AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0618490


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0618490 MtrunA17_Chr8g0381171 97.222 144 4 0 1 144 131 274 7.14e-98 282
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0618490 AT3G26085.4 74.825 143 36 0 2 144 127 269 9.90e-78 231
Msa0618490 AT3G26085.1 74.825 143 36 0 2 144 148 290 3.96e-77 231
Msa0618490 AT3G26085.3 74.825 143 36 0 2 144 168 310 4.51e-77 231
Msa0618490 AT3G26085.2 74.825 143 36 0 2 144 177 319 7.12e-77 231

Find 52 sgRNAs with CRISPR-Local

Find 248 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CGGCGCAGTTCTGCCACTTT+TGG 0.146735 4_2:+69454982 Msa0618490:CDS
CTGGTCTCATTGCTGCTTTC+GGG 0.149947 4_2:+69451884 Msa0618490:five_prime_UTR
TCTGGTCTCATTGCTGCTTT+CGG 0.246146 4_2:+69451883 Msa0618490:five_prime_UTR
ACCTTTGTTGGTCTTGTATA+CGG 0.257492 4_2:+69455249 Msa0618490:CDS
GCGGTAGCTGCTTTAATCTT+TGG 0.265287 4_2:+69455025 Msa0618490:CDS
CATCTAAGTTACCTGTCTAT+TGG 0.300999 4_2:-69453161 None:intergenic
CCTTAGCTCTCTCCAACCTT+TGG 0.311835 4_2:+69454815 Msa0618490:CDS
TAATTTGCATGACATAGTTT+TGG 0.319065 4_2:-69455605 None:intergenic
CAAGCTTGCATACTGACTTC+TGG 0.334409 4_2:+69451865 Msa0618490:five_prime_UTR
TGGCATCTTGAGTTGATTAC+AGG 0.340121 4_2:+69453061 Msa0618490:CDS
TAATGTTGTTATTGCCTGTT+AGG 0.340867 4_2:+69455686 Msa0618490:three_prime_UTR
GCCATAAAAGCCCTCCTATC+AGG 0.343970 4_2:-69455332 None:intergenic
TGTTTCAGGGCAACCTTTGT+TGG 0.366022 4_2:+69455237 Msa0618490:intron
ACATTTGCAAACAGATCTCT+TGG 0.391180 4_2:-69455490 None:intergenic
GAAACTATTCCTTTGCCATC+TGG 0.393537 4_2:+69455071 Msa0618490:CDS
TAAATTTAACTAATCCTAAC+AGG 0.408320 4_2:-69455700 None:intergenic
AACCTCCCCGTCGATGGGTT+TGG 0.409024 4_2:+69455434 Msa0618490:three_prime_UTR
AATAGAAGGATTGCCGGTCT+TGG 0.411237 4_2:+69452239 Msa0618490:five_prime_UTR
TCTCATGTTGCGTCAATAGA+AGG 0.415124 4_2:+69452225 Msa0618490:five_prime_UTR
TGGTGTTATATAGTATGATT+CGG 0.432403 4_2:+69455454 Msa0618490:three_prime_UTR
TGCGTCAATAGAAGGATTGC+CGG 0.432824 4_2:+69452233 Msa0618490:five_prime_UTR
CATGCAGTGAACAACCTGAT+AGG 0.453687 4_2:+69455318 Msa0618490:CDS
CTCTAGCCTTGCAGTTCCCA+TGG 0.454900 4_2:+69455290 Msa0618490:CDS
TCACTAGACTCAGCAAAATC+CGG 0.479458 4_2:-69453133 None:intergenic
GTCCAGTTCATTCCCAAAAG+TGG 0.502847 4_2:-69454995 None:intergenic
GCTATTTGCTATTGAAGACT+TGG 0.510606 4_2:+69453110 Msa0618490:CDS
CGGCAATATAATCCAAAGGT+TGG 0.521359 4_2:-69454827 None:intergenic
TAGTGAAGCAGCCAATAGAC+AGG 0.526883 4_2:+69453150 Msa0618490:CDS
TTATTCAACCTCCCCGTCGA+TGG 0.527644 4_2:+69455428 Msa0618490:three_prime_UTR
TATTCAACCTCCCCGTCGAT+GGG 0.537338 4_2:+69455429 Msa0618490:three_prime_UTR
GTTCACTGCATGAGAAGCCA+TGG 0.542051 4_2:-69455307 None:intergenic
TTTCGGGACAGTGATTCGCC+AGG 0.545417 4_2:+69451900 Msa0618490:five_prime_UTR
TTTGCTATTGAAGACTTGGC+CGG 0.547509 4_2:+69453114 Msa0618490:CDS
TCTGTAGAGCAGTCCAAGAC+CGG 0.556859 4_2:-69452252 None:intergenic
TTATCTATTGAGATGGAAGA+TGG 0.561734 4_2:-69455390 None:intergenic
ATAACACCAAACCCATCGAC+GGG 0.561879 4_2:-69455440 None:intergenic
GCAGTGAACAACCTGATAGG+AGG 0.562292 4_2:+69455321 Msa0618490:CDS
TAGCGAGTTATCTATTGAGA+TGG 0.563810 4_2:-69455397 None:intergenic
TATAACACCAAACCCATCGA+CGG 0.583976 4_2:-69455441 None:intergenic
CCAAAGGTTGGAGAGAGCTA+AGG 0.600412 4_2:-69454815 None:intergenic
CAGTGAACAACCTGATAGGA+GGG 0.604035 4_2:+69455322 Msa0618490:CDS
TCCGTATACAAGACCAACAA+AGG 0.604699 4_2:-69455250 None:intergenic
CATGGGAACTGCAAGGCTAG+AGG 0.618400 4_2:-69455289 None:intergenic
TTCACTGCATGAGAAGCCAT+GGG 0.629050 4_2:-69455306 None:intergenic
GGACATGCACCAGATGGCAA+AGG 0.641457 4_2:-69455080 None:intergenic
AATTCCAGGCAAAACTGCAA+CGG 0.649711 4_2:-69454847 None:intergenic
GAGAAGCCATGGGAACTGCA+AGG 0.658768 4_2:-69455296 None:intergenic
AATGAACTGGACGAGTATTG+CGG 0.660794 4_2:+69455006 Msa0618490:CDS
GCAACGGCAATATAATCCAA+AGG 0.664800 4_2:-69454831 None:intergenic
CACCAAACCCATCGACGGGG+AGG 0.673488 4_2:-69455436 None:intergenic
TAACACCAAACCCATCGACG+GGG 0.756934 4_2:-69455439 None:intergenic
AAAGTGGCAGAACTGCGCCG+CGG 0.783792 4_2:-69454979 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAATTTTAGTTATCTATTTA+TGG - chr4_2:69455635-69455654 None:intergenic 10.0%
!!! AATTATTATTAGAGTTTGTT+AGG - chr4_2:69453321-69453340 None:intergenic 15.0%
!!! TAGAATATTTCATGATTTTA+GGG - chr4_2:69453393-69453412 None:intergenic 15.0%
!!! TTAGAATATTTCATGATTTT+AGG - chr4_2:69453394-69453413 None:intergenic 15.0%
!! TAAAATATGAATGAATAGTT+TGG + chr4_2:69454484-69454503 Msa0618490:intron 15.0%
!! TTTGAATATTATATAGTAGA+TGG + chr4_2:69454654-69454673 Msa0618490:intron 15.0%
!! TGATGAAAAATAAATAAGAA+CGG - chr4_2:69454913-69454932 None:intergenic 15.0%
!! ATATTATTGTTTATGTTTCA+GGG + chr4_2:69455224-69455243 Msa0618490:intron 15.0%
!!! CTACATTTTATCTTAAAAAA+TGG - chr4_2:69455543-69455562 None:intergenic 15.0%
!!! CATTTTTTAAGATAAAATGT+AGG + chr4_2:69455541-69455560 Msa0618490:three_prime_UTR 15.0%
!! AATAGACAATACAATAGAAT+TGG - chr4_2:69451963-69451982 None:intergenic 20.0%
!! CAATAAACATACATTTCATT+TGG + chr4_2:69452005-69452024 Msa0618490:intron 20.0%
!!! ACGTTATCTTTTTATCAATT+TGG - chr4_2:69452357-69452376 None:intergenic 20.0%
!!! ATGTTGTACTTTTAAGTTTA+TGG - chr4_2:69452540-69452559 None:intergenic 20.0%
!! AATTATTAAGAACATTTCAG+AGG - chr4_2:69452565-69452584 None:intergenic 20.0%
!!! TCTGAAATGTTCTTAATAAT+TGG + chr4_2:69452564-69452583 Msa0618490:intron 20.0%
!! ATGCTATGATATATTTATTG+TGG + chr4_2:69452600-69452619 Msa0618490:intron 20.0%
!! TGCTATGATATATTTATTGT+GGG + chr4_2:69452601-69452620 Msa0618490:intron 20.0%
!!! ATATTTCACTGTTGATTTTA+TGG - chr4_2:69453191-69453210 None:intergenic 20.0%
!!! ATCTATTAAGGTTAGTTATT+GGG + chr4_2:69453428-69453447 Msa0618490:intron 20.0%
!!! TCCTTTTATTTCTTATTCAT+TGG + chr4_2:69453769-69453788 Msa0618490:intron 20.0%
!! ACCAATGAATAAGAAATAAA+AGG - chr4_2:69453773-69453792 None:intergenic 20.0%
!! ATTCATAGAAAATTGAATCA+CGG + chr4_2:69454039-69454058 Msa0618490:intron 20.0%
!!! AATATTTTGTTTTCCAAATC+AGG + chr4_2:69454791-69454810 Msa0618490:intron 20.0%
!!! AATCCAATTTTCAGAAATTA+GGG - chr4_2:69455104-69455123 None:intergenic 20.0%
!! AATATGATTCTAATTAGATC+AGG - chr4_2:69455209-69455228 None:intergenic 20.0%
!! CATATTATTGTTTATGTTTC+AGG + chr4_2:69455223-69455242 Msa0618490:intron 20.0%
!! AACAAAAAAATTAGATCACT+TGG + chr4_2:69455657-69455676 Msa0618490:three_prime_UTR 20.0%
!! TAAATTTAACTAATCCTAAC+AGG - chr4_2:69455703-69455722 None:intergenic 20.0%
!!! AATTTACCATTTTCCAAAAA+TGG + chr4_2:69455717-69455736 Msa0618490:three_prime_UTR 20.0%
! TACTGAAATAGTTTCTATGA+TGG - chr4_2:69452031-69452050 None:intergenic 25.0%
! ACTATTTCAGTATATTAGCA+AGG + chr4_2:69452039-69452058 Msa0618490:intron 25.0%
! GTGAAAATTATTGAACATGA+AGG + chr4_2:69452491-69452510 Msa0618490:intron 25.0%
!!! TGTACTTTTAAGTTTATGGT+TGG - chr4_2:69452536-69452555 None:intergenic 25.0%
! AATACATTAGAAGTCAATTC+AGG - chr4_2:69452700-69452719 None:intergenic 25.0%
! TACAGAAGCTATAACAAAAT+TGG - chr4_2:69452786-69452805 None:intergenic 25.0%
! TATAATTCTGTAATCACCAT+TGG - chr4_2:69452927-69452946 None:intergenic 25.0%
!! CTTTTCTGTTATAAAAGAGA+GGG - chr4_2:69453368-69453387 None:intergenic 25.0%
!! ACTTTTCTGTTATAAAAGAG+AGG - chr4_2:69453369-69453388 None:intergenic 25.0%
! CAATAACTAACCTTAATAGA+TGG - chr4_2:69453429-69453448 None:intergenic 25.0%
!! CATCTATTAAGGTTAGTTAT+TGG + chr4_2:69453427-69453446 Msa0618490:intron 25.0%
! ATGTGAGTTTCAGATTTAAA+AGG - chr4_2:69453591-69453610 None:intergenic 25.0%
!!! TTTTAAATCTGAAACTCACA+TGG + chr4_2:69453590-69453609 Msa0618490:intron 25.0%
! ATAAGAAATAAAAGGAAGTG+AGG - chr4_2:69453765-69453784 None:intergenic 25.0%
! TCAAAGATAAAACACTTACT+CGG - chr4_2:69453941-69453960 None:intergenic 25.0%
! ACTCATCAATTCAAAACAAA+AGG + chr4_2:69454114-69454133 Msa0618490:intron 25.0%
!!! ATTCAATAAGTGCTACTTTA+TGG - chr4_2:69454463-69454482 None:intergenic 25.0%
! AACGAAACTAGAAATAATTC+CGG + chr4_2:69454706-69454725 Msa0618490:intron 25.0%
! CAGAGTTTAGAAAACAAAAA+TGG - chr4_2:69454769-69454788 None:intergenic 25.0%
! TAAAACAGATTTACTCTTCT+TGG + chr4_2:69454878-69454897 Msa0618490:intron 25.0%
!! CAATCCAATTTTCAGAAATT+AGG - chr4_2:69455105-69455124 None:intergenic 25.0%
! AACAACACAACAATGAAAAA+TGG - chr4_2:69455184-69455203 None:intergenic 25.0%
!!! TGGTGTTATATAGTATGATT+CGG + chr4_2:69455454-69455473 Msa0618490:three_prime_UTR 25.0%
!!! TAATTTGCATGACATAGTTT+TGG - chr4_2:69455608-69455627 None:intergenic 25.0%
! AAAAATTAGATCACTTGGTT+TGG + chr4_2:69455662-69455681 Msa0618490:three_prime_UTR 25.0%
AAATGCAACAAAGTTGGAAA+CGG - chr4_2:69451938-69451957 None:intergenic 30.0%
TTGGAAAAATGCAACAAAGT+TGG - chr4_2:69451944-69451963 None:intergenic 30.0%
AAGGAGAATTAGTTGAATTC+AGG + chr4_2:69452058-69452077 Msa0618490:intron 30.0%
!!! ATCTTGTTTTTACAACTTGC+AGG + chr4_2:69452200-69452219 Msa0618490:intron 30.0%
TAAACATTGTCTCAAACATG+TGG + chr4_2:69452389-69452408 Msa0618490:intron 30.0%
! TGAAATGCACATGACAATTT+TGG + chr4_2:69452448-69452467 Msa0618490:intron 30.0%
!! GACAATTTTGGATTTTCAAG+TGG + chr4_2:69452460-69452479 Msa0618490:intron 30.0%
TGTTCTTAATAATTGGTGTG+AGG + chr4_2:69452571-69452590 Msa0618490:intron 30.0%
ATCCAAACTATCTTGTATTC+TGG + chr4_2:69452654-69452673 Msa0618490:intron 30.0%
TATTGTTCCCAAAGTTAGTT+AGG + chr4_2:69452739-69452758 Msa0618490:intron 30.0%
AACTAAGCCTAACTAACTTT+GGG - chr4_2:69452749-69452768 None:intergenic 30.0%
CTAACCTTAATAGATGGAAT+AGG - chr4_2:69453423-69453442 None:intergenic 30.0%
!!! TATGATAGAACACTGGTTTT+TGG - chr4_2:69453460-69453479 None:intergenic 30.0%
ACAATTACCTTAGGTTTAAG+AGG - chr4_2:69453686-69453705 None:intergenic 30.0%
CTACTCATAACAATTACCTT+AGG - chr4_2:69453695-69453714 None:intergenic 30.0%
TACAGTTAACAGAGAAAACT+GGG - chr4_2:69453825-69453844 None:intergenic 30.0%
TTACAGTTAACAGAGAAAAC+TGG - chr4_2:69453826-69453845 None:intergenic 30.0%
AAAGAACCAAAACTAACTGA+TGG - chr4_2:69453863-69453882 None:intergenic 30.0%
TAGTTAGTATTTGCAAGCTT+CGG + chr4_2:69453963-69453982 Msa0618490:intron 30.0%
TCTATGAATTCTCGTGAAAT+AGG - chr4_2:69454028-69454047 None:intergenic 30.0%
TGCACAAGACATTAAAATGA+CGG + chr4_2:69454158-69454177 Msa0618490:intron 30.0%
AAAGCTTTCGTTACCATTAA+CGG + chr4_2:69454256-69454275 Msa0618490:intron 30.0%
TTTAGTAACTCGTAACTGTT+GGG - chr4_2:69454516-69454535 None:intergenic 30.0%
ATTTAGTAACTCGTAACTGT+TGG - chr4_2:69454517-69454536 None:intergenic 30.0%
! TGTCCCTAATTTCTGAAAAT+TGG + chr4_2:69455098-69455117 Msa0618490:intron 30.0%
TTATCTATTGAGATGGAAGA+TGG - chr4_2:69455393-69455412 None:intergenic 30.0%
! TAATGTTGTTATTGCCTGTT+AGG + chr4_2:69455686-69455705 Msa0618490:three_prime_UTR 30.0%
TTTGGCTGGCATTAAGAAAT+CGG - chr4_2:69452106-69452125 None:intergenic 35.0%
TCTTGTGTAAAACCAAGCTT+TGG - chr4_2:69452124-69452143 None:intergenic 35.0%
CTTGTGTATGCAAATTTCCA+CGG - chr4_2:69452154-69452173 None:intergenic 35.0%
GAATTGAGAAACAGAAAAGC+AGG - chr4_2:69452310-69452329 None:intergenic 35.0%
ACCATAAAGCAATACTGTTG+TGG + chr4_2:69452416-69452435 Msa0618490:intron 35.0%
CCATAAAGCAATACTGTTGT+GGG + chr4_2:69452417-69452436 Msa0618490:intron 35.0%
CACCAGAATACAAGATAGTT+TGG - chr4_2:69452659-69452678 None:intergenic 35.0%
CAAACTATCTTGTATTCTGG+TGG + chr4_2:69452657-69452676 Msa0618490:intron 35.0%
GAACTAAGCCTAACTAACTT+TGG - chr4_2:69452750-69452769 None:intergenic 35.0%
TAGTTAGGCTTAGTTCAGTT+AGG + chr4_2:69452754-69452773 Msa0618490:intron 35.0%
! ATAACTGAGCTGATTTCTTG+TGG + chr4_2:69452953-69452972 Msa0618490:intron 35.0%
TTTCTCCTCTTATATGCAGT+TGG + chr4_2:69453028-69453047 Msa0618490:intron 35.0%
CAAAACCAACTGCATATAAG+AGG - chr4_2:69453036-69453055 None:intergenic 35.0%
!!! ATGCAGTTGGTTTTGAAATG+TGG + chr4_2:69453041-69453060 Msa0618490:intron 35.0%
!! GCTATTTGCTATTGAAGACT+TGG + chr4_2:69453110-69453129 Msa0618490:CDS 35.0%
CATCTAAGTTACCTGTCTAT+TGG - chr4_2:69453164-69453183 None:intergenic 35.0%
CAATAGACAGGTAACTTAGA+TGG + chr4_2:69453162-69453181 Msa0618490:intron 35.0%
CTGTTATAAAAGAGAGGGAA+GGG - chr4_2:69453363-69453382 None:intergenic 35.0%
TCTGTTATAAAAGAGAGGGA+AGG - chr4_2:69453364-69453383 None:intergenic 35.0%
GACTCCTATTCCATCTATTA+AGG + chr4_2:69453416-69453435 Msa0618490:intron 35.0%
! TAAGGTTAGTTATTGGGCTT+AGG + chr4_2:69453434-69453453 Msa0618490:intron 35.0%
CTTCACTTATGATAGAACAC+TGG - chr4_2:69453467-69453486 None:intergenic 35.0%
CAGTGTTCTATCATAAGTGA+AGG + chr4_2:69453465-69453484 Msa0618490:intron 35.0%
TCTATCATAAGTGAAGGAAC+TGG + chr4_2:69453471-69453490 Msa0618490:intron 35.0%
! AAGCACTGTTGAATGAAGAT+TGG + chr4_2:69453544-69453563 Msa0618490:intron 35.0%
! TAAATCTGAAACTCACATGG+TGG + chr4_2:69453593-69453612 Msa0618490:intron 35.0%
! CCTTTTCAGATTCTACTACT+TGG - chr4_2:69453632-69453651 None:intergenic 35.0%
CCAAGTAGTAGAATCTGAAA+AGG + chr4_2:69453629-69453648 Msa0618490:intron 35.0%
!! ATCTGAAAAGGAAGCATTGA+AGG + chr4_2:69453641-69453660 Msa0618490:intron 35.0%
TAAAACTGATGCCTTTGCTA+TGG + chr4_2:69453912-69453931 Msa0618490:intron 35.0%
!! GTGAAATAGGAAGTGTTTGA+CGG - chr4_2:69454015-69454034 None:intergenic 35.0%
GTTACCATTAACGGAAAACT+GGG + chr4_2:69454265-69454284 Msa0618490:intron 35.0%
GTTACGAGTTACTAAATGCA+TGG + chr4_2:69454520-69454539 Msa0618490:intron 35.0%
! GCTATGAACTGATTCAGTTA+TGG - chr4_2:69454571-69454590 None:intergenic 35.0%
CCAAGCTTACACTATCTTAA+AGG - chr4_2:69454605-69454624 None:intergenic 35.0%
!! CCTTTAAGATAGTGTAAGCT+TGG + chr4_2:69454602-69454621 Msa0618490:intron 35.0%
! AAGCTTGGCATTGTTATTAG+CGG + chr4_2:69454617-69454636 Msa0618490:intron 35.0%
GTTGTGAGAAAAGTTATTGC+TGG - chr4_2:69454732-69454751 None:intergenic 35.0%
!! GTTTTAACCTCACTAATTCC+AGG - chr4_2:69454864-69454883 None:intergenic 35.0%
!!! ATCTTTGGTGTTTTGCACAT+AGG + chr4_2:69455040-69455059 Msa0618490:CDS 35.0%
!! ACCTTTGTTGGTCTTGTATA+CGG + chr4_2:69455249-69455268 Msa0618490:CDS 35.0%
TAGCGAGTTATCTATTGAGA+TGG - chr4_2:69455400-69455419 None:intergenic 35.0%
ACATTTGCAAACAGATCTCT+TGG - chr4_2:69455493-69455512 None:intergenic 35.0%
!!! ATGAGGCCATTTTTGGAAAA+TGG - chr4_2:69455726-69455745 None:intergenic 35.0%
!! AAAAGGAATGAGGCCATTTT+TGG - chr4_2:69455733-69455752 None:intergenic 35.0%
! AAAAATGGCCTCATTCCTTT+TGG + chr4_2:69455732-69455751 Msa0618490:three_prime_UTR 35.0%
! AAAATGGCCTCATTCCTTTT+GGG + chr4_2:69455733-69455752 Msa0618490:three_prime_UTR 35.0%
!!! TTCCTTTTGGGACAAAACTT+TGG + chr4_2:69455745-69455764 Msa0618490:three_prime_UTR 35.0%
!! AACCAAAGTTTTGTCCCAAA+AGG - chr4_2:69455750-69455769 None:intergenic 35.0%
!! CAAAGTTGGAAACGGATTGA+AGG - chr4_2:69451930-69451949 None:intergenic 40.0%
TTACACAAGATTGTTAGCCG+TGG + chr4_2:69452134-69452153 Msa0618490:intron 40.0%
TCTCATGTTGCGTCAATAGA+AGG + chr4_2:69452225-69452244 Msa0618490:five_prime_UTR 40.0%
CCCACAACAGTATTGCTTTA+TGG - chr4_2:69452420-69452439 None:intergenic 40.0%
!!! GGATTTTCAAGTGGTATCAC+AGG + chr4_2:69452469-69452488 Msa0618490:intron 40.0%
ACTATCTTGTATTCTGGTGG+TGG + chr4_2:69452660-69452679 Msa0618490:intron 40.0%
CTATCTTGTATTCTGGTGGT+GGG + chr4_2:69452661-69452680 Msa0618490:intron 40.0%
!! ACTTCTCTGAAGCTAACCAA+TGG + chr4_2:69452908-69452927 Msa0618490:intron 40.0%
!! TGGCATCTTGAGTTGATTAC+AGG + chr4_2:69453061-69453080 Msa0618490:CDS 40.0%
!! TTTGCTATTGAAGACTTGGC+CGG + chr4_2:69453114-69453133 Msa0618490:CDS 40.0%
TCACTAGACTCAGCAAAATC+CGG - chr4_2:69453136-69453155 None:intergenic 40.0%
ATGAGCTTAGAGCTCTACAA+TGG + chr4_2:69453232-69453251 Msa0618490:intron 40.0%
!! TGGTTAAGAGCATTATGCTC+TGG - chr4_2:69453286-69453305 None:intergenic 40.0%
TTGTTAGGAGAGTTTCTCTC+TGG - chr4_2:69453306-69453325 None:intergenic 40.0%
TTCAGATTCTACTACTTGGC+AGG - chr4_2:69453628-69453647 None:intergenic 40.0%
CACAGATCCTCTTAAACCTA+AGG + chr4_2:69453676-69453695 Msa0618490:intron 40.0%
! TGCGTGAGAATTGATAATCG+TGG - chr4_2:69453739-69453758 None:intergenic 40.0%
ACCAAAACTAACTGATGGCT+CGG - chr4_2:69453858-69453877 None:intergenic 40.0%
!! AAATAGGAAGTGTTTGACGG+AGG - chr4_2:69454012-69454031 None:intergenic 40.0%
ATCAGTCATGTCGTGTAACA+AGG + chr4_2:69454075-69454094 Msa0618490:intron 40.0%
TTGATGAGTGACTACAGTGT+TGG - chr4_2:69454103-69454122 None:intergenic 40.0%
!!! TGGTTTTGGTTCTCTTCTTG+GGG - chr4_2:69454224-69454243 None:intergenic 40.0%
!!! GTGGTTTTGGTTCTCTTCTT+GGG - chr4_2:69454225-69454244 None:intergenic 40.0%
ACGAAAGCTTTCAAGCCATT+GGG - chr4_2:69454247-69454266 None:intergenic 40.0%
AACGAAAGCTTTCAAGCCAT+TGG - chr4_2:69454248-69454267 None:intergenic 40.0%
CGTTACCATTAACGGAAAAC+TGG + chr4_2:69454264-69454283 Msa0618490:intron 40.0%
TGAGACAAGTGCATAAGAGA+AGG + chr4_2:69454313-69454332 Msa0618490:intron 40.0%
TGCGTGAGAATCAATAATCG+TGG + chr4_2:69454353-69454372 Msa0618490:intron 40.0%
GCACTCCTAACAATTACCTT+TGG + chr4_2:69454398-69454417 Msa0618490:intron 40.0%
CTCCTAACAATTACCTTTGG+AGG + chr4_2:69454401-69454420 Msa0618490:intron 40.0%
AGCCTCCAAAGGTAATTGTT+AGG - chr4_2:69454406-69454425 None:intergenic 40.0%
! ATTACCTTTGGAGGCTTAAG+AGG + chr4_2:69454410-69454429 Msa0618490:intron 40.0%
TGAGAAAAGTTATTGCTGGC+CGG - chr4_2:69454728-69454747 None:intergenic 40.0%
CGGCAATATAATCCAAAGGT+TGG - chr4_2:69454830-69454849 None:intergenic 40.0%
GCAACGGCAATATAATCCAA+AGG - chr4_2:69454834-69454853 None:intergenic 40.0%
AATTCCAGGCAAAACTGCAA+CGG - chr4_2:69454850-69454869 None:intergenic 40.0%
! AGTTTTGCCTGGAATTAGTG+AGG + chr4_2:69454854-69454873 Msa0618490:CDS 40.0%
ATCCTACCATCTTGAATTCC+AGG + chr4_2:69454946-69454965 Msa0618490:intron 40.0%
TTCCTGGAATTCAAGATGGT+AGG - chr4_2:69454951-69454970 None:intergenic 40.0%
GTAGTTCCTGGAATTCAAGA+TGG - chr4_2:69454955-69454974 None:intergenic 40.0%
! AATGAACTGGACGAGTATTG+CGG + chr4_2:69455006-69455025 Msa0618490:CDS 40.0%
GAAACTATTCCTTTGCCATC+TGG + chr4_2:69455071-69455090 Msa0618490:CDS 40.0%
CATGGAGAGGATACGATAAA+AGG - chr4_2:69455140-69455159 None:intergenic 40.0%
! CTTTTATCGTATCCTCTCCA+TGG + chr4_2:69455138-69455157 Msa0618490:intron 40.0%
TCCGTATACAAGACCAACAA+AGG - chr4_2:69455253-69455272 None:intergenic 40.0%
TATAACACCAAACCCATCGA+CGG - chr4_2:69455444-69455463 None:intergenic 40.0%
! GTTTTGTCCCAAAAGGAATG+AGG - chr4_2:69455743-69455762 None:intergenic 40.0%
!! CAAGCTTGCATACTGACTTC+TGG + chr4_2:69451865-69451884 Msa0618490:five_prime_UTR 45.0%
!! TCTGGTCTCATTGCTGCTTT+CGG + chr4_2:69451883-69451902 Msa0618490:five_prime_UTR 45.0%
!! AAACGGATTGAAGGAGAACC+TGG - chr4_2:69451921-69451940 None:intergenic 45.0%
TCTTAATGCCAGCCAAAGCT+TGG + chr4_2:69452109-69452128 Msa0618490:intron 45.0%
! GTGTAAAACCAAGCTTTGGC+TGG - chr4_2:69452120-69452139 None:intergenic 45.0%
TGCGTCAATAGAAGGATTGC+CGG + chr4_2:69452233-69452252 Msa0618490:five_prime_UTR 45.0%
AATAGAAGGATTGCCGGTCT+TGG + chr4_2:69452239-69452258 Msa0618490:five_prime_UTR 45.0%
TGGGAACAATAGTGACTGTG+TGG - chr4_2:69452730-69452749 None:intergenic 45.0%
TAGTGAAGCAGCCAATAGAC+AGG + chr4_2:69453150-69453169 Msa0618490:CDS 45.0%
AGCTTAGAGCTCTACAATGG+TGG + chr4_2:69453235-69453254 Msa0618490:intron 45.0%
GCTTAGAGCTCTACAATGGT+GGG + chr4_2:69453236-69453255 Msa0618490:intron 45.0%
TGTCACACTGTCATTGCAGT+TGG + chr4_2:69453516-69453535 Msa0618490:intron 45.0%
!! AGGAAGCATTGAAGGTGAAG+TGG + chr4_2:69453649-69453668 Msa0618490:intron 45.0%
TAACAGAGAAAACTGGGAGC+AGG - chr4_2:69453819-69453838 None:intergenic 45.0%
!! TCCGAGCCATCAGTTAGTTT+TGG + chr4_2:69453854-69453873 Msa0618490:intron 45.0%
TTACTCGGACACCATAGCAA+AGG - chr4_2:69453926-69453945 None:intergenic 45.0%
!!! GGTGGTTTTGGTTCTCTTCT+TGG - chr4_2:69454226-69454245 None:intergenic 45.0%
AGAGAACCAAAACCACCCAA+TGG + chr4_2:69454229-69454248 Msa0618490:intron 45.0%
! TTCAAGCCATTGGGTGGTTT+TGG - chr4_2:69454238-69454257 None:intergenic 45.0%
AAAGCTTTCAAGCCATTGGG+TGG - chr4_2:69454244-69454263 None:intergenic 45.0%
! TGCTCCCAGTTTTCCGTTAA+TGG - chr4_2:69454272-69454291 None:intergenic 45.0%
ATTAACGGAAAACTGGGAGC+AGG + chr4_2:69454271-69454290 Msa0618490:intron 45.0%
AGTGCATAAGAGAAGGAAGC+AGG + chr4_2:69454320-69454339 Msa0618490:intron 45.0%
TGCATGCACGTTATAAGTCG+TGG + chr4_2:69454434-69454453 Msa0618490:intron 45.0%
AGAGAGCTAAGGACCTGATT+TGG - chr4_2:69454807-69454826 None:intergenic 45.0%
!! TTCCAGGAACTACTTTTCCG+CGG + chr4_2:69454962-69454981 Msa0618490:intron 45.0%
!!! TGCCACTTTTGGGAATGAAC+TGG + chr4_2:69454993-69455012 Msa0618490:CDS 45.0%
GTCCAGTTCATTCCCAAAAG+TGG - chr4_2:69454998-69455017 None:intergenic 45.0%
! GCGGTAGCTGCTTTAATCTT+TGG + chr4_2:69455025-69455044 Msa0618490:CDS 45.0%
! GGTGTTTTGCACATAGGCAA+TGG + chr4_2:69455046-69455065 Msa0618490:CDS 45.0%
AATTAGGGACATGCACCAGA+TGG - chr4_2:69455089-69455108 None:intergenic 45.0%
TGATCTACATGCCAATGCCA+TGG - chr4_2:69455158-69455177 None:intergenic 45.0%
TGTTTCAGGGCAACCTTTGT+TGG + chr4_2:69455237-69455256 Msa0618490:intron 45.0%
TTCACTGCATGAGAAGCCAT+GGG - chr4_2:69455309-69455328 None:intergenic 45.0%
CATGCAGTGAACAACCTGAT+AGG + chr4_2:69455318-69455337 Msa0618490:CDS 45.0%
CAGTGAACAACCTGATAGGA+GGG + chr4_2:69455322-69455341 Msa0618490:CDS 45.0%
! ACCTGATAGGAGGGCTTTTA+TGG + chr4_2:69455331-69455350 Msa0618490:CDS 45.0%
! TGATAGGAGGGCTTTTATGG+CGG + chr4_2:69455334-69455353 Msa0618490:CDS 45.0%
ATAACACCAAACCCATCGAC+GGG - chr4_2:69455443-69455462 None:intergenic 45.0%
!!! TATAATATTCAAATTTTAAA+TGG - chr4_2:69454647-69454666 None:intergenic 5.0%
!! CTGGTCTCATTGCTGCTTTC+GGG + chr4_2:69451884-69451903 Msa0618490:five_prime_UTR 50.0%
TCTGTAGAGCAGTCCAAGAC+CGG - chr4_2:69452255-69452274 None:intergenic 50.0%
GAAGGGTAGTGTGTAACTCG+TGG - chr4_2:69453346-69453365 None:intergenic 50.0%
GCATCCTCTTAAGCCTCCAA+AGG - chr4_2:69454417-69454436 None:intergenic 50.0%
CCAAAGGTTGGAGAGAGCTA+AGG - chr4_2:69454818-69454837 None:intergenic 50.0%
! CCTTAGCTCTCTCCAACCTT+TGG + chr4_2:69454815-69454834 Msa0618490:CDS 50.0%
! ATTGCCGTTGCAGTTTTGCC+TGG + chr4_2:69454843-69454862 Msa0618490:CDS 50.0%
TCGTATCCTCTCCATGGCAT+TGG + chr4_2:69455144-69455163 Msa0618490:intron 50.0%
TACATGCCAATGCCATGGAG+AGG - chr4_2:69455153-69455172 None:intergenic 50.0%
GTTCACTGCATGAGAAGCCA+TGG - chr4_2:69455310-69455329 None:intergenic 50.0%
GCAGTGAACAACCTGATAGG+AGG + chr4_2:69455321-69455340 Msa0618490:CDS 50.0%
GCCATAAAAGCCCTCCTATC+AGG - chr4_2:69455335-69455354 None:intergenic 50.0%
TTATTCAACCTCCCCGTCGA+TGG + chr4_2:69455428-69455447 Msa0618490:three_prime_UTR 50.0%
TATTCAACCTCCCCGTCGAT+GGG + chr4_2:69455429-69455448 Msa0618490:three_prime_UTR 50.0%
TAACACCAAACCCATCGACG+GGG - chr4_2:69455442-69455461 None:intergenic 50.0%
TTTCGGGACAGTGATTCGCC+AGG + chr4_2:69451900-69451919 Msa0618490:five_prime_UTR 55.0%
!!! GGCGCAGTTCTGCCACTTTT+GGG + chr4_2:69454983-69455002 Msa0618490:CDS 55.0%
GGACATGCACCAGATGGCAA+AGG - chr4_2:69455083-69455102 None:intergenic 55.0%
CATGGGAACTGCAAGGCTAG+AGG - chr4_2:69455292-69455311 None:intergenic 55.0%
!! CTCTAGCCTTGCAGTTCCCA+TGG + chr4_2:69455290-69455309 Msa0618490:CDS 55.0%
GAGAAGCCATGGGAACTGCA+AGG - chr4_2:69455299-69455318 None:intergenic 55.0%
CTGCTCCCGAGATCCTGTCT+CGG + chr4_2:69454195-69454214 Msa0618490:intron 60.0%
GGTCACCGAGACAGGATCTC+GGG - chr4_2:69454203-69454222 None:intergenic 60.0%
GGGTCACCGAGACAGGATCT+CGG - chr4_2:69454204-69454223 None:intergenic 60.0%
CTTCTTGGGGTCACCGAGAC+AGG - chr4_2:69454211-69454230 None:intergenic 60.0%
CGCCGCGGAAAAGTAGTTCC+TGG - chr4_2:69454967-69454986 None:intergenic 60.0%
AAAGTGGCAGAACTGCGCCG+CGG - chr4_2:69454982-69455001 None:intergenic 60.0%
!!! CGGCGCAGTTCTGCCACTTT+TGG + chr4_2:69454982-69455001 Msa0618490:CDS 60.0%
! AACCTCCCCGTCGATGGGTT+TGG + chr4_2:69455434-69455453 Msa0618490:three_prime_UTR 60.0%
CACCAAACCCATCGACGGGG+AGG - chr4_2:69455439-69455458 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr4_2 gene 69451853 69455780 69451853 ID=Msa0618490;Name=Msa0618490
chr4_2 mRNA 69451853 69455780 69451853 ID=Msa0618490-mRNA-1;Parent=Msa0618490;Name=Msa0618490-mRNA-1;_AED=0.28;_eAED=0.28;_QI=141|1|1|1|0.6|0.5|6|403|144
chr4_2 exon 69451853 69451921 69451853 ID=Msa0618490-mRNA-1:exon:20058;Parent=Msa0618490-mRNA-1
chr4_2 exon 69452222 69452282 69452222 ID=Msa0618490-mRNA-1:exon:20059;Parent=Msa0618490-mRNA-1
chr4_2 exon 69453047 69453171 69453047 ID=Msa0618490-mRNA-1:exon:20060;Parent=Msa0618490-mRNA-1
chr4_2 exon 69454813 69454875 69454813 ID=Msa0618490-mRNA-1:exon:20061;Parent=Msa0618490-mRNA-1
chr4_2 exon 69454968 69455092 69454968 ID=Msa0618490-mRNA-1:exon:20062;Parent=Msa0618490-mRNA-1
chr4_2 exon 69455245 69455780 69455245 ID=Msa0618490-mRNA-1:exon:20063;Parent=Msa0618490-mRNA-1
chr4_2 five_prime_UTR 69451853 69451921 69451853 ID=Msa0618490-mRNA-1:five_prime_utr;Parent=Msa0618490-mRNA-1
chr4_2 five_prime_UTR 69452222 69452282 69452222 ID=Msa0618490-mRNA-1:five_prime_utr;Parent=Msa0618490-mRNA-1
chr4_2 five_prime_UTR 69453047 69453057 69453047 ID=Msa0618490-mRNA-1:five_prime_utr;Parent=Msa0618490-mRNA-1
chr4_2 CDS 69453058 69453171 69453058 ID=Msa0618490-mRNA-1:cds;Parent=Msa0618490-mRNA-1
chr4_2 CDS 69454813 69454875 69454813 ID=Msa0618490-mRNA-1:cds;Parent=Msa0618490-mRNA-1
chr4_2 CDS 69454968 69455092 69454968 ID=Msa0618490-mRNA-1:cds;Parent=Msa0618490-mRNA-1
chr4_2 CDS 69455245 69455377 69455245 ID=Msa0618490-mRNA-1:cds;Parent=Msa0618490-mRNA-1
chr4_2 three_prime_UTR 69455378 69455780 69455378 ID=Msa0618490-mRNA-1:three_prime_utr;Parent=Msa0618490-mRNA-1
Gene Sequence

>Msa0618490

ATGTGGCATCTTGAGTTGATTACAGGAATTGTAGTATTAATATCATCAAGTCGCTATTTGCTATTGAAGACTTGGCCGGATTTTGCTGAGTCTAGTGAAGCAGCCAATAGACAGGTCCTTAGCTCTCTCCAACCTTTGGATTATATTGCCGTTGCAGTTTTGCCTGGAATTAGTGAGGAACTACTTTTCCGCGGCGCAGTTCTGCCACTTTTGGGAATGAACTGGACGAGTATTGCGGTAGCTGCTTTAATCTTTGGTGTTTTGCACATAGGCAATGGTCGAAACTATTCCTTTGCCATCTGGGCAACCTTTGTTGGTCTTGTATACGGATATGCTACAGTTTTATCCTCTAGCCTTGCAGTTCCCATGGCTTCTCATGCAGTGAACAACCTGATAGGAGGGCTTTTATGGCGGTACACATCAAAGCAGAAATGA

Protein sequence

>Msa0618490

MWHLELITGIVVLISSSRYLLLKTWPDFAESSEAANRQVLSSLQPLDYIAVAVLPGISEELLFRGAVLPLLGMNWTSIAVAALIFGVLHIGNGRNYSFAIWATFVGLVYGYATVLSSSLAVPMASHAVNNLIGGLLWRYTSKQK*