Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0014790 | Msa1092660 | 0.820575 | 6.381377e-53 | -8.615850e-47 |
| Msa0055650 | Msa1092660 | 0.808092 | 3.670296e-50 | -8.615850e-47 |
| Msa0056550 | Msa1092660 | 0.827222 | 1.762494e-54 | -8.615850e-47 |
| Msa0067580 | Msa1092660 | 0.808553 | 2.926651e-50 | -8.615850e-47 |
| Msa0070090 | Msa1092660 | 0.807851 | 4.131199e-50 | -8.615850e-47 |
| Msa0605230 | Msa1092660 | 0.810533 | 1.099734e-50 | -8.615850e-47 |
| Msa0641020 | Msa1092660 | 0.805502 | 1.294180e-49 | -8.615850e-47 |
| Msa0678240 | Msa1092660 | 0.818777 | 1.641940e-52 | -8.615850e-47 |
| Msa0752580 | Msa1092660 | 0.817032 | 4.069496e-52 | -8.615850e-47 |
| Msa0754500 | Msa1092660 | 0.809595 | 1.751208e-50 | -8.615850e-47 |
| Msa0756480 | Msa1092660 | 0.804435 | 2.163348e-49 | -8.615850e-47 |
| Msa0778580 | Msa1092660 | 0.812955 | 3.266713e-51 | -8.615850e-47 |
| Msa0830900 | Msa1092660 | 0.813822 | 2.107364e-51 | -8.615850e-47 |
| Msa0835510 | Msa1092660 | 0.801951 | 7.066033e-49 | -8.615850e-47 |
| Msa0162070 | Msa1092660 | 0.806338 | 8.633414e-50 | -8.615850e-47 |
| Msa0371610 | Msa1092660 | 0.801616 | 8.277421e-49 | -8.615850e-47 |
| Msa0389030 | Msa1092660 | 0.829254 | 5.704405e-55 | -8.615850e-47 |
| Msa0409820 | Msa1092660 | 0.806917 | 6.515191e-50 | -8.615850e-47 |
| Msa0440110 | Msa1092660 | 0.802995 | 4.305894e-49 | -8.615850e-47 |
| Msa0452010 | Msa1092660 | 0.823083 | 1.676215e-53 | -8.615850e-47 |
| Msa0984830 | Msa1092660 | 0.803913 | 2.778670e-49 | -8.615850e-47 |
| Msa1033670 | Msa1092660 | 0.808154 | 3.559637e-50 | -8.615850e-47 |
| Msa1056530 | Msa1092660 | 0.968433 | 1.139510e-128 | -8.615850e-47 |
| Msa1073500 | Msa1092660 | 0.813473 | 2.515142e-51 | -8.615850e-47 |
| Msa1092660 | Msa1182780 | 0.805913 | 1.061251e-49 | -8.615850e-47 |
| Msa1092660 | Msa1191390 | 0.825008 | 5.924422e-54 | -8.615850e-47 |
| Msa1092660 | Msa1231520 | 0.811989 | 5.313445e-51 | -8.615850e-47 |
| Msa1092660 | Msa1272130 | 0.801615 | 8.283829e-49 | -8.615850e-47 |
| Msa1092660 | Msa1279860 | 0.819732 | 9.952526e-53 | -8.615850e-47 |
| Msa1092660 | Msa1287160 | 0.815335 | 9.747332e-52 | -8.615850e-47 |
| Msa1092660 | Msa1287340 | 0.806546 | 7.803672e-50 | -8.615850e-47 |
| Msa1092660 | Msa1289500 | 0.817779 | 2.763241e-52 | -8.615850e-47 |
| Msa1092660 | Msa1343340 | 0.822622 | 2.146451e-53 | -8.615850e-47 |
| Msa1092660 | Msa1445250 | 0.801607 | 8.312817e-49 | -8.615850e-47 |
| Msa1092660 | Msa1457070 | 0.806406 | 8.352935e-50 | -8.615850e-47 |
| Msa0281780 | Msa1092660 | 0.808923 | 2.440153e-50 | -8.615850e-47 |
| Msa0323630 | Msa1092660 | 0.801988 | 6.944568e-49 | -8.615850e-47 |
| Msa0592470 | Msa1092660 | 0.801474 | 8.851185e-49 | -8.615850e-47 |
| Msa0883390 | Msa1092660 | 0.803874 | 2.830065e-49 | -8.615850e-47 |
| Msa0883430 | Msa1092660 | 0.803337 | 3.658538e-49 | -8.615850e-47 |
| Msa0883450 | Msa1092660 | 0.803270 | 3.776016e-49 | -8.615850e-47 |
| Msa0885200 | Msa1092660 | 0.828218 | 1.016044e-54 | -8.615850e-47 |
| Msa0885220 | Msa1092660 | 0.817088 | 3.952584e-52 | -8.615850e-47 |
| Msa0951720 | Msa1092660 | 0.806627 | 7.505515e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 15 sgRNAs with CRISPR-Local
Find 247 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CATTACGGGACATCTTGATT+TGG | 0.363637 | 7_3:+9863177 | Msa1092660:CDS |
| CATTGGCCTGCTCAAATTGC+TGG | 0.379850 | 7_3:+9862537 | Msa1092660:CDS |
| AAATTTAAGCAAGCGATTGC+TGG | 0.422061 | 7_3:+9862414 | Msa1092660:five_prime_UTR |
| TCGTTACATATATTGTCATC+AGG | 0.428039 | 7_3:+9863231 | Msa1092660:CDS |
| ATCTCTTTGCGATACTCTTG+TGG | 0.477953 | 7_3:-9863205 | None:intergenic |
| TGCAAACTAGTGATGGTCAT+TGG | 0.495361 | 7_3:+9862520 | Msa1092660:exon |
| TCTCTTTGCGATACTCTTGT+GGG | 0.513688 | 7_3:-9863204 | None:intergenic |
| CACTAGTTTGCAATGCTGCT+AGG | 0.560576 | 7_3:-9862509 | None:intergenic |
| AGCTACAACGACATTGAGAA+GGG | 0.563777 | 7_3:+9862476 | Msa1092660:five_prime_UTR |
| ATAGGACCAGCAATTTGAGC+AGG | 0.576160 | 7_3:-9862543 | None:intergenic |
| GCTGGTGTGAAGATAGAAGA+TGG | 0.578026 | 7_3:+9862432 | Msa1092660:five_prime_UTR |
| GCAGCATTGCAAACTAGTGA+TGG | 0.596816 | 7_3:+9862513 | Msa1092660:exon |
| AAGCTACAACGACATTGAGA+AGG | 0.604574 | 7_3:+9862475 | Msa1092660:five_prime_UTR |
| AGATAAGTATTCACCAAAGG+AGG | 0.608286 | 7_3:-9862576 | None:intergenic |
| GCTACAACGACATTGAGAAG+GGG | 0.704931 | 7_3:+9862477 | Msa1092660:five_prime_UTR |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTTTTTTTCTTTTTCAT+GGG | - | chr7_3:9862632-9862651 | None:intergenic | 10.0% |
| !!! | ATGTATTTTTTATATCATAA+TGG | + | chr7_3:9862866-9862885 | Msa1092660:intron | 10.0% |
| !! | AACTATATATATGTTAATAA+TGG | - | chr7_3:9864444-9864463 | None:intergenic | 10.0% |
| !!! | TCTAATAATTTTTATTTTAG+GGG | - | chr7_3:9865210-9865229 | None:intergenic | 10.0% |
| !!! | CTTTTTTTTTTTCTTTTTCA+TGG | - | chr7_3:9862633-9862652 | None:intergenic | 15.0% |
| !!! | AAACAATAAAGAGTATTAAA+GGG | + | chr7_3:9862660-9862679 | Msa1092660:intron | 15.0% |
| !!! | TTAGTATTTTCTTTCTTTAA+CGG | - | chr7_3:9862738-9862757 | None:intergenic | 15.0% |
| !! | AGAAAAATAAATTTACAACT+TGG | + | chr7_3:9863034-9863053 | Msa1092660:intron | 15.0% |
| !! | TATATATTTGCATAACAAAT+GGG | - | chr7_3:9863302-9863321 | None:intergenic | 15.0% |
| !! | ATATATATTTGCATAACAAA+TGG | - | chr7_3:9863303-9863322 | None:intergenic | 15.0% |
| !!! | TTTTCACATTAATTAATTGT+AGG | + | chr7_3:9863910-9863929 | Msa1092660:intron | 15.0% |
| !! | AATCTTATGAAAAAGTTAAT+TGG | + | chr7_3:9864049-9864068 | Msa1092660:intron | 15.0% |
| !! | TTAACATATATATAGTTATC+AGG | + | chr7_3:9864447-9864466 | Msa1092660:intron | 15.0% |
| !!! | GAAACAATAAAGAGTATTAA+AGG | + | chr7_3:9862659-9862678 | Msa1092660:intron | 20.0% |
| !!! | AACAATAAAGAGTATTAAAG+GGG | + | chr7_3:9862661-9862680 | Msa1092660:intron | 20.0% |
| !!! | GGTACAATTTTTTACATTTA+GGG | + | chr7_3:9863586-9863605 | Msa1092660:intron | 20.0% |
| !!! | ATTTTTTACATTTAGGGTTT+AGG | + | chr7_3:9863592-9863611 | Msa1092660:intron | 20.0% |
| !! | ATATAGTAGTAAATAGTTAG+CGG | - | chr7_3:9863691-9863710 | None:intergenic | 20.0% |
| !! | AATTAATTGTAGGTAAAATG+TGG | + | chr7_3:9863920-9863939 | Msa1092660:intron | 20.0% |
| !! | CTTTAAATGATAACATACAT+AGG | + | chr7_3:9864116-9864135 | Msa1092660:intron | 20.0% |
| !! | TTTGATACAATATCTGATTT+GGG | + | chr7_3:9864198-9864217 | Msa1092660:intron | 20.0% |
| !! | AGAAATTTGTAAATAGACAT+AGG | - | chr7_3:9864619-9864638 | None:intergenic | 20.0% |
| !!! | TTACTTTCATGTGTAATTTT+TGG | - | chr7_3:9864941-9864960 | None:intergenic | 20.0% |
| !! | AAGTAAGATCTATATTATGA+TGG | + | chr7_3:9864955-9864974 | Msa1092660:intron | 20.0% |
| !!! | AATAATTTTTATTTTAGGGG+AGG | - | chr7_3:9865207-9865226 | None:intergenic | 20.0% |
| !!! | TCGAAAATAATCTTTTTGAT+TGG | - | chr7_3:9865235-9865254 | None:intergenic | 20.0% |
| !! | GAAATACTTCAAAATTAAAC+AGG | - | chr7_3:9865356-9865375 | None:intergenic | 20.0% |
| !! | GTTTTTAATAAGCTAAGAGT+AGG | + | chr7_3:9862601-9862620 | Msa1092660:intron | 25.0% |
| !!! | TTTTTTCTTTTTCATGGGTT+AGG | - | chr7_3:9862627-9862646 | None:intergenic | 25.0% |
| !!! | AGGTTAATTGTTTTTAGCTA+AGG | + | chr7_3:9862689-9862708 | Msa1092660:intron | 25.0% |
| !!! | GGTTAATTGTTTTTAGCTAA+GGG | + | chr7_3:9862690-9862709 | Msa1092660:intron | 25.0% |
| ! | TATGAAAAAAATACTCTCTC+CGG | + | chr7_3:9862809-9862828 | Msa1092660:intron | 25.0% |
| !!! | GGTTTTTTGTGTTTACATTA+CGG | + | chr7_3:9863162-9863181 | Msa1092660:intron | 25.0% |
| !!! | GTTTTTTGTGTTTACATTAC+GGG | + | chr7_3:9863163-9863182 | Msa1092660:CDS | 25.0% |
| ! | GAACTTTATCTCAAATTTCA+TGG | - | chr7_3:9863345-9863364 | None:intergenic | 25.0% |
| !!! | TTTCTTTTGAAGAATGAAGA+TGG | + | chr7_3:9863377-9863396 | Msa1092660:intron | 25.0% |
| !!! | CGGTACAATTTTTTACATTT+AGG | + | chr7_3:9863585-9863604 | Msa1092660:intron | 25.0% |
| ! | CAGATAAAGAAAACATTTGA+AGG | - | chr7_3:9863716-9863735 | None:intergenic | 25.0% |
| ! | TAAATGATAACATACATAGG+AGG | + | chr7_3:9864119-9864138 | Msa1092660:intron | 25.0% |
| ! | AAATGATAACATACATAGGA+GGG | + | chr7_3:9864120-9864139 | Msa1092660:intron | 25.0% |
| ! | AAAGATCTTCCTGTATAATA+CGG | - | chr7_3:9864165-9864184 | None:intergenic | 25.0% |
| ! | CAAATCAGATATTGTATCAA+AGG | - | chr7_3:9864199-9864218 | None:intergenic | 25.0% |
| ! | CTTTGATACAATATCTGATT+TGG | + | chr7_3:9864197-9864216 | Msa1092660:intron | 25.0% |
| ! | TCTAAAGATCTTGTTGAATA+AGG | + | chr7_3:9865024-9865043 | Msa1092660:intron | 25.0% |
| ! | CTAAAGATCTTGTTGAATAA+GGG | + | chr7_3:9865025-9865044 | Msa1092660:intron | 25.0% |
| ! | TCTTCTTTCTTTATAGCATA+TGG | - | chr7_3:9865101-9865120 | None:intergenic | 25.0% |
| CAAAGATAAGTATTCACCAA+AGG | - | chr7_3:9862582-9862601 | None:intergenic | 30.0% | |
| !!! | TGTTTTTAGCTAAGGGATAA+AGG | + | chr7_3:9862697-9862716 | Msa1092660:intron | 30.0% |
| ACCTTATATATACTTGAGAC+CGG | - | chr7_3:9862831-9862850 | None:intergenic | 30.0% | |
| ! | TGTTACTTGTAATGCAAGTA+AGG | - | chr7_3:9862941-9862960 | None:intergenic | 30.0% |
| ! | AGTAGTGTTTAGTTTAAGAG+AGG | - | chr7_3:9863012-9863031 | None:intergenic | 30.0% |
| ! | ATTCTTCTTCTTTGGTAACT+TGG | + | chr7_3:9863068-9863087 | Msa1092660:intron | 30.0% |
| AGTCAAAAGTAAGTAACAAG+TGG | - | chr7_3:9863110-9863129 | None:intergenic | 30.0% | |
| !! | TTTTGACTATTTGATCAAGC+TGG | + | chr7_3:9863122-9863141 | Msa1092660:intron | 30.0% |
| TCGTTACATATATTGTCATC+AGG | + | chr7_3:9863231-9863250 | Msa1092660:CDS | 30.0% | |
| GTGAATTTGTATGCTGAAAT+TGG | - | chr7_3:9863280-9863299 | None:intergenic | 30.0% | |
| TCAAATTTCATGGCTAATCA+AGG | - | chr7_3:9863335-9863354 | None:intergenic | 30.0% | |
| TTGAGATAAAGTTCTTCATG+TGG | + | chr7_3:9863351-9863370 | Msa1092660:intron | 30.0% | |
| !! | TTTTGAAGAATGAAGATGGA+GGG | + | chr7_3:9863381-9863400 | Msa1092660:intron | 30.0% |
| TATATATGCATGCGAATTCT+TGG | + | chr7_3:9863455-9863474 | Msa1092660:intron | 30.0% | |
| TGTAACACATATACCTTCAT+GGG | + | chr7_3:9863547-9863566 | Msa1092660:intron | 30.0% | |
| GTTATGAAACATGAAATCCA+CGG | + | chr7_3:9863635-9863654 | Msa1092660:intron | 30.0% | |
| AGATACTTCGTGTATTTGAT+TGG | + | chr7_3:9863737-9863756 | Msa1092660:intron | 30.0% | |
| CATAATCAACTAATTGAACC+TGG | - | chr7_3:9863823-9863842 | None:intergenic | 30.0% | |
| ATGTCTATGTCTTACTTGTA+TGG | + | chr7_3:9863964-9863983 | Msa1092660:intron | 30.0% | |
| TGTCTATGTCTTACTTGTAT+GGG | + | chr7_3:9863965-9863984 | Msa1092660:intron | 30.0% | |
| AATGATAACATACATAGGAG+GGG | + | chr7_3:9864121-9864140 | Msa1092660:intron | 30.0% | |
| CTGTATAATACGGCATAAAA+TGG | - | chr7_3:9864155-9864174 | None:intergenic | 30.0% | |
| ! | CATTTTATGCCGTATTATAC+AGG | + | chr7_3:9864153-9864172 | Msa1092660:intron | 30.0% |
| TCAGATATTGTATCAAAGGA+CGG | - | chr7_3:9864195-9864214 | None:intergenic | 30.0% | |
| !! | TCTCTTACCAATTTGTTGAA+AGG | - | chr7_3:9864265-9864284 | None:intergenic | 30.0% |
| ! | ATGCTTCATTGTTACTTGAA+GGG | - | chr7_3:9864293-9864312 | None:intergenic | 30.0% |
| ! | TATGCTTCATTGTTACTTGA+AGG | - | chr7_3:9864294-9864313 | None:intergenic | 30.0% |
| AATAGTCGATACATAACCAT+GGG | + | chr7_3:9864331-9864350 | Msa1092660:intron | 30.0% | |
| TTTATGTATGCTTGCTTGTT+GGG | + | chr7_3:9864471-9864490 | Msa1092660:intron | 30.0% | |
| TCTCACATATAATACCTCAA+AGG | + | chr7_3:9864769-9864788 | Msa1092660:intron | 30.0% | |
| GTATAGAGATTTCATTCACT+TGG | - | chr7_3:9864841-9864860 | None:intergenic | 30.0% | |
| ! | ATCTATATTATGATGGAGAC+CGG | + | chr7_3:9864962-9864981 | Msa1092660:intron | 30.0% |
| !! | TGTTGAATAAGGGTGTTTAA+AGG | + | chr7_3:9865035-9865054 | Msa1092660:intron | 30.0% |
| !! | GTTGAATAAGGGTGTTTAAA+GGG | + | chr7_3:9865036-9865055 | Msa1092660:intron | 30.0% |
| TTATAGCATATGGATGATTG+TGG | - | chr7_3:9865091-9865110 | None:intergenic | 30.0% | |
| ! | TGATCTAGTTGGAATTTTGT+TGG | - | chr7_3:9865157-9865176 | None:intergenic | 30.0% |
| ! | AAGGAATATTCTTGCAGTTT+TGG | - | chr7_3:9865275-9865294 | None:intergenic | 30.0% |
| TGGAAAAGGAAGGATTAATT+GGG | - | chr7_3:9865486-9865505 | None:intergenic | 30.0% | |
| TTGGAAAAGGAAGGATTAAT+TGG | - | chr7_3:9865487-9865506 | None:intergenic | 30.0% | |
| AAATTTAAGCAAGCGATTGC+TGG | + | chr7_3:9862414-9862433 | Msa1092660:five_prime_UTR | 35.0% | |
| AAAGGAGGAGTGAAAAACAT+AGG | - | chr7_3:9862564-9862583 | None:intergenic | 35.0% | |
| ! | TATGTTTTTCACTCCTCCTT+TGG | + | chr7_3:9862563-9862582 | Msa1092660:CDS | 35.0% |
| AGATAAGTATTCACCAAAGG+AGG | - | chr7_3:9862579-9862598 | None:intergenic | 35.0% | |
| ! | AGAGTATTAAAGGGGATAGT+AGG | + | chr7_3:9862669-9862688 | Msa1092660:intron | 35.0% |
| TCCGGTCTCAAGTATATATA+AGG | + | chr7_3:9862827-9862846 | Msa1092660:intron | 35.0% | |
| GCACACATACAATAACACAA+GGG | + | chr7_3:9862900-9862919 | Msa1092660:intron | 35.0% | |
| TACAAGTAACATGCTAAGCA+AGG | + | chr7_3:9862950-9862969 | Msa1092660:intron | 35.0% | |
| TACCAAAGAAGAAGAATGCA+CGG | - | chr7_3:9863065-9863084 | None:intergenic | 35.0% | |
| CTGGATGAAACACAAATTTC+AGG | + | chr7_3:9863141-9863160 | Msa1092660:intron | 35.0% | |
| AGATAAAGTTCTTCATGTGG+TGG | + | chr7_3:9863354-9863373 | Msa1092660:intron | 35.0% | |
| !! | CTTTTGAAGAATGAAGATGG+AGG | + | chr7_3:9863380-9863399 | Msa1092660:intron | 35.0% |
| GTTAAGTGCAGTACAAAACA+TGG | - | chr7_3:9863435-9863454 | None:intergenic | 35.0% | |
| GTGTAACACATATACCTTCA+TGG | + | chr7_3:9863546-9863565 | Msa1092660:intron | 35.0% | |
| GTAACACATATACCTTCATG+GGG | + | chr7_3:9863548-9863567 | Msa1092660:intron | 35.0% | |
| AAAAAATTGTACCGAAAGCC+AGG | - | chr7_3:9863579-9863598 | None:intergenic | 35.0% | |
| TCTCTCAACTGTAATATGAG+TGG | - | chr7_3:9864015-9864034 | None:intergenic | 35.0% | |
| AGATATTGTATCAAAGGACG+GGG | - | chr7_3:9864193-9864212 | None:intergenic | 35.0% | |
| CAGATATTGTATCAAAGGAC+GGG | - | chr7_3:9864194-9864213 | None:intergenic | 35.0% | |
| GAATAGTCGATACATAACCA+TGG | + | chr7_3:9864330-9864349 | Msa1092660:intron | 35.0% | |
| ATAGTCGATACATAACCATG+GGG | + | chr7_3:9864332-9864351 | Msa1092660:intron | 35.0% | |
| GAAAAGGTAAGAATCGTCAT+AGG | + | chr7_3:9864361-9864380 | Msa1092660:intron | 35.0% | |
| CTTTATGTATGCTTGCTTGT+TGG | + | chr7_3:9864470-9864489 | Msa1092660:intron | 35.0% | |
| !! | TTCTTGAAAGCATCTCCATT+TGG | - | chr7_3:9864505-9864524 | None:intergenic | 35.0% |
| ! | TCTGAAACCCACAAATAATC+CGG | - | chr7_3:9864544-9864563 | None:intergenic | 35.0% |
| TATTTGTGGGTTTCAGAAGA+TGG | + | chr7_3:9864547-9864566 | Msa1092660:intron | 35.0% | |
| !! | CGAAGCTTTGAAACAACTAA+AGG | - | chr7_3:9864672-9864691 | None:intergenic | 35.0% |
| AAGCTTCGCTTCTATCTTTA+AGG | + | chr7_3:9864684-9864703 | Msa1092660:intron | 35.0% | |
| CTCTTCACTTAGTATAAACC+TGG | + | chr7_3:9864730-9864749 | Msa1092660:intron | 35.0% | |
| AGTATAAACCTGGAAACAGA+AGG | + | chr7_3:9864740-9864759 | Msa1092660:intron | 35.0% | |
| TACCAATTTCAAGCATCAGT+GGG | - | chr7_3:9864802-9864821 | None:intergenic | 35.0% | |
| ATACCAATTTCAAGCATCAG+TGG | - | chr7_3:9864803-9864822 | None:intergenic | 35.0% | |
| CAAGAACTATTCATGTTGCA+AGG | - | chr7_3:9864918-9864937 | None:intergenic | 35.0% | |
| AGATGAGATATTTGCTTCGA+AGG | - | chr7_3:9865007-9865026 | None:intergenic | 35.0% | |
| ! | CTAGTTGGAATTTTGTTGGA+AGG | - | chr7_3:9865153-9865172 | None:intergenic | 35.0% |
| ! | GATTATTTTCGATAAAGCCG+AGG | + | chr7_3:9865243-9865262 | Msa1092660:intron | 35.0% |
| !! | GGTTCTGATTTTGGTGAAAA+AGG | - | chr7_3:9865294-9865313 | None:intergenic | 35.0% |
| CATCAATCACACACAAACAA+TGG | - | chr7_3:9865457-9865476 | None:intergenic | 35.0% | |
| CATTGTTTGTGTGTGATTGA+TGG | + | chr7_3:9865455-9865474 | Msa1092660:intron | 35.0% | |
| !! | AGAAAGGTATTGGTTGGAAA+AGG | - | chr7_3:9865500-9865519 | None:intergenic | 35.0% |
| ! | TTCATGAAGGAGAAAGGTAT+TGG | - | chr7_3:9865510-9865529 | None:intergenic | 35.0% |
| AATACCTTTCTCCTTCATGA+AGG | + | chr7_3:9865509-9865528 | Msa1092660:intron | 35.0% | |
| ATTACTCAAGACCTTCATGA+AGG | - | chr7_3:9865523-9865542 | None:intergenic | 35.0% | |
| AAGCTACAACGACATTGAGA+AGG | + | chr7_3:9862475-9862494 | Msa1092660:five_prime_UTR | 40.0% | |
| AGCTACAACGACATTGAGAA+GGG | + | chr7_3:9862476-9862495 | Msa1092660:five_prime_UTR | 40.0% | |
| TGCAAACTAGTGATGGTCAT+TGG | + | chr7_3:9862520-9862539 | Msa1092660:exon | 40.0% | |
| CGCACACATACAATAACACA+AGG | + | chr7_3:9862899-9862918 | Msa1092660:intron | 40.0% | |
| TAGTTTAAGAGAGGACTGCT+AGG | - | chr7_3:9863003-9863022 | None:intergenic | 40.0% | |
| ACCAAAGAAGAAGAATGCAC+GGG | - | chr7_3:9863064-9863083 | None:intergenic | 40.0% | |
| !! | TGGTAACTTGGAAGTGTCAA+CGG | + | chr7_3:9863080-9863099 | Msa1092660:intron | 40.0% |
| CATTACGGGACATCTTGATT+TGG | + | chr7_3:9863177-9863196 | Msa1092660:CDS | 40.0% | |
| TCTCTTTGCGATACTCTTGT+GGG | - | chr7_3:9863207-9863226 | None:intergenic | 40.0% | |
| ATCTCTTTGCGATACTCTTG+TGG | - | chr7_3:9863208-9863227 | None:intergenic | 40.0% | |
| AGAAACTGGATTCGTGATCA+CGG | + | chr7_3:9863521-9863540 | Msa1092660:intron | 40.0% | |
| ! | TATTTTCTCTCGTTTCTCCG+TGG | - | chr7_3:9863655-9863674 | None:intergenic | 40.0% |
| ! | CTTCGTGTATTTGATTGGTC+TGG | + | chr7_3:9863742-9863761 | Msa1092660:intron | 40.0% |
| AAGGAAGGATCCAAAACTCT+GGG | - | chr7_3:9863783-9863802 | None:intergenic | 40.0% | |
| GCATTGGAAGAAATGAAGGA+AGG | - | chr7_3:9863798-9863817 | None:intergenic | 40.0% | |
| GGATGCATTGGAAGAAATGA+AGG | - | chr7_3:9863802-9863821 | None:intergenic | 40.0% | |
| TCATTTCTTCCAATGCATCC+AGG | + | chr7_3:9863802-9863821 | Msa1092660:intron | 40.0% | |
| CTAATTGAACCTGGATGCAT+TGG | - | chr7_3:9863814-9863833 | None:intergenic | 40.0% | |
| TGTCTTACTTGTATGGGAAG+AGG | + | chr7_3:9863971-9863990 | Msa1092660:intron | 40.0% | |
| TTGTATGGGAAGAGGTTTGT+GGG | + | chr7_3:9863979-9863998 | Msa1092660:intron | 40.0% | |
| !! | TCGTTGGCCTTTCAACAAAT+TGG | + | chr7_3:9864255-9864274 | Msa1092660:intron | 40.0% |
| AATGAAGCATATCCACTACG+AGG | + | chr7_3:9864303-9864322 | Msa1092660:intron | 40.0% | |
| AAGAGTCCCGGATTATTTGT+GGG | + | chr7_3:9864534-9864553 | Msa1092660:intron | 40.0% | |
| CTGAAACCCACAAATAATCC+GGG | - | chr7_3:9864543-9864562 | None:intergenic | 40.0% | |
| ! | TGAAGAGTTGATCGAAGAAG+TGG | - | chr7_3:9864717-9864736 | None:intergenic | 40.0% |
| TAAACCTGGAAACAGAAGGA+AGG | + | chr7_3:9864744-9864763 | Msa1092660:intron | 40.0% | |
| AAACCTGGAAACAGAAGGAA+GGG | + | chr7_3:9864745-9864764 | Msa1092660:intron | 40.0% | |
| ! | GGAGTTTGATGGTCAAACAA+AGG | - | chr7_3:9864865-9864884 | None:intergenic | 40.0% |
| TTGTTTGACCATCAAACTCC+TGG | + | chr7_3:9864865-9864884 | Msa1092660:intron | 40.0% | |
| TAATGAAGTTCACTGGGATC+CGG | - | chr7_3:9864984-9865003 | None:intergenic | 40.0% | |
| CGAAGGTAATGAAGTTCACT+GGG | - | chr7_3:9864990-9865009 | None:intergenic | 40.0% | |
| TCGAAGGTAATGAAGTTCAC+TGG | - | chr7_3:9864991-9865010 | None:intergenic | 40.0% | |
| !! | GCAATTTTGTTGGTGAGAAG+AGG | - | chr7_3:9865126-9865145 | None:intergenic | 40.0% |
| ! | GTTGGAATTTTGTTGGAAGG+AGG | - | chr7_3:9865150-9865169 | None:intergenic | 40.0% |
| !! | ATTTTAGGGGAGGACAAAGA+TGG | - | chr7_3:9865197-9865216 | None:intergenic | 40.0% |
| !!! | TGCAGTTTTGGTTAAGTCCT+CGG | - | chr7_3:9865263-9865282 | None:intergenic | 40.0% |
| !!! | TGCTACTCTGGTTCTGATTT+TGG | - | chr7_3:9865303-9865322 | None:intergenic | 40.0% |
| GAAAGTGGAATTGCCAATGT+TGG | - | chr7_3:9865416-9865435 | None:intergenic | 40.0% | |
| ACGGAAATGGTTCAAGAAAG+TGG | - | chr7_3:9865431-9865450 | None:intergenic | 40.0% | |
| !! | AGGTATTGGTTGGAAAAGGA+AGG | - | chr7_3:9865496-9865515 | None:intergenic | 40.0% |
| !! | TGAAGGAGAAAGGTATTGGT+TGG | - | chr7_3:9865506-9865525 | None:intergenic | 40.0% |
| AAGACCTTCATGAAGGAGAA+AGG | - | chr7_3:9865516-9865535 | None:intergenic | 40.0% | |
| GCTGGTGTGAAGATAGAAGA+TGG | + | chr7_3:9862432-9862451 | Msa1092660:five_prime_UTR | 45.0% | |
| GCTACAACGACATTGAGAAG+GGG | + | chr7_3:9862477-9862496 | Msa1092660:five_prime_UTR | 45.0% | |
| ! | CACTAGTTTGCAATGCTGCT+AGG | - | chr7_3:9862512-9862531 | None:intergenic | 45.0% |
| GCAGCATTGCAAACTAGTGA+TGG | + | chr7_3:9862513-9862532 | Msa1092660:exon | 45.0% | |
| ATAGGACCAGCAATTTGAGC+AGG | - | chr7_3:9862546-9862565 | None:intergenic | 45.0% | |
| TCCCGTGCATTCTTCTTCTT+TGG | + | chr7_3:9863060-9863079 | Msa1092660:intron | 45.0% | |
| TGAAGAATGAAGATGGAGGG+TGG | + | chr7_3:9863384-9863403 | Msa1092660:intron | 45.0% | |
| GAAGAATGAAGATGGAGGGT+GGG | + | chr7_3:9863385-9863404 | Msa1092660:intron | 45.0% | |
| AAGAATGAAGATGGAGGGTG+GGG | + | chr7_3:9863386-9863405 | Msa1092660:intron | 45.0% | |
| TGCATGCGAATTCTTGGTGA+AGG | + | chr7_3:9863461-9863480 | Msa1092660:intron | 45.0% | |
| GCATGCGAATTCTTGGTGAA+GGG | + | chr7_3:9863462-9863481 | Msa1092660:intron | 45.0% | |
| CTTGTGCAAGAGCAAGAAAC+TGG | + | chr7_3:9863507-9863526 | Msa1092660:intron | 45.0% | |
| TACCTTCATGGGGAAAAACC+TGG | + | chr7_3:9863558-9863577 | Msa1092660:intron | 45.0% | |
| ! | ATGGGGAAAAACCTGGCTTT+CGG | + | chr7_3:9863565-9863584 | Msa1092660:intron | 45.0% |
| AGGAAGGATCCAAAACTCTG+GGG | - | chr7_3:9863782-9863801 | None:intergenic | 45.0% | |
| GAAGGAAGGATCCAAAACTC+TGG | - | chr7_3:9863784-9863803 | None:intergenic | 45.0% | |
| CTTGTATGGGAAGAGGTTTG+TGG | + | chr7_3:9863978-9863997 | Msa1092660:intron | 45.0% | |
| TCACCTTTGCACATAGGTGA+CGG | - | chr7_3:9864083-9864102 | None:intergenic | 45.0% | |
| TCACCTATGTGCAAAGGTGA+AGG | + | chr7_3:9864083-9864102 | Msa1092660:intron | 45.0% | |
| TGACCTTCACCTTTGCACAT+AGG | - | chr7_3:9864089-9864108 | None:intergenic | 45.0% | |
| GACTATTCTCATCCTCGTAG+TGG | - | chr7_3:9864318-9864337 | None:intergenic | 45.0% | |
| AACCATGGGGTCTGTAGAAA+AGG | + | chr7_3:9864345-9864364 | Msa1092660:intron | 45.0% | |
| ! | TACCTTTTCTACAGACCCCA+TGG | - | chr7_3:9864350-9864369 | None:intergenic | 45.0% |
| ! | ATGTATGCTTGCTTGTTGGG+TGG | + | chr7_3:9864474-9864493 | Msa1092660:intron | 45.0% |
| TGTTGGGTGGAAGATCCAAA+TGG | + | chr7_3:9864487-9864506 | Msa1092660:intron | 45.0% | |
| CAAGAGTCCCGGATTATTTG+TGG | + | chr7_3:9864533-9864552 | Msa1092660:intron | 45.0% | |
| AGAAGATGGAATGACCATGC+AGG | + | chr7_3:9864561-9864580 | Msa1092660:intron | 45.0% | |
| AGTTGATCGAAGAAGTGGCA+CGG | - | chr7_3:9864712-9864731 | None:intergenic | 45.0% | |
| TGCCCACTGATGCTTGAAAT+TGG | + | chr7_3:9864797-9864816 | Msa1092660:intron | 45.0% | |
| ACCATCAAACTCCTGGTGAT+AGG | + | chr7_3:9864872-9864891 | Msa1092660:intron | 45.0% | |
| ACCTATCACCAGGAGTTTGA+TGG | - | chr7_3:9864876-9864895 | None:intergenic | 45.0% | |
| ! | GGAAGGAGGAGCAATTTTGT+TGG | - | chr7_3:9865136-9865155 | None:intergenic | 45.0% |
| CGCAACGGAAATGATCTAGT+TGG | - | chr7_3:9865168-9865187 | None:intergenic | 45.0% | |
| GTGGAATTGCCAATGTTGGA+GGG | - | chr7_3:9865412-9865431 | None:intergenic | 45.0% | |
| AGTGGAATTGCCAATGTTGG+AGG | - | chr7_3:9865413-9865432 | None:intergenic | 45.0% | |
| CAAACAATGGCGAACGGAAA+TGG | - | chr7_3:9865444-9865463 | None:intergenic | 45.0% | |
| CACACACAAACAATGGCGAA+CGG | - | chr7_3:9865450-9865469 | None:intergenic | 45.0% | |
| !!! | TTTTTAAAAATATAATGTTT+TGG | - | chr7_3:9862776-9862795 | None:intergenic | 5.0% |
| !!! | ATCTAATAATTTTTATTTTA+GGG | - | chr7_3:9865211-9865230 | None:intergenic | 5.0% |
| !!! | AATCTAATAATTTTTATTTT+AGG | - | chr7_3:9865212-9865231 | None:intergenic | 5.0% |
| ! | CATTGGCCTGCTCAAATTGC+TGG | + | chr7_3:9862537-9862556 | Msa1092660:CDS | 50.0% |
| ATTCTTGGTGAAGGGCCTGA+TGG | + | chr7_3:9863470-9863489 | Msa1092660:intron | 50.0% | |
| GCATTGTCTTGACCTCCATC+AGG | - | chr7_3:9863488-9863507 | None:intergenic | 50.0% | |
| AACTGGATTCGTGATCACGG+TGG | + | chr7_3:9863524-9863543 | Msa1092660:intron | 50.0% | |
| ! | AGCCAGGTTTTTCCCCATGA+AGG | - | chr7_3:9863563-9863582 | None:intergenic | 50.0% |
| ! | ATCCAATGCCCCCAGAGTTT+TGG | + | chr7_3:9863770-9863789 | Msa1092660:intron | 50.0% |
| ! | ATCCAAAACTCTGGGGGCAT+TGG | - | chr7_3:9863775-9863794 | None:intergenic | 50.0% |
| GGAAGGATCCAAAACTCTGG+GGG | - | chr7_3:9863781-9863800 | None:intergenic | 50.0% | |
| CACCTTTGCACATAGGTGAC+GGG | - | chr7_3:9864082-9864101 | None:intergenic | 50.0% | |
| AAAGGCCAACGAGTGAGAAG+TGG | - | chr7_3:9864247-9864266 | None:intergenic | 50.0% | |
| ! | GAAGCATCTAGCAAGAGTCC+CGG | + | chr7_3:9864522-9864541 | Msa1092660:intron | 50.0% |
| !! | GCTCACTTGCTGCTTTCACA+GGG | - | chr7_3:9864650-9864669 | None:intergenic | 50.0% |
| GTTGATCGAAGAAGTGGCAC+GGG | - | chr7_3:9864711-9864730 | None:intergenic | 50.0% | |
| ACGCATGAGAACCTATCACC+AGG | - | chr7_3:9864886-9864905 | None:intergenic | 50.0% | |
| CAAAGATGGAGAGGTCGCAA+CGG | - | chr7_3:9865183-9865202 | None:intergenic | 50.0% | |
| TGTGCATTCGTGAGTAGGGA+GGG | - | chr7_3:9865331-9865350 | None:intergenic | 50.0% | |
| GGTGTGTGCATTCGTGAGTA+GGG | - | chr7_3:9865335-9865354 | None:intergenic | 50.0% | |
| AGGTGTGTGCATTCGTGAGT+AGG | - | chr7_3:9865336-9865355 | None:intergenic | 50.0% | |
| AGGGTGGGGTCTACACATTG+AGG | + | chr7_3:9863400-9863419 | Msa1092660:intron | 55.0% | |
| GGGTGGGGTCTACACATTGA+GGG | + | chr7_3:9863401-9863420 | Msa1092660:intron | 55.0% | |
| AGCCCGTCACCTATGTGCAA+AGG | + | chr7_3:9864077-9864096 | Msa1092660:intron | 55.0% | |
| GTGAGCCACTTCTCACTCGT+TGG | + | chr7_3:9864239-9864258 | Msa1092660:intron | 55.0% | |
| !! | GGCTCACTTGCTGCTTTCAC+AGG | - | chr7_3:9864651-9864670 | None:intergenic | 55.0% |
| GAGCCCTTCCTTCTGTTTCC+AGG | - | chr7_3:9864751-9864770 | None:intergenic | 55.0% | |
| CAGTGGGCAATGCTCCTTTG+AGG | - | chr7_3:9864786-9864805 | None:intergenic | 55.0% | |
| AGGGGAGGACAAAGATGGAG+AGG | - | chr7_3:9865192-9865211 | None:intergenic | 55.0% | |
| GTGTGCATTCGTGAGTAGGG+AGG | - | chr7_3:9865332-9865351 | None:intergenic | 55.0% | |
| !! | AAGTGGGTGGATTGCTCGAG+AGG | - | chr7_3:9865380-9865399 | None:intergenic | 55.0% |
| TCTCGAGCAATCCACCCACT+TGG | + | chr7_3:9865379-9865398 | Msa1092660:intron | 55.0% | |
| !! | TGGAGGGCACTGATCCAAGT+GGG | - | chr7_3:9865396-9865415 | None:intergenic | 55.0% |
| !! | TTGGAGGGCACTGATCCAAG+TGG | - | chr7_3:9865397-9865416 | None:intergenic | 55.0% |
| GGATCAGTGCCCTCCAACAT+TGG | + | chr7_3:9865400-9865419 | Msa1092660:intron | 55.0% | |
| CTTGGTGAAGGGCCTGATGG+AGG | + | chr7_3:9863473-9863492 | Msa1092660:intron | 60.0% | |
| CGTGCGTGTGCGTGTGTGAA+TGG | + | chr7_3:9864590-9864609 | Msa1092660:intron | 60.0% | |
| ! | GGGAGGGATCAGTGCTACTC+TGG | - | chr7_3:9865315-9865334 | None:intergenic | 60.0% |
| !! | AGGGCACTGATCCAAGTGGG+TGG | - | chr7_3:9865393-9865412 | None:intergenic | 60.0% |
| CACGCACGCACGCACCTGCA+TGG | - | chr7_3:9864578-9864597 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_3 | gene | 9862387 | 9865583 | 9862387 | ID=Msa1092660;Name=Msa1092660 |
| chr7_3 | mRNA | 9862387 | 9865583 | 9862387 | ID=Msa1092660-mRNA-1;Parent=Msa1092660;Name=Msa1092660-mRNA-1;_AED=0.09;_eAED=0.09;_QI=145|0.5|0.33|0.66|0.5|0.66|3|0|56 |
| chr7_3 | exon | 9862387 | 9862584 | 9862387 | ID=Msa1092660-mRNA-1:exon:2688;Parent=Msa1092660-mRNA-1 |
| chr7_3 | exon | 9863163 | 9863252 | 9863163 | ID=Msa1092660-mRNA-1:exon:2689;Parent=Msa1092660-mRNA-1 |
| chr7_3 | exon | 9865559 | 9865583 | 9865559 | ID=Msa1092660-mRNA-1:exon:2690;Parent=Msa1092660-mRNA-1 |
| chr7_3 | five_prime_UTR | 9862387 | 9862531 | 9862387 | ID=Msa1092660-mRNA-1:five_prime_utr;Parent=Msa1092660-mRNA-1 |
| chr7_3 | CDS | 9862532 | 9862584 | 9862532 | ID=Msa1092660-mRNA-1:cds;Parent=Msa1092660-mRNA-1 |
| chr7_3 | CDS | 9863163 | 9863252 | 9863163 | ID=Msa1092660-mRNA-1:cds;Parent=Msa1092660-mRNA-1 |
| chr7_3 | CDS | 9865559 | 9865583 | 9865559 | ID=Msa1092660-mRNA-1:cds;Parent=Msa1092660-mRNA-1 |
| Gene Sequence |
| Protein sequence |
