Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0014790 | Msa1056530 | 0.847888 | 8.695642e-60 | -8.615850e-47 |
| Msa0055650 | Msa1056530 | 0.800149 | 1.650254e-48 | -8.615850e-47 |
| Msa0056550 | Msa1056530 | 0.830577 | 2.714774e-55 | -8.615850e-47 |
| Msa0062750 | Msa1056530 | 0.801568 | 8.468988e-49 | -8.615850e-47 |
| Msa0067580 | Msa1056530 | 0.807497 | 4.912179e-50 | -8.615850e-47 |
| Msa0070090 | Msa1056530 | 0.826750 | 2.285667e-54 | -8.615850e-47 |
| Msa0073660 | Msa1056530 | 0.806847 | 6.742591e-50 | -8.615850e-47 |
| Msa0108950 | Msa1056530 | 0.806221 | 9.139642e-50 | -8.615850e-47 |
| Msa0117300 | Msa1056530 | 0.804502 | 2.095132e-49 | -8.615850e-47 |
| Msa0605230 | Msa1056530 | 0.841071 | 5.934028e-58 | -8.615850e-47 |
| Msa0617370 | Msa1056530 | 0.807172 | 5.755660e-50 | -8.615850e-47 |
| Msa0641020 | Msa1056530 | 0.808552 | 2.927967e-50 | -8.615850e-47 |
| Msa0648300 | Msa1056530 | 0.806084 | 9.765143e-50 | -8.615850e-47 |
| Msa0672850 | Msa1056530 | 0.805914 | 1.060544e-49 | -8.615850e-47 |
| Msa0678240 | Msa1056530 | 0.823876 | 1.093756e-53 | -8.615850e-47 |
| Msa0752580 | Msa1056530 | 0.827402 | 1.595670e-54 | -8.615850e-47 |
| Msa0754500 | Msa1056530 | 0.819277 | 1.264092e-52 | -8.615850e-47 |
| Msa0756410 | Msa1056530 | 0.802770 | 4.792065e-49 | -8.615850e-47 |
| Msa0756480 | Msa1056530 | 0.808313 | 3.293840e-50 | -8.615850e-47 |
| Msa0778580 | Msa1056530 | 0.837805 | 4.183796e-57 | -8.615850e-47 |
| Msa0815950 | Msa1056530 | 0.802210 | 6.250951e-49 | -8.615850e-47 |
| Msa0830900 | Msa1056530 | 0.821283 | 4.384604e-53 | -8.615850e-47 |
| Msa0835510 | Msa1056530 | 0.809293 | 2.032217e-50 | -8.615850e-47 |
| Msa0162070 | Msa1056530 | 0.809429 | 1.900437e-50 | -8.615850e-47 |
| Msa0211670 | Msa1056530 | 0.808103 | 3.649716e-50 | -8.615850e-47 |
| Msa0371610 | Msa1056530 | 0.805109 | 1.564042e-49 | -8.615850e-47 |
| Msa0389030 | Msa1056530 | 0.849898 | 2.405647e-60 | -8.615850e-47 |
| Msa0409820 | Msa1056530 | 0.809048 | 2.294321e-50 | -8.615850e-47 |
| Msa0440110 | Msa1056530 | 0.801054 | 1.078829e-48 | -8.615850e-47 |
| Msa0452010 | Msa1056530 | 0.827704 | 1.350865e-54 | -8.615850e-47 |
| Msa0984830 | Msa1056530 | 0.815790 | 7.717556e-52 | -8.615850e-47 |
| Msa0984840 | Msa1056530 | 0.805861 | 1.088017e-49 | -8.615850e-47 |
| Msa0984850 | Msa1056530 | 0.800621 | 1.322608e-48 | -8.615850e-47 |
| Msa0985430 | Msa1056530 | 0.807294 | 5.421715e-50 | -8.615850e-47 |
| Msa1026720 | Msa1056530 | 0.809775 | 1.601310e-50 | -8.615850e-47 |
| Msa1049950 | Msa1056530 | 0.802413 | 5.676277e-49 | -8.615850e-47 |
| Msa1056530 | Msa1073500 | 0.813805 | 2.124894e-51 | -8.615850e-47 |
| Msa1056530 | Msa1081700 | 0.802431 | 5.628124e-49 | -8.615850e-47 |
| Msa1056530 | Msa1092660 | 0.968433 | 1.139510e-128 | -8.615850e-47 |
| Msa1056530 | Msa1105850 | 0.825321 | 4.995837e-54 | -8.615850e-47 |
| Msa1056530 | Msa1135660 | 0.804946 | 1.691941e-49 | -8.615850e-47 |
| Msa1056530 | Msa1139240 | 0.802378 | 5.773037e-49 | -8.615850e-47 |
| Msa1056530 | Msa1182780 | 0.809523 | 1.814737e-50 | -8.615850e-47 |
| Msa1056530 | Msa1191390 | 0.835668 | 1.467780e-56 | -8.615850e-47 |
| Msa1056530 | Msa1231520 | 0.813997 | 1.928294e-51 | -8.615850e-47 |
| Msa1056530 | Msa1272130 | 0.816292 | 5.961867e-52 | -8.615850e-47 |
| Msa1056530 | Msa1279860 | 0.828667 | 7.914223e-55 | -8.615850e-47 |
| Msa1056530 | Msa1279870 | 0.810283 | 1.244987e-50 | -8.615850e-47 |
| Msa1056530 | Msa1287160 | 0.806165 | 9.392993e-50 | -8.615850e-47 |
| Msa1056530 | Msa1289500 | 0.838484 | 2.798519e-57 | -8.615850e-47 |
| Msa1056530 | Msa1343340 | 0.822351 | 2.481633e-53 | -8.615850e-47 |
| Msa1056530 | Msa1397540 | 0.802490 | 5.472199e-49 | -8.615850e-47 |
| Msa1056530 | Msa1445250 | 0.803200 | 3.904901e-49 | -8.615850e-47 |
| Msa1056530 | Msa1457070 | 0.830668 | 2.579291e-55 | -8.615850e-47 |
| Msa0270610 | Msa1056530 | 0.800613 | 1.327364e-48 | -8.615850e-47 |
| Msa0281780 | Msa1056530 | 0.805867 | 1.084939e-49 | -8.615850e-47 |
| Msa0323630 | Msa1056530 | 0.801716 | 7.897745e-49 | -8.615850e-47 |
| Msa0330400 | Msa1056530 | 0.802467 | 5.533612e-49 | -8.615850e-47 |
| Msa0883390 | Msa1056530 | 0.800100 | 1.688662e-48 | -8.615850e-47 |
| Msa0883430 | Msa1056530 | 0.809191 | 2.137483e-50 | -8.615850e-47 |
| Msa0883450 | Msa1056530 | 0.805957 | 1.038763e-49 | -8.615850e-47 |
| Msa0883660 | Msa1056530 | 0.809808 | 1.575496e-50 | -8.615850e-47 |
| Msa0885200 | Msa1056530 | 0.829816 | 4.166034e-55 | -8.615850e-47 |
| Msa0885220 | Msa1056530 | 0.827450 | 1.554435e-54 | -8.615850e-47 |
| Msa0887000 | Msa1056530 | 0.801138 | 1.037281e-48 | -8.615850e-47 |
| Msa0936430 | Msa1056530 | 0.809750 | 1.621934e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 15 sgRNAs with CRISPR-Local
Find 247 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CATTACGGGACATCTTGATT+TGG | 0.363637 | 7_2:+34144742 | Msa1056530:CDS |
| CATTGGCCTGCTCAAATTGC+TGG | 0.379850 | 7_2:+34144102 | Msa1056530:CDS |
| AAATTTAAGCAAGCGATTGC+TGG | 0.422061 | 7_2:+34143979 | Msa1056530:five_prime_UTR |
| TCGTTACATATATTGTCATC+AGG | 0.428039 | 7_2:+34144796 | Msa1056530:CDS |
| ATCTCTTTGCGATACTCTTG+TGG | 0.477953 | 7_2:-34144770 | None:intergenic |
| TGCAAACTAGTGATGGTCAT+TGG | 0.495361 | 7_2:+34144085 | Msa1056530:exon |
| TCTCTTTGCGATACTCTTGT+GGG | 0.513688 | 7_2:-34144769 | None:intergenic |
| CACTAGTTTGCAATGCTGCT+AGG | 0.560576 | 7_2:-34144074 | None:intergenic |
| AGCTACAACGACATTGAGAA+GGG | 0.563777 | 7_2:+34144041 | Msa1056530:five_prime_UTR |
| ATAGGACCAGCAATTTGAGC+AGG | 0.576160 | 7_2:-34144108 | None:intergenic |
| GCTGGTGTGAAGATAGAAGA+TGG | 0.578026 | 7_2:+34143997 | Msa1056530:five_prime_UTR |
| GCAGCATTGCAAACTAGTGA+TGG | 0.596816 | 7_2:+34144078 | Msa1056530:exon |
| AAGCTACAACGACATTGAGA+AGG | 0.604574 | 7_2:+34144040 | Msa1056530:five_prime_UTR |
| AGATAAGTATTCACCAAAGG+AGG | 0.608286 | 7_2:-34144141 | None:intergenic |
| GCTACAACGACATTGAGAAG+GGG | 0.704931 | 7_2:+34144042 | Msa1056530:five_prime_UTR |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTTTTTTTCTTTTTCAT+GGG | - | chr7_2:34144197-34144216 | None:intergenic | 10.0% |
| !!! | ATGTATTTTTTATATCATAA+TGG | + | chr7_2:34144431-34144450 | Msa1056530:intron | 10.0% |
| !! | AACTATATATATGTTAATAA+TGG | - | chr7_2:34146009-34146028 | None:intergenic | 10.0% |
| !!! | TCTAATAATTTTTATTTTAG+GGG | - | chr7_2:34146775-34146794 | None:intergenic | 10.0% |
| !!! | CTTTTTTTTTTTCTTTTTCA+TGG | - | chr7_2:34144198-34144217 | None:intergenic | 15.0% |
| !!! | AAACAATAAAGAGTATTAAA+GGG | + | chr7_2:34144225-34144244 | Msa1056530:intron | 15.0% |
| !!! | TTAGTATTTTCTTTCTTTAA+CGG | - | chr7_2:34144303-34144322 | None:intergenic | 15.0% |
| !! | AGAAAAATAAATTTACAACT+TGG | + | chr7_2:34144599-34144618 | Msa1056530:intron | 15.0% |
| !! | TATATATTTGCATAACAAAT+GGG | - | chr7_2:34144867-34144886 | None:intergenic | 15.0% |
| !! | ATATATATTTGCATAACAAA+TGG | - | chr7_2:34144868-34144887 | None:intergenic | 15.0% |
| !!! | TTTTCACATTAATTAATTGT+AGG | + | chr7_2:34145475-34145494 | Msa1056530:intron | 15.0% |
| !! | AATCTTATGAAAAAGTTAAT+TGG | + | chr7_2:34145614-34145633 | Msa1056530:intron | 15.0% |
| !! | TTAACATATATATAGTTATC+AGG | + | chr7_2:34146012-34146031 | Msa1056530:intron | 15.0% |
| !!! | GAAACAATAAAGAGTATTAA+AGG | + | chr7_2:34144224-34144243 | Msa1056530:intron | 20.0% |
| !!! | AACAATAAAGAGTATTAAAG+GGG | + | chr7_2:34144226-34144245 | Msa1056530:intron | 20.0% |
| !!! | GGTACAATTTTTTACATTTA+GGG | + | chr7_2:34145151-34145170 | Msa1056530:intron | 20.0% |
| !!! | ATTTTTTACATTTAGGGTTT+AGG | + | chr7_2:34145157-34145176 | Msa1056530:intron | 20.0% |
| !! | ATATAGTAGTAAATAGTTAG+CGG | - | chr7_2:34145256-34145275 | None:intergenic | 20.0% |
| !! | AATTAATTGTAGGTAAAATG+TGG | + | chr7_2:34145485-34145504 | Msa1056530:intron | 20.0% |
| !! | CTTTAAATGATAACATACAT+AGG | + | chr7_2:34145681-34145700 | Msa1056530:intron | 20.0% |
| !! | TTTGATACAATATCTGATTT+GGG | + | chr7_2:34145763-34145782 | Msa1056530:intron | 20.0% |
| !! | AGAAATTTGTAAATAGACAT+AGG | - | chr7_2:34146184-34146203 | None:intergenic | 20.0% |
| !!! | TTACTTTCATGTGTAATTTT+TGG | - | chr7_2:34146506-34146525 | None:intergenic | 20.0% |
| !! | AAGTAAGATCTATATTATGA+TGG | + | chr7_2:34146520-34146539 | Msa1056530:intron | 20.0% |
| !!! | AATAATTTTTATTTTAGGGG+AGG | - | chr7_2:34146772-34146791 | None:intergenic | 20.0% |
| !!! | TCGAAAATAATCTTTTTGAT+TGG | - | chr7_2:34146800-34146819 | None:intergenic | 20.0% |
| !! | GAAATACTTCAAAATTAAAC+AGG | - | chr7_2:34146921-34146940 | None:intergenic | 20.0% |
| !! | GTTTTTAATAAGCTAAGAGT+AGG | + | chr7_2:34144166-34144185 | Msa1056530:intron | 25.0% |
| !!! | TTTTTTCTTTTTCATGGGTT+AGG | - | chr7_2:34144192-34144211 | None:intergenic | 25.0% |
| !!! | AGGTTAATTGTTTTTAGCTA+AGG | + | chr7_2:34144254-34144273 | Msa1056530:intron | 25.0% |
| !!! | GGTTAATTGTTTTTAGCTAA+GGG | + | chr7_2:34144255-34144274 | Msa1056530:intron | 25.0% |
| ! | TATGAAAAAAATACTCTCTC+CGG | + | chr7_2:34144374-34144393 | Msa1056530:intron | 25.0% |
| !!! | GGTTTTTTGTGTTTACATTA+CGG | + | chr7_2:34144727-34144746 | Msa1056530:intron | 25.0% |
| !!! | GTTTTTTGTGTTTACATTAC+GGG | + | chr7_2:34144728-34144747 | Msa1056530:CDS | 25.0% |
| ! | GAACTTTATCTCAAATTTCA+TGG | - | chr7_2:34144910-34144929 | None:intergenic | 25.0% |
| !!! | TTTCTTTTGAAGAATGAAGA+TGG | + | chr7_2:34144942-34144961 | Msa1056530:intron | 25.0% |
| !!! | CGGTACAATTTTTTACATTT+AGG | + | chr7_2:34145150-34145169 | Msa1056530:intron | 25.0% |
| ! | CAGATAAAGAAAACATTTGA+AGG | - | chr7_2:34145281-34145300 | None:intergenic | 25.0% |
| ! | TAAATGATAACATACATAGG+AGG | + | chr7_2:34145684-34145703 | Msa1056530:intron | 25.0% |
| ! | AAATGATAACATACATAGGA+GGG | + | chr7_2:34145685-34145704 | Msa1056530:intron | 25.0% |
| ! | AAAGATCTTCCTGTATAATA+CGG | - | chr7_2:34145730-34145749 | None:intergenic | 25.0% |
| ! | CAAATCAGATATTGTATCAA+AGG | - | chr7_2:34145764-34145783 | None:intergenic | 25.0% |
| ! | CTTTGATACAATATCTGATT+TGG | + | chr7_2:34145762-34145781 | Msa1056530:intron | 25.0% |
| ! | TCTAAAGATCTTGTTGAATA+AGG | + | chr7_2:34146589-34146608 | Msa1056530:intron | 25.0% |
| ! | CTAAAGATCTTGTTGAATAA+GGG | + | chr7_2:34146590-34146609 | Msa1056530:intron | 25.0% |
| ! | TCTTCTTTCTTTATAGCATA+TGG | - | chr7_2:34146666-34146685 | None:intergenic | 25.0% |
| CAAAGATAAGTATTCACCAA+AGG | - | chr7_2:34144147-34144166 | None:intergenic | 30.0% | |
| !!! | TGTTTTTAGCTAAGGGATAA+AGG | + | chr7_2:34144262-34144281 | Msa1056530:intron | 30.0% |
| ACCTTATATATACTTGAGAC+CGG | - | chr7_2:34144396-34144415 | None:intergenic | 30.0% | |
| ! | TGTTACTTGTAATGCAAGTA+AGG | - | chr7_2:34144506-34144525 | None:intergenic | 30.0% |
| ! | AGTAGTGTTTAGTTTAAGAG+AGG | - | chr7_2:34144577-34144596 | None:intergenic | 30.0% |
| ! | ATTCTTCTTCTTTGGTAACT+TGG | + | chr7_2:34144633-34144652 | Msa1056530:intron | 30.0% |
| AGTCAAAAGTAAGTAACAAG+TGG | - | chr7_2:34144675-34144694 | None:intergenic | 30.0% | |
| !! | TTTTGACTATTTGATCAAGC+TGG | + | chr7_2:34144687-34144706 | Msa1056530:intron | 30.0% |
| TCGTTACATATATTGTCATC+AGG | + | chr7_2:34144796-34144815 | Msa1056530:CDS | 30.0% | |
| GTGAATTTGTATGCTGAAAT+TGG | - | chr7_2:34144845-34144864 | None:intergenic | 30.0% | |
| TCAAATTTCATGGCTAATCA+AGG | - | chr7_2:34144900-34144919 | None:intergenic | 30.0% | |
| TTGAGATAAAGTTCTTCATG+TGG | + | chr7_2:34144916-34144935 | Msa1056530:intron | 30.0% | |
| !! | TTTTGAAGAATGAAGATGGA+GGG | + | chr7_2:34144946-34144965 | Msa1056530:intron | 30.0% |
| TATATATGCATGCGAATTCT+TGG | + | chr7_2:34145020-34145039 | Msa1056530:intron | 30.0% | |
| TGTAACACATATACCTTCAT+GGG | + | chr7_2:34145112-34145131 | Msa1056530:intron | 30.0% | |
| GTTATGAAACATGAAATCCA+CGG | + | chr7_2:34145200-34145219 | Msa1056530:intron | 30.0% | |
| AGATACTTCGTGTATTTGAT+TGG | + | chr7_2:34145302-34145321 | Msa1056530:intron | 30.0% | |
| CATAATCAACTAATTGAACC+TGG | - | chr7_2:34145388-34145407 | None:intergenic | 30.0% | |
| ATGTCTATGTCTTACTTGTA+TGG | + | chr7_2:34145529-34145548 | Msa1056530:intron | 30.0% | |
| TGTCTATGTCTTACTTGTAT+GGG | + | chr7_2:34145530-34145549 | Msa1056530:intron | 30.0% | |
| AATGATAACATACATAGGAG+GGG | + | chr7_2:34145686-34145705 | Msa1056530:intron | 30.0% | |
| CTGTATAATACGGCATAAAA+TGG | - | chr7_2:34145720-34145739 | None:intergenic | 30.0% | |
| ! | CATTTTATGCCGTATTATAC+AGG | + | chr7_2:34145718-34145737 | Msa1056530:intron | 30.0% |
| TCAGATATTGTATCAAAGGA+CGG | - | chr7_2:34145760-34145779 | None:intergenic | 30.0% | |
| !! | TCTCTTACCAATTTGTTGAA+AGG | - | chr7_2:34145830-34145849 | None:intergenic | 30.0% |
| ! | ATGCTTCATTGTTACTTGAA+GGG | - | chr7_2:34145858-34145877 | None:intergenic | 30.0% |
| ! | TATGCTTCATTGTTACTTGA+AGG | - | chr7_2:34145859-34145878 | None:intergenic | 30.0% |
| AATAGTCGATACATAACCAT+GGG | + | chr7_2:34145896-34145915 | Msa1056530:intron | 30.0% | |
| TTTATGTATGCTTGCTTGTT+GGG | + | chr7_2:34146036-34146055 | Msa1056530:intron | 30.0% | |
| TCTCACATATAATACCTCAA+AGG | + | chr7_2:34146334-34146353 | Msa1056530:intron | 30.0% | |
| GTATAGAGATTTCATTCACT+TGG | - | chr7_2:34146406-34146425 | None:intergenic | 30.0% | |
| ! | ATCTATATTATGATGGAGAC+CGG | + | chr7_2:34146527-34146546 | Msa1056530:intron | 30.0% |
| !! | TGTTGAATAAGGGTGTTTAA+AGG | + | chr7_2:34146600-34146619 | Msa1056530:intron | 30.0% |
| !! | GTTGAATAAGGGTGTTTAAA+GGG | + | chr7_2:34146601-34146620 | Msa1056530:intron | 30.0% |
| TTATAGCATATGGATGATTG+TGG | - | chr7_2:34146656-34146675 | None:intergenic | 30.0% | |
| ! | TGATCTAGTTGGAATTTTGT+TGG | - | chr7_2:34146722-34146741 | None:intergenic | 30.0% |
| ! | AAGGAATATTCTTGCAGTTT+TGG | - | chr7_2:34146840-34146859 | None:intergenic | 30.0% |
| TGGAAAAGGAAGGATTAATT+GGG | - | chr7_2:34147051-34147070 | None:intergenic | 30.0% | |
| TTGGAAAAGGAAGGATTAAT+TGG | - | chr7_2:34147052-34147071 | None:intergenic | 30.0% | |
| AAATTTAAGCAAGCGATTGC+TGG | + | chr7_2:34143979-34143998 | Msa1056530:five_prime_UTR | 35.0% | |
| AAAGGAGGAGTGAAAAACAT+AGG | - | chr7_2:34144129-34144148 | None:intergenic | 35.0% | |
| ! | TATGTTTTTCACTCCTCCTT+TGG | + | chr7_2:34144128-34144147 | Msa1056530:CDS | 35.0% |
| AGATAAGTATTCACCAAAGG+AGG | - | chr7_2:34144144-34144163 | None:intergenic | 35.0% | |
| ! | AGAGTATTAAAGGGGATAGT+AGG | + | chr7_2:34144234-34144253 | Msa1056530:intron | 35.0% |
| TCCGGTCTCAAGTATATATA+AGG | + | chr7_2:34144392-34144411 | Msa1056530:intron | 35.0% | |
| GCACACATACAATAACACAA+GGG | + | chr7_2:34144465-34144484 | Msa1056530:intron | 35.0% | |
| TACAAGTAACATGCTAAGCA+AGG | + | chr7_2:34144515-34144534 | Msa1056530:intron | 35.0% | |
| TACCAAAGAAGAAGAATGCA+CGG | - | chr7_2:34144630-34144649 | None:intergenic | 35.0% | |
| CTGGATGAAACACAAATTTC+AGG | + | chr7_2:34144706-34144725 | Msa1056530:intron | 35.0% | |
| AGATAAAGTTCTTCATGTGG+TGG | + | chr7_2:34144919-34144938 | Msa1056530:intron | 35.0% | |
| !! | CTTTTGAAGAATGAAGATGG+AGG | + | chr7_2:34144945-34144964 | Msa1056530:intron | 35.0% |
| GTTAAGTGCAGTACAAAACA+TGG | - | chr7_2:34145000-34145019 | None:intergenic | 35.0% | |
| GTGTAACACATATACCTTCA+TGG | + | chr7_2:34145111-34145130 | Msa1056530:intron | 35.0% | |
| GTAACACATATACCTTCATG+GGG | + | chr7_2:34145113-34145132 | Msa1056530:intron | 35.0% | |
| AAAAAATTGTACCGAAAGCC+AGG | - | chr7_2:34145144-34145163 | None:intergenic | 35.0% | |
| TCTCTCAACTGTAATATGAG+TGG | - | chr7_2:34145580-34145599 | None:intergenic | 35.0% | |
| AGATATTGTATCAAAGGACG+GGG | - | chr7_2:34145758-34145777 | None:intergenic | 35.0% | |
| CAGATATTGTATCAAAGGAC+GGG | - | chr7_2:34145759-34145778 | None:intergenic | 35.0% | |
| GAATAGTCGATACATAACCA+TGG | + | chr7_2:34145895-34145914 | Msa1056530:intron | 35.0% | |
| ATAGTCGATACATAACCATG+GGG | + | chr7_2:34145897-34145916 | Msa1056530:intron | 35.0% | |
| GAAAAGGTAAGAATCGTCAT+AGG | + | chr7_2:34145926-34145945 | Msa1056530:intron | 35.0% | |
| CTTTATGTATGCTTGCTTGT+TGG | + | chr7_2:34146035-34146054 | Msa1056530:intron | 35.0% | |
| !! | TTCTTGAAAGCATCTCCATT+TGG | - | chr7_2:34146070-34146089 | None:intergenic | 35.0% |
| ! | TCTGAAACCCACAAATAATC+CGG | - | chr7_2:34146109-34146128 | None:intergenic | 35.0% |
| TATTTGTGGGTTTCAGAAGA+TGG | + | chr7_2:34146112-34146131 | Msa1056530:intron | 35.0% | |
| !! | CGAAGCTTTGAAACAACTAA+AGG | - | chr7_2:34146237-34146256 | None:intergenic | 35.0% |
| AAGCTTCGCTTCTATCTTTA+AGG | + | chr7_2:34146249-34146268 | Msa1056530:intron | 35.0% | |
| CTCTTCACTTAGTATAAACC+TGG | + | chr7_2:34146295-34146314 | Msa1056530:intron | 35.0% | |
| AGTATAAACCTGGAAACAGA+AGG | + | chr7_2:34146305-34146324 | Msa1056530:intron | 35.0% | |
| TACCAATTTCAAGCATCAGT+GGG | - | chr7_2:34146367-34146386 | None:intergenic | 35.0% | |
| ATACCAATTTCAAGCATCAG+TGG | - | chr7_2:34146368-34146387 | None:intergenic | 35.0% | |
| CAAGAACTATTCATGTTGCA+AGG | - | chr7_2:34146483-34146502 | None:intergenic | 35.0% | |
| AGATGAGATATTTGCTTCGA+AGG | - | chr7_2:34146572-34146591 | None:intergenic | 35.0% | |
| ! | CTAGTTGGAATTTTGTTGGA+AGG | - | chr7_2:34146718-34146737 | None:intergenic | 35.0% |
| ! | GATTATTTTCGATAAAGCCG+AGG | + | chr7_2:34146808-34146827 | Msa1056530:intron | 35.0% |
| !! | GGTTCTGATTTTGGTGAAAA+AGG | - | chr7_2:34146859-34146878 | None:intergenic | 35.0% |
| CATCAATCACACACAAACAA+TGG | - | chr7_2:34147022-34147041 | None:intergenic | 35.0% | |
| CATTGTTTGTGTGTGATTGA+TGG | + | chr7_2:34147020-34147039 | Msa1056530:intron | 35.0% | |
| !! | AGAAAGGTATTGGTTGGAAA+AGG | - | chr7_2:34147065-34147084 | None:intergenic | 35.0% |
| ! | TTCATGAAGGAGAAAGGTAT+TGG | - | chr7_2:34147075-34147094 | None:intergenic | 35.0% |
| AATACCTTTCTCCTTCATGA+AGG | + | chr7_2:34147074-34147093 | Msa1056530:intron | 35.0% | |
| ATTACTCAAGACCTTCATGA+AGG | - | chr7_2:34147088-34147107 | None:intergenic | 35.0% | |
| AAGCTACAACGACATTGAGA+AGG | + | chr7_2:34144040-34144059 | Msa1056530:five_prime_UTR | 40.0% | |
| AGCTACAACGACATTGAGAA+GGG | + | chr7_2:34144041-34144060 | Msa1056530:five_prime_UTR | 40.0% | |
| TGCAAACTAGTGATGGTCAT+TGG | + | chr7_2:34144085-34144104 | Msa1056530:exon | 40.0% | |
| CGCACACATACAATAACACA+AGG | + | chr7_2:34144464-34144483 | Msa1056530:intron | 40.0% | |
| TAGTTTAAGAGAGGACTGCT+AGG | - | chr7_2:34144568-34144587 | None:intergenic | 40.0% | |
| ACCAAAGAAGAAGAATGCAC+GGG | - | chr7_2:34144629-34144648 | None:intergenic | 40.0% | |
| !! | TGGTAACTTGGAAGTGTCAA+CGG | + | chr7_2:34144645-34144664 | Msa1056530:intron | 40.0% |
| CATTACGGGACATCTTGATT+TGG | + | chr7_2:34144742-34144761 | Msa1056530:CDS | 40.0% | |
| TCTCTTTGCGATACTCTTGT+GGG | - | chr7_2:34144772-34144791 | None:intergenic | 40.0% | |
| ATCTCTTTGCGATACTCTTG+TGG | - | chr7_2:34144773-34144792 | None:intergenic | 40.0% | |
| AGAAACTGGATTCGTGATCA+CGG | + | chr7_2:34145086-34145105 | Msa1056530:intron | 40.0% | |
| ! | TATTTTCTCTCGTTTCTCCG+TGG | - | chr7_2:34145220-34145239 | None:intergenic | 40.0% |
| ! | CTTCGTGTATTTGATTGGTC+TGG | + | chr7_2:34145307-34145326 | Msa1056530:intron | 40.0% |
| AAGGAAGGATCCAAAACTCT+GGG | - | chr7_2:34145348-34145367 | None:intergenic | 40.0% | |
| GCATTGGAAGAAATGAAGGA+AGG | - | chr7_2:34145363-34145382 | None:intergenic | 40.0% | |
| GGATGCATTGGAAGAAATGA+AGG | - | chr7_2:34145367-34145386 | None:intergenic | 40.0% | |
| TCATTTCTTCCAATGCATCC+AGG | + | chr7_2:34145367-34145386 | Msa1056530:intron | 40.0% | |
| CTAATTGAACCTGGATGCAT+TGG | - | chr7_2:34145379-34145398 | None:intergenic | 40.0% | |
| TGTCTTACTTGTATGGGAAG+AGG | + | chr7_2:34145536-34145555 | Msa1056530:intron | 40.0% | |
| TTGTATGGGAAGAGGTTTGT+GGG | + | chr7_2:34145544-34145563 | Msa1056530:intron | 40.0% | |
| !! | TCGTTGGCCTTTCAACAAAT+TGG | + | chr7_2:34145820-34145839 | Msa1056530:intron | 40.0% |
| AATGAAGCATATCCACTACG+AGG | + | chr7_2:34145868-34145887 | Msa1056530:intron | 40.0% | |
| AAGAGTCCCGGATTATTTGT+GGG | + | chr7_2:34146099-34146118 | Msa1056530:intron | 40.0% | |
| CTGAAACCCACAAATAATCC+GGG | - | chr7_2:34146108-34146127 | None:intergenic | 40.0% | |
| ! | TGAAGAGTTGATCGAAGAAG+TGG | - | chr7_2:34146282-34146301 | None:intergenic | 40.0% |
| TAAACCTGGAAACAGAAGGA+AGG | + | chr7_2:34146309-34146328 | Msa1056530:intron | 40.0% | |
| AAACCTGGAAACAGAAGGAA+GGG | + | chr7_2:34146310-34146329 | Msa1056530:intron | 40.0% | |
| ! | GGAGTTTGATGGTCAAACAA+AGG | - | chr7_2:34146430-34146449 | None:intergenic | 40.0% |
| TTGTTTGACCATCAAACTCC+TGG | + | chr7_2:34146430-34146449 | Msa1056530:intron | 40.0% | |
| TAATGAAGTTCACTGGGATC+CGG | - | chr7_2:34146549-34146568 | None:intergenic | 40.0% | |
| CGAAGGTAATGAAGTTCACT+GGG | - | chr7_2:34146555-34146574 | None:intergenic | 40.0% | |
| TCGAAGGTAATGAAGTTCAC+TGG | - | chr7_2:34146556-34146575 | None:intergenic | 40.0% | |
| !! | GCAATTTTGTTGGTGAGAAG+AGG | - | chr7_2:34146691-34146710 | None:intergenic | 40.0% |
| ! | GTTGGAATTTTGTTGGAAGG+AGG | - | chr7_2:34146715-34146734 | None:intergenic | 40.0% |
| !! | ATTTTAGGGGAGGACAAAGA+TGG | - | chr7_2:34146762-34146781 | None:intergenic | 40.0% |
| !!! | TGCAGTTTTGGTTAAGTCCT+CGG | - | chr7_2:34146828-34146847 | None:intergenic | 40.0% |
| !!! | TGCTACTCTGGTTCTGATTT+TGG | - | chr7_2:34146868-34146887 | None:intergenic | 40.0% |
| GAAAGTGGAATTGCCAATGT+TGG | - | chr7_2:34146981-34147000 | None:intergenic | 40.0% | |
| ACGGAAATGGTTCAAGAAAG+TGG | - | chr7_2:34146996-34147015 | None:intergenic | 40.0% | |
| !! | AGGTATTGGTTGGAAAAGGA+AGG | - | chr7_2:34147061-34147080 | None:intergenic | 40.0% |
| !! | TGAAGGAGAAAGGTATTGGT+TGG | - | chr7_2:34147071-34147090 | None:intergenic | 40.0% |
| AAGACCTTCATGAAGGAGAA+AGG | - | chr7_2:34147081-34147100 | None:intergenic | 40.0% | |
| GCTGGTGTGAAGATAGAAGA+TGG | + | chr7_2:34143997-34144016 | Msa1056530:five_prime_UTR | 45.0% | |
| GCTACAACGACATTGAGAAG+GGG | + | chr7_2:34144042-34144061 | Msa1056530:five_prime_UTR | 45.0% | |
| ! | CACTAGTTTGCAATGCTGCT+AGG | - | chr7_2:34144077-34144096 | None:intergenic | 45.0% |
| GCAGCATTGCAAACTAGTGA+TGG | + | chr7_2:34144078-34144097 | Msa1056530:exon | 45.0% | |
| ATAGGACCAGCAATTTGAGC+AGG | - | chr7_2:34144111-34144130 | None:intergenic | 45.0% | |
| TCCCGTGCATTCTTCTTCTT+TGG | + | chr7_2:34144625-34144644 | Msa1056530:intron | 45.0% | |
| TGAAGAATGAAGATGGAGGG+TGG | + | chr7_2:34144949-34144968 | Msa1056530:intron | 45.0% | |
| GAAGAATGAAGATGGAGGGT+GGG | + | chr7_2:34144950-34144969 | Msa1056530:intron | 45.0% | |
| AAGAATGAAGATGGAGGGTG+GGG | + | chr7_2:34144951-34144970 | Msa1056530:intron | 45.0% | |
| TGCATGCGAATTCTTGGTGA+AGG | + | chr7_2:34145026-34145045 | Msa1056530:intron | 45.0% | |
| GCATGCGAATTCTTGGTGAA+GGG | + | chr7_2:34145027-34145046 | Msa1056530:intron | 45.0% | |
| CTTGTGCAAGAGCAAGAAAC+TGG | + | chr7_2:34145072-34145091 | Msa1056530:intron | 45.0% | |
| TACCTTCATGGGGAAAAACC+TGG | + | chr7_2:34145123-34145142 | Msa1056530:intron | 45.0% | |
| ! | ATGGGGAAAAACCTGGCTTT+CGG | + | chr7_2:34145130-34145149 | Msa1056530:intron | 45.0% |
| AGGAAGGATCCAAAACTCTG+GGG | - | chr7_2:34145347-34145366 | None:intergenic | 45.0% | |
| GAAGGAAGGATCCAAAACTC+TGG | - | chr7_2:34145349-34145368 | None:intergenic | 45.0% | |
| CTTGTATGGGAAGAGGTTTG+TGG | + | chr7_2:34145543-34145562 | Msa1056530:intron | 45.0% | |
| TCACCTTTGCACATAGGTGA+CGG | - | chr7_2:34145648-34145667 | None:intergenic | 45.0% | |
| TCACCTATGTGCAAAGGTGA+AGG | + | chr7_2:34145648-34145667 | Msa1056530:intron | 45.0% | |
| TGACCTTCACCTTTGCACAT+AGG | - | chr7_2:34145654-34145673 | None:intergenic | 45.0% | |
| GACTATTCTCATCCTCGTAG+TGG | - | chr7_2:34145883-34145902 | None:intergenic | 45.0% | |
| AACCATGGGGTCTGTAGAAA+AGG | + | chr7_2:34145910-34145929 | Msa1056530:intron | 45.0% | |
| ! | TACCTTTTCTACAGACCCCA+TGG | - | chr7_2:34145915-34145934 | None:intergenic | 45.0% |
| ! | ATGTATGCTTGCTTGTTGGG+TGG | + | chr7_2:34146039-34146058 | Msa1056530:intron | 45.0% |
| TGTTGGGTGGAAGATCCAAA+TGG | + | chr7_2:34146052-34146071 | Msa1056530:intron | 45.0% | |
| CAAGAGTCCCGGATTATTTG+TGG | + | chr7_2:34146098-34146117 | Msa1056530:intron | 45.0% | |
| AGAAGATGGAATGACCATGC+AGG | + | chr7_2:34146126-34146145 | Msa1056530:intron | 45.0% | |
| AGTTGATCGAAGAAGTGGCA+CGG | - | chr7_2:34146277-34146296 | None:intergenic | 45.0% | |
| TGCCCACTGATGCTTGAAAT+TGG | + | chr7_2:34146362-34146381 | Msa1056530:intron | 45.0% | |
| ACCATCAAACTCCTGGTGAT+AGG | + | chr7_2:34146437-34146456 | Msa1056530:intron | 45.0% | |
| ACCTATCACCAGGAGTTTGA+TGG | - | chr7_2:34146441-34146460 | None:intergenic | 45.0% | |
| ! | GGAAGGAGGAGCAATTTTGT+TGG | - | chr7_2:34146701-34146720 | None:intergenic | 45.0% |
| CGCAACGGAAATGATCTAGT+TGG | - | chr7_2:34146733-34146752 | None:intergenic | 45.0% | |
| GTGGAATTGCCAATGTTGGA+GGG | - | chr7_2:34146977-34146996 | None:intergenic | 45.0% | |
| AGTGGAATTGCCAATGTTGG+AGG | - | chr7_2:34146978-34146997 | None:intergenic | 45.0% | |
| CAAACAATGGCGAACGGAAA+TGG | - | chr7_2:34147009-34147028 | None:intergenic | 45.0% | |
| CACACACAAACAATGGCGAA+CGG | - | chr7_2:34147015-34147034 | None:intergenic | 45.0% | |
| !!! | TTTTTAAAAATATAATGTTT+TGG | - | chr7_2:34144341-34144360 | None:intergenic | 5.0% |
| !!! | ATCTAATAATTTTTATTTTA+GGG | - | chr7_2:34146776-34146795 | None:intergenic | 5.0% |
| !!! | AATCTAATAATTTTTATTTT+AGG | - | chr7_2:34146777-34146796 | None:intergenic | 5.0% |
| ! | CATTGGCCTGCTCAAATTGC+TGG | + | chr7_2:34144102-34144121 | Msa1056530:CDS | 50.0% |
| ATTCTTGGTGAAGGGCCTGA+TGG | + | chr7_2:34145035-34145054 | Msa1056530:intron | 50.0% | |
| GCATTGTCTTGACCTCCATC+AGG | - | chr7_2:34145053-34145072 | None:intergenic | 50.0% | |
| AACTGGATTCGTGATCACGG+TGG | + | chr7_2:34145089-34145108 | Msa1056530:intron | 50.0% | |
| ! | AGCCAGGTTTTTCCCCATGA+AGG | - | chr7_2:34145128-34145147 | None:intergenic | 50.0% |
| ! | ATCCAATGCCCCCAGAGTTT+TGG | + | chr7_2:34145335-34145354 | Msa1056530:intron | 50.0% |
| ! | ATCCAAAACTCTGGGGGCAT+TGG | - | chr7_2:34145340-34145359 | None:intergenic | 50.0% |
| GGAAGGATCCAAAACTCTGG+GGG | - | chr7_2:34145346-34145365 | None:intergenic | 50.0% | |
| CACCTTTGCACATAGGTGAC+GGG | - | chr7_2:34145647-34145666 | None:intergenic | 50.0% | |
| AAAGGCCAACGAGTGAGAAG+TGG | - | chr7_2:34145812-34145831 | None:intergenic | 50.0% | |
| ! | GAAGCATCTAGCAAGAGTCC+CGG | + | chr7_2:34146087-34146106 | Msa1056530:intron | 50.0% |
| !! | GCTCACTTGCTGCTTTCACA+GGG | - | chr7_2:34146215-34146234 | None:intergenic | 50.0% |
| GTTGATCGAAGAAGTGGCAC+GGG | - | chr7_2:34146276-34146295 | None:intergenic | 50.0% | |
| ACGCATGAGAACCTATCACC+AGG | - | chr7_2:34146451-34146470 | None:intergenic | 50.0% | |
| CAAAGATGGAGAGGTCGCAA+CGG | - | chr7_2:34146748-34146767 | None:intergenic | 50.0% | |
| TGTGCATTCGTGAGTAGGGA+GGG | - | chr7_2:34146896-34146915 | None:intergenic | 50.0% | |
| GGTGTGTGCATTCGTGAGTA+GGG | - | chr7_2:34146900-34146919 | None:intergenic | 50.0% | |
| AGGTGTGTGCATTCGTGAGT+AGG | - | chr7_2:34146901-34146920 | None:intergenic | 50.0% | |
| AGGGTGGGGTCTACACATTG+AGG | + | chr7_2:34144965-34144984 | Msa1056530:intron | 55.0% | |
| GGGTGGGGTCTACACATTGA+GGG | + | chr7_2:34144966-34144985 | Msa1056530:intron | 55.0% | |
| AGCCCGTCACCTATGTGCAA+AGG | + | chr7_2:34145642-34145661 | Msa1056530:intron | 55.0% | |
| GTGAGCCACTTCTCACTCGT+TGG | + | chr7_2:34145804-34145823 | Msa1056530:intron | 55.0% | |
| !! | GGCTCACTTGCTGCTTTCAC+AGG | - | chr7_2:34146216-34146235 | None:intergenic | 55.0% |
| GAGCCCTTCCTTCTGTTTCC+AGG | - | chr7_2:34146316-34146335 | None:intergenic | 55.0% | |
| CAGTGGGCAATGCTCCTTTG+AGG | - | chr7_2:34146351-34146370 | None:intergenic | 55.0% | |
| AGGGGAGGACAAAGATGGAG+AGG | - | chr7_2:34146757-34146776 | None:intergenic | 55.0% | |
| GTGTGCATTCGTGAGTAGGG+AGG | - | chr7_2:34146897-34146916 | None:intergenic | 55.0% | |
| !! | AAGTGGGTGGATTGCTCGAG+AGG | - | chr7_2:34146945-34146964 | None:intergenic | 55.0% |
| TCTCGAGCAATCCACCCACT+TGG | + | chr7_2:34146944-34146963 | Msa1056530:intron | 55.0% | |
| !! | TGGAGGGCACTGATCCAAGT+GGG | - | chr7_2:34146961-34146980 | None:intergenic | 55.0% |
| !! | TTGGAGGGCACTGATCCAAG+TGG | - | chr7_2:34146962-34146981 | None:intergenic | 55.0% |
| GGATCAGTGCCCTCCAACAT+TGG | + | chr7_2:34146965-34146984 | Msa1056530:intron | 55.0% | |
| CTTGGTGAAGGGCCTGATGG+AGG | + | chr7_2:34145038-34145057 | Msa1056530:intron | 60.0% | |
| CGTGCGTGTGCGTGTGTGAA+TGG | + | chr7_2:34146155-34146174 | Msa1056530:intron | 60.0% | |
| ! | GGGAGGGATCAGTGCTACTC+TGG | - | chr7_2:34146880-34146899 | None:intergenic | 60.0% |
| !! | AGGGCACTGATCCAAGTGGG+TGG | - | chr7_2:34146958-34146977 | None:intergenic | 60.0% |
| CACGCACGCACGCACCTGCA+TGG | - | chr7_2:34146143-34146162 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_2 | gene | 34143952 | 34147148 | 34143952 | ID=Msa1056530;Name=Msa1056530 |
| chr7_2 | mRNA | 34143952 | 34147148 | 34143952 | ID=Msa1056530-mRNA-1;Parent=Msa1056530;Name=Msa1056530-mRNA-1;_AED=0.09;_eAED=0.09;_QI=145|0.5|0.33|0.66|0.5|0.66|3|0|56 |
| chr7_2 | exon | 34143952 | 34144149 | 34143952 | ID=Msa1056530-mRNA-1:exon:6730;Parent=Msa1056530-mRNA-1 |
| chr7_2 | exon | 34144728 | 34144817 | 34144728 | ID=Msa1056530-mRNA-1:exon:6731;Parent=Msa1056530-mRNA-1 |
| chr7_2 | exon | 34147124 | 34147148 | 34147124 | ID=Msa1056530-mRNA-1:exon:6732;Parent=Msa1056530-mRNA-1 |
| chr7_2 | five_prime_UTR | 34143952 | 34144096 | 34143952 | ID=Msa1056530-mRNA-1:five_prime_utr;Parent=Msa1056530-mRNA-1 |
| chr7_2 | CDS | 34144097 | 34144149 | 34144097 | ID=Msa1056530-mRNA-1:cds;Parent=Msa1056530-mRNA-1 |
| chr7_2 | CDS | 34144728 | 34144817 | 34144728 | ID=Msa1056530-mRNA-1:cds;Parent=Msa1056530-mRNA-1 |
| chr7_2 | CDS | 34147124 | 34147148 | 34147124 | ID=Msa1056530-mRNA-1:cds;Parent=Msa1056530-mRNA-1 |
| Gene Sequence |
| Protein sequence |
