Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0342660 | XP_013464999.1 | 85.569 | 492 | 66 | 3 | 3 | 493 | 1 | 488 | 0.0 | 868 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0342660 | sp|Q9ZWB4|3AT1_ARATH | 40.373 | 483 | 257 | 14 | 19 | 492 | 9 | 469 | 2.24e-104 | 323 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0342660 | A0A072VAG9 | 85.569 | 492 | 66 | 3 | 3 | 493 | 1 | 488 | 0.0 | 868 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0010150 | Msa0342660 | 0.805177 | 1.513793e-49 | -8.615850e-47 |
| Msa0014590 | Msa0342660 | 0.832382 | 9.758819e-56 | -8.615850e-47 |
| Msa0025700 | Msa0342660 | 0.807841 | 4.149954e-50 | -8.615850e-47 |
| Msa0062010 | Msa0342660 | 0.810829 | 9.488812e-51 | -8.615850e-47 |
| Msa0063540 | Msa0342660 | 0.830014 | 3.728001e-55 | -8.615850e-47 |
| Msa0108350 | Msa0342660 | 0.816323 | 5.868509e-52 | -8.615850e-47 |
| Msa0120050 | Msa0342660 | 0.801469 | 8.874084e-49 | -8.615850e-47 |
| Msa0125600 | Msa0342660 | 0.822740 | 2.015066e-53 | -8.615850e-47 |
| Msa0150910 | Msa0342660 | 0.812317 | 4.506142e-51 | -8.615850e-47 |
| Msa0150920 | Msa0342660 | 0.807856 | 4.119189e-50 | -8.615850e-47 |
| Msa0163340 | Msa0342660 | 0.808284 | 3.340707e-50 | -8.615850e-47 |
| Msa0190890 | Msa0342660 | 0.822740 | 2.015608e-53 | -8.615850e-47 |
| Msa0220090 | Msa0342660 | 0.866758 | 2.255593e-65 | -8.615850e-47 |
| Msa0233210 | Msa0342660 | 0.803095 | 4.105906e-49 | -8.615850e-47 |
| Msa0238110 | Msa0342660 | 0.801803 | 7.578070e-49 | -8.615850e-47 |
| Msa0261400 | Msa0342660 | 0.864483 | 1.177279e-64 | -8.615850e-47 |
| Msa0274250 | Msa0342660 | 0.823813 | 1.131790e-53 | -8.615850e-47 |
| Msa0278480 | Msa0342660 | 0.801128 | 1.042104e-48 | -8.615850e-47 |
| Msa0288540 | Msa0342660 | 0.801332 | 9.464561e-49 | -8.615850e-47 |
| Msa0299030 | Msa0342660 | 0.900653 | 5.909075e-78 | -8.615850e-47 |
| Msa0314440 | Msa0342660 | 0.823026 | 1.728590e-53 | -8.615850e-47 |
| Msa0328090 | Msa0342660 | 0.808702 | 2.720731e-50 | -8.615850e-47 |
| Msa0342660 | Msa0374040 | 0.802019 | 6.843743e-49 | -8.615850e-47 |
| Msa0342660 | Msa0375860 | 0.806041 | 9.973750e-50 | -8.615850e-47 |
| Msa0342660 | Msa0396860 | 0.805902 | 1.066441e-49 | -8.615850e-47 |
| Msa0342660 | Msa0523720 | 0.814528 | 1.471712e-51 | -8.615850e-47 |
| Msa0342660 | Msa0535570 | 0.810407 | 1.170530e-50 | -8.615850e-47 |
| Msa0342660 | Msa0549170 | 0.814490 | 1.500309e-51 | -8.615850e-47 |
| Msa0342660 | Msa0580100 | 0.804666 | 1.936064e-49 | -8.615850e-47 |
| Msa0342660 | Msa0591490 | 0.807481 | 4.948718e-50 | -8.615850e-47 |
| Msa0342660 | Msa0606470 | 0.801859 | 7.380339e-49 | -8.615850e-47 |
| Msa0342660 | Msa0643840 | 0.802947 | 4.404402e-49 | -8.615850e-47 |
| Msa0342660 | Msa0645370 | 0.800487 | 1.408536e-48 | -8.615850e-47 |
| Msa0342660 | Msa0667600 | 0.800509 | 1.393792e-48 | -8.615850e-47 |
| Msa0342660 | Msa0684560 | 0.800729 | 1.257380e-48 | -8.615850e-47 |
| Msa0342660 | Msa0768670 | 0.807259 | 5.516563e-50 | -8.615850e-47 |
| Msa0342660 | Msa0768720 | 0.817070 | 3.989864e-52 | -8.615850e-47 |
| Msa0342660 | Msa0804170 | 0.815381 | 9.520315e-52 | -8.615850e-47 |
| Msa0342660 | Msa0806930 | 0.804746 | 1.863232e-49 | -8.615850e-47 |
| Msa0342660 | Msa0814160 | 0.840529 | 8.229309e-58 | -8.615850e-47 |
| Msa0342660 | Msa0854840 | 0.803023 | 4.247539e-49 | -8.615850e-47 |
| Msa0342660 | Msa0861730 | 0.811605 | 6.440530e-51 | -8.615850e-47 |
| Msa0342660 | Msa0898830 | -0.813499 | 2.482123e-51 | -8.615850e-47 |
| Msa0342660 | Msa0913550 | 0.800318 | 1.524373e-48 | -8.615850e-47 |
| Msa0342660 | Msa0932140 | 0.812917 | 3.330787e-51 | -8.615850e-47 |
| Msa0342660 | Msa0946010 | 0.815308 | 9.879265e-52 | -8.615850e-47 |
| Msa0342660 | Msa0987640 | 0.800461 | 1.425746e-48 | -8.615850e-47 |
| Msa0342660 | Msa1006170 | 0.804496 | 2.100805e-49 | -8.615850e-47 |
| Msa0342660 | Msa1030320 | 0.817106 | 3.915775e-52 | -8.615850e-47 |
| Msa0342660 | Msa1055450 | 0.803799 | 2.933975e-49 | -8.615850e-47 |
| Msa0342660 | Msa1061670 | 0.811352 | 7.307891e-51 | -8.615850e-47 |
| Msa0342660 | Msa1069350 | 0.805881 | 1.077761e-49 | -8.615850e-47 |
| Msa0342660 | Msa1087370 | 0.816798 | 4.592648e-52 | -8.615850e-47 |
| Msa0342660 | Msa1089300 | 0.824584 | 7.457391e-54 | -8.615850e-47 |
| Msa0342660 | Msa1106680 | 0.822070 | 2.883473e-53 | -8.615850e-47 |
| Msa0342660 | Msa1106960 | 0.808538 | 2.948257e-50 | -8.615850e-47 |
| Msa0342660 | Msa1120680 | 0.805725 | 1.162079e-49 | -8.615850e-47 |
| Msa0342660 | Msa1148210 | 0.802391 | 5.735782e-49 | -8.615850e-47 |
| Msa0342660 | Msa1149570 | -0.800891 | 1.165193e-48 | -8.615850e-47 |
| Msa0342660 | Msa1156240 | 0.818947 | 1.502458e-52 | -8.615850e-47 |
| Msa0342660 | Msa1157210 | 0.823189 | 1.583996e-53 | -8.615850e-47 |
| Msa0342660 | Msa1170340 | 0.815711 | 8.038661e-52 | -8.615850e-47 |
| Msa0342660 | Msa1181090 | 0.813034 | 3.139425e-51 | -8.615850e-47 |
| Msa0342660 | Msa1191640 | 0.814667 | 1.371042e-51 | -8.615850e-47 |
| Msa0342660 | Msa1225850 | 0.835453 | 1.663666e-56 | -8.615850e-47 |
| Msa0342660 | Msa1323120 | 0.806659 | 7.387492e-50 | -8.615850e-47 |
| Msa0342660 | Msa1357860 | 0.810397 | 1.176582e-50 | -8.615850e-47 |
| Msa0342660 | Msa1364190 | 0.842214 | 2.964688e-58 | -8.615850e-47 |
| Msa0342660 | Msa1387480 | 0.802299 | 5.993790e-49 | -8.615850e-47 |
| Msa0342660 | Msa1406840 | 0.848035 | 7.921271e-60 | -8.615850e-47 |
| Msa0342660 | Msa1407670 | 0.823916 | 1.070667e-53 | -8.615850e-47 |
| Msa0342660 | Msa1411550 | 0.837014 | 6.671394e-57 | -8.615850e-47 |
| Msa0342660 | Msa1413020 | 0.816210 | 6.219217e-52 | -8.615850e-47 |
| Msa0342660 | Msa1449770 | 0.822456 | 2.346102e-53 | -8.615850e-47 |
| Msa0342660 | Msa1451660 | 0.803973 | 2.698854e-49 | -8.615850e-47 |
| Msa0342660 | Msa1455360 | 0.804341 | 2.263345e-49 | -8.615850e-47 |
| Msa0342660 | Msa1459610 | 0.802743 | 4.854760e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0342660 | MtrunA17_Chr2g0323511 | 85.569 | 492 | 66 | 3 | 3 | 493 | 1 | 488 | 0.0 | 868 |
| Msa0342660 | MtrunA17_Chr2g0323471 | 69.200 | 500 | 128 | 7 | 3 | 493 | 1 | 483 | 0.0 | 669 |
| Msa0342660 | MtrunA17_Chr8g0339641 | 66.598 | 488 | 139 | 11 | 16 | 491 | 1 | 476 | 0.0 | 618 |
| Msa0342660 | MtrunA17_Chr7g0219881 | 42.589 | 479 | 243 | 9 | 18 | 487 | 5 | 460 | 1.32e-122 | 366 |
| Msa0342660 | MtrunA17_Chr3g0083761 | 42.355 | 484 | 250 | 10 | 18 | 493 | 5 | 467 | 1.60e-120 | 361 |
| Msa0342660 | MtrunA17_Chr2g0323441 | 90.805 | 174 | 15 | 1 | 18 | 190 | 2 | 175 | 1.96e-110 | 325 |
| Msa0342660 | MtrunA17_Chr3g0087901 | 36.140 | 487 | 274 | 10 | 16 | 490 | 6 | 467 | 4.48e-101 | 311 |
| Msa0342660 | MtrunA17_Chr7g0219331 | 38.200 | 500 | 262 | 15 | 1 | 483 | 78 | 547 | 5.16e-90 | 285 |
| Msa0342660 | MtrunA17_Chr2g0323421 | 35.091 | 493 | 273 | 14 | 14 | 490 | 51 | 512 | 5.59e-88 | 279 |
| Msa0342660 | MtrunA17_Chr2g0323501 | 35.118 | 467 | 261 | 13 | 41 | 490 | 37 | 478 | 2.10e-85 | 271 |
| Msa0342660 | MtrunA17_Chr6g0455361 | 35.934 | 487 | 274 | 11 | 12 | 490 | 4 | 460 | 1.07e-81 | 261 |
| Msa0342660 | MtrunA17_Chr3g0124341 | 35.091 | 493 | 268 | 17 | 19 | 488 | 10 | 473 | 2.21e-81 | 260 |
| Msa0342660 | MtrunA17_Chr2g0323481 | 33.987 | 459 | 266 | 10 | 45 | 490 | 30 | 464 | 1.15e-80 | 258 |
| Msa0342660 | MtrunA17_Chr7g0219301 | 37.500 | 480 | 255 | 15 | 19 | 483 | 5 | 454 | 3.01e-80 | 267 |
| Msa0342660 | MtrunA17_Chr7g0219301 | 33.969 | 262 | 145 | 7 | 232 | 483 | 634 | 877 | 1.14e-31 | 129 |
| Msa0342660 | MtrunA17_Chr7g0219301 | 45.133 | 113 | 55 | 2 | 23 | 130 | 514 | 624 | 7.16e-22 | 99.8 |
| Msa0342660 | MtrunA17_Chr6g0455341 | 34.702 | 487 | 275 | 12 | 17 | 490 | 7 | 463 | 1.74e-76 | 247 |
| Msa0342660 | MtrunA17_Chr7g0219291 | 33.069 | 505 | 282 | 15 | 4 | 489 | 350 | 817 | 1.65e-71 | 243 |
| Msa0342660 | MtrunA17_Chr7g0219291 | 25.731 | 342 | 201 | 12 | 150 | 473 | 8 | 314 | 1.04e-23 | 105 |
| Msa0342660 | MtrunA17_Chr7g0219241 | 32.371 | 485 | 295 | 12 | 17 | 487 | 8 | 473 | 4.69e-70 | 231 |
| Msa0342660 | MtrunA17_Chr6g0454761 | 32.158 | 482 | 280 | 10 | 23 | 491 | 11 | 458 | 1.29e-69 | 239 |
| Msa0342660 | MtrunA17_Chr6g0454761 | 32.151 | 451 | 276 | 7 | 45 | 490 | 520 | 945 | 5.96e-65 | 226 |
| Msa0342660 | MtrunA17_Chr7g0219181 | 31.936 | 501 | 290 | 15 | 15 | 492 | 5 | 477 | 2.45e-67 | 224 |
| Msa0342660 | MtrunA17_Chr7g0219121 | 30.000 | 490 | 295 | 14 | 23 | 487 | 11 | 477 | 5.55e-65 | 218 |
| Msa0342660 | MtrunA17_Chr6g0455351 | 33.806 | 494 | 243 | 16 | 12 | 490 | 4 | 428 | 2.19e-62 | 209 |
| Msa0342660 | MtrunA17_Chr3g0092011 | 34.783 | 276 | 154 | 9 | 19 | 284 | 4 | 263 | 8.51e-42 | 150 |
| Msa0342660 | MtrunA17_Chr7g0219101 | 27.632 | 456 | 265 | 14 | 42 | 487 | 30 | 430 | 2.06e-41 | 153 |
| Msa0342660 | MtrunA17_Chr2g0323491 | 80.723 | 83 | 16 | 0 | 411 | 493 | 1 | 83 | 5.26e-36 | 128 |
| Msa0342660 | MtrunA17_Chr7g0219211 | 36.889 | 225 | 122 | 7 | 15 | 234 | 6 | 215 | 8.14e-31 | 122 |
| Msa0342660 | MtrunA17_Chr7g0219191 | 35.545 | 211 | 118 | 6 | 37 | 242 | 15 | 212 | 9.22e-28 | 110 |
| Msa0342660 | MtrunA17_Chr7g0219221 | 36.424 | 151 | 95 | 1 | 338 | 487 | 8 | 158 | 2.40e-27 | 107 |
| Msa0342660 | MtrunA17_Chr2g0323451 | 60.465 | 86 | 26 | 2 | 299 | 383 | 1 | 79 | 3.77e-27 | 104 |
| Msa0342660 | MtrunA17_Chr7g0219341 | 39.726 | 146 | 78 | 3 | 343 | 483 | 6 | 146 | 7.37e-26 | 103 |
| Msa0342660 | MtrunA17_Chr7g0219251 | 38.202 | 178 | 96 | 5 | 18 | 191 | 7 | 174 | 9.88e-26 | 103 |
| Msa0342660 | MtrunA17_Chr7g0219311 | 37.857 | 140 | 85 | 2 | 331 | 469 | 6 | 144 | 3.11e-24 | 98.6 |
| Msa0342660 | MtrunA17_Chr7g0219351 | 33.333 | 225 | 134 | 8 | 87 | 305 | 15 | 229 | 3.79e-23 | 97.8 |
| Msa0342660 | MtrunA17_Chr2g0323461 | 84.000 | 50 | 8 | 0 | 413 | 462 | 5 | 54 | 1.65e-22 | 90.9 |
| Msa0342660 | MtrunA17_Chr8g0354371 | 25.926 | 459 | 273 | 15 | 41 | 490 | 30 | 430 | 2.71e-21 | 96.3 |
| Msa0342660 | MtrunA17_Chr7g0219201 | 31.707 | 205 | 127 | 3 | 286 | 487 | 8 | 202 | 9.48e-21 | 90.5 |
| Msa0342660 | MtrunA17_Chr4g0010331 | 24.806 | 387 | 245 | 11 | 58 | 439 | 41 | 386 | 1.59e-20 | 94.0 |
| Msa0342660 | MtrunA17_Chr6g0467861 | 24.798 | 496 | 304 | 17 | 10 | 476 | 39 | 494 | 1.63e-17 | 85.1 |
| Msa0342660 | MtrunA17_Chr4g0010311 | 24.537 | 432 | 275 | 15 | 17 | 439 | 3 | 392 | 1.81e-17 | 84.7 |
| Msa0342660 | MtrunA17_Chr4g0010361 | 22.955 | 379 | 256 | 11 | 67 | 439 | 45 | 393 | 5.72e-17 | 83.2 |
| Msa0342660 | MtrunA17_Chr4g0010381 | 24.939 | 413 | 251 | 15 | 41 | 439 | 24 | 391 | 6.74e-17 | 82.8 |
| Msa0342660 | MtrunA17_Chr4g0053111 | 22.904 | 489 | 311 | 18 | 17 | 483 | 3 | 447 | 6.98e-17 | 82.8 |
| Msa0342660 | MtrunA17_Chr6g0454741 | 33.125 | 160 | 84 | 5 | 88 | 242 | 22 | 163 | 1.82e-16 | 79.0 |
| Msa0342660 | MtrunA17_Chr3g0087221 | 24.138 | 406 | 271 | 11 | 41 | 439 | 24 | 399 | 6.31e-16 | 80.1 |
| Msa0342660 | MtrunA17_Chr4g0010121 | 23.474 | 426 | 249 | 16 | 35 | 439 | 63 | 432 | 8.34e-16 | 79.7 |
| Msa0342660 | MtrunA17_Chr4g0053061 | 21.978 | 455 | 285 | 15 | 37 | 469 | 53 | 459 | 8.41e-16 | 79.7 |
| Msa0342660 | MtrunA17_Chr3g0113181 | 21.868 | 439 | 274 | 13 | 71 | 479 | 60 | 459 | 2.51e-15 | 78.2 |
| Msa0342660 | MtrunA17_Chr8g0374911 | 22.418 | 455 | 281 | 19 | 38 | 469 | 47 | 452 | 3.18e-15 | 77.8 |
| Msa0342660 | MtrunA17_Chr7g0253501 | 22.674 | 516 | 311 | 19 | 18 | 495 | 1 | 466 | 4.49e-15 | 77.4 |
| Msa0342660 | MtrunA17_Chr3g0092001 | 34.711 | 121 | 76 | 2 | 368 | 488 | 1 | 118 | 9.58e-15 | 70.9 |
| Msa0342660 | MtrunA17_Chr3g0132001 | 22.738 | 409 | 266 | 10 | 76 | 479 | 65 | 428 | 1.62e-14 | 75.5 |
| Msa0342660 | MtrunA17_Chr7g0273731 | 22.546 | 377 | 237 | 10 | 76 | 444 | 147 | 476 | 4.33e-14 | 74.7 |
| Msa0342660 | MtrunA17_Chr5g0433641 | 24.599 | 374 | 226 | 13 | 74 | 438 | 62 | 388 | 6.20e-14 | 73.9 |
| Msa0342660 | MtrunA17_Chr8g0386141 | 24.533 | 428 | 255 | 17 | 76 | 491 | 58 | 429 | 6.26e-14 | 73.9 |
| Msa0342660 | MtrunA17_Chr2g0334001 | 23.990 | 396 | 239 | 17 | 57 | 439 | 39 | 385 | 7.37e-14 | 73.6 |
| Msa0342660 | MtrunA17_Chr3g0134041 | 23.661 | 448 | 287 | 17 | 41 | 476 | 30 | 434 | 3.54e-13 | 71.6 |
| Msa0342660 | MtrunA17_Chr7g0273791 | 23.196 | 388 | 251 | 10 | 54 | 438 | 44 | 387 | 1.42e-12 | 69.7 |
| Msa0342660 | MtrunA17_Chr3g0134071 | 23.514 | 387 | 246 | 15 | 63 | 438 | 56 | 403 | 6.52e-12 | 67.8 |
| Msa0342660 | MtrunA17_Chr7g0253531 | 23.930 | 514 | 300 | 22 | 18 | 492 | 1 | 462 | 9.26e-12 | 67.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0342660 | AT1G03940.1 | 40.373 | 483 | 257 | 14 | 19 | 492 | 9 | 469 | 2.28e-105 | 323 |
| Msa0342660 | AT1G03495.1 | 40.449 | 356 | 183 | 11 | 20 | 369 | 10 | 342 | 7.71e-72 | 232 |
| Msa0342660 | AT3G29670.1 | 31.185 | 481 | 288 | 13 | 17 | 487 | 2 | 449 | 4.49e-65 | 218 |
| Msa0342660 | AT5G61160.1 | 32.245 | 490 | 278 | 14 | 16 | 489 | 1 | 452 | 4.61e-65 | 218 |
| Msa0342660 | AT3G29635.1 | 31.481 | 486 | 293 | 12 | 16 | 490 | 1 | 457 | 4.41e-63 | 213 |
| Msa0342660 | AT3G29680.1 | 31.185 | 481 | 288 | 12 | 17 | 488 | 2 | 448 | 1.15e-59 | 203 |
| Msa0342660 | AT5G39090.1 | 31.933 | 476 | 283 | 14 | 17 | 485 | 4 | 445 | 8.30e-59 | 201 |
| Msa0342660 | AT3G29590.1 | 31.828 | 487 | 273 | 18 | 17 | 488 | 7 | 449 | 2.65e-58 | 199 |
| Msa0342660 | AT5G39050.1 | 29.518 | 498 | 303 | 13 | 10 | 489 | 2 | 469 | 4.88e-55 | 191 |
| Msa0342660 | AT5G39080.1 | 29.363 | 487 | 285 | 15 | 17 | 480 | 4 | 454 | 3.73e-53 | 186 |
| Msa0342660 | AT2G19070.1 | 24.060 | 399 | 248 | 11 | 59 | 438 | 40 | 402 | 3.54e-19 | 90.5 |
| Msa0342660 | AT3G29690.1 | 32.716 | 162 | 97 | 4 | 332 | 489 | 27 | 180 | 5.31e-16 | 76.6 |
| Msa0342660 | AT3G50270.1 | 24.545 | 440 | 263 | 18 | 20 | 439 | 7 | 397 | 4.05e-15 | 77.8 |
| Msa0342660 | AT3G48720.1 | 21.198 | 434 | 284 | 10 | 54 | 479 | 41 | 424 | 1.64e-14 | 75.9 |
| Msa0342660 | AT5G41040.2 | 21.028 | 428 | 281 | 12 | 71 | 490 | 63 | 441 | 1.74e-13 | 72.8 |
| Msa0342660 | AT5G41040.1 | 21.163 | 430 | 278 | 13 | 71 | 490 | 79 | 457 | 2.44e-13 | 72.4 |
| Msa0342660 | AT3G50300.1 | 24.658 | 438 | 265 | 17 | 18 | 439 | 4 | 392 | 4.00e-13 | 71.6 |
| Msa0342660 | AT3G29720.1 | 29.897 | 194 | 114 | 7 | 116 | 305 | 26 | 201 | 2.44e-12 | 67.0 |
| Msa0342660 | AT1G31490.1 | 22.864 | 398 | 234 | 14 | 58 | 439 | 43 | 383 | 4.62e-11 | 65.5 |
Find 104 sgRNAs with CRISPR-Local
Find 240 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCATCATTTCATGAAATTT+TGG | 0.059044 | 3_1:+573213 | Msa0342660:CDS |
| GTCTCATAAACAGCCAATTT+TGG | 0.236198 | 3_1:-573914 | None:intergenic |
| GCTGTTTATGAGACTGATTT+TGG | 0.237069 | 3_1:+573923 | Msa0342660:CDS |
| AATCGTTGATGCCTAATTAT+AGG | 0.244855 | 3_1:+573846 | Msa0342660:CDS |
| ATACGAGGTGGAGGTAAATT+TGG | 0.246555 | 3_1:-573074 | None:intergenic |
| GGAGGAGTGTTATGGGAATT+TGG | 0.249016 | 3_1:-572936 | None:intergenic |
| TTAGAGAATTTCCTATAATT+AGG | 0.272716 | 3_1:-573857 | None:intergenic |
| TAACCCATTTCTTCAACTTC+TGG | 0.280416 | 3_1:-573478 | None:intergenic |
| GTTGGTGATGGAACTAAATT+TGG | 0.291404 | 3_1:-572729 | None:intergenic |
| GGTTGCTGGTTCACCAAAAT+TGG | 0.296365 | 3_1:+573901 | Msa0342660:CDS |
| TATCACCTTCATGCTGAATT+TGG | 0.301546 | 3_1:-572682 | None:intergenic |
| GTGACTTGAATAGCCATTAT+AGG | 0.302545 | 3_1:-573122 | None:intergenic |
| TTTAAGAATGATGCTTTGTT+AGG | 0.320839 | 3_1:+573818 | Msa0342660:CDS |
| TTGTAACAAGTTCCTTGATT+TGG | 0.331236 | 3_1:+573549 | Msa0342660:CDS |
| TTATAGGAAATTCTCTAAAC+CGG | 0.347519 | 3_1:+573862 | Msa0342660:CDS |
| CATTCGTGTAATCCCTATAA+TGG | 0.357080 | 3_1:+573109 | Msa0342660:CDS |
| TGACTTGAATAGCCATTATA+GGG | 0.360665 | 3_1:-573121 | None:intergenic |
| ACGTCTCTTGTAGTGGTTGC+TGG | 0.360866 | 3_1:+573887 | Msa0342660:CDS |
| AGAAATGGAATCTGCGGGTT+TGG | 0.362780 | 3_1:+573397 | Msa0342660:CDS |
| AAGTCCAGAAGTTGAAGAAA+TGG | 0.376086 | 3_1:+573474 | Msa0342660:CDS |
| ATTTCCCGTCTGCAGCAATA+TGG | 0.378457 | 3_1:-573187 | None:intergenic |
| TGAACTGCATCAGATTTCTT+AGG | 0.382814 | 3_1:-573956 | None:intergenic |
| TAGAAGAAGATACGATGAAT+TGG | 0.382944 | 3_1:-572798 | None:intergenic |
| TATACAAGTTTAAGACCCTT+TGG | 0.383445 | 3_1:-573344 | None:intergenic |
| AAAGAAGTGTTGGAGGGTTA+AGG | 0.387404 | 3_1:-572886 | None:intergenic |
| TCTCTTTCTGATTGCAGAGA+TGG | 0.388820 | 3_1:+574001 | Msa0342660:CDS |
| ATTCACAAGATGCTCAAAAC+TGG | 0.402278 | 3_1:+573039 | Msa0342660:CDS |
| GTATGTAAGGAGGAGTGTTA+TGG | 0.407860 | 3_1:-572944 | None:intergenic |
| ATTTGGAGGGATGATGAGGT+TGG | 0.424629 | 3_1:-572919 | None:intergenic |
| GGAAAGTGAGTGTTTGAGAA+TGG | 0.424878 | 3_1:-572865 | None:intergenic |
| TATGTAAGGAGGAGTGTTAT+GGG | 0.427366 | 3_1:-572943 | None:intergenic |
| GATGATGAGGTTGGAGGTGA+AGG | 0.429029 | 3_1:-572910 | None:intergenic |
| GAATGGGAAGTGTTGTTTGT+AGG | 0.432621 | 3_1:-572848 | None:intergenic |
| AGATTCTGTATCAAAAGAAA+TGG | 0.440390 | 3_1:+573382 | Msa0342660:CDS |
| TGGTATGTCGAAGAAAGTTA+AGG | 0.445120 | 3_1:-572760 | None:intergenic |
| CTTTCTGATTGCAGAGATGG+TGG | 0.446881 | 3_1:+574004 | Msa0342660:CDS |
| GTAAAGAGAGATGAGTTAGT+TGG | 0.455750 | 3_1:+573743 | Msa0342660:CDS |
| GGTGGAGGTGGAATTGAGAT+TGG | 0.460315 | 3_1:+574022 | Msa0342660:CDS |
| CACATAGAGAAACCGGAGTT+CGG | 0.461783 | 3_1:-573152 | None:intergenic |
| GAAAGTGAGTGTTTGAGAAT+GGG | 0.469129 | 3_1:-572864 | None:intergenic |
| AGGTGGAATTGAGATTGGTT+TGG | 0.473934 | 3_1:+574027 | Msa0342660:CDS |
| GTCACTGTTCTTCCGAACTC+CGG | 0.487247 | 3_1:+573140 | Msa0342660:CDS |
| GGTATGTCGAAGAAAGTTAA+GGG | 0.489263 | 3_1:-572759 | None:intergenic |
| AGAAGAAGATACGATGAATT+GGG | 0.491688 | 3_1:-572797 | None:intergenic |
| AGTCCAGAAGTTGAAGAAAT+GGG | 0.492194 | 3_1:+573475 | Msa0342660:CDS |
| ACTGAGGCACATAGAGAAAC+CGG | 0.493039 | 3_1:-573159 | None:intergenic |
| GGGAATTTGGAGGGATGATG+AGG | 0.494796 | 3_1:-572923 | None:intergenic |
| TCATCAAGGTAACGTATGTA+AGG | 0.500527 | 3_1:-572957 | None:intergenic |
| TGAAGGGAAAGAAGTGTTGG+AGG | 0.501627 | 3_1:-572893 | None:intergenic |
| GGGATTGTTGTGGCTTCAAA+TGG | 0.510486 | 3_1:+573773 | Msa0342660:CDS |
| AAATCGAAACGGACAAATCA+AGG | 0.510557 | 3_1:-573979 | None:intergenic |
| TGTAGCATGCGAATGAACTA+AGG | 0.513925 | 3_1:+574112 | Msa0342660:CDS |
| GTTTGTAGGAAGTGATGAGT+TGG | 0.516421 | 3_1:-572834 | None:intergenic |
| AAGGGGAGAATGGTTGGTGA+TGG | 0.521926 | 3_1:-572741 | None:intergenic |
| AGGTGAAGGGAAAGAAGTGT+TGG | 0.523394 | 3_1:-572896 | None:intergenic |
| GGTGATGGAACTAAATTTGG+TGG | 0.531792 | 3_1:-572726 | None:intergenic |
| ACTCTATTTCTTTCATGTGA+AGG | 0.532029 | 3_1:-573314 | None:intergenic |
| AGATTGGTTTGGCTCTTGAG+AGG | 0.535803 | 3_1:+574038 | Msa0342660:CDS |
| GATCATACAAAACCAAATCA+AGG | 0.536579 | 3_1:-573561 | None:intergenic |
| TTGTATGATCAAATCGGAGG+AGG | 0.538608 | 3_1:+573574 | Msa0342660:CDS |
| TGAGGATTCAGCGACGGTGA+AGG | 0.543996 | 3_1:-572991 | None:intergenic |
| TGGAGGGATGATGAGGTTGG+AGG | 0.545689 | 3_1:-572916 | None:intergenic |
| GGTGATAGCAAAAGTGATCA+AGG | 0.548302 | 3_1:+573596 | Msa0342660:CDS |
| AAAGTTAAGGGGAGAATGGT+TGG | 0.550742 | 3_1:-572747 | None:intergenic |
| TCAAAAGAAATGGAATCTGC+GGG | 0.555070 | 3_1:+573392 | Msa0342660:CDS |
| TCGAGATTCTTATGTTAGCA+AGG | 0.560871 | 3_1:+573421 | Msa0342660:CDS |
| GAAGAAAGTTAAGGGGAGAA+TGG | 0.561998 | 3_1:-572751 | None:intergenic |
| GATGAGTTGGATGAGGAAAG+TGG | 0.563879 | 3_1:-572821 | None:intergenic |
| GGAGGTAAATTTGGAACAAG+AGG | 0.565375 | 3_1:-573065 | None:intergenic |
| TACAACCATATTGCTGCAGA+CGG | 0.567282 | 3_1:+573182 | Msa0342660:CDS |
| TCTTGTTCTATACGAGGTGG+AGG | 0.569390 | 3_1:-573083 | None:intergenic |
| ATCAAAAGAAATGGAATCTG+CGG | 0.571655 | 3_1:+573391 | Msa0342660:CDS |
| AAATAGAGTTAAAGATCCAA+AGG | 0.571917 | 3_1:+573328 | Msa0342660:CDS |
| ATGATGAGGTTGGAGGTGAA+GGG | 0.572297 | 3_1:-572909 | None:intergenic |
| ACCGGGTACGTCTCTTGTAG+TGG | 0.574375 | 3_1:+573880 | Msa0342660:CDS |
| GATTGCAGAGATGGTGGAGG+TGG | 0.575491 | 3_1:+574010 | Msa0342660:CDS |
| AATAGAGTTAAAGATCCAAA+GGG | 0.576796 | 3_1:+573329 | Msa0342660:CDS |
| GCAGATTGTCGTGATAGCGT+TGG | 0.581739 | 3_1:+573665 | Msa0342660:CDS |
| AGGAAGTGATGAGTTGGATG+AGG | 0.585446 | 3_1:-572828 | None:intergenic |
| GAAGGGAAAGAAGTGTTGGA+GGG | 0.591041 | 3_1:-572892 | None:intergenic |
| TAACTTTCTTCGACATACCA+TGG | 0.593348 | 3_1:+572763 | Msa0342660:CDS |
| ATCAGAAAGAGAAATCGAAA+CGG | 0.596473 | 3_1:-573990 | None:intergenic |
| GAGTGTTATGGGAATTTGGA+GGG | 0.596912 | 3_1:-572932 | None:intergenic |
| GGAGTGTTATGGGAATTTGG+AGG | 0.601515 | 3_1:-572933 | None:intergenic |
| AGCAAAAGTGATCAAGGTGA+AGG | 0.601720 | 3_1:+573602 | Msa0342660:CDS |
| TCTGATTGCAGAGATGGTGG+AGG | 0.603040 | 3_1:+574007 | Msa0342660:CDS |
| ACAACCATATTGCTGCAGAC+GGG | 0.604720 | 3_1:+573183 | Msa0342660:CDS |
| TATAGGAAATTCTCTAAACC+GGG | 0.606160 | 3_1:+573863 | Msa0342660:CDS |
| TGTATGATCAAATCGGAGGA+GGG | 0.608399 | 3_1:+573575 | Msa0342660:CDS |
| CGAGACCAAATTCAGCATGA+AGG | 0.615814 | 3_1:+572677 | Msa0342660:CDS |
| GTCTGCTGAGGATTCAGCGA+CGG | 0.615979 | 3_1:-572997 | None:intergenic |
| TCATGTGAAGGAAGATCAAG+AGG | 0.624288 | 3_1:-573302 | None:intergenic |
| TTATCTTGTTCTATACGAGG+TGG | 0.627129 | 3_1:-573086 | None:intergenic |
| GATGGAACTAAATTTGGTGG+TGG | 0.629084 | 3_1:-572723 | None:intergenic |
| CAGCAATATGGTTGTAACTG+AGG | 0.640682 | 3_1:-573175 | None:intergenic |
| TTGTATTGCATCTAATGCTG+TGG | 0.648941 | 3_1:+573718 | Msa0342660:CDS |
| TCAAGGTAACGTATGTAAGG+AGG | 0.651289 | 3_1:-572954 | None:intergenic |
| AGGAGATAGAGTCTTCATCA+AGG | 0.656629 | 3_1:-572971 | None:intergenic |
| ACCACTACAAGAGACGTACC+CGG | 0.658474 | 3_1:-573881 | None:intergenic |
| GAGAATGTTGAAGTCTGCTG+AGG | 0.661878 | 3_1:-573009 | None:intergenic |
| ATGTTATCTTGTTCTATACG+AGG | 0.669004 | 3_1:-573089 | None:intergenic |
| GTATGTCGAAGAAAGTTAAG+GGG | 0.670105 | 3_1:-572758 | None:intergenic |
| TGTGAAGGAAGATCAAGAGG+CGG | 0.686663 | 3_1:-573299 | None:intergenic |
| ATTGGGTCACAATAAAACCA+TGG | 0.688914 | 3_1:-572780 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTCATCATTTCATGAAATTT+TGG | + | chr3_1:573213-573232 | Msa0342660:CDS | 20.0% |
| !!! | TCATCATTTCATGAAATTTT+GGG | + | chr3_1:573214-573233 | Msa0342660:CDS | 20.0% |
| !!! | TTTGTTATTGTTTTTTGCTA+TGG | - | chr3_1:573255-573274 | None:intergenic | 20.0% |
| !!! | TCATTACCAAAAACTTATTT+TGG | + | chr3_1:573692-573711 | Msa0342660:CDS | 20.0% |
| !!! | CAATTTCCAAAATAAGTTTT+TGG | - | chr3_1:573701-573720 | None:intergenic | 20.0% |
| !! | TTAGAGAATTTCCTATAATT+AGG | - | chr3_1:573860-573879 | None:intergenic | 20.0% |
| !!! | TTCATCATTTCATGAAATTT+TGG | + | chr3_1:573213-573232 | Msa0342660:CDS | 20.0% |
| !!! | TCATCATTTCATGAAATTTT+GGG | + | chr3_1:573214-573233 | Msa0342660:CDS | 20.0% |
| !!! | TTTGTTATTGTTTTTTGCTA+TGG | - | chr3_1:573255-573274 | None:intergenic | 20.0% |
| !!! | TCATTACCAAAAACTTATTT+TGG | + | chr3_1:573692-573711 | Msa0342660:CDS | 20.0% |
| !!! | CAATTTCCAAAATAAGTTTT+TGG | - | chr3_1:573701-573720 | None:intergenic | 20.0% |
| !! | TTAGAGAATTTCCTATAATT+AGG | - | chr3_1:573860-573879 | None:intergenic | 20.0% |
| ! | AAATAGAGTTAAAGATCCAA+AGG | + | chr3_1:573328-573347 | Msa0342660:CDS | 25.0% |
| ! | AATAGAGTTAAAGATCCAAA+GGG | + | chr3_1:573329-573348 | Msa0342660:CDS | 25.0% |
| ! | AGATTCTGTATCAAAAGAAA+TGG | + | chr3_1:573382-573401 | Msa0342660:CDS | 25.0% |
| !!! | TTGGTTTTGTATGATCAAAT+CGG | + | chr3_1:573568-573587 | Msa0342660:CDS | 25.0% |
| ! | ATGAGTTAGTTGGAAAAAAT+GGG | + | chr3_1:573753-573772 | Msa0342660:CDS | 25.0% |
| !! | TTTAAGAATGATGCTTTGTT+AGG | + | chr3_1:573818-573837 | Msa0342660:CDS | 25.0% |
| ! | TTATAGGAAATTCTCTAAAC+CGG | + | chr3_1:573862-573881 | Msa0342660:CDS | 25.0% |
| ! | AAATAGAGTTAAAGATCCAA+AGG | + | chr3_1:573328-573347 | Msa0342660:CDS | 25.0% |
| ! | AATAGAGTTAAAGATCCAAA+GGG | + | chr3_1:573329-573348 | Msa0342660:CDS | 25.0% |
| ! | AGATTCTGTATCAAAAGAAA+TGG | + | chr3_1:573382-573401 | Msa0342660:CDS | 25.0% |
| !!! | TTGGTTTTGTATGATCAAAT+CGG | + | chr3_1:573568-573587 | Msa0342660:CDS | 25.0% |
| ! | ATGAGTTAGTTGGAAAAAAT+GGG | + | chr3_1:573753-573772 | Msa0342660:CDS | 25.0% |
| !! | TTTAAGAATGATGCTTTGTT+AGG | + | chr3_1:573818-573837 | Msa0342660:CDS | 25.0% |
| ! | TTATAGGAAATTCTCTAAAC+CGG | + | chr3_1:573862-573881 | Msa0342660:CDS | 25.0% |
| AGAAGAAGATACGATGAATT+GGG | - | chr3_1:572800-572819 | None:intergenic | 30.0% | |
| TAGAAGAAGATACGATGAAT+TGG | - | chr3_1:572801-572820 | None:intergenic | 30.0% | |
| ATGTTATCTTGTTCTATACG+AGG | - | chr3_1:573092-573111 | None:intergenic | 30.0% | |
| TGACTTGAATAGCCATTATA+GGG | - | chr3_1:573124-573143 | None:intergenic | 30.0% | |
| !! | TTTTGCTATGGCTTTTGAAA+GGG | - | chr3_1:573243-573262 | None:intergenic | 30.0% |
| !! | TTTTTGCTATGGCTTTTGAA+AGG | - | chr3_1:573244-573263 | None:intergenic | 30.0% |
| ! | ACTCTATTTCTTTCATGTGA+AGG | - | chr3_1:573317-573336 | None:intergenic | 30.0% |
| ! | TATACAAGTTTAAGACCCTT+TGG | - | chr3_1:573347-573366 | None:intergenic | 30.0% |
| ATCAAAAGAAATGGAATCTG+CGG | + | chr3_1:573391-573410 | Msa0342660:CDS | 30.0% | |
| TTGTAACAAGTTCCTTGATT+TGG | + | chr3_1:573549-573568 | Msa0342660:CDS | 30.0% | |
| GATCATACAAAACCAAATCA+AGG | - | chr3_1:573564-573583 | None:intergenic | 30.0% | |
| GATGAGTTAGTTGGAAAAAA+TGG | + | chr3_1:573752-573771 | Msa0342660:CDS | 30.0% | |
| AATCGTTGATGCCTAATTAT+AGG | + | chr3_1:573846-573865 | Msa0342660:CDS | 30.0% | |
| TATAGGAAATTCTCTAAACC+GGG | + | chr3_1:573863-573882 | Msa0342660:CDS | 30.0% | |
| !! | CTGTTTATGAGACTGATTTT+GGG | + | chr3_1:573924-573943 | Msa0342660:CDS | 30.0% |
| ATCAGAAAGAGAAATCGAAA+CGG | - | chr3_1:573993-574012 | None:intergenic | 30.0% | |
| AGAAGAAGATACGATGAATT+GGG | - | chr3_1:572800-572819 | None:intergenic | 30.0% | |
| TAGAAGAAGATACGATGAAT+TGG | - | chr3_1:572801-572820 | None:intergenic | 30.0% | |
| ATGTTATCTTGTTCTATACG+AGG | - | chr3_1:573092-573111 | None:intergenic | 30.0% | |
| TGACTTGAATAGCCATTATA+GGG | - | chr3_1:573124-573143 | None:intergenic | 30.0% | |
| !! | TTTTGCTATGGCTTTTGAAA+GGG | - | chr3_1:573243-573262 | None:intergenic | 30.0% |
| !! | TTTTTGCTATGGCTTTTGAA+AGG | - | chr3_1:573244-573263 | None:intergenic | 30.0% |
| ! | ACTCTATTTCTTTCATGTGA+AGG | - | chr3_1:573317-573336 | None:intergenic | 30.0% |
| ! | TATACAAGTTTAAGACCCTT+TGG | - | chr3_1:573347-573366 | None:intergenic | 30.0% |
| ATCAAAAGAAATGGAATCTG+CGG | + | chr3_1:573391-573410 | Msa0342660:CDS | 30.0% | |
| TTGTAACAAGTTCCTTGATT+TGG | + | chr3_1:573549-573568 | Msa0342660:CDS | 30.0% | |
| GATCATACAAAACCAAATCA+AGG | - | chr3_1:573564-573583 | None:intergenic | 30.0% | |
| GATGAGTTAGTTGGAAAAAA+TGG | + | chr3_1:573752-573771 | Msa0342660:CDS | 30.0% | |
| AATCGTTGATGCCTAATTAT+AGG | + | chr3_1:573846-573865 | Msa0342660:CDS | 30.0% | |
| TATAGGAAATTCTCTAAACC+GGG | + | chr3_1:573863-573882 | Msa0342660:CDS | 30.0% | |
| !! | CTGTTTATGAGACTGATTTT+GGG | + | chr3_1:573924-573943 | Msa0342660:CDS | 30.0% |
| ATCAGAAAGAGAAATCGAAA+CGG | - | chr3_1:573993-574012 | None:intergenic | 30.0% | |
| TATCACCTTCATGCTGAATT+TGG | - | chr3_1:572685-572704 | None:intergenic | 35.0% | |
| !! | GTTGGTGATGGAACTAAATT+TGG | - | chr3_1:572732-572751 | None:intergenic | 35.0% |
| GTATGTCGAAGAAAGTTAAG+GGG | - | chr3_1:572761-572780 | None:intergenic | 35.0% | |
| GGTATGTCGAAGAAAGTTAA+GGG | - | chr3_1:572762-572781 | None:intergenic | 35.0% | |
| TGGTATGTCGAAGAAAGTTA+AGG | - | chr3_1:572763-572782 | None:intergenic | 35.0% | |
| TAACTTTCTTCGACATACCA+TGG | + | chr3_1:572763-572782 | Msa0342660:CDS | 35.0% | |
| ATTGGGTCACAATAAAACCA+TGG | - | chr3_1:572783-572802 | None:intergenic | 35.0% | |
| GAAAGTGAGTGTTTGAGAAT+GGG | - | chr3_1:572867-572886 | None:intergenic | 35.0% | |
| !! | TATGTAAGGAGGAGTGTTAT+GGG | - | chr3_1:572946-572965 | None:intergenic | 35.0% |
| TCATCAAGGTAACGTATGTA+AGG | - | chr3_1:572960-572979 | None:intergenic | 35.0% | |
| ATTCACAAGATGCTCAAAAC+TGG | + | chr3_1:573039-573058 | Msa0342660:CDS | 35.0% | |
| TTATCTTGTTCTATACGAGG+TGG | - | chr3_1:573089-573108 | None:intergenic | 35.0% | |
| CATTCGTGTAATCCCTATAA+TGG | + | chr3_1:573109-573128 | Msa0342660:CDS | 35.0% | |
| GTGACTTGAATAGCCATTAT+AGG | - | chr3_1:573125-573144 | None:intergenic | 35.0% | |
| TCAAAAGAAATGGAATCTGC+GGG | + | chr3_1:573392-573411 | Msa0342660:CDS | 35.0% | |
| TCGAGATTCTTATGTTAGCA+AGG | + | chr3_1:573421-573440 | Msa0342660:CDS | 35.0% | |
| AAGTCCAGAAGTTGAAGAAA+TGG | + | chr3_1:573474-573493 | Msa0342660:CDS | 35.0% | |
| AGTCCAGAAGTTGAAGAAAT+GGG | + | chr3_1:573475-573494 | Msa0342660:CDS | 35.0% | |
| TAACCCATTTCTTCAACTTC+TGG | - | chr3_1:573481-573500 | None:intergenic | 35.0% | |
| ! | GTTTTGTATGATCAAATCGG+AGG | + | chr3_1:573571-573590 | Msa0342660:CDS | 35.0% |
| TTGTATTGCATCTAATGCTG+TGG | + | chr3_1:573718-573737 | Msa0342660:CDS | 35.0% | |
| GTAAAGAGAGATGAGTTAGT+TGG | + | chr3_1:573743-573762 | Msa0342660:CDS | 35.0% | |
| TGGAAAAAATGGGATTGTTG+TGG | + | chr3_1:573763-573782 | Msa0342660:CDS | 35.0% | |
| ! | GTCTCATAAACAGCCAATTT+TGG | - | chr3_1:573917-573936 | None:intergenic | 35.0% |
| !! | GCTGTTTATGAGACTGATTT+TGG | + | chr3_1:573923-573942 | Msa0342660:CDS | 35.0% |
| !! | TTTATGAGACTGATTTTGGG+TGG | + | chr3_1:573927-573946 | Msa0342660:CDS | 35.0% |
| !! | TTATGAGACTGATTTTGGGT+GGG | + | chr3_1:573928-573947 | Msa0342660:CDS | 35.0% |
| TGAACTGCATCAGATTTCTT+AGG | - | chr3_1:573959-573978 | None:intergenic | 35.0% | |
| AAATCGAAACGGACAAATCA+AGG | - | chr3_1:573982-574001 | None:intergenic | 35.0% | |
| TATCACCTTCATGCTGAATT+TGG | - | chr3_1:572685-572704 | None:intergenic | 35.0% | |
| !! | GTTGGTGATGGAACTAAATT+TGG | - | chr3_1:572732-572751 | None:intergenic | 35.0% |
| GTATGTCGAAGAAAGTTAAG+GGG | - | chr3_1:572761-572780 | None:intergenic | 35.0% | |
| GGTATGTCGAAGAAAGTTAA+GGG | - | chr3_1:572762-572781 | None:intergenic | 35.0% | |
| TGGTATGTCGAAGAAAGTTA+AGG | - | chr3_1:572763-572782 | None:intergenic | 35.0% | |
| TAACTTTCTTCGACATACCA+TGG | + | chr3_1:572763-572782 | Msa0342660:CDS | 35.0% | |
| ATTGGGTCACAATAAAACCA+TGG | - | chr3_1:572783-572802 | None:intergenic | 35.0% | |
| GAAAGTGAGTGTTTGAGAAT+GGG | - | chr3_1:572867-572886 | None:intergenic | 35.0% | |
| !! | TATGTAAGGAGGAGTGTTAT+GGG | - | chr3_1:572946-572965 | None:intergenic | 35.0% |
| TCATCAAGGTAACGTATGTA+AGG | - | chr3_1:572960-572979 | None:intergenic | 35.0% | |
| ATTCACAAGATGCTCAAAAC+TGG | + | chr3_1:573039-573058 | Msa0342660:CDS | 35.0% | |
| TTATCTTGTTCTATACGAGG+TGG | - | chr3_1:573089-573108 | None:intergenic | 35.0% | |
| CATTCGTGTAATCCCTATAA+TGG | + | chr3_1:573109-573128 | Msa0342660:CDS | 35.0% | |
| GTGACTTGAATAGCCATTAT+AGG | - | chr3_1:573125-573144 | None:intergenic | 35.0% | |
| TCAAAAGAAATGGAATCTGC+GGG | + | chr3_1:573392-573411 | Msa0342660:CDS | 35.0% | |
| TCGAGATTCTTATGTTAGCA+AGG | + | chr3_1:573421-573440 | Msa0342660:CDS | 35.0% | |
| AAGTCCAGAAGTTGAAGAAA+TGG | + | chr3_1:573474-573493 | Msa0342660:CDS | 35.0% | |
| AGTCCAGAAGTTGAAGAAAT+GGG | + | chr3_1:573475-573494 | Msa0342660:CDS | 35.0% | |
| TAACCCATTTCTTCAACTTC+TGG | - | chr3_1:573481-573500 | None:intergenic | 35.0% | |
| ! | GTTTTGTATGATCAAATCGG+AGG | + | chr3_1:573571-573590 | Msa0342660:CDS | 35.0% |
| TTGTATTGCATCTAATGCTG+TGG | + | chr3_1:573718-573737 | Msa0342660:CDS | 35.0% | |
| GTAAAGAGAGATGAGTTAGT+TGG | + | chr3_1:573743-573762 | Msa0342660:CDS | 35.0% | |
| TGGAAAAAATGGGATTGTTG+TGG | + | chr3_1:573763-573782 | Msa0342660:CDS | 35.0% | |
| ! | GTCTCATAAACAGCCAATTT+TGG | - | chr3_1:573917-573936 | None:intergenic | 35.0% |
| !! | GCTGTTTATGAGACTGATTT+TGG | + | chr3_1:573923-573942 | Msa0342660:CDS | 35.0% |
| !! | TTTATGAGACTGATTTTGGG+TGG | + | chr3_1:573927-573946 | Msa0342660:CDS | 35.0% |
| !! | TTATGAGACTGATTTTGGGT+GGG | + | chr3_1:573928-573947 | Msa0342660:CDS | 35.0% |
| TGAACTGCATCAGATTTCTT+AGG | - | chr3_1:573959-573978 | None:intergenic | 35.0% | |
| AAATCGAAACGGACAAATCA+AGG | - | chr3_1:573982-574001 | None:intergenic | 35.0% | |
| ! | GATGGAACTAAATTTGGTGG+TGG | - | chr3_1:572726-572745 | None:intergenic | 40.0% |
| !! | GGTGATGGAACTAAATTTGG+TGG | - | chr3_1:572729-572748 | None:intergenic | 40.0% |
| AAAGTTAAGGGGAGAATGGT+TGG | - | chr3_1:572750-572769 | None:intergenic | 40.0% | |
| GAAGAAAGTTAAGGGGAGAA+TGG | - | chr3_1:572754-572773 | None:intergenic | 40.0% | |
| GTTTGTAGGAAGTGATGAGT+TGG | - | chr3_1:572837-572856 | None:intergenic | 40.0% | |
| !! | GAATGGGAAGTGTTGTTTGT+AGG | - | chr3_1:572851-572870 | None:intergenic | 40.0% |
| GGAAAGTGAGTGTTTGAGAA+TGG | - | chr3_1:572868-572887 | None:intergenic | 40.0% | |
| !! | AAAGAAGTGTTGGAGGGTTA+AGG | - | chr3_1:572889-572908 | None:intergenic | 40.0% |
| GAGTGTTATGGGAATTTGGA+GGG | - | chr3_1:572935-572954 | None:intergenic | 40.0% | |
| !! | GTATGTAAGGAGGAGTGTTA+TGG | - | chr3_1:572947-572966 | None:intergenic | 40.0% |
| TCAAGGTAACGTATGTAAGG+AGG | - | chr3_1:572957-572976 | None:intergenic | 40.0% | |
| AGGAGATAGAGTCTTCATCA+AGG | - | chr3_1:572974-572993 | None:intergenic | 40.0% | |
| ! | GGAGGTAAATTTGGAACAAG+AGG | - | chr3_1:573068-573087 | None:intergenic | 40.0% |
| ATACGAGGTGGAGGTAAATT+TGG | - | chr3_1:573077-573096 | None:intergenic | 40.0% | |
| CAGCAATATGGTTGTAACTG+AGG | - | chr3_1:573178-573197 | None:intergenic | 40.0% | |
| TACAACCATATTGCTGCAGA+CGG | + | chr3_1:573182-573201 | Msa0342660:CDS | 40.0% | |
| TCATGTGAAGGAAGATCAAG+AGG | - | chr3_1:573305-573324 | None:intergenic | 40.0% | |
| TTGTATGATCAAATCGGAGG+AGG | + | chr3_1:573574-573593 | Msa0342660:CDS | 40.0% | |
| TGTATGATCAAATCGGAGGA+GGG | + | chr3_1:573575-573594 | Msa0342660:CDS | 40.0% | |
| GGTGATAGCAAAAGTGATCA+AGG | + | chr3_1:573596-573615 | Msa0342660:CDS | 40.0% | |
| AGCAAAAGTGATCAAGGTGA+AGG | + | chr3_1:573602-573621 | Msa0342660:CDS | 40.0% | |
| !! | TATGAGACTGATTTTGGGTG+GGG | + | chr3_1:573929-573948 | Msa0342660:CDS | 40.0% |
| TCTCTTTCTGATTGCAGAGA+TGG | + | chr3_1:574001-574020 | Msa0342660:CDS | 40.0% | |
| ! | AGGTGGAATTGAGATTGGTT+TGG | + | chr3_1:574027-574046 | Msa0342660:CDS | 40.0% |
| ! | GATGGAACTAAATTTGGTGG+TGG | - | chr3_1:572726-572745 | None:intergenic | 40.0% |
| !! | GGTGATGGAACTAAATTTGG+TGG | - | chr3_1:572729-572748 | None:intergenic | 40.0% |
| AAAGTTAAGGGGAGAATGGT+TGG | - | chr3_1:572750-572769 | None:intergenic | 40.0% | |
| GAAGAAAGTTAAGGGGAGAA+TGG | - | chr3_1:572754-572773 | None:intergenic | 40.0% | |
| GTTTGTAGGAAGTGATGAGT+TGG | - | chr3_1:572837-572856 | None:intergenic | 40.0% | |
| !! | GAATGGGAAGTGTTGTTTGT+AGG | - | chr3_1:572851-572870 | None:intergenic | 40.0% |
| GGAAAGTGAGTGTTTGAGAA+TGG | - | chr3_1:572868-572887 | None:intergenic | 40.0% | |
| !! | AAAGAAGTGTTGGAGGGTTA+AGG | - | chr3_1:572889-572908 | None:intergenic | 40.0% |
| GAGTGTTATGGGAATTTGGA+GGG | - | chr3_1:572935-572954 | None:intergenic | 40.0% | |
| !! | GTATGTAAGGAGGAGTGTTA+TGG | - | chr3_1:572947-572966 | None:intergenic | 40.0% |
| TCAAGGTAACGTATGTAAGG+AGG | - | chr3_1:572957-572976 | None:intergenic | 40.0% | |
| AGGAGATAGAGTCTTCATCA+AGG | - | chr3_1:572974-572993 | None:intergenic | 40.0% | |
| ! | GGAGGTAAATTTGGAACAAG+AGG | - | chr3_1:573068-573087 | None:intergenic | 40.0% |
| ATACGAGGTGGAGGTAAATT+TGG | - | chr3_1:573077-573096 | None:intergenic | 40.0% | |
| CAGCAATATGGTTGTAACTG+AGG | - | chr3_1:573178-573197 | None:intergenic | 40.0% | |
| TACAACCATATTGCTGCAGA+CGG | + | chr3_1:573182-573201 | Msa0342660:CDS | 40.0% | |
| TCATGTGAAGGAAGATCAAG+AGG | - | chr3_1:573305-573324 | None:intergenic | 40.0% | |
| TTGTATGATCAAATCGGAGG+AGG | + | chr3_1:573574-573593 | Msa0342660:CDS | 40.0% | |
| TGTATGATCAAATCGGAGGA+GGG | + | chr3_1:573575-573594 | Msa0342660:CDS | 40.0% | |
| GGTGATAGCAAAAGTGATCA+AGG | + | chr3_1:573596-573615 | Msa0342660:CDS | 40.0% | |
| AGCAAAAGTGATCAAGGTGA+AGG | + | chr3_1:573602-573621 | Msa0342660:CDS | 40.0% | |
| !! | TATGAGACTGATTTTGGGTG+GGG | + | chr3_1:573929-573948 | Msa0342660:CDS | 40.0% |
| TCTCTTTCTGATTGCAGAGA+TGG | + | chr3_1:574001-574020 | Msa0342660:CDS | 40.0% | |
| ! | AGGTGGAATTGAGATTGGTT+TGG | + | chr3_1:574027-574046 | Msa0342660:CDS | 40.0% |
| CGAGACCAAATTCAGCATGA+AGG | + | chr3_1:572677-572696 | Msa0342660:CDS | 45.0% | |
| ! | GATGAGTTGGATGAGGAAAG+TGG | - | chr3_1:572824-572843 | None:intergenic | 45.0% |
| ! | AGGAAGTGATGAGTTGGATG+AGG | - | chr3_1:572831-572850 | None:intergenic | 45.0% |
| !! | GAAGGGAAAGAAGTGTTGGA+GGG | - | chr3_1:572895-572914 | None:intergenic | 45.0% |
| !! | TGAAGGGAAAGAAGTGTTGG+AGG | - | chr3_1:572896-572915 | None:intergenic | 45.0% |
| ! | AGGTGAAGGGAAAGAAGTGT+TGG | - | chr3_1:572899-572918 | None:intergenic | 45.0% |
| ATGATGAGGTTGGAGGTGAA+GGG | - | chr3_1:572912-572931 | None:intergenic | 45.0% | |
| ATTTGGAGGGATGATGAGGT+TGG | - | chr3_1:572922-572941 | None:intergenic | 45.0% | |
| ! | GGAGTGTTATGGGAATTTGG+AGG | - | chr3_1:572936-572955 | None:intergenic | 45.0% |
| !! | GGAGGAGTGTTATGGGAATT+TGG | - | chr3_1:572939-572958 | None:intergenic | 45.0% |
| GAGAATGTTGAAGTCTGCTG+AGG | - | chr3_1:573012-573031 | None:intergenic | 45.0% | |
| TCTTGTTCTATACGAGGTGG+AGG | - | chr3_1:573086-573105 | None:intergenic | 45.0% | |
| CACATAGAGAAACCGGAGTT+CGG | - | chr3_1:573155-573174 | None:intergenic | 45.0% | |
| ACTGAGGCACATAGAGAAAC+CGG | - | chr3_1:573162-573181 | None:intergenic | 45.0% | |
| ACAACCATATTGCTGCAGAC+GGG | + | chr3_1:573183-573202 | Msa0342660:CDS | 45.0% | |
| ATTTCCCGTCTGCAGCAATA+TGG | - | chr3_1:573190-573209 | None:intergenic | 45.0% | |
| !! | TGCTATGGCTTTTGAAAGGG+AGG | - | chr3_1:573240-573259 | None:intergenic | 45.0% |
| TGTGAAGGAAGATCAAGAGG+CGG | - | chr3_1:573302-573321 | None:intergenic | 45.0% | |
| AGAAATGGAATCTGCGGGTT+TGG | + | chr3_1:573397-573416 | Msa0342660:CDS | 45.0% | |
| GGGATTGTTGTGGCTTCAAA+TGG | + | chr3_1:573773-573792 | Msa0342660:CDS | 45.0% | |
| !! | GGTTGCTGGTTCACCAAAAT+TGG | + | chr3_1:573901-573920 | Msa0342660:CDS | 45.0% |
| !! | ATGAGACTGATTTTGGGTGG+GGG | + | chr3_1:573930-573949 | Msa0342660:CDS | 45.0% |
| CTTTCTGATTGCAGAGATGG+TGG | + | chr3_1:574004-574023 | Msa0342660:CDS | 45.0% | |
| !! | AGATTGGTTTGGCTCTTGAG+AGG | + | chr3_1:574038-574057 | Msa0342660:CDS | 45.0% |
| CGAGACCAAATTCAGCATGA+AGG | + | chr3_1:572677-572696 | Msa0342660:CDS | 45.0% | |
| ! | GATGAGTTGGATGAGGAAAG+TGG | - | chr3_1:572824-572843 | None:intergenic | 45.0% |
| ! | AGGAAGTGATGAGTTGGATG+AGG | - | chr3_1:572831-572850 | None:intergenic | 45.0% |
| !! | GAAGGGAAAGAAGTGTTGGA+GGG | - | chr3_1:572895-572914 | None:intergenic | 45.0% |
| !! | TGAAGGGAAAGAAGTGTTGG+AGG | - | chr3_1:572896-572915 | None:intergenic | 45.0% |
| ! | AGGTGAAGGGAAAGAAGTGT+TGG | - | chr3_1:572899-572918 | None:intergenic | 45.0% |
| ATGATGAGGTTGGAGGTGAA+GGG | - | chr3_1:572912-572931 | None:intergenic | 45.0% | |
| ATTTGGAGGGATGATGAGGT+TGG | - | chr3_1:572922-572941 | None:intergenic | 45.0% | |
| ! | GGAGTGTTATGGGAATTTGG+AGG | - | chr3_1:572936-572955 | None:intergenic | 45.0% |
| !! | GGAGGAGTGTTATGGGAATT+TGG | - | chr3_1:572939-572958 | None:intergenic | 45.0% |
| GAGAATGTTGAAGTCTGCTG+AGG | - | chr3_1:573012-573031 | None:intergenic | 45.0% | |
| TCTTGTTCTATACGAGGTGG+AGG | - | chr3_1:573086-573105 | None:intergenic | 45.0% | |
| CACATAGAGAAACCGGAGTT+CGG | - | chr3_1:573155-573174 | None:intergenic | 45.0% | |
| ACTGAGGCACATAGAGAAAC+CGG | - | chr3_1:573162-573181 | None:intergenic | 45.0% | |
| ACAACCATATTGCTGCAGAC+GGG | + | chr3_1:573183-573202 | Msa0342660:CDS | 45.0% | |
| ATTTCCCGTCTGCAGCAATA+TGG | - | chr3_1:573190-573209 | None:intergenic | 45.0% | |
| !! | TGCTATGGCTTTTGAAAGGG+AGG | - | chr3_1:573240-573259 | None:intergenic | 45.0% |
| TGTGAAGGAAGATCAAGAGG+CGG | - | chr3_1:573302-573321 | None:intergenic | 45.0% | |
| AGAAATGGAATCTGCGGGTT+TGG | + | chr3_1:573397-573416 | Msa0342660:CDS | 45.0% | |
| GGGATTGTTGTGGCTTCAAA+TGG | + | chr3_1:573773-573792 | Msa0342660:CDS | 45.0% | |
| !! | GGTTGCTGGTTCACCAAAAT+TGG | + | chr3_1:573901-573920 | Msa0342660:CDS | 45.0% |
| !! | ATGAGACTGATTTTGGGTGG+GGG | + | chr3_1:573930-573949 | Msa0342660:CDS | 45.0% |
| CTTTCTGATTGCAGAGATGG+TGG | + | chr3_1:574004-574023 | Msa0342660:CDS | 45.0% | |
| !! | AGATTGGTTTGGCTCTTGAG+AGG | + | chr3_1:574038-574057 | Msa0342660:CDS | 45.0% |
| !! | AAGGGGAGAATGGTTGGTGA+TGG | - | chr3_1:572744-572763 | None:intergenic | 50.0% |
| GATGATGAGGTTGGAGGTGA+AGG | - | chr3_1:572913-572932 | None:intergenic | 50.0% | |
| GGGAATTTGGAGGGATGATG+AGG | - | chr3_1:572926-572945 | None:intergenic | 50.0% | |
| GTCACTGTTCTTCCGAACTC+CGG | + | chr3_1:573140-573159 | Msa0342660:CDS | 50.0% | |
| ! | GCAGATTGTCGTGATAGCGT+TGG | + | chr3_1:573665-573684 | Msa0342660:CDS | 50.0% |
| ACCACTACAAGAGACGTACC+CGG | - | chr3_1:573884-573903 | None:intergenic | 50.0% | |
| ACGTCTCTTGTAGTGGTTGC+TGG | + | chr3_1:573887-573906 | Msa0342660:CDS | 50.0% | |
| ! | TCTGATTGCAGAGATGGTGG+AGG | + | chr3_1:574007-574026 | Msa0342660:CDS | 50.0% |
| GGTGGAGGTGGAATTGAGAT+TGG | + | chr3_1:574022-574041 | Msa0342660:CDS | 50.0% | |
| !! | AAGGGGAGAATGGTTGGTGA+TGG | - | chr3_1:572744-572763 | None:intergenic | 50.0% |
| GATGATGAGGTTGGAGGTGA+AGG | - | chr3_1:572913-572932 | None:intergenic | 50.0% | |
| GGGAATTTGGAGGGATGATG+AGG | - | chr3_1:572926-572945 | None:intergenic | 50.0% | |
| GTCACTGTTCTTCCGAACTC+CGG | + | chr3_1:573140-573159 | Msa0342660:CDS | 50.0% | |
| ! | GCAGATTGTCGTGATAGCGT+TGG | + | chr3_1:573665-573684 | Msa0342660:CDS | 50.0% |
| ACCACTACAAGAGACGTACC+CGG | - | chr3_1:573884-573903 | None:intergenic | 50.0% | |
| ACGTCTCTTGTAGTGGTTGC+TGG | + | chr3_1:573887-573906 | Msa0342660:CDS | 50.0% | |
| ! | TCTGATTGCAGAGATGGTGG+AGG | + | chr3_1:574007-574026 | Msa0342660:CDS | 50.0% |
| GGTGGAGGTGGAATTGAGAT+TGG | + | chr3_1:574022-574041 | Msa0342660:CDS | 50.0% | |
| TGGAGGGATGATGAGGTTGG+AGG | - | chr3_1:572919-572938 | None:intergenic | 55.0% | |
| TGAGGATTCAGCGACGGTGA+AGG | - | chr3_1:572994-573013 | None:intergenic | 55.0% | |
| GTCTGCTGAGGATTCAGCGA+CGG | - | chr3_1:573000-573019 | None:intergenic | 55.0% | |
| ACCGGGTACGTCTCTTGTAG+TGG | + | chr3_1:573880-573899 | Msa0342660:CDS | 55.0% | |
| !! | GATTGCAGAGATGGTGGAGG+TGG | + | chr3_1:574010-574029 | Msa0342660:CDS | 55.0% |
| TGGAGGGATGATGAGGTTGG+AGG | - | chr3_1:572919-572938 | None:intergenic | 55.0% | |
| TGAGGATTCAGCGACGGTGA+AGG | - | chr3_1:572994-573013 | None:intergenic | 55.0% | |
| GTCTGCTGAGGATTCAGCGA+CGG | - | chr3_1:573000-573019 | None:intergenic | 55.0% | |
| ACCGGGTACGTCTCTTGTAG+TGG | + | chr3_1:573880-573899 | Msa0342660:CDS | 55.0% | |
| !! | GATTGCAGAGATGGTGGAGG+TGG | + | chr3_1:574010-574029 | Msa0342660:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_1 | gene | 572642 | 574132 | 572642 | ID=Msa0342660;Name=Msa0342660 |
| chr3_1 | mRNA | 572642 | 574132 | 572642 | ID=Msa0342660-mRNA-1;Parent=Msa0342660;Name=Msa0342660-mRNA-1;_AED=0.03;_eAED=0.03;_QI=0|-1|0|1|-1|1|1|0|496 |
| chr3_1 | exon | 572642 | 574132 | 572642 | ID=Msa0342660-mRNA-1:exon:48;Parent=Msa0342660-mRNA-1 |
| chr3_1 | CDS | 572642 | 574132 | 572642 | ID=Msa0342660-mRNA-1:cds;Parent=Msa0342660-mRNA-1 |
| Gene Sequence |
| Protein sequence |
