 0.161924 1_2:-2483961 Msa0049310:CDS
TAACTTCTTTATAAAAGATA+TGG 0.312465 1_2:+2481897 None:intergenic
TTCTTATGACAGAGGCAAAA+AGG 0.315188 1_2:+2483966 None:intergenic
AGTCTAGGAAGAACAGATTT+TGG 0.315899 1_2:+2482357 None:intergenic
CTTGCTTGCCATTTCCAGTT+TGG 0.325339 1_2:+2482444 None:intergenic
TTGTCTGGAATGTGTTGTTT+GGG 0.331686 1_2:+2483066 None:intergenic
CCTAGAGGCACTTCCCAGTT+TGG 0.335817 1_2:+2483143 None:intergenic
CAATTACTTCAAGAACCTAT+TGG 0.348212 1_2:-2482309 Msa0049310:CDS
GTATTAATCACCCTGCAATT+TGG 0.351295 1_2:+2482113 None:intergenic
ATTGCTAGTGTGTCCACTTT+GGG 0.356689 1_2:-2481977 Msa0049310:three_prime_UTR
ATTGTCTGGAATGTGTTGTT+TGG 0.359012 1_2:+2483065 None:intergenic
AGTCATAAAACTGTGGATAA+AGG 0.363575 1_2:+2483931 None:intergenic
CGCACTCAATGTCCAAAATC+TGG 0.374881 1_2:-2482386 Msa0049310:CDS
CTCTACAACCAAACTGGAAA+TGG 0.376548 1_2:-2482452 Msa0049310:CDS
AGTCAAGGTGCACCAGCTTT+AGG 0.378431 1_2:-2482481 Msa0049310:CDS
CACTTTGGGCAATATGACTT+TGG 0.383296 1_2:-2481963 Msa0049310:three_prime_UTR
AGTGTCTTGTGCTGACATTC+TGG 0.388994 1_2:-2483435 Msa0049310:CDS
CTGACTAAATTCAAACTTCA+AGG 0.398099 1_2:-2483041 Msa0049310:CDS
TGAATTTAGTCAGGATTGTC+TGG 0.402260 1_2:+2483051 None:intergenic
CAAAGACTCTACAACCAAAC+TGG 0.405912 1_2:-2482458 Msa0049310:CDS
CAAGAACCTATTGGCTTACA+AGG 0.407095 1_2:-2482300 Msa0049310:CDS
CTTGAAGTTTGAATTTAGTC+AGG 0.409451 1_2:+2483042 None:intergenic
CATTGCTAGTGTGTCCACTT+TGG 0.413267 1_2:-2481978 Msa0049310:three_prime_UTR
TGGAATGTGTTGTTTGGGGC+TGG 0.416065 1_2:+2483071 None:intergenic
TGCCTCTGTCATAAGAAAAT+GGG 0.416344 1_2:-2483960 Msa0049310:CDS
TGTAGGCTGGTGGACCAAAC+TGG 0.428965 1_2:-2483157 Msa0049310:intron
TGGGGCTGGAATGTTGTTGT+TGG 0.431670 1_2:+2483085 None:intergenic
GAAACATTAGACCAAATTGC+AGG 0.434326 1_2:-2482124 Msa0049310:CDS
CCTCTAGCTGAATTACGGTT+AGG 0.445893 1_2:+2483512 None:intergenic
CAAATCCTCTAGCTGAATTA+CGG 0.449179 1_2:+2483507 None:intergenic
ATAGTCCCTTGTAAGCCAAT+AGG 0.450211 1_2:+2482294 None:intergenic
TATCTCCTTTGACAGGTTCA+AGG 0.463087 1_2:-2482148 Msa0049310:CDS
GTAGAGTCTTTGCCTAAAGC+TGG 0.469738 1_2:+2482469 None:intergenic
TGTAAAGGGAGCCACACTAT+AGG 0.470026 1_2:-2482506 Msa0049310:intron
TGCAACAGCGTTGGCAAGGA+TGG 0.479112 1_2:+2483875 None:intergenic
TAATTCAGCTAGAGGATTTG+AGG 0.484271 1_2:-2483504 Msa0049310:CDS
GAATCAAGAATCAGCTGAGT+TGG 0.487866 1_2:-2482243 Msa0049310:CDS
GGAAATATATCTCCTTTGAC+AGG 0.492948 1_2:-2482155 Msa0049310:CDS
TCACTAGGTGCAAGCTTAAG+TGG 0.493970 1_2:-2483110 Msa0049310:CDS
ATTGCAGGGTGATTAATACT+TGG 0.509873 1_2:-2482109 Msa0049310:CDS
CGCGAAGTCTATGATCAAGA+TGG 0.511590 1_2:-2482177 Msa0049310:CDS
TTAACAATATTCTGAGCTTG+TGG 0.514680 1_2:+2483900 None:intergenic
ATCTCCTTTGACAGGTTCAA+GGG 0.516893 1_2:-2482147 Msa0049310:CDS
CAAAGTCATATTGCCCAAAG+TGG 0.535609 1_2:+2481964 None:intergenic
CCTTTGCAACAGCGTTGGCA+AGG 0.536581 1_2:+2483871 None:intergenic
TGGAAGCATTATTAGTGAGA+AGG 0.547651 1_2:-2483543 Msa0049310:CDS
TCAGCACAAGACACTGTATG+AGG 0.547706 1_2:+2483443 None:intergenic
GGAAGCATTATTAGTGAGAA+GGG 0.552053 1_2:-2483542 Msa0049310:CDS
AAAGAAAAGATCATTTCTCT+CGG 0.552769 1_2:+2482208 None:intergenic
TTGTTGGTGTGACATAGTCT+AGG 0.552976 1_2:+2482342 None:intergenic
CCTTGCCAACGCTGTTGCAA+AGG 0.555903 1_2:-2483871 Msa0049310:CDS
TTTCCCCTTGAACCTGTCAA+AGG 0.564091 1_2:+2482143 None:intergenic
CCAAACTGGGAAGTGCCTCT+AGG 0.565559 1_2:-2483143 Msa0049310:CDS
GCGAAGTCTATGATCAAGAT+GGG 0.567884 1_2:-2482176 Msa0049310:CDS
ACCTTGACTTTCCTATAGTG+TGG 0.568848 1_2:+2482495 None:intergenic
CAAAGTGGACACACTAGCAA+TGG 0.573576 1_2:+2481979 None:intergenic
CCTAACCGTAATTCAGCTAG+AGG 0.578401 1_2:-2483512 Msa0049310:CDS
AGGTTCCTTTGCAACAGCGT+TGG 0.595415 1_2:+2483866 None:intergenic
ATACCTTGACAAAACAGTCA+TGG 0.595491 1_2:+2483811 None:intergenic
TCAATATTGTTAGATAACAG+TGG 0.609885 1_2:-2483563 Msa0049310:CDS
TGTCTGGAATGTGTTGTTTG+GGG 0.613894 1_2:+2483067 None:intergenic
CTAGGCAGAAGAGACTCACT+AGG 0.615944 1_2:-2483125 Msa0049310:CDS
TCAAGATAATCAACTCACCA+AGG 0.621484 1_2:+2482004 None:intergenic
TCTCCTTTGACAGGTTCAAG+GGG 0.642331 1_2:-2482146 Msa0049310:CDS
CAAGATAATCAACTCACCAA+GGG 0.647008 1_2:+2482005 None:intergenic
AGTGAGTCTCTTCTGCCTAG+AGG 0.647836 1_2:+2483128 None:intergenic
AAGAACCTATTGGCTTACAA+GGG 0.648661 1_2:-2482299 Msa0049310:CDS
ACTCAATGTCCAAAATCTGG+TGG 0.654856 1_2:-2482383 Msa0049310:CDS
AAACATTAGACCAAATTGCA+GGG 0.659129 1_2:-2482123 Msa0049310:CDS
GTAGGCTGGTGGACCAAACT+GGG 0.661267 1_2:-2483156 Msa0049310:intron
CATGAATAGTCATAAAACTG+TGG 0.664730 1_2:+2483924 None:intergenic
GCCACACTATAGGAAAGTCA+AGG 0.668868 1_2:-2482496 Msa0049310:CDS
ATGTTGTGGATTGTGGACTG+TGG 0.672131 1_2:+2481866 None:intergenic
AAAAGTGAAGCAGCTATACG+AGG 0.700714 1_2:+2483846 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATAACAAAAGATAAAATAG+AGG + chr1_2:2482699-2482718 None:intergenic 15.0%
!!! TCTGATTTTAAATAGATATA+GGG + chr1_2:2483088-2483107 None:intergenic 15.0%
!! CATATATAAATTTGAATTTG+AGG + chr1_2:2483134-2483153 None:intergenic 15.0%
!! TAATATTATATTATTCTCCA+TGG - chr1_2:2483238-2483257 Msa0049310:intron 15.0%
!! TAACTTCTTTATAAAAGATA+TGG + chr1_2:2484082-2484101 None:intergenic 15.0%
!! TATAACAAAAGATAAAATAG+AGG + chr1_2:2482699-2482718 None:intergenic 15.0%
!!! TCTGATTTTAAATAGATATA+GGG + chr1_2:2483088-2483107 None:intergenic 15.0%
!! CATATATAAATTTGAATTTG+AGG + chr1_2:2483134-2483153 None:intergenic 15.0%
!! TAATATTATATTATTCTCCA+TGG - chr1_2:2483238-2483257 Msa0049310:intron 15.0%
!! TAACTTCTTTATAAAAGATA+TGG + chr1_2:2484082-2484101 None:intergenic 15.0%
!! TATTGAAAAAACAACAACAA+TGG - chr1_2:2481940-2481959 Msa0049310:three_prime_UTR 20.0%
!! TTGAATGTAATCATATATGT+TGG + chr1_2:2482340-2482359 None:intergenic 20.0%
!! AGTAGTAATGTAAGAATATA+AGG + chr1_2:2482789-2482808 None:intergenic 20.0%
!!! GTCTGATTTTAAATAGATAT+AGG + chr1_2:2483089-2483108 None:intergenic 20.0%
!! TATTGAAAAAACAACAACAA+TGG - chr1_2:2481940-2481959 Msa0049310:three_prime_UTR 20.0%
!! TTGAATGTAATCATATATGT+TGG + chr1_2:2482340-2482359 None:intergenic 20.0%
!! AGTAGTAATGTAAGAATATA+AGG + chr1_2:2482789-2482808 None:intergenic 20.0%
!!! GTCTGATTTTAAATAGATAT+AGG + chr1_2:2483089-2483108 None:intergenic 20.0%
! TCAATATTGTTAGATAACAG+TGG - chr1_2:2482413-2482432 Msa0049310:CDS 25.0%
! AATAGACGAAACACAATTTA+TGG + chr1_2:2482669-2482688 None:intergenic 25.0%
! AATGTAAGAATATAAGGCTT+CGG + chr1_2:2482783-2482802 None:intergenic 25.0%
! AAATTTATGTGACAAGTTCA+AGG + chr1_2:2483000-2483019 None:intergenic 25.0%
!! TGTGTTAACTTTTATCACAT+TGG + chr1_2:2483275-2483294 None:intergenic 25.0%
! AATGACTATTTACTTAGCTA+CGG + chr1_2:2483360-2483379 None:intergenic 25.0%
! AAATTTCGTGCAATTGTAAA+GGG - chr1_2:2483456-2483475 Msa0049310:CDS 25.0%
!! TAATTGTTGTCGAATTTTGT+TGG + chr1_2:2483653-2483672 None:intergenic 25.0%
! AAAGAAAAGATCATTTCTCT+CGG + chr1_2:2483771-2483790 None:intergenic 25.0%
!!! TATGTTTACTTTTTTTCCCT+TGG - chr1_2:2483955-2483974 Msa0049310:CDS 25.0%
! TCAATATTGTTAGATAACAG+TGG - chr1_2:2482413-2482432 Msa0049310:CDS 25.0%
! AATAGACGAAACACAATTTA+TGG + chr1_2:2482669-2482688 None:intergenic 25.0%
! AATGTAAGAATATAAGGCTT+CGG + chr1_2:2482783-2482802 None:intergenic 25.0%
! AAATTTATGTGACAAGTTCA+AGG + chr1_2:2483000-2483019 None:intergenic 25.0%
!! TGTGTTAACTTTTATCACAT+TGG + chr1_2:2483275-2483294 None:intergenic 25.0%
! AATGACTATTTACTTAGCTA+CGG + chr1_2:2483360-2483379 None:intergenic 25.0%
! AAATTTCGTGCAATTGTAAA+GGG - chr1_2:2483456-2483475 Msa0049310:CDS 25.0%
!! TAATTGTTGTCGAATTTTGT+TGG + chr1_2:2483653-2483672 None:intergenic 25.0%
! AAAGAAAAGATCATTTCTCT+CGG + chr1_2:2483771-2483790 None:intergenic 25.0%
!!! TATGTTTACTTTTTTTCCCT+TGG - chr1_2:2483955-2483974 Msa0049310:CDS 25.0%
AGTCATAAAACTGTGGATAA+AGG + chr1_2:2482048-2482067 None:intergenic 30.0%
CATGAATAGTCATAAAACTG+TGG + chr1_2:2482055-2482074 None:intergenic 30.0%
TTAACAATATTCTGAGCTTG+TGG + chr1_2:2482079-2482098 None:intergenic 30.0%
!!! CAACATCAAAGTTTTTGGTA+CGG + chr1_2:2482236-2482255 None:intergenic 30.0%
TACCAAAAACTTTGATGTTG+CGG - chr1_2:2482236-2482255 Msa0049310:CDS 30.0%
CTTGAAGTTTGAATTTAGTC+AGG + chr1_2:2482937-2482956 None:intergenic 30.0%
CTGACTAAATTCAAACTTCA+AGG - chr1_2:2482935-2482954 Msa0049310:intron 30.0%
CAAATTTCGTGCAATTGTAA+AGG - chr1_2:2483455-2483474 Msa0049310:CDS 30.0%
CAATTACTTCAAGAACCTAT+TGG - chr1_2:2483667-2483686 Msa0049310:intron 30.0%
AAACATTAGACCAAATTGCA+GGG - chr1_2:2483853-2483872 Msa0049310:CDS 30.0%
AGTCATAAAACTGTGGATAA+AGG + chr1_2:2482048-2482067 None:intergenic 30.0%
CATGAATAGTCATAAAACTG+TGG + chr1_2:2482055-2482074 None:intergenic 30.0%
TTAACAATATTCTGAGCTTG+TGG + chr1_2:2482079-2482098 None:intergenic 30.0%
!!! CAACATCAAAGTTTTTGGTA+CGG + chr1_2:2482236-2482255 None:intergenic 30.0%
TACCAAAAACTTTGATGTTG+CGG - chr1_2:2482236-2482255 Msa0049310:CDS 30.0%
CTTGAAGTTTGAATTTAGTC+AGG + chr1_2:2482937-2482956 None:intergenic 30.0%
CTGACTAAATTCAAACTTCA+AGG - chr1_2:2482935-2482954 Msa0049310:intron 30.0%
CAAATTTCGTGCAATTGTAA+AGG - chr1_2:2483455-2483474 Msa0049310:CDS 30.0%
CAATTACTTCAAGAACCTAT+TGG - chr1_2:2483667-2483686 Msa0049310:intron 30.0%
AAACATTAGACCAAATTGCA+GGG - chr1_2:2483853-2483872 Msa0049310:CDS 30.0%
TCTCATGCTTCTTTCTTTAC+TGG - chr1_2:2481979-2481998 Msa0049310:three_prime_UTR 35.0%
TTCTTATGACAGAGGCAAAA+AGG + chr1_2:2482013-2482032 None:intergenic 35.0%
TTGCCTCTGTCATAAGAAAA+TGG - chr1_2:2482015-2482034 Msa0049310:three_prime_UTR 35.0%
TGCCTCTGTCATAAGAAAAT+GGG - chr1_2:2482016-2482035 Msa0049310:three_prime_UTR 35.0%
! AACCCATTTTCTTATGACAG+AGG + chr1_2:2482021-2482040 None:intergenic 35.0%
! TTTCCATGACTGTTTTGTCA+AGG - chr1_2:2482162-2482181 Msa0049310:CDS 35.0%
ATACCTTGACAAAACAGTCA+TGG + chr1_2:2482168-2482187 None:intergenic 35.0%
! TAAGAAGTTGATCATGTTGC+AGG - chr1_2:2482379-2482398 Msa0049310:CDS 35.0%
! AAGAAGTTGATCATGTTGCA+GGG - chr1_2:2482380-2482399 Msa0049310:CDS 35.0%
!! TGGAAGCATTATTAGTGAGA+AGG - chr1_2:2482433-2482452 Msa0049310:CDS 35.0%
!! GGAAGCATTATTAGTGAGAA+GGG - chr1_2:2482434-2482453 Msa0049310:CDS 35.0%
CAAATCCTCTAGCTGAATTA+CGG + chr1_2:2482472-2482491 None:intergenic 35.0%
TAATTCAGCTAGAGGATTTG+AGG - chr1_2:2482472-2482491 Msa0049310:CDS 35.0%
! TACTACTCCCTTTTATGTGT+AGG - chr1_2:2482802-2482821 Msa0049310:intron 35.0%
!! TTGTCTGGAATGTGTTGTTT+GGG + chr1_2:2482913-2482932 None:intergenic 35.0%
! ATTGTCTGGAATGTGTTGTT+TGG + chr1_2:2482914-2482933 None:intergenic 35.0%
TGAATTTAGTCAGGATTGTC+TGG + chr1_2:2482928-2482947 None:intergenic 35.0%
! GAATTTGAGGCACATGTATT+AGG + chr1_2:2483121-2483140 None:intergenic 35.0%
AATACCACCTAAATGTGATG+TGG - chr1_2:2483200-2483219 Msa0049310:intron 35.0%
ATACCACCTAAATGTGATGT+GGG - chr1_2:2483201-2483220 Msa0049310:intron 35.0%
CTATTACCCACATCACATTT+AGG + chr1_2:2483210-2483229 None:intergenic 35.0%
GCAAGTGATGCTTAAACTTT+AGG + chr1_2:2483314-2483333 None:intergenic 35.0%
! AGTCTAGGAAGAACAGATTT+TGG + chr1_2:2483622-2483641 None:intergenic 35.0%
!! AAGAACCTATTGGCTTACAA+GGG - chr1_2:2483677-2483696 Msa0049310:intron 35.0%
GGAAATATATCTCCTTTGAC+AGG - chr1_2:2483821-2483840 Msa0049310:CDS 35.0%
GAAACATTAGACCAAATTGC+AGG - chr1_2:2483852-2483871 Msa0049310:CDS 35.0%
GTATTAATCACCCTGCAATT+TGG + chr1_2:2483866-2483885 None:intergenic 35.0%
ATTGCAGGGTGATTAATACT+TGG - chr1_2:2483867-2483886 Msa0049310:CDS 35.0%
CAAGATAATCAACTCACCAA+GGG + chr1_2:2483974-2483993 None:intergenic 35.0%
TCAAGATAATCAACTCACCA+AGG + chr1_2:2483975-2483994 None:intergenic 35.0%
! GAAGTTCTCAAAGTTGATTG+TGG + chr1_2:2481881-2481900 None:intergenic 35.0%
TCTCATGCTTCTTTCTTTAC+TGG - chr1_2:2481979-2481998 Msa0049310:three_prime_UTR 35.0%
TTCTTATGACAGAGGCAAAA+AGG + chr1_2:2482013-2482032 None:intergenic 35.0%
TTGCCTCTGTCATAAGAAAA+TGG - chr1_2:2482015-2482034 Msa0049310:three_prime_UTR 35.0%
TGCCTCTGTCATAAGAAAAT+GGG - chr1_2:2482016-2482035 Msa0049310:three_prime_UTR 35.0%
! AACCCATTTTCTTATGACAG+AGG + chr1_2:2482021-2482040 None:intergenic 35.0%
! TTTCCATGACTGTTTTGTCA+AGG - chr1_2:2482162-2482181 Msa0049310:CDS 35.0%
ATACCTTGACAAAACAGTCA+TGG + chr1_2:2482168-2482187 None:intergenic 35.0%
! TAAGAAGTTGATCATGTTGC+AGG - chr1_2:2482379-2482398 Msa0049310:CDS 35.0%
! AAGAAGTTGATCATGTTGCA+GGG - chr1_2:2482380-2482399 Msa0049310:CDS 35.0%
!! TGGAAGCATTATTAGTGAGA+AGG - chr1_2:2482433-2482452 Msa0049310:CDS 35.0%
!! GGAAGCATTATTAGTGAGAA+GGG - chr1_2:2482434-2482453 Msa0049310:CDS 35.0%
CAAATCCTCTAGCTGAATTA+CGG + chr1_2:2482472-2482491 None:intergenic 35.0%
TAATTCAGCTAGAGGATTTG+AGG - chr1_2:2482472-2482491 Msa0049310:CDS 35.0%
! TACTACTCCCTTTTATGTGT+AGG - chr1_2:2482802-2482821 Msa0049310:intron 35.0%
!! TTGTCTGGAATGTGTTGTTT+GGG + chr1_2:2482913-2482932 None:intergenic 35.0%
! ATTGTCTGGAATGTGTTGTT+TGG + chr1_2:2482914-2482933 None:intergenic 35.0%
TGAATTTAGTCAGGATTGTC+TGG + chr1_2:2482928-2482947 None:intergenic 35.0%
! GAATTTGAGGCACATGTATT+AGG + chr1_2:2483121-2483140 None:intergenic 35.0%
AATACCACCTAAATGTGATG+TGG - chr1_2:2483200-2483219 Msa0049310:intron 35.0%
ATACCACCTAAATGTGATGT+GGG - chr1_2:2483201-2483220 Msa0049310:intron 35.0%
CTATTACCCACATCACATTT+AGG + chr1_2:2483210-2483229 None:intergenic 35.0%
GCAAGTGATGCTTAAACTTT+AGG + chr1_2:2483314-2483333 None:intergenic 35.0%
! AGTCTAGGAAGAACAGATTT+TGG + chr1_2:2483622-2483641 None:intergenic 35.0%
!! AAGAACCTATTGGCTTACAA+GGG - chr1_2:2483677-2483696 Msa0049310:intron 35.0%
GGAAATATATCTCCTTTGAC+AGG - chr1_2:2483821-2483840 Msa0049310:CDS 35.0%
GAAACATTAGACCAAATTGC+AGG - chr1_2:2483852-2483871 Msa0049310:CDS 35.0%
GTATTAATCACCCTGCAATT+TGG + chr1_2:2483866-2483885 None:intergenic 35.0%
ATTGCAGGGTGATTAATACT+TGG - chr1_2:2483867-2483886 Msa0049310:CDS 35.0%
CAAGATAATCAACTCACCAA+GGG + chr1_2:2483974-2483993 None:intergenic 35.0%
TCAAGATAATCAACTCACCA+AGG + chr1_2:2483975-2483994 None:intergenic 35.0%
AAAAGTGAAGCAGCTATACG+AGG + chr1_2:2482133-2482152 None:intergenic 40.0%
GACCATGTGATATTAAGTCG+TGG - chr1_2:2482210-2482229 Msa0049310:CDS 40.0%
! CACCGCAACATCAAAGTTTT+TGG + chr1_2:2482241-2482260 None:intergenic 40.0%
!! GTCTTCAATTTGAAGTGTCG+AGG + chr1_2:2482290-2482309 None:intergenic 40.0%
!! TGTCTGGAATGTGTTGTTTG+GGG + chr1_2:2482912-2482931 None:intergenic 40.0%
GTTGATCTTGTTGCTCTTTC+TGG - chr1_2:2482968-2482987 Msa0049310:intron 40.0%
TTACCCACATCACATTTAGG+TGG + chr1_2:2483207-2483226 None:intergenic 40.0%
ACCTTGACTTTCCTATAGTG+TGG + chr1_2:2483484-2483503 None:intergenic 40.0%
CAAAGACTCTACAACCAAAC+TGG - chr1_2:2483518-2483537 Msa0049310:CDS 40.0%
CTCTACAACCAAACTGGAAA+TGG - chr1_2:2483524-2483543 Msa0049310:CDS 40.0%
ACTCAATGTCCAAAATCTGG+TGG - chr1_2:2483593-2483612 Msa0049310:intron 40.0%
! TTTTGGTCACCACCAGATTT+TGG + chr1_2:2483605-2483624 None:intergenic 40.0%
TTGTTGGTGTGACATAGTCT+AGG + chr1_2:2483637-2483656 None:intergenic 40.0%
!! CAAGAACCTATTGGCTTACA+AGG - chr1_2:2483676-2483695 Msa0049310:intron 40.0%
ATAGTCCCTTGTAAGCCAAT+AGG + chr1_2:2483685-2483704 None:intergenic 40.0%
GAATCAAGAATCAGCTGAGT+TGG - chr1_2:2483733-2483752 Msa0049310:intron 40.0%
GCGAAGTCTATGATCAAGAT+GGG - chr1_2:2483800-2483819 Msa0049310:intron 40.0%
TATCTCCTTTGACAGGTTCA+AGG - chr1_2:2483828-2483847 Msa0049310:CDS 40.0%
ATCTCCTTTGACAGGTTCAA+GGG - chr1_2:2483829-2483848 Msa0049310:CDS 40.0%
ATTGCTAGTGTGTCCACTTT+GGG - chr1_2:2483999-2484018 Msa0049310:CDS 40.0%
CAAAGTCATATTGCCCAAAG+TGG + chr1_2:2484015-2484034 None:intergenic 40.0%
CACTTTGGGCAATATGACTT+TGG - chr1_2:2484013-2484032 Msa0049310:CDS 40.0%
AAAAGTGAAGCAGCTATACG+AGG + chr1_2:2482133-2482152 None:intergenic 40.0%
GACCATGTGATATTAAGTCG+TGG - chr1_2:2482210-2482229 Msa0049310:CDS 40.0%
! CACCGCAACATCAAAGTTTT+TGG + chr1_2:2482241-2482260 None:intergenic 40.0%
!! GTCTTCAATTTGAAGTGTCG+AGG + chr1_2:2482290-2482309 None:intergenic 40.0%
!! TGTCTGGAATGTGTTGTTTG+GGG + chr1_2:2482912-2482931 None:intergenic 40.0%
GTTGATCTTGTTGCTCTTTC+TGG - chr1_2:2482968-2482987 Msa0049310:intron 40.0%
TTACCCACATCACATTTAGG+TGG + chr1_2:2483207-2483226 None:intergenic 40.0%
ACCTTGACTTTCCTATAGTG+TGG + chr1_2:2483484-2483503 None:intergenic 40.0%
CAAAGACTCTACAACCAAAC+TGG - chr1_2:2483518-2483537 Msa0049310:CDS 40.0%
CTCTACAACCAAACTGGAAA+TGG - chr1_2:2483524-2483543 Msa0049310:CDS 40.0%
ACTCAATGTCCAAAATCTGG+TGG - chr1_2:2483593-2483612 Msa0049310:intron 40.0%
! TTTTGGTCACCACCAGATTT+TGG + chr1_2:2483605-2483624 None:intergenic 40.0%
TTGTTGGTGTGACATAGTCT+AGG + chr1_2:2483637-2483656 None:intergenic 40.0%
!! CAAGAACCTATTGGCTTACA+AGG - chr1_2:2483676-2483695 Msa0049310:intron 40.0%
ATAGTCCCTTGTAAGCCAAT+AGG + chr1_2:2483685-2483704 None:intergenic 40.0%
GAATCAAGAATCAGCTGAGT+TGG - chr1_2:2483733-2483752 Msa0049310:intron 40.0%
GCGAAGTCTATGATCAAGAT+GGG - chr1_2:2483800-2483819 Msa0049310:intron 40.0%
TATCTCCTTTGACAGGTTCA+AGG - chr1_2:2483828-2483847 Msa0049310:CDS 40.0%
ATCTCCTTTGACAGGTTCAA+GGG - chr1_2:2483829-2483848 Msa0049310:CDS 40.0%
ATTGCTAGTGTGTCCACTTT+GGG - chr1_2:2483999-2484018 Msa0049310:CDS 40.0%
CAAAGTCATATTGCCCAAAG+TGG + chr1_2:2484015-2484034 None:intergenic 40.0%
CACTTTGGGCAATATGACTT+TGG - chr1_2:2484013-2484032 Msa0049310:CDS 40.0%
GGCCACGACTTAATATCACA+TGG + chr1_2:2482215-2482234 None:intergenic 45.0%
AAGACGTGTCCAACATGTGT+CGG - chr1_2:2482305-2482324 Msa0049310:CDS 45.0%
TATCTGACACCGACACATGT+TGG + chr1_2:2482317-2482336 None:intergenic 45.0%
CCTCTAGCTGAATTACGGTT+AGG + chr1_2:2482467-2482486 None:intergenic 45.0%
CCTAACCGTAATTCAGCTAG+AGG - chr1_2:2482464-2482483 Msa0049310:CDS 45.0%
TCAGCACAAGACACTGTATG+AGG + chr1_2:2482536-2482555 None:intergenic 45.0%
! AGTGTCTTGTGCTGACATTC+TGG - chr1_2:2482541-2482560 Msa0049310:intron 45.0%
! ACTCCCTTTTATGTGTAGGC+TGG - chr1_2:2482806-2482825 Msa0049310:intron 45.0%
CCACCAGCCTACACATAAAA+GGG + chr1_2:2482812-2482831 None:intergenic 45.0%
TCCACCAGCCTACACATAAA+AGG + chr1_2:2482813-2482832 None:intergenic 45.0%
TCACTAGGTGCAAGCTTAAG+TGG - chr1_2:2482866-2482885 Msa0049310:intron 45.0%
CATTGGTGTATGTCAGTCCA+TGG + chr1_2:2483258-2483277 None:intergenic 45.0%
TGTAAAGGGAGCCACACTAT+AGG - chr1_2:2483470-2483489 Msa0049310:CDS 45.0%
GCCACACTATAGGAAAGTCA+AGG - chr1_2:2483480-2483499 Msa0049310:CDS 45.0%
GTAGAGTCTTTGCCTAAAGC+TGG + chr1_2:2483510-2483529 None:intergenic 45.0%
! CTTGCTTGCCATTTCCAGTT+TGG + chr1_2:2483535-2483554 None:intergenic 45.0%
CGCACTCAATGTCCAAAATC+TGG - chr1_2:2483590-2483609 Msa0049310:intron 45.0%
CGCGAAGTCTATGATCAAGA+TGG - chr1_2:2483799-2483818 Msa0049310:intron 45.0%
TCTCCTTTGACAGGTTCAAG+GGG - chr1_2:2483830-2483849 Msa0049310:CDS 45.0%
TTTCCCCTTGAACCTGTCAA+AGG + chr1_2:2483836-2483855 None:intergenic 45.0%
CAAAGTGGACACACTAGCAA+TGG + chr1_2:2484000-2484019 None:intergenic 45.0%
CATTGCTAGTGTGTCCACTT+TGG - chr1_2:2483998-2484017 Msa0049310:CDS 45.0%
GGCCACGACTTAATATCACA+TGG + chr1_2:2482215-2482234 None:intergenic 45.0%
AAGACGTGTCCAACATGTGT+CGG - chr1_2:2482305-2482324 Msa0049310:CDS 45.0%
TATCTGACACCGACACATGT+TGG + chr1_2:2482317-2482336 None:intergenic 45.0%
CCTCTAGCTGAATTACGGTT+AGG + chr1_2:2482467-2482486 None:intergenic 45.0%
CCTAACCGTAATTCAGCTAG+AGG - chr1_2:2482464-2482483 Msa0049310:CDS 45.0%
TCAGCACAAGACACTGTATG+AGG + chr1_2:2482536-2482555 None:intergenic 45.0%
! AGTGTCTTGTGCTGACATTC+TGG - chr1_2:2482541-2482560 Msa0049310:intron 45.0%
! ACTCCCTTTTATGTGTAGGC+TGG - chr1_2:2482806-2482825 Msa0049310:intron 45.0%
CCACCAGCCTACACATAAAA+GGG + chr1_2:2482812-2482831 None:intergenic 45.0%
TCCACCAGCCTACACATAAA+AGG + chr1_2:2482813-2482832 None:intergenic 45.0%
TCACTAGGTGCAAGCTTAAG+TGG - chr1_2:2482866-2482885 Msa0049310:intron 45.0%
CATTGGTGTATGTCAGTCCA+TGG + chr1_2:2483258-2483277 None:intergenic 45.0%
TGTAAAGGGAGCCACACTAT+AGG - chr1_2:2483470-2483489 Msa0049310:CDS 45.0%
GCCACACTATAGGAAAGTCA+AGG - chr1_2:2483480-2483499 Msa0049310:CDS 45.0%
GTAGAGTCTTTGCCTAAAGC+TGG + chr1_2:2483510-2483529 None:intergenic 45.0%
! CTTGCTTGCCATTTCCAGTT+TGG + chr1_2:2483535-2483554 None:intergenic 45.0%
CGCACTCAATGTCCAAAATC+TGG - chr1_2:2483590-2483609 Msa0049310:intron 45.0%
CGCGAAGTCTATGATCAAGA+TGG - chr1_2:2483799-2483818 Msa0049310:intron 45.0%
TCTCCTTTGACAGGTTCAAG+GGG - chr1_2:2483830-2483849 Msa0049310:CDS 45.0%
TTTCCCCTTGAACCTGTCAA+AGG + chr1_2:2483836-2483855 None:intergenic 45.0%
CAAAGTGGACACACTAGCAA+TGG + chr1_2:2484000-2484019 None:intergenic 45.0%
CATTGCTAGTGTGTCCACTT+TGG - chr1_2:2483998-2484017 Msa0049310:CDS 45.0%
AGGTTCCTTTGCAACAGCGT+TGG + chr1_2:2482113-2482132 None:intergenic 50.0%
! CCCTTTTATGTGTAGGCTGG+TGG - chr1_2:2482809-2482828 Msa0049310:intron 50.0%
AGTGAGTCTCTTCTGCCTAG+AGG + chr1_2:2482851-2482870 None:intergenic 50.0%
CTAGGCAGAAGAGACTCACT+AGG - chr1_2:2482851-2482870 Msa0049310:intron 50.0%
TGGGGCTGGAATGTTGTTGT+TGG + chr1_2:2482894-2482913 None:intergenic 50.0%
!! TGGAATGTGTTGTTTGGGGC+TGG + chr1_2:2482908-2482927 None:intergenic 50.0%
AGTCAAGGTGCACCAGCTTT+AGG - chr1_2:2483495-2483514 Msa0049310:CDS 50.0%
AGGTTCCTTTGCAACAGCGT+TGG + chr1_2:2482113-2482132 None:intergenic 50.0%
! CCCTTTTATGTGTAGGCTGG+TGG - chr1_2:2482809-2482828 Msa0049310:intron 50.0%
AGTGAGTCTCTTCTGCCTAG+AGG + chr1_2:2482851-2482870 None:intergenic 50.0%
CTAGGCAGAAGAGACTCACT+AGG - chr1_2:2482851-2482870 Msa0049310:intron 50.0%
TGGGGCTGGAATGTTGTTGT+TGG + chr1_2:2482894-2482913 None:intergenic 50.0%
!! TGGAATGTGTTGTTTGGGGC+TGG + chr1_2:2482908-2482927 None:intergenic 50.0%
AGTCAAGGTGCACCAGCTTT+AGG - chr1_2:2483495-2483514 Msa0049310:CDS 50.0%
!! TGCAACAGCGTTGGCAAGGA+TGG + chr1_2:2482104-2482123 None:intergenic 55.0%
!! CCTTTGCAACAGCGTTGGCA+AGG + chr1_2:2482108-2482127 None:intergenic 55.0%
CCTTGCCAACGCTGTTGCAA+AGG - chr1_2:2482105-2482124 Msa0049310:exon 55.0%
! TGTAGGCTGGTGGACCAAAC+TGG - chr1_2:2482819-2482838 Msa0049310:intron 55.0%
! GTAGGCTGGTGGACCAAACT+GGG - chr1_2:2482820-2482839 Msa0049310:intron 55.0%
!! CCTAGAGGCACTTCCCAGTT+TGG + chr1_2:2482836-2482855 None:intergenic 55.0%
!! CCAAACTGGGAAGTGCCTCT+AGG - chr1_2:2482833-2482852 Msa0049310:intron 55.0%
!! TGCAACAGCGTTGGCAAGGA+TGG + chr1_2:2482104-2482123 None:intergenic 55.0%
!! CCTTTGCAACAGCGTTGGCA+AGG + chr1_2:2482108-2482127 None:intergenic 55.0%
CCTTGCCAACGCTGTTGCAA+AGG - chr1_2:2482105-2482124 Msa0049310:exon 55.0%
! TGTAGGCTGGTGGACCAAAC+TGG - chr1_2:2482819-2482838 Msa0049310:intron 55.0%
! GTAGGCTGGTGGACCAAACT+GGG - chr1_2:2482820-2482839 Msa0049310:intron 55.0%
!! CCTAGAGGCACTTCCCAGTT+TGG + chr1_2:2482836-2482855 None:intergenic 55.0%
!! CCAAACTGGGAAGTGCCTCT+AGG - chr1_2:2482833-2482852 Msa0049310:intron 55.0%
Chromosome Type Strat End Strand Name
chr1_2 gene 2481880 2484118 2481880 ID=Msa0049310;Name=Msa0049310
chr1_2 mRNA 2481880 2484118 2481880 ID=Msa0049310-mRNA-1;Parent=Msa0049310;Name=Msa0049310-mRNA-1;_AED=0.05;_eAED=0.05;_QI=79|1|1|1|1|1|4|226|332
chr1_2 exon 2481880 2482521 2481880 ID=Msa0049310-mRNA-1:exon:517;Parent=Msa0049310-mRNA-1
chr1_2 exon 2483009 2483174 2483009 ID=Msa0049310-mRNA-1:exon:516;Parent=Msa0049310-mRNA-1
chr1_2 exon 2483406 2483597 2483406 ID=Msa0049310-mRNA-1:exon:515;Parent=Msa0049310-mRNA-1
chr1_2 exon 2483815 2484118 2483815 ID=Msa0049310-mRNA-1:exon:514;Parent=Msa0049310-mRNA-1
chr1_2 five_prime_UTR 2484040 2484118 2484040 ID=Msa0049310-mRNA-1:five_prime_utr;Parent=Msa0049310-mRNA-1
chr1_2 CDS 2483815 2484039 2483815 ID=Msa0049310-mRNA-1:cds;Parent=Msa0049310-mRNA-1
chr1_2 CDS 2483406 2483597 2483406 ID=Msa0049310-mRNA-1:cds;Parent=Msa0049310-mRNA-1
chr1_2 CDS 2483009 2483174 2483009 ID=Msa0049310-mRNA-1:cds;Parent=Msa0049310-mRNA-1
chr1_2 CDS 2482106 2482521 2482106 ID=Msa0049310-mRNA-1:cds;Parent=Msa0049310-mRNA-1
chr1_2 three_prime_UTR 2481880 2482105 2481880 ID=Msa0049310-mRNA-1:three_prime_utr;Parent=Msa0049310-mRNA-1
Gene Sequence

>Msa0049310

ATGGCAAATTCTTTGAGCTTTCTCATGCTTCTTTCTTTACTGGCATTTGCTCCTTTTTGCCTCTGTCATAAGAAAATGGGTTCTTACCTTTATCCACAGTTTTATGACTATTCATGTCCACAAGCTCAGAATATTGTTAAGTCCATCCTTGCCAACGCTGTTGCAAAGGAACCTCGTATAGCTGCTTCACTTTTGAGACTTCATTTCCATGACTGTTTTGTCAAGGGTTGTGATGCTTCAATATTGTTAGATAACAGTGGAAGCATTATTAGTGAGAAGGGATCAAATCCTAACCGTAATTCAGCTAGAGGATTTGAGGTCATTGATGAAATTAAATATGCACTAGAAAAAGAATGTCCTCATACAGTGTCTTGTGCTGACATTCTGGCTATAGCTGCTAGAGATTCAACTGTTCTTGCTGGTGGACCAAACTGGGAAGTGCCTCTAGGCAGAAGAGACTCACTAGGTGCAAGCTTAAGTGGTTCCAACAACAACATTCCAGCCCCAAACAACACATTCCAGACAATCCTGACTAAATTCAAACTTCAAGGACTTGACATTGTTGATCTTGTTGCTCTTTCTGGGAGCCACACTATAGGAAAGTCAAGGTGCACCAGCTTTAGGCAAAGACTCTACAACCAAACTGGAAATGGCAAGCAAGATTACACTCTTGATCAATACTATGCTGCTGAATTGCGCACTCAATGTCCAAAATCTGGTGGTGACCAAAATCTGTTCTTCCTAGACTATGTCACACCAACAAAATTCGACAACAATTACTTCAAGAACCTATTGGCTTACAAGGGACTATTGAGCTCTGATGAAATTTTGTTGACAATGAATCAAGAATCAGCTGAGTTGGTGAAATTGTATGCCGAGAGAAATGATCTTTTCTTTGAGCAATTCGCGAAGTCTATGATCAAGATGGGAAATATATCTCCTTTGACAGGTTCAAGGGGAAACATTAGACCAAATTGCAGGGTGATTAATACTTGGTGA
Protein sequence

>Msa0049310

MANSLSFLMLLSLLAFAPFCLCHKKMGSYLYPQFYDYSCPQAQNIVKSILANAVAKEPRIAASLLRLHFHDCFVKGCDASILLDNSGSIISEKGSNPNRNSARGFEVIDEIKYALEKECPHTVSCADILAIAARDSTVLAGGPNWEVPLGRRDSLGASLSGSNNNIPAPNNTFQTILTKFKLQGLDIVDLVALSGSHTIGKSRCTSFRQRLYNQTGNGKQDYTLDQYYAAELRTQCPKSGGDQNLFFLDYVTPTKFDNNYFKNLLAYKGLLSSDEILLTMNQESAELVKLYAERNDLFFEQFAKSMIKMGNISPLTGSRGNIRPNCRVINTW*