AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0629500


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0629500 MtrunA17_Chr4g0005861 93.841 276 13 3 1 273 1 275 0.0 526
Msa0629500 MtrunA17_Chr7g0241731 60.474 253 85 8 13 263 2 241 2.34e-84 253
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0629500 AT3G09050.1 51.852 243 102 5 29 262 7 243 3.52e-72 222

Find 58 sgRNAs with CRISPR-Local

Find 220 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGTTCGTCTTACGGATTATT+TGG 0.131531 4_3:+10340155 Msa0629500:CDS
CTGAATTTGTAACTTATATT+TGG 0.134552 4_3:+10342058 Msa0629500:three_prime_UTR
ATTGGTGAAGATGCTCTTAA+AGG 0.254433 4_3:+10340237 Msa0629500:CDS
AATGTTTACTTATTCTTCAT+TGG 0.294155 4_3:+10341550 Msa0629500:CDS
TGGAAGAAAGTTGCAGTTCT+TGG 0.299282 4_3:+10341631 Msa0629500:CDS
CCAAGTGAGTGCTTACAAAT+TGG 0.300920 4_3:+10341820 Msa0629500:three_prime_UTR
CCAGGTTGTGAAGTATTATC+AGG 0.334032 4_3:-10340075 None:intergenic
GAAACACGAGGATAAAACTA+TGG 0.335146 4_3:+10339876 Msa0629500:exon
GTTGATAGAAGAAGGATAGA+AGG 0.335400 4_3:-10339965 None:intergenic
GTAACAACAAATGAGGAAAA+TGG 0.350272 4_3:+10341511 Msa0629500:CDS
TCTGAATACTTGACACAGTT+TGG 0.366087 4_3:+10340186 Msa0629500:CDS
GAGTGAGATGCTAGCATTTG+AGG 0.367845 4_3:+10341315 Msa0629500:CDS
ATTAGATGTTTCAGTTTATG+AGG 0.372304 4_3:+10341773 Msa0629500:three_prime_UTR
TTCTTCTTGTGTTGTGGTGG+GGG 0.383441 4_3:-10340011 None:intergenic
AAGTTACAAATTCAGTGGTT+AGG 0.396419 4_3:-10342050 None:intergenic
TGAAATACAGCCGATAATAT+TGG 0.398165 4_3:+10341874 Msa0629500:three_prime_UTR
ATAGAAGGAAGGGTGAAATA+TGG 0.405812 4_3:-10339950 None:intergenic
AACTTAGTCACCAATATTAT+CGG 0.415936 4_3:-10341884 None:intergenic
CAAGTTGAGCTAGTAGCTCT+TGG 0.422521 4_3:-10340113 None:intergenic
ACTTCTTCTTGTGTTGTGGT+GGG 0.425298 4_3:-10340013 None:intergenic
TCTCATAAATGAGCACTTGA+TGG 0.430354 4_3:-10341990 None:intergenic
CTTCTTCTTGTGTTGTGGTG+GGG 0.430419 4_3:-10340012 None:intergenic
AGTATTATCAGGTTCATCAT+TGG 0.435688 4_3:-10340064 None:intergenic
AATGGAGATTGAAGGACAAA+TGG 0.440803 4_3:+10341387 Msa0629500:CDS
GGACTATTCTTTAAGAACTT+AGG 0.444508 4_3:+10341427 Msa0629500:CDS
CCAATTTGTAAGCACTCACT+TGG 0.447191 4_3:-10341820 None:intergenic
AACTTCTTCTTGTGTTGTGG+TGG 0.447722 4_3:-10340014 None:intergenic
CATCATTAAGTAGTACTGAT+TGG 0.456180 4_3:+10341611 Msa0629500:CDS
TGGCTTTGAACATCACCTCC+AGG 0.458846 4_3:-10340093 None:intergenic
AAAGCTGAAATTGATAAGAT+TGG 0.462568 4_3:+10340219 Msa0629500:CDS
TTTAAGAACTTAGGACAGAA+AGG 0.478730 4_3:+10341436 Msa0629500:CDS
ATAGAAGAAGGATAGAAGGA+AGG 0.483138 4_3:-10339961 None:intergenic
ATCAGGTTCATCATTGGAGT+TGG 0.486180 4_3:-10340058 None:intergenic
CAGAACTTCTTCTTGTGTTG+TGG 0.493087 4_3:-10340017 None:intergenic
ATTTGAGGAATCAAATGAAC+TGG 0.493199 4_3:+10341330 Msa0629500:CDS
GGAAAGTGAAAGCAAAGTAA+TGG 0.500197 4_3:+10341369 Msa0629500:CDS
TAGAAGAAGGATAGAAGGAA+GGG 0.500325 4_3:-10339960 None:intergenic
CAATTTGTAAGCACTCACTT+GGG 0.502986 4_3:-10341819 None:intergenic
TGAAGATGCTCTTAAAGGAT+TGG 0.511035 4_3:+10340242 Msa0629500:CDS
ACTGGACAGAGTAGAGTTTG+AGG 0.523524 4_3:+10341348 Msa0629500:CDS
ATGGAAGTTGACAGAAATGA+AGG 0.525154 4_3:+10341406 Msa0629500:CDS
CTCATAAATGAGCACTTGAT+GGG 0.539231 4_3:-10341989 None:intergenic
GTGGTGGTGTTGATAGAAGA+AGG 0.543371 4_3:-10339973 None:intergenic
GAAAGATGTAACAACAAATG+AGG 0.557127 4_3:+10341504 Msa0629500:CDS
TTAGATGTTTCAGTTTATGA+GGG 0.559230 4_3:+10341774 Msa0629500:three_prime_UTR
AGCAAAGTAATGGAGATTGA+AGG 0.564863 4_3:+10341379 Msa0629500:CDS
AATATAAGTTACAAATTCAG+TGG 0.566872 4_3:-10342055 None:intergenic
AAAGATGATGAACAATGAAG+AGG 0.571685 4_3:+10341715 Msa0629500:exon
CCTGATAATACTTCACAACC+TGG 0.574595 4_3:+10340075 Msa0629500:CDS
GGGGTGCAGAGTAGTAAAAG+TGG 0.581339 4_3:-10339992 None:intergenic
AGTTCTTGGAGCTATTCTTG+TGG 0.591041 4_3:+10341645 Msa0629500:CDS
AAACACGAGGATAAAACTAT+GGG 0.595359 4_3:+10339877 Msa0629500:exon
AATTTGTAAGCACTCACTTG+GGG 0.602776 4_3:-10341818 None:intergenic
ACTATGGGAGCTGACATACA+TGG 0.635758 4_3:+10339892 Msa0629500:exon
TGCAATTCAGCAGTATAACA+TGG 0.647077 4_3:-10341908 None:intergenic
GTGCAGAGTAGTAAAAGTGG+TGG 0.674073 4_3:-10339989 None:intergenic
GATAATACTTCACAACCTGG+AGG 0.739356 4_3:+10340078 Msa0629500:CDS
ATAATGTACAAAGAAACACG+AGG 0.838573 4_3:+10339864 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ACATATCTTATAAAAAAATA+TGG - chr4_3:10341055-10341074 None:intergenic 10.0%
!! ACATATCTTATAAAAAAATA+TGG - chr4_3:10341055-10341074 None:intergenic 10.0%
!!! ATACTTTAAAAACTGAATTA+TGG - chr4_3:10340392-10340411 None:intergenic 15.0%
!!! ATACTTTAAAAACTGAATTA+TGG - chr4_3:10340392-10340411 None:intergenic 15.0%
!! AATCACAAATGAATGTAAAA+GGG - chr4_3:10341273-10341292 None:intergenic 20.0%
!! TAATCACAAATGAATGTAAA+AGG - chr4_3:10341274-10341293 None:intergenic 20.0%
!!! CATCTTTTTTATTTCTTCTT+TGG - chr4_3:10341485-10341504 None:intergenic 20.0%
!! AATGTTTACTTATTCTTCAT+TGG + chr4_3:10341550-10341569 Msa0629500:CDS 20.0%
!!! TCAAATCATTGATTTTGTAA+CGG + chr4_3:10342018-10342037 Msa0629500:three_prime_UTR 20.0%
!! AATATAAGTTACAAATTCAG+TGG - chr4_3:10342058-10342077 None:intergenic 20.0%
!! CTGAATTTGTAACTTATATT+TGG + chr4_3:10342058-10342077 Msa0629500:three_prime_UTR 20.0%
!! AATCACAAATGAATGTAAAA+GGG - chr4_3:10341273-10341292 None:intergenic 20.0%
!! TAATCACAAATGAATGTAAA+AGG - chr4_3:10341274-10341293 None:intergenic 20.0%
!!! CATCTTTTTTATTTCTTCTT+TGG - chr4_3:10341485-10341504 None:intergenic 20.0%
!! AATGTTTACTTATTCTTCAT+TGG + chr4_3:10341550-10341569 Msa0629500:CDS 20.0%
!!! TCAAATCATTGATTTTGTAA+CGG + chr4_3:10342018-10342037 Msa0629500:three_prime_UTR 20.0%
!! AATATAAGTTACAAATTCAG+TGG - chr4_3:10342058-10342077 None:intergenic 20.0%
!! CTGAATTTGTAACTTATATT+TGG + chr4_3:10342058-10342077 Msa0629500:three_prime_UTR 20.0%
! AAAGCTGAAATTGATAAGAT+TGG + chr4_3:10340219-10340238 Msa0629500:CDS 25.0%
! AAAACTGAATTATGGTTTAC+TGG - chr4_3:10340384-10340403 None:intergenic 25.0%
! TTAAAGTATAGTTCCTACTA+GGG - chr4_3:10340493-10340512 None:intergenic 25.0%
!! TTTAAAGTATAGTTCCTACT+AGG - chr4_3:10340494-10340513 None:intergenic 25.0%
! TACTTTGTACACTTATCATA+TGG + chr4_3:10341166-10341185 Msa0629500:intron 25.0%
!!! TTCATTGGTCTTTTTACATA+TGG + chr4_3:10341565-10341584 Msa0629500:CDS 25.0%
!! CTTTTTACATATGGAATAGT+TGG + chr4_3:10341574-10341593 Msa0629500:CDS 25.0%
! ATTAGATGTTTCAGTTTATG+AGG + chr4_3:10341773-10341792 Msa0629500:three_prime_UTR 25.0%
! TTAGATGTTTCAGTTTATGA+GGG + chr4_3:10341774-10341793 Msa0629500:three_prime_UTR 25.0%
! AACTTAGTCACCAATATTAT+CGG - chr4_3:10341887-10341906 None:intergenic 25.0%
! AAAGCTGAAATTGATAAGAT+TGG + chr4_3:10340219-10340238 Msa0629500:CDS 25.0%
! AAAACTGAATTATGGTTTAC+TGG - chr4_3:10340384-10340403 None:intergenic 25.0%
! TTAAAGTATAGTTCCTACTA+GGG - chr4_3:10340493-10340512 None:intergenic 25.0%
!! TTTAAAGTATAGTTCCTACT+AGG - chr4_3:10340494-10340513 None:intergenic 25.0%
! TACTTTGTACACTTATCATA+TGG + chr4_3:10341166-10341185 Msa0629500:intron 25.0%
!!! TTCATTGGTCTTTTTACATA+TGG + chr4_3:10341565-10341584 Msa0629500:CDS 25.0%
!! CTTTTTACATATGGAATAGT+TGG + chr4_3:10341574-10341593 Msa0629500:CDS 25.0%
! ATTAGATGTTTCAGTTTATG+AGG + chr4_3:10341773-10341792 Msa0629500:three_prime_UTR 25.0%
! TTAGATGTTTCAGTTTATGA+GGG + chr4_3:10341774-10341793 Msa0629500:three_prime_UTR 25.0%
! AACTTAGTCACCAATATTAT+CGG - chr4_3:10341887-10341906 None:intergenic 25.0%
AAACACGAGGATAAAACTAT+GGG + chr4_3:10339877-10339896 Msa0629500:exon 30.0%
AGTATTATCAGGTTCATCAT+TGG - chr4_3:10340067-10340086 None:intergenic 30.0%
TCATTATGTTAATCCCTAGT+AGG + chr4_3:10340477-10340496 Msa0629500:intron 30.0%
AGATAAAATGAGAGAGAGAT+TGG + chr4_3:10340535-10340554 Msa0629500:intron 30.0%
ATTGGACTATAATGTTAGTC+AGG + chr4_3:10340553-10340572 Msa0629500:intron 30.0%
AAACTGTAGTTTGAATCCTA+GGG + chr4_3:10340609-10340628 Msa0629500:intron 30.0%
!!! TTTGTTTTGTCAAGATGCTA+GGG - chr4_3:10340808-10340827 None:intergenic 30.0%
ATTTGAGGAATCAAATGAAC+TGG + chr4_3:10341330-10341349 Msa0629500:CDS 30.0%
! GGACTATTCTTTAAGAACTT+AGG + chr4_3:10341427-10341446 Msa0629500:CDS 30.0%
TTTAAGAACTTAGGACAGAA+AGG + chr4_3:10341436-10341455 Msa0629500:CDS 30.0%
! GCTTTTGCTTTATCAACATT+AGG - chr4_3:10341463-10341482 None:intergenic 30.0%
GAAAGATGTAACAACAAATG+AGG + chr4_3:10341504-10341523 Msa0629500:CDS 30.0%
GTAACAACAAATGAGGAAAA+TGG + chr4_3:10341511-10341530 Msa0629500:CDS 30.0%
AGGAAAATGGAAGAAAAACA+AGG + chr4_3:10341524-10341543 Msa0629500:CDS 30.0%
!! CATCATTAAGTAGTACTGAT+TGG + chr4_3:10341611-10341630 Msa0629500:CDS 30.0%
AAAGATGATGAACAATGAAG+AGG + chr4_3:10341715-10341734 Msa0629500:exon 30.0%
! ATATATCAAGCAGCTTTTCT+TGG + chr4_3:10341848-10341867 Msa0629500:three_prime_UTR 30.0%
! TATATCAAGCAGCTTTTCTT+GGG + chr4_3:10341849-10341868 Msa0629500:three_prime_UTR 30.0%
TGAAATACAGCCGATAATAT+TGG + chr4_3:10341874-10341893 Msa0629500:three_prime_UTR 30.0%
AAGTTACAAATTCAGTGGTT+AGG - chr4_3:10342053-10342072 None:intergenic 30.0%
AAACACGAGGATAAAACTAT+GGG + chr4_3:10339877-10339896 Msa0629500:exon 30.0%
AGTATTATCAGGTTCATCAT+TGG - chr4_3:10340067-10340086 None:intergenic 30.0%
TCATTATGTTAATCCCTAGT+AGG + chr4_3:10340477-10340496 Msa0629500:intron 30.0%
AGATAAAATGAGAGAGAGAT+TGG + chr4_3:10340535-10340554 Msa0629500:intron 30.0%
ATTGGACTATAATGTTAGTC+AGG + chr4_3:10340553-10340572 Msa0629500:intron 30.0%
AAACTGTAGTTTGAATCCTA+GGG + chr4_3:10340609-10340628 Msa0629500:intron 30.0%
!!! TTTGTTTTGTCAAGATGCTA+GGG - chr4_3:10340808-10340827 None:intergenic 30.0%
ATTTGAGGAATCAAATGAAC+TGG + chr4_3:10341330-10341349 Msa0629500:CDS 30.0%
! GGACTATTCTTTAAGAACTT+AGG + chr4_3:10341427-10341446 Msa0629500:CDS 30.0%
TTTAAGAACTTAGGACAGAA+AGG + chr4_3:10341436-10341455 Msa0629500:CDS 30.0%
! GCTTTTGCTTTATCAACATT+AGG - chr4_3:10341463-10341482 None:intergenic 30.0%
GAAAGATGTAACAACAAATG+AGG + chr4_3:10341504-10341523 Msa0629500:CDS 30.0%
GTAACAACAAATGAGGAAAA+TGG + chr4_3:10341511-10341530 Msa0629500:CDS 30.0%
AGGAAAATGGAAGAAAAACA+AGG + chr4_3:10341524-10341543 Msa0629500:CDS 30.0%
!! CATCATTAAGTAGTACTGAT+TGG + chr4_3:10341611-10341630 Msa0629500:CDS 30.0%
AAAGATGATGAACAATGAAG+AGG + chr4_3:10341715-10341734 Msa0629500:exon 30.0%
! ATATATCAAGCAGCTTTTCT+TGG + chr4_3:10341848-10341867 Msa0629500:three_prime_UTR 30.0%
! TATATCAAGCAGCTTTTCTT+GGG + chr4_3:10341849-10341868 Msa0629500:three_prime_UTR 30.0%
TGAAATACAGCCGATAATAT+TGG + chr4_3:10341874-10341893 Msa0629500:three_prime_UTR 30.0%
AAGTTACAAATTCAGTGGTT+AGG - chr4_3:10342053-10342072 None:intergenic 30.0%
GAAACACGAGGATAAAACTA+TGG + chr4_3:10339876-10339895 Msa0629500:exon 35.0%
ATAGAAGGAAGGGTGAAATA+TGG - chr4_3:10339953-10339972 None:intergenic 35.0%
TAGAAGAAGGATAGAAGGAA+GGG - chr4_3:10339963-10339982 None:intergenic 35.0%
ATAGAAGAAGGATAGAAGGA+AGG - chr4_3:10339964-10339983 None:intergenic 35.0%
! GTTGATAGAAGAAGGATAGA+AGG - chr4_3:10339968-10339987 None:intergenic 35.0%
GACAGAAAAAGTTCGTCTTA+CGG + chr4_3:10340146-10340165 Msa0629500:CDS 35.0%
! AGTTCGTCTTACGGATTATT+TGG + chr4_3:10340155-10340174 Msa0629500:CDS 35.0%
TCTGAATACTTGACACAGTT+TGG + chr4_3:10340186-10340205 Msa0629500:CDS 35.0%
ATTGGTGAAGATGCTCTTAA+AGG + chr4_3:10340237-10340256 Msa0629500:CDS 35.0%
TGAAGATGCTCTTAAAGGAT+TGG + chr4_3:10340242-10340261 Msa0629500:CDS 35.0%
GAAACTGTAGTTTGAATCCT+AGG + chr4_3:10340608-10340627 Msa0629500:intron 35.0%
AACTGTAGTTTGAATCCTAG+GGG + chr4_3:10340610-10340629 Msa0629500:intron 35.0%
! TTGAGAATTAGTCTCGTAGT+CGG + chr4_3:10340687-10340706 Msa0629500:intron 35.0%
!!! CTTTGTTTTGTCAAGATGCT+AGG - chr4_3:10340809-10340828 None:intergenic 35.0%
!! CTCAAAGTCTCAATTTTGGT+GGG - chr4_3:10340908-10340927 None:intergenic 35.0%
! TCTCCTCAAAGTCTCAATTT+TGG - chr4_3:10340912-10340931 None:intergenic 35.0%
!! GCATAAGTACTGCTTTTAAC+AGG - chr4_3:10341219-10341238 None:intergenic 35.0%
GGAAAGTGAAAGCAAAGTAA+TGG + chr4_3:10341369-10341388 Msa0629500:CDS 35.0%
! AGCAAAGTAATGGAGATTGA+AGG + chr4_3:10341379-10341398 Msa0629500:CDS 35.0%
AATGGAGATTGAAGGACAAA+TGG + chr4_3:10341387-10341406 Msa0629500:CDS 35.0%
ATGGAAGTTGACAGAAATGA+AGG + chr4_3:10341406-10341425 Msa0629500:CDS 35.0%
AATTTGTAAGCACTCACTTG+GGG - chr4_3:10341821-10341840 None:intergenic 35.0%
CAATTTGTAAGCACTCACTT+GGG - chr4_3:10341822-10341841 None:intergenic 35.0%
TGCAATTCAGCAGTATAACA+TGG - chr4_3:10341911-10341930 None:intergenic 35.0%
CTCATAAATGAGCACTTGAT+GGG - chr4_3:10341992-10342011 None:intergenic 35.0%
TCTCATAAATGAGCACTTGA+TGG - chr4_3:10341993-10342012 None:intergenic 35.0%
GAAACACGAGGATAAAACTA+TGG + chr4_3:10339876-10339895 Msa0629500:exon 35.0%
ATAGAAGGAAGGGTGAAATA+TGG - chr4_3:10339953-10339972 None:intergenic 35.0%
TAGAAGAAGGATAGAAGGAA+GGG - chr4_3:10339963-10339982 None:intergenic 35.0%
ATAGAAGAAGGATAGAAGGA+AGG - chr4_3:10339964-10339983 None:intergenic 35.0%
! GTTGATAGAAGAAGGATAGA+AGG - chr4_3:10339968-10339987 None:intergenic 35.0%
GACAGAAAAAGTTCGTCTTA+CGG + chr4_3:10340146-10340165 Msa0629500:CDS 35.0%
! AGTTCGTCTTACGGATTATT+TGG + chr4_3:10340155-10340174 Msa0629500:CDS 35.0%
TCTGAATACTTGACACAGTT+TGG + chr4_3:10340186-10340205 Msa0629500:CDS 35.0%
ATTGGTGAAGATGCTCTTAA+AGG + chr4_3:10340237-10340256 Msa0629500:CDS 35.0%
TGAAGATGCTCTTAAAGGAT+TGG + chr4_3:10340242-10340261 Msa0629500:CDS 35.0%
GAAACTGTAGTTTGAATCCT+AGG + chr4_3:10340608-10340627 Msa0629500:intron 35.0%
AACTGTAGTTTGAATCCTAG+GGG + chr4_3:10340610-10340629 Msa0629500:intron 35.0%
! TTGAGAATTAGTCTCGTAGT+CGG + chr4_3:10340687-10340706 Msa0629500:intron 35.0%
!!! CTTTGTTTTGTCAAGATGCT+AGG - chr4_3:10340809-10340828 None:intergenic 35.0%
!! CTCAAAGTCTCAATTTTGGT+GGG - chr4_3:10340908-10340927 None:intergenic 35.0%
! TCTCCTCAAAGTCTCAATTT+TGG - chr4_3:10340912-10340931 None:intergenic 35.0%
!! GCATAAGTACTGCTTTTAAC+AGG - chr4_3:10341219-10341238 None:intergenic 35.0%
GGAAAGTGAAAGCAAAGTAA+TGG + chr4_3:10341369-10341388 Msa0629500:CDS 35.0%
! AGCAAAGTAATGGAGATTGA+AGG + chr4_3:10341379-10341398 Msa0629500:CDS 35.0%
AATGGAGATTGAAGGACAAA+TGG + chr4_3:10341387-10341406 Msa0629500:CDS 35.0%
ATGGAAGTTGACAGAAATGA+AGG + chr4_3:10341406-10341425 Msa0629500:CDS 35.0%
AATTTGTAAGCACTCACTTG+GGG - chr4_3:10341821-10341840 None:intergenic 35.0%
CAATTTGTAAGCACTCACTT+GGG - chr4_3:10341822-10341841 None:intergenic 35.0%
TGCAATTCAGCAGTATAACA+TGG - chr4_3:10341911-10341930 None:intergenic 35.0%
CTCATAAATGAGCACTTGAT+GGG - chr4_3:10341992-10342011 None:intergenic 35.0%
TCTCATAAATGAGCACTTGA+TGG - chr4_3:10341993-10342012 None:intergenic 35.0%
ACTTCTTCTTGTGTTGTGGT+GGG - chr4_3:10340016-10340035 None:intergenic 40.0%
AACTTCTTCTTGTGTTGTGG+TGG - chr4_3:10340017-10340036 None:intergenic 40.0%
CAGAACTTCTTCTTGTGTTG+TGG - chr4_3:10340020-10340039 None:intergenic 40.0%
ATCAGGTTCATCATTGGAGT+TGG - chr4_3:10340061-10340080 None:intergenic 40.0%
! CCAGGTTGTGAAGTATTATC+AGG - chr4_3:10340078-10340097 None:intergenic 40.0%
CCTGATAATACTTCACAACC+TGG + chr4_3:10340075-10340094 Msa0629500:CDS 40.0%
GATAATACTTCACAACCTGG+AGG + chr4_3:10340078-10340097 Msa0629500:CDS 40.0%
AGCTAGCTAGAATCTATGCA+TGG - chr4_3:10340331-10340350 None:intergenic 40.0%
GGACTATAATGTTAGTCAGG+TGG + chr4_3:10340556-10340575 Msa0629500:intron 40.0%
AGTTTCTCAGATACTCCTAC+GGG - chr4_3:10340594-10340613 None:intergenic 40.0%
CAGTTTCTCAGATACTCCTA+CGG - chr4_3:10340595-10340614 None:intergenic 40.0%
CTTTCGTTCTCAACCTTCAT+AGG - chr4_3:10340641-10340660 None:intergenic 40.0%
CTATGAAGGTTGAGAACGAA+AGG + chr4_3:10340639-10340658 Msa0629500:intron 40.0%
GATGCTAGGGACTAATACAA+AGG - chr4_3:10340795-10340814 None:intergenic 40.0%
! CCTCAAAGTCTCAATTTTGG+TGG - chr4_3:10340909-10340928 None:intergenic 40.0%
CCACCAAAATTGAGACTTTG+AGG + chr4_3:10340906-10340925 Msa0629500:intron 40.0%
TGGAAGAAAGTTGCAGTTCT+TGG + chr4_3:10341631-10341650 Msa0629500:CDS 40.0%
AGTTCTTGGAGCTATTCTTG+TGG + chr4_3:10341645-10341664 Msa0629500:CDS 40.0%
CCAATTTGTAAGCACTCACT+TGG - chr4_3:10341823-10341842 None:intergenic 40.0%
CCAAGTGAGTGCTTACAAAT+TGG + chr4_3:10341820-10341839 Msa0629500:three_prime_UTR 40.0%
ACTTCTTCTTGTGTTGTGGT+GGG - chr4_3:10340016-10340035 None:intergenic 40.0%
AACTTCTTCTTGTGTTGTGG+TGG - chr4_3:10340017-10340036 None:intergenic 40.0%
CAGAACTTCTTCTTGTGTTG+TGG - chr4_3:10340020-10340039 None:intergenic 40.0%
ATCAGGTTCATCATTGGAGT+TGG - chr4_3:10340061-10340080 None:intergenic 40.0%
! CCAGGTTGTGAAGTATTATC+AGG - chr4_3:10340078-10340097 None:intergenic 40.0%
CCTGATAATACTTCACAACC+TGG + chr4_3:10340075-10340094 Msa0629500:CDS 40.0%
GATAATACTTCACAACCTGG+AGG + chr4_3:10340078-10340097 Msa0629500:CDS 40.0%
AGCTAGCTAGAATCTATGCA+TGG - chr4_3:10340331-10340350 None:intergenic 40.0%
GGACTATAATGTTAGTCAGG+TGG + chr4_3:10340556-10340575 Msa0629500:intron 40.0%
AGTTTCTCAGATACTCCTAC+GGG - chr4_3:10340594-10340613 None:intergenic 40.0%
CAGTTTCTCAGATACTCCTA+CGG - chr4_3:10340595-10340614 None:intergenic 40.0%
CTTTCGTTCTCAACCTTCAT+AGG - chr4_3:10340641-10340660 None:intergenic 40.0%
CTATGAAGGTTGAGAACGAA+AGG + chr4_3:10340639-10340658 Msa0629500:intron 40.0%
GATGCTAGGGACTAATACAA+AGG - chr4_3:10340795-10340814 None:intergenic 40.0%
! CCTCAAAGTCTCAATTTTGG+TGG - chr4_3:10340909-10340928 None:intergenic 40.0%
CCACCAAAATTGAGACTTTG+AGG + chr4_3:10340906-10340925 Msa0629500:intron 40.0%
TGGAAGAAAGTTGCAGTTCT+TGG + chr4_3:10341631-10341650 Msa0629500:CDS 40.0%
AGTTCTTGGAGCTATTCTTG+TGG + chr4_3:10341645-10341664 Msa0629500:CDS 40.0%
CCAATTTGTAAGCACTCACT+TGG - chr4_3:10341823-10341842 None:intergenic 40.0%
CCAAGTGAGTGCTTACAAAT+TGG + chr4_3:10341820-10341839 Msa0629500:three_prime_UTR 40.0%
ACTATGGGAGCTGACATACA+TGG + chr4_3:10339892-10339911 Msa0629500:exon 45.0%
!! GTGGTGGTGTTGATAGAAGA+AGG - chr4_3:10339976-10339995 None:intergenic 45.0%
GTGCAGAGTAGTAAAAGTGG+TGG - chr4_3:10339992-10340011 None:intergenic 45.0%
TTCTTCTTGTGTTGTGGTGG+GGG - chr4_3:10340014-10340033 None:intergenic 45.0%
CTTCTTCTTGTGTTGTGGTG+GGG - chr4_3:10340015-10340034 None:intergenic 45.0%
! CAAGTTGAGCTAGTAGCTCT+TGG - chr4_3:10340116-10340135 None:intergenic 45.0%
GTTTCTCAGATACTCCTACG+GGG - chr4_3:10340593-10340612 None:intergenic 45.0%
GGTCCAAATGACTGAAGTAG+CGG + chr4_3:10340708-10340727 Msa0629500:intron 45.0%
GTCCAAATGACTGAAGTAGC+GGG + chr4_3:10340709-10340728 Msa0629500:intron 45.0%
TCCAAATGACTGAAGTAGCG+GGG + chr4_3:10340710-10340729 Msa0629500:intron 45.0%
GAGTGAGATGCTAGCATTTG+AGG + chr4_3:10341315-10341334 Msa0629500:CDS 45.0%
ACTGGACAGAGTAGAGTTTG+AGG + chr4_3:10341348-10341367 Msa0629500:CDS 45.0%
ACTATGGGAGCTGACATACA+TGG + chr4_3:10339892-10339911 Msa0629500:exon 45.0%
!! GTGGTGGTGTTGATAGAAGA+AGG - chr4_3:10339976-10339995 None:intergenic 45.0%
GTGCAGAGTAGTAAAAGTGG+TGG - chr4_3:10339992-10340011 None:intergenic 45.0%
TTCTTCTTGTGTTGTGGTGG+GGG - chr4_3:10340014-10340033 None:intergenic 45.0%
CTTCTTCTTGTGTTGTGGTG+GGG - chr4_3:10340015-10340034 None:intergenic 45.0%
! CAAGTTGAGCTAGTAGCTCT+TGG - chr4_3:10340116-10340135 None:intergenic 45.0%
GTTTCTCAGATACTCCTACG+GGG - chr4_3:10340593-10340612 None:intergenic 45.0%
GGTCCAAATGACTGAAGTAG+CGG + chr4_3:10340708-10340727 Msa0629500:intron 45.0%
GTCCAAATGACTGAAGTAGC+GGG + chr4_3:10340709-10340728 Msa0629500:intron 45.0%
TCCAAATGACTGAAGTAGCG+GGG + chr4_3:10340710-10340729 Msa0629500:intron 45.0%
GAGTGAGATGCTAGCATTTG+AGG + chr4_3:10341315-10341334 Msa0629500:CDS 45.0%
ACTGGACAGAGTAGAGTTTG+AGG + chr4_3:10341348-10341367 Msa0629500:CDS 45.0%
GGGGTGCAGAGTAGTAAAAG+TGG - chr4_3:10339995-10340014 None:intergenic 50.0%
!! TGGCTTTGAACATCACCTCC+AGG - chr4_3:10340096-10340115 None:intergenic 50.0%
TGGAAGCAATTTGACCCCGT+AGG + chr4_3:10340576-10340595 Msa0629500:intron 50.0%
CCTTCATAGGTTACTCCCCT+AGG - chr4_3:10340628-10340647 None:intergenic 50.0%
CCTAGGGGAGTAACCTATGA+AGG + chr4_3:10340625-10340644 Msa0629500:intron 50.0%
TCCCCGCTACTTCAGTCATT+TGG - chr4_3:10340714-10340733 None:intergenic 50.0%
!! ATGCCATGGTGGACTCATTG+TGG + chr4_3:10340733-10340752 Msa0629500:intron 50.0%
! TGGACTCATTGTGGTGCCAA+AGG + chr4_3:10340742-10340761 Msa0629500:intron 50.0%
! GGTGCCAAAGGCTCTAATCA+CGG + chr4_3:10340754-10340773 Msa0629500:intron 50.0%
CTCACCGTGATTAGAGCCTT+TGG - chr4_3:10340761-10340780 None:intergenic 50.0%
GGGGTGCAGAGTAGTAAAAG+TGG - chr4_3:10339995-10340014 None:intergenic 50.0%
!! TGGCTTTGAACATCACCTCC+AGG - chr4_3:10340096-10340115 None:intergenic 50.0%
TGGAAGCAATTTGACCCCGT+AGG + chr4_3:10340576-10340595 Msa0629500:intron 50.0%
CCTTCATAGGTTACTCCCCT+AGG - chr4_3:10340628-10340647 None:intergenic 50.0%
CCTAGGGGAGTAACCTATGA+AGG + chr4_3:10340625-10340644 Msa0629500:intron 50.0%
TCCCCGCTACTTCAGTCATT+TGG - chr4_3:10340714-10340733 None:intergenic 50.0%
!! ATGCCATGGTGGACTCATTG+TGG + chr4_3:10340733-10340752 Msa0629500:intron 50.0%
! TGGACTCATTGTGGTGCCAA+AGG + chr4_3:10340742-10340761 Msa0629500:intron 50.0%
! GGTGCCAAAGGCTCTAATCA+CGG + chr4_3:10340754-10340773 Msa0629500:intron 50.0%
CTCACCGTGATTAGAGCCTT+TGG - chr4_3:10340761-10340780 None:intergenic 50.0%
GCACCACAATGAGTCCACCA+TGG - chr4_3:10340739-10340758 None:intergenic 55.0%
GCACCACAATGAGTCCACCA+TGG - chr4_3:10340739-10340758 None:intergenic 55.0%
! CTGAAGTAGCGGGGATGCCA+TGG + chr4_3:10340719-10340738 Msa0629500:intron 60.0%
! AAGTAGCGGGGATGCCATGG+TGG + chr4_3:10340722-10340741 Msa0629500:intron 60.0%
! CTGAAGTAGCGGGGATGCCA+TGG + chr4_3:10340719-10340738 Msa0629500:intron 60.0%
! AAGTAGCGGGGATGCCATGG+TGG + chr4_3:10340722-10340741 Msa0629500:intron 60.0%
Chromosome Type Strat End Strand Name
chr4_3 gene 10339874 10342106 10339874 ID=Msa0629500;Name=Msa0629500
chr4_3 mRNA 10339874 10342106 10339874 ID=Msa0629500-mRNA-1;Parent=Msa0629500;Name=Msa0629500-mRNA-1;_AED=0.01;_eAED=0.01;_QI=21|1|1|1|1|1|2|374|273
chr4_3 exon 10339874 10340281 10339874 ID=Msa0629500-mRNA-1:exon:3143;Parent=Msa0629500-mRNA-1
chr4_3 exon 10341298 10342106 10341298 ID=Msa0629500-mRNA-1:exon:3144;Parent=Msa0629500-mRNA-1
chr4_3 five_prime_UTR 10339874 10339894 10339874 ID=Msa0629500-mRNA-1:five_prime_utr;Parent=Msa0629500-mRNA-1
chr4_3 CDS 10339895 10340281 10339895 ID=Msa0629500-mRNA-1:cds;Parent=Msa0629500-mRNA-1
chr4_3 CDS 10341298 10341732 10341298 ID=Msa0629500-mRNA-1:cds;Parent=Msa0629500-mRNA-1
chr4_3 three_prime_UTR 10341733 10342106 10341733 ID=Msa0629500-mRNA-1:three_prime_utr;Parent=Msa0629500-mRNA-1
Gene Sequence

>Msa0629500

ATGGGAGCTGACATACATGGCATCACTTTAGTTGACAAGATGATTGCTCTCAAAGCCATATTTCACCCTTCCTTCTATCCTTCTTCTATCAACACCACCACTTTTACTACTCTGCACCCCCACCACAACACAAGAAGAAGTTCTGTTTTTCTCTGTCTTTGTACCAACTCCAATGATGAACCTGATAATACTTCACAACCTGGAGGTGATGTTCAAAGCCAAGAGCTACTAGCTCAACTTGCAATGCTTGAGACAGAAAAAGTTCGTCTTACGGATTATTTGGATGAAAGATCTGAATACTTGACACAGTTTGGTGAAGAAGCTAAAGCTGAAATTGATAAGATTGGTGAAGATGCTCTTAAAGGATTGGATGAAGCTAGTGATAGAATAACAGCAAAAATAGAGAGTGAGATGCTAGCATTTGAGGAATCAAATGAACTGGACAGAGTAGAGTTTGAGGAAAGTGAAAGCAAAGTAATGGAGATTGAAGGACAAATGGAAGTTGACAGAAATGAAGGACTATTCTTTAAGAACTTAGGACAGAAAGGACCTAATGTTGATAAAGCAAAAGCCAAAGAAGAAATAAAAAAGATGAAAGATGTAACAACAAATGAGGAAAATGGAAGAAAAACAAGGAAAAATGTTTACTTATTCTTCATTGGTCTTTTTACATATGGAATAGTTGGTTCTATTAATGTCTCATCATTAAGTAGTACTGATTGGAAGAAAGTTGCAGTTCTTGGAGCTATTCTTGTGGCTTTGTTTTCTCAGTTCATTTATGAACAAAATAAAGACAATAATCAGAAAGATGATGAACAATGA

Protein sequence

>Msa0629500

MGADIHGITLVDKMIALKAIFHPSFYPSSINTTTFTTLHPHHNTRRSSVFLCLCTNSNDEPDNTSQPGGDVQSQELLAQLAMLETEKVRLTDYLDERSEYLTQFGEEAKAEIDKIGEDALKGLDEASDRITAKIESEMLAFEESNELDRVEFEESESKVMEIEGQMEVDRNEGLFFKNLGQKGPNVDKAKAKEEIKKMKDVTTNEENGRKTRKNVYLFFIGLFTYGIVGSINVSSLSSTDWKKVAVLGAILVALFSQFIYEQNKDNNQKDDEQ*