AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0130760


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0130760 MtrunA17_Chr1g0199181 95.098 204 6 3 1 200 2 205 8.74e-140 389
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0130760 AT3G10405.1 63.576 151 55 0 53 203 59 209 1.55e-64 199

Find 58 sgRNAs with CRISPR-Local

Find 163 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCACGAATATGTTTCTTATC+TGG 0.245819 1_3:+61173045 Msa0130760:CDS
CTAGGATCCTCAACATTTAT+AGG 0.279112 1_3:-61171137 None:intergenic
GTTATTATTAGAGTTGAAAA+TGG 0.281416 1_3:-61170771 None:intergenic
ATTGATGTTATACATAAATC+TGG 0.305197 1_3:+61173710 Msa0130760:three_prime_UTR
CATGCTTACGCGTTCGCTTT+GGG 0.314036 1_3:+61172545 Msa0130760:CDS
GAATCTTCAACTAACTCATT+AGG 0.348263 1_3:-61171104 None:intergenic
GTTGATGCTTTCCCTGAAAC+TGG 0.375894 1_3:+61173096 Msa0130760:CDS
AAGACTCATCCATTCTTTCC+AGG 0.377891 1_3:-61173663 None:intergenic
ACTCTAATAATAACCTCAAC+TGG 0.380039 1_3:+61170780 Msa0130760:CDS
ACATGCTTACGCGTTCGCTT+TGG 0.381141 1_3:+61172544 Msa0130760:CDS
TCTTCTATCAACTCATATAG+TGG 0.394763 1_3:-61173356 None:intergenic
TTTGCAGGCCTTGTTGTTGT+TGG 0.403165 1_3:+61171427 Msa0130760:intron
TGGAACATGAAGGAGGCATT+CGG 0.409372 1_3:-61170709 None:intergenic
TTGCAGGCCTTGTTGTTGTT+GGG 0.410312 1_3:+61171428 Msa0130760:intron
GGAAGCAAAATGATGTCATT+TGG 0.414656 1_3:+61170644 Msa0130760:exon
TAGTGGTTTGTTAGCACTGT+TGG 0.421898 1_3:-61173339 None:intergenic
CTTACAGGTGGACCATATCT+AGG 0.443659 1_3:-61171155 None:intergenic
CCTACTGGACCTGGAAAGAA+TGG 0.443737 1_3:+61173654 Msa0130760:three_prime_UTR
TTGAAAATGGAACAAGAAGA+AGG 0.451288 1_3:-61170758 None:intergenic
GGAACATGAAGGAGGCATTC+GGG 0.451596 1_3:-61170708 None:intergenic
ATTTATGAGCATATGCCTAC+TGG 0.466485 1_3:+61173639 Msa0130760:three_prime_UTR
AGTGGTTTGTTAGCACTGTT+GGG 0.472960 1_3:-61173338 None:intergenic
GAGCATATGCCTACTGGACC+TGG 0.490000 1_3:+61173645 Msa0130760:three_prime_UTR
AAACCTTCAGAGGATGCTCT+TGG 0.490604 1_3:-61170806 None:intergenic
CCAGATAAGAAACATATTCG+TGG 0.493847 1_3:-61173045 None:intergenic
CATTGAAACATGGGAAAACA+TGG 0.494004 1_3:-61170729 None:intergenic
AAAATGATGTCATTTGGCCT+TGG 0.495524 1_3:+61170650 Msa0130760:exon
ACTAAAACCAGCTGTGTTTG+CGG 0.501873 1_3:+61173307 Msa0130760:CDS
ATTTGTTCCTATAAATGTTG+AGG 0.506384 1_3:+61171130 Msa0130760:CDS
GAATCTCTACGAACTGCAGC+TGG 0.510882 1_3:+61170672 Msa0130760:CDS
AGTGAGCTCGTAGAATTCAC+TGG 0.515846 1_3:-61173519 None:intergenic
GCAAACGGATAAAAGAACTT+AGG 0.527966 1_3:+61170610 Msa0130760:five_prime_UTR
CGAACGCGTAAGCATGTCCT+TGG 0.539944 1_3:-61172538 None:intergenic
CAAATAAGACAAACCTTCAG+AGG 0.558257 1_3:-61170816 None:intergenic
AGAGAGTTTAGAAGAGGTCA+AGG 0.558283 1_3:+61172587 Msa0130760:CDS
TTGATGTTATACATAAATCT+GGG 0.564513 1_3:+61173711 Msa0130760:three_prime_UTR
AATGTTGAGGATCCTAGATA+TGG 0.565843 1_3:+61171143 Msa0130760:CDS
ACAAGAGCCGCAAACACAGC+TGG 0.566250 1_3:-61173314 None:intergenic
CCATTCTTTCCAGGTCCAGT+AGG 0.566931 1_3:-61173654 None:intergenic
ATGCTCTTGGAGTCCAGTTG+AGG 0.571918 1_3:-61170793 None:intergenic
TGCAGTTCGTAGAGATTCCA+AGG 0.572362 1_3:-61170667 None:intergenic
AGGAGAAGACATTGAAACAT+GGG 0.575410 1_3:-61170738 None:intergenic
TGTTTCTTATCTGGTTTAAG+CGG 0.583734 1_3:+61173054 Msa0130760:CDS
AGAACTTAGGAAAGTTGCAG+AGG 0.588397 1_3:+61170623 Msa0130760:five_prime_UTR
ACTCCAAGAGCATCCTCTGA+AGG 0.589756 1_3:+61170803 Msa0130760:CDS
TGAGTTGATAGAAGAAATCA+CGG 0.591951 1_3:+61173364 Msa0130760:CDS
ACATGAGTAGAAGAAGCAAA+CGG 0.592780 1_3:+61170595 Msa0130760:five_prime_UTR
CTTATCTGGTTTAAGCGGAG+AGG 0.593073 1_3:+61173059 Msa0130760:CDS
AAGGAGAAGACATTGAAACA+TGG 0.593929 1_3:-61170739 None:intergenic
AACACAAGAGAGTTTAGAAG+AGG 0.600712 1_3:+61172581 Msa0130760:CDS
TTCAAATCCCAACAACAACA+AGG 0.612190 1_3:-61171435 None:intergenic
GAATTCTACGAGCTCACTCG+CGG 0.620240 1_3:+61173524 Msa0130760:CDS
GTGAGCTCGTAGAATTCACT+GGG 0.623563 1_3:-61173518 None:intergenic
GTTAGAGGGTGAGTTCCTGA+AGG 0.632562 1_3:+61172013 Msa0130760:CDS
TGGGAAAACATGGAACATGA+AGG 0.642942 1_3:-61170719 None:intergenic
GAAAACATGGAACATGAAGG+AGG 0.688873 1_3:-61170716 None:intergenic
GTAGGTCATCTATTGTACCA+AGG 0.708999 1_3:+61172521 Msa0130760:intron
GAGTTGATAGAAGAAATCAC+GGG 0.709286 1_3:+61173365 Msa0130760:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTTTCATCAATTTATTT+TGG - chr1_3:61172468-61172487 None:intergenic 10.0%
!! ATTTCTAAATGATTTGATTA+AGG - chr1_3:61171574-61171593 None:intergenic 15.0%
!!! TTGAAATTTTTTACACTATA+AGG + chr1_3:61171754-61171773 Msa0130760:intron 15.0%
!! GTACTAACAAATATATTAAT+TGG + chr1_3:61172649-61172668 Msa0130760:intron 15.0%
!!! GTTTTCTTATATCAAATTTA+TGG + chr1_3:61172793-61172812 Msa0130760:intron 15.0%
!! GTTATTATTAGAGTTGAAAA+TGG - chr1_3:61170774-61170793 None:intergenic 20.0%
!! TTAAACTATTTATCCAAACA+TGG + chr1_3:61170989-61171008 Msa0130760:intron 20.0%
!! ATCTTTATAAAGAAATGTTG+TGG + chr1_3:61171512-61171531 Msa0130760:intron 20.0%
!! GCTTATAGTAAATTACAAAA+TGG + chr1_3:61171842-61171861 Msa0130760:intron 20.0%
!! GTAAATTACAAAATGGATAT+AGG + chr1_3:61171849-61171868 Msa0130760:intron 20.0%
!! CAAAAAAATTTCCACTTTAA+CGG + chr1_3:61172170-61172189 Msa0130760:intron 20.0%
!!! TTTCGTTGTTTTTTTAAATG+CGG - chr1_3:61172379-61172398 None:intergenic 20.0%
!!! ACTATTATACCTTCAAATTT+TGG - chr1_3:61172436-61172455 None:intergenic 20.0%
!!! AATGTGAATTTTTTTTATGC+AGG + chr1_3:61173284-61173303 Msa0130760:intron 20.0%
!! ATTGATGTTATACATAAATC+TGG + chr1_3:61173710-61173729 Msa0130760:three_prime_UTR 20.0%
!! TTGATGTTATACATAAATCT+GGG + chr1_3:61173711-61173730 Msa0130760:three_prime_UTR 20.0%
! ATTTGTTCCTATAAATGTTG+AGG + chr1_3:61171130-61171149 Msa0130760:CDS 25.0%
! CACAAAAAAGTAACTCAAAT+TGG - chr1_3:61171316-61171335 None:intergenic 25.0%
!!! TTTGAGTTACTTTTTTGTGA+AGG + chr1_3:61171317-61171336 Msa0130760:intron 25.0%
! ATGTTCAATCAATCTAACTT+AGG + chr1_3:61171341-61171360 Msa0130760:intron 25.0%
!! GTTGCTCTATCAATAATTTT+GGG - chr1_3:61171729-61171748 None:intergenic 25.0%
!! AGTTGCTCTATCAATAATTT+TGG - chr1_3:61171730-61171749 None:intergenic 25.0%
! ACATTTGGAAAATAATACAG+TGG - chr1_3:61171939-61171958 None:intergenic 25.0%
! AGATAAAATACGAACATGAA+AGG - chr1_3:61172060-61172079 None:intergenic 25.0%
!!! TTTTTGTTTATTCAGACTGT+TGG - chr1_3:61172156-61172175 None:intergenic 25.0%
! TGTAGCTTATTGCATTATTT+AGG - chr1_3:61172254-61172273 None:intergenic 25.0%
! GGTCATGATTAATTGATTAT+AGG + chr1_3:61172771-61172790 Msa0130760:intron 25.0%
!! TAAATGTTTCTAATGTTCCA+AGG + chr1_3:61172909-61172928 Msa0130760:intron 25.0%
! TCAATGTTAACAAACCAAAA+GGG - chr1_3:61173177-61173196 None:intergenic 25.0%
! TTCAATGTTAACAAACCAAA+AGG - chr1_3:61173178-61173197 None:intergenic 25.0%
! TCAATGTTTATCACTATCTT+TGG + chr1_3:61173425-61173444 Msa0130760:intron 25.0%
TTGAAAATGGAACAAGAAGA+AGG - chr1_3:61170761-61170780 None:intergenic 30.0%
ACTCTAATAATAACCTCAAC+TGG + chr1_3:61170780-61170799 Msa0130760:CDS 30.0%
GAGTGTATCTATCTATCATA+TGG + chr1_3:61170838-61170857 Msa0130760:intron 30.0%
CTATCTATCATATGGAAACA+TGG + chr1_3:61170846-61170865 Msa0130760:intron 30.0%
ACTATTTATCCAAACATGGA+TGG + chr1_3:61170993-61171012 Msa0130760:intron 30.0%
!!! TGTTATTTTGCTTATCATGC+AGG + chr1_3:61171077-61171096 Msa0130760:intron 30.0%
GAATCTTCAACTAACTCATT+AGG - chr1_3:61171107-61171126 None:intergenic 30.0%
AAAAACTAACCATGACTTAC+AGG - chr1_3:61171173-61171192 None:intergenic 30.0%
AGGTAAATGCATATAAAGTG+AGG - chr1_3:61171285-61171304 None:intergenic 30.0%
! TGAAGCAGATGAACATTTTA+AGG + chr1_3:61171454-61171473 Msa0130760:CDS 30.0%
GATTATCATATCCTATTGCA+TGG - chr1_3:61171495-61171514 None:intergenic 30.0%
CAATTAATCAGAGCAATGAT+TGG - chr1_3:61171688-61171707 None:intergenic 30.0%
ATGTTACAATTACAGCATGA+AGG + chr1_3:61171794-61171813 Msa0130760:intron 30.0%
!! ACAGTTTTTGAAAGAGTTAG+AGG + chr1_3:61171998-61172017 Msa0130760:CDS 30.0%
!! CAGTTTTTGAAAGAGTTAGA+GGG + chr1_3:61171999-61172018 Msa0130760:CDS 30.0%
! ATAAGATGTTTGTTACCTTC+AGG - chr1_3:61172031-61172050 None:intergenic 30.0%
! AGGATTTTACTCATTGATCT+TGG - chr1_3:61172088-61172107 None:intergenic 30.0%
AGTAAAATCCTATTCATAGC+TGG + chr1_3:61172097-61172116 Msa0130760:intron 30.0%
GTAAAATCCTATTCATAGCT+GGG + chr1_3:61172098-61172117 Msa0130760:intron 30.0%
!! TCAAATTTTGGTCACAGATT+GGG - chr1_3:61172424-61172443 None:intergenic 30.0%
!! TTCAAATTTTGGTCACAGAT+TGG - chr1_3:61172425-61172444 None:intergenic 30.0%
AATCTGTGACCAAAATTTGA+AGG + chr1_3:61172424-61172443 Msa0130760:intron 30.0%
ACAATGCAATGCAATATGTT+AGG - chr1_3:61172503-61172522 None:intergenic 30.0%
AACATATTGCATTGCATTGT+AGG + chr1_3:61172503-61172522 Msa0130760:intron 30.0%
ACTGCTGTCAAAAATTACAA+GGG - chr1_3:61172707-61172726 None:intergenic 30.0%
AACTGCTGTCAAAAATTACA+AGG - chr1_3:61172708-61172727 None:intergenic 30.0%
ATTTGCATGAATTGTTAAGC+AGG + chr1_3:61172747-61172766 Msa0130760:intron 30.0%
ATTGCTACAAAGTTCTTGAT+TGG - chr1_3:61172869-61172888 None:intergenic 30.0%
! TGTTTCTTATCTGGTTTAAG+CGG + chr1_3:61173054-61173073 Msa0130760:CDS 30.0%
AATCAACGTGTGAAACAATT+CGG - chr1_3:61173142-61173161 None:intergenic 30.0%
! TTTTATCAATCATGCCCTTT+TGG + chr1_3:61173160-61173179 Msa0130760:intron 30.0%
TCATTCATGCATAGAAAATG+TGG - chr1_3:61173227-61173246 None:intergenic 30.0%
TCTTCTATCAACTCATATAG+TGG - chr1_3:61173359-61173378 None:intergenic 30.0%
!! TGAGTTGATAGAAGAAATCA+CGG + chr1_3:61173364-61173383 Msa0130760:CDS 30.0%
ACATGAGTAGAAGAAGCAAA+CGG + chr1_3:61170595-61170614 Msa0130760:five_prime_UTR 35.0%
GCAAACGGATAAAAGAACTT+AGG + chr1_3:61170610-61170629 Msa0130760:five_prime_UTR 35.0%
GGAAGCAAAATGATGTCATT+TGG + chr1_3:61170644-61170663 Msa0130760:exon 35.0%
! AAAATGATGTCATTTGGCCT+TGG + chr1_3:61170650-61170669 Msa0130760:exon 35.0%
CATTGAAACATGGGAAAACA+TGG - chr1_3:61170732-61170751 None:intergenic 35.0%
AGGAGAAGACATTGAAACAT+GGG - chr1_3:61170741-61170760 None:intergenic 35.0%
AAGGAGAAGACATTGAAACA+TGG - chr1_3:61170742-61170761 None:intergenic 35.0%
CAAATAAGACAAACCTTCAG+AGG - chr1_3:61170819-61170838 None:intergenic 35.0%
TTCAGCTTATTTCCATGAGT+TGG + chr1_3:61170893-61170912 Msa0130760:intron 35.0%
TTCATAAGTGATCCAACTCA+TGG - chr1_3:61170908-61170927 None:intergenic 35.0%
TACTCTCATTCCTTGAAAGT+TGG + chr1_3:61171034-61171053 Msa0130760:intron 35.0%
AATTTGAGCACCAACTTTCA+AGG - chr1_3:61171047-61171066 None:intergenic 35.0%
CTAGGATCCTCAACATTTAT+AGG - chr1_3:61171140-61171159 None:intergenic 35.0%
AATGTTGAGGATCCTAGATA+TGG + chr1_3:61171143-61171162 Msa0130760:CDS 35.0%
ACTTCTGCACAAAACTCATA+TGG + chr1_3:61171247-61171266 Msa0130760:intron 35.0%
CTTCTGCACAAAACTCATAT+GGG + chr1_3:61171248-61171267 Msa0130760:intron 35.0%
TTCTGCACAAAACTCATATG+GGG + chr1_3:61171249-61171268 Msa0130760:intron 35.0%
AACTCAAATTGGACTCTCAA+AGG - chr1_3:61171305-61171324 None:intergenic 35.0%
CTTAGGACCAAAACTTAGAA+CGG + chr1_3:61171358-61171377 Msa0130760:intron 35.0%
ATTCAAACGTAGTTAACTGC+AGG + chr1_3:61171392-61171411 Msa0130760:intron 35.0%
TTCAAACGTAGTTAACTGCA+GGG + chr1_3:61171393-61171412 Msa0130760:intron 35.0%
!!! AGGGGTTTCTTTTATTTTGC+AGG + chr1_3:61171412-61171431 Msa0130760:intron 35.0%
TTCAAATCCCAACAACAACA+AGG - chr1_3:61171438-61171457 None:intergenic 35.0%
ATTACCATCATCCATGCAAT+AGG + chr1_3:61171481-61171500 Msa0130760:intron 35.0%
ATATCCTATTGCATGGATGA+TGG - chr1_3:61171488-61171507 None:intergenic 35.0%
TGGACACACACTTAATTCAA+CGG - chr1_3:61171637-61171656 None:intergenic 35.0%
TTCATGTACGTTGATCAGAA+TGG - chr1_3:61171657-61171676 None:intergenic 35.0%
CTACGATTGAATGACACATT+TGG - chr1_3:61171954-61171973 None:intergenic 35.0%
! ACAATCTTTTGCCGTTAAAG+TGG - chr1_3:61172184-61172203 None:intergenic 35.0%
AAGACGTAGTTGTTATGCAT+CGG - chr1_3:61172208-61172227 None:intergenic 35.0%
!! CAAATTTTGGTCACAGATTG+GGG - chr1_3:61172423-61172442 None:intergenic 35.0%
AACACAAGAGAGTTTAGAAG+AGG + chr1_3:61172581-61172600 Msa0130760:CDS 35.0%
AATTCATGAACAGATGGAGA+GGG - chr1_3:61172620-61172639 None:intergenic 35.0%
AAATTCATGAACAGATGGAG+AGG - chr1_3:61172621-61172640 None:intergenic 35.0%
CCTACAAATTCATGAACAGA+TGG - chr1_3:61172626-61172645 None:intergenic 35.0%
CCATCTGTTCATGAATTTGT+AGG + chr1_3:61172623-61172642 Msa0130760:intron 35.0%
CCAGATAAGAAACATATTCG+TGG - chr1_3:61173048-61173067 None:intergenic 35.0%
CCACGAATATGTTTCTTATC+TGG + chr1_3:61173045-61173064 Msa0130760:CDS 35.0%
!!! GATTTTGGTTACCAGTTTCA+GGG - chr1_3:61173110-61173129 None:intergenic 35.0%
!!! AGATTTTGGTTACCAGTTTC+AGG - chr1_3:61173111-61173130 None:intergenic 35.0%
!! GAGTTGATAGAAGAAATCAC+GGG + chr1_3:61173365-61173384 Msa0130760:CDS 35.0%
ATTTATGAGCATATGCCTAC+TGG + chr1_3:61173639-61173658 Msa0130760:three_prime_UTR 35.0%
AGAACTTAGGAAAGTTGCAG+AGG + chr1_3:61170623-61170642 Msa0130760:five_prime_UTR 40.0%
GAAAACATGGAACATGAAGG+AGG - chr1_3:61170719-61170738 None:intergenic 40.0%
TGGGAAAACATGGAACATGA+AGG - chr1_3:61170722-61170741 None:intergenic 40.0%
AACTAACCATGACTTACAGG+TGG - chr1_3:61171170-61171189 None:intergenic 40.0%
TCTGCACAAAACTCATATGG+GGG + chr1_3:61171250-61171269 Msa0130760:intron 40.0%
!! TCGACAACCGTTCTAAGTTT+TGG - chr1_3:61171368-61171387 None:intergenic 40.0%
TCAAACGTAGTTAACTGCAG+GGG + chr1_3:61171394-61171413 Msa0130760:intron 40.0%
CAAAAGAGAGATCGAGGAAA+AGG - chr1_3:61171610-61171629 None:intergenic 40.0%
GGACACACACTTAATTCAAC+GGG - chr1_3:61171636-61171655 None:intergenic 40.0%
GTAGGTCATCTATTGTACCA+AGG + chr1_3:61172521-61172540 Msa0130760:intron 40.0%
AGAGAGTTTAGAAGAGGTCA+AGG + chr1_3:61172587-61172606 Msa0130760:CDS 40.0%
TGCATGAATTGTTAAGCAGG+TGG + chr1_3:61172750-61172769 Msa0130760:intron 40.0%
! ATGTTCCAAGGCCTTTTTAG+CGG + chr1_3:61172921-61172940 Msa0130760:intron 40.0%
ACTTGTCTATCTGCAATGCA+AGG - chr1_3:61173020-61173039 None:intergenic 40.0%
!! ATTCGGCACTGAACAGATTT+TGG - chr1_3:61173125-61173144 None:intergenic 40.0%
TGCATGAATGATAGATCTGC+TGG + chr1_3:61173236-61173255 Msa0130760:intron 40.0%
ACTAAAACCAGCTGTGTTTG+CGG + chr1_3:61173307-61173326 Msa0130760:CDS 40.0%
!! AGTGGTTTGTTAGCACTGTT+GGG - chr1_3:61173341-61173360 None:intergenic 40.0%
!! TAGTGGTTTGTTAGCACTGT+TGG - chr1_3:61173342-61173361 None:intergenic 40.0%
AAGACTCATCCATTCTTTCC+AGG - chr1_3:61173666-61173685 None:intergenic 40.0%
TGCAGTTCGTAGAGATTCCA+AGG - chr1_3:61170670-61170689 None:intergenic 45.0%
!! TGGAACATGAAGGAGGCATT+CGG - chr1_3:61170712-61170731 None:intergenic 45.0%
AAACCTTCAGAGGATGCTCT+TGG - chr1_3:61170809-61170828 None:intergenic 45.0%
GCAACAAGACCATCCATGTT+TGG - chr1_3:61171005-61171024 None:intergenic 45.0%
CTTACAGGTGGACCATATCT+AGG - chr1_3:61171158-61171177 None:intergenic 45.0%
TATGGTCCACCTGTAAGTCA+TGG + chr1_3:61171161-61171180 Msa0130760:intron 45.0%
!! TTTGCAGGCCTTGTTGTTGT+TGG + chr1_3:61171427-61171446 Msa0130760:intron 45.0%
!! TTGCAGGCCTTGTTGTTGTT+GGG + chr1_3:61171428-61171447 Msa0130760:intron 45.0%
GGGATACAAAAGAGAGATCG+AGG - chr1_3:61171616-61171635 None:intergenic 45.0%
CTATTCATAGCTGGGAGAGA+GGG + chr1_3:61172106-61172125 Msa0130760:intron 45.0%
!! TGTTCCAAGGCCTTTTTAGC+GGG + chr1_3:61172922-61172941 Msa0130760:intron 45.0%
AGCATTGTGACCCGCTAAAA+AGG - chr1_3:61172935-61172954 None:intergenic 45.0%
! CTTATCTGGTTTAAGCGGAG+AGG + chr1_3:61173059-61173078 Msa0130760:CDS 45.0%
GTTGATGCTTTCCCTGAAAC+TGG + chr1_3:61173096-61173115 Msa0130760:CDS 45.0%
GGAGATCATGAGATGTTGGT+AGG + chr1_3:61173386-61173405 Msa0130760:intron 45.0%
! ATCTTTTATCGCGTGCAGAC+TGG + chr1_3:61173475-61173494 Msa0130760:intron 45.0%
GTGAGCTCGTAGAATTCACT+GGG - chr1_3:61173521-61173540 None:intergenic 45.0%
AGTGAGCTCGTAGAATTCAC+TGG - chr1_3:61173522-61173541 None:intergenic 45.0%
GAATCTCTACGAACTGCAGC+TGG + chr1_3:61170672-61170691 Msa0130760:CDS 50.0%
!! GGAACATGAAGGAGGCATTC+GGG - chr1_3:61170711-61170730 None:intergenic 50.0%
ATGCTCTTGGAGTCCAGTTG+AGG - chr1_3:61170796-61170815 None:intergenic 50.0%
!! ACTCCAAGAGCATCCTCTGA+AGG + chr1_3:61170803-61170822 Msa0130760:CDS 50.0%
GTTAGAGGGTGAGTTCCTGA+AGG + chr1_3:61172013-61172032 Msa0130760:CDS 50.0%
CCTCTCTCCCAGCTATGAAT+AGG - chr1_3:61172108-61172127 None:intergenic 50.0%
CCTATTCATAGCTGGGAGAG+AGG + chr1_3:61172105-61172124 Msa0130760:intron 50.0%
ACATGCTTACGCGTTCGCTT+TGG + chr1_3:61172544-61172563 Msa0130760:CDS 50.0%
CATGCTTACGCGTTCGCTTT+GGG + chr1_3:61172545-61172564 Msa0130760:CDS 50.0%
CACGGGAGATCATGAGATGT+TGG + chr1_3:61173382-61173401 Msa0130760:intron 50.0%
GAATTCTACGAGCTCACTCG+CGG + chr1_3:61173524-61173543 Msa0130760:CDS 50.0%
CCATTCTTTCCAGGTCCAGT+AGG - chr1_3:61173657-61173676 None:intergenic 50.0%
CCTACTGGACCTGGAAAGAA+TGG + chr1_3:61173654-61173673 Msa0130760:three_prime_UTR 50.0%
! CGAGGAAAAGGCACAGCTGA+AGG - chr1_3:61171598-61171617 None:intergenic 55.0%
CGAACGCGTAAGCATGTCCT+TGG - chr1_3:61172541-61172560 None:intergenic 55.0%
GTGACCCGCTAAAAAGGCCT+TGG - chr1_3:61172929-61172948 None:intergenic 55.0%
ACAAGAGCCGCAAACACAGC+TGG - chr1_3:61173317-61173336 None:intergenic 55.0%
GAGCATATGCCTACTGGACC+TGG + chr1_3:61173645-61173664 Msa0130760:three_prime_UTR 55.0%
Chromosome Type Strat End Strand Name
chr1_3 gene 61170539 61173774 61170539 ID=Msa0130760;Name=Msa0130760
chr1_3 mRNA 61170539 61173774 61170539 ID=Msa0130760-mRNA-1;Parent=Msa0130760;Name=Msa0130760-mRNA-1;_AED=0.23;_eAED=0.23;_QI=114|0.85|0.87|1|1|1|8|200|225
chr1_3 exon 61170539 61170824 61170539 ID=Msa0130760-mRNA-1:exon:20205;Parent=Msa0130760-mRNA-1
chr1_3 exon 61171099 61171172 61171099 ID=Msa0130760-mRNA-1:exon:20206;Parent=Msa0130760-mRNA-1
chr1_3 exon 61171434 61171475 61171434 ID=Msa0130760-mRNA-1:exon:20207;Parent=Msa0130760-mRNA-1
chr1_3 exon 61171993 61172034 61171993 ID=Msa0130760-mRNA-1:exon:20208;Parent=Msa0130760-mRNA-1
chr1_3 exon 61172525 61172608 61172525 ID=Msa0130760-mRNA-1:exon:20209;Parent=Msa0130760-mRNA-1
chr1_3 exon 61173030 61173117 61173030 ID=Msa0130760-mRNA-1:exon:20210;Parent=Msa0130760-mRNA-1
chr1_3 exon 61173306 61173399 61173306 ID=Msa0130760-mRNA-1:exon:20211;Parent=Msa0130760-mRNA-1
chr1_3 exon 61173493 61173774 61173493 ID=Msa0130760-mRNA-1:exon:20212;Parent=Msa0130760-mRNA-1
chr1_3 five_prime_UTR 61170539 61170652 61170539 ID=Msa0130760-mRNA-1:five_prime_utr;Parent=Msa0130760-mRNA-1
chr1_3 CDS 61170653 61170824 61170653 ID=Msa0130760-mRNA-1:cds;Parent=Msa0130760-mRNA-1
chr1_3 CDS 61171099 61171172 61171099 ID=Msa0130760-mRNA-1:cds;Parent=Msa0130760-mRNA-1
chr1_3 CDS 61171434 61171475 61171434 ID=Msa0130760-mRNA-1:cds;Parent=Msa0130760-mRNA-1
chr1_3 CDS 61171993 61172034 61171993 ID=Msa0130760-mRNA-1:cds;Parent=Msa0130760-mRNA-1
chr1_3 CDS 61172525 61172608 61172525 ID=Msa0130760-mRNA-1:cds;Parent=Msa0130760-mRNA-1
chr1_3 CDS 61173030 61173117 61173030 ID=Msa0130760-mRNA-1:cds;Parent=Msa0130760-mRNA-1
chr1_3 CDS 61173306 61173399 61173306 ID=Msa0130760-mRNA-1:cds;Parent=Msa0130760-mRNA-1
chr1_3 CDS 61173493 61173574 61173493 ID=Msa0130760-mRNA-1:cds;Parent=Msa0130760-mRNA-1
chr1_3 three_prime_UTR 61173575 61173774 61173575 ID=Msa0130760-mRNA-1:three_prime_utr;Parent=Msa0130760-mRNA-1
Gene Sequence

>Msa0130760

ATGATGTCATTTGGCCTTGGAATCTCTACGAACTGCAGCTGGTTGAGATGTCACGCCCGAATGCCTCCTTCATGTTCCATGTTTTCCCATGTTTCAATGTCTTCTCCTTCTTCTTGTTCCATTTTCAACTCTAATAATAACCTCAACTGGACTCCAAGAGCATCCTCTGAAGGACTTCCTAATGAGTTAGTTGAAGATTCAAAATTTGTTCCTATAAATGTTGAGGATCCTAGATATGGTCCACCTGCCTTGTTGTTGTTGGGATTTGAAGCAGATGAACATTTTAAGATTCAACAGTTTTTGAAAGAGTTAGAGGGTGAGTTCCTGAAGGTCATCTATTGTACCAAGGACATGCTTACGCGTTCGCTTTGGGATGTAATGCATACAACACAAGAGAGTTTAGAAGAGGTCAAGATAGACAAGTCACTTCCACGAATATGTTTCTTATCTGGTTTAAGCGGAGAGGAGATGATGATGTTCGTTGATGCTTTCCCTGAAACTGGACTAAAACCAGCTGTGTTTGCGGCTCTTGTTCCCAACAGTGCTAACAAACCACTATATGAGTTGATAGAAGAAATCACGGGAGATCATGAGATACTGGAGAGCAGTTGTGATAAAATTCCCAGTGAATTCTACGAGCTCACTCGCGGAGCATATGCATACGCATTATCGATATGA

Protein sequence

>Msa0130760

MMSFGLGISTNCSWLRCHARMPPSCSMFSHVSMSSPSSCSIFNSNNNLNWTPRASSEGLPNELVEDSKFVPINVEDPRYGPPALLLLGFEADEHFKIQQFLKELEGEFLKVIYCTKDMLTRSLWDVMHTTQESLEEVKIDKSLPRICFLSGLSGEEMMMFVDAFPETGLKPAVFAALVPNSANKPLYELIEEITGDHEILESSCDKIPSEFYELTRGAYAYALSI*