AlfalfaGEDB | Msa1203810

M. sativa cultivar zhongmu-4 / Msa1203810

KEGG: -
GO: -
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1203810	XP_039685312.1	96.817	597	19	0	1	597	1	597	0.0	1188

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1203810	sp\|Q8GUM4\|Y3739_ARATH	39.789	568	318	7	21	586	21	566	5.81e-136	411

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0004180	Msa1203810	-0.803200	3.905701e-49	-8.615850e-47
Msa0026420	Msa1203810	0.818843	1.586070e-52	-8.615850e-47
Msa0027020	Msa1203810	-0.807616	4.632759e-50	-8.615850e-47
Msa0031410	Msa1203810	0.804506	2.091198e-49	-8.615850e-47
Msa0034540	Msa1203810	0.848530	5.780960e-60	-8.615850e-47
Msa0052780	Msa1203810	0.827214	1.770053e-54	-8.615850e-47
Msa0060690	Msa1203810	0.802980	4.337260e-49	-8.615850e-47
Msa0070120	Msa1203810	0.830525	2.795650e-55	-8.615850e-47
Msa0078700	Msa1203810	0.810127	1.345046e-50	-8.615850e-47
Msa0090380	Msa1203810	0.813428	2.572098e-51	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1203810	MtrunA17_Chr8g0374991	96.817	597	19	0	1	597	1	597	0.0	1188
Msa1203810	MtrunA17_Chr3g0120631	41.971	548	304	8	11	554	12	549	6.53e-143	425
Msa1203810	MtrunA17_Chr7g0226361	38.600	557	311	10	15	561	13	548	1.72e-138	415
Msa1203810	MtrunA17_Chr6g0458321	39.107	560	321	9	5	560	21	564	1.62e-132	400
Msa1203810	MtrunA17_Chr3g0120571	49.338	302	148	4	11	310	12	310	5.08e-89	278
Msa1203810	MtrunA17_Chr3g0120581	36.923	195	119	2	360	554	5	195	1.28e-38	141

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1203810	AT4G37030.1	65.603	564	192	1	1	562	1	564	0.0	764
Msa1203810	AT4G12680.1	42.697	534	282	6	28	552	28	546	2.91e-146	435
Msa1203810	AT5G40640.1	41.603	524	288	6	21	542	21	528	1.15e-137	413
Msa1203810	AT3G27390.2	39.789	568	318	7	21	586	21	566	5.90e-137	411
Msa1203810	AT3G27390.1	39.789	568	318	7	21	586	21	566	5.90e-137	411

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Find 145 sgRNAs with CRISPR-Local

Find 283 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACAAGAAGGTATATTGG+TGG	0.579194	8_1:+58931059	None:intergenic
AAAATGAATATGGAAGTCAA+AGG	0.621465	8_1:+58931010	None:intergenic
AAATTAATTGTTACTTCAAA+AGG	0.318285	8_1:+58930598	None:intergenic
AAATTATGCAGGCTTTATTG+TGG	0.530901	8_1:-58930709	Msa1203810:intron
AAATTGAGGGAATTTCCAGA+AGG	0.670524	8_1:-58927416	Msa1203810:intron
AACCATATGCCAAACAAAGC+TGG	0.514652	8_1:+58930461	None:intergenic
AACCTGATATACTATAATAG+AGG	0.530458	8_1:+58929173	None:intergenic
AACTCATTTCAACAGACCAA+AGG	0.636042	8_1:-58927622	Msa1203810:CDS
AAGATCTTTCCGTAGAGGTT+TGG	0.407048	8_1:-58928958	Msa1203810:CDS
AAGATTGTCAAACCAGCAAT+TGG	0.382683	8_1:+58929267	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AGCCATGATACTAGTAATAA+AGG	+	chr8_1:58926969-58926988	None:intergenic	30.0%
TGACTCATTATCATATCTGA+AGG	+	chr8_1:58927567-58927586	None:intergenic	30.0%
GCTATAATATTGTTGTGTAG+CGG	-	chr8_1:58927757-58927776	Msa1203810:CDS	30.0%
CAATCGCAAATTGTAGAAAA+TGG	+	chr8_1:58927798-58927817	None:intergenic	30.0%
TCAAGTAACTTGGATATGAA+TGG	+	chr8_1:58927920-58927939	None:intergenic	30.0%
TTCATATCCAAGTTACTTGA+AGG	-	chr8_1:58927920-58927939	Msa1203810:intron	30.0%
CACGTCACATAAATAAACAA+AGG	+	chr8_1:58928005-58928024	None:intergenic	30.0%
ACAACTTATGACATGTTGAT+AGG	-	chr8_1:58928263-58928282	Msa1203810:intron	30.0%
TTGCTAATGATAGACATGTT+TGG	+	chr8_1:58928422-58928441	None:intergenic	30.0%
TGCCTCTATTATAGTATATC+AGG	-	chr8_1:58928750-58928769	Msa1203810:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr8_1	gene	58926771	58931176	58926771	ID=Msa1203810;Name=Msa1203810
chr8_1	mRNA	58926771	58931176	58926771	ID=Msa1203810-mRNA-1;Parent=Msa1203810;Name=Msa1203810-mRNA-1;_AED=0.13;_eAED=0.13;_QI=212\|0.87\|0.33\|0.88\|1\|1\|9\|0\|597
chr8_1	exon	58926771	58927014	58926771	ID=Msa1203810-mRNA-1:exon:19075;Parent=Msa1203810-mRNA-1
chr8_1	exon	58927417	58927865	58927417	ID=Msa1203810-mRNA-1:exon:19074;Parent=Msa1203810-mRNA-1
chr8_1	exon	58928624	58928795	58928624	ID=Msa1203810-mRNA-1:exon:19073;Parent=Msa1203810-mRNA-1
chr8_1	exon	58928876	58928982	58928876	ID=Msa1203810-mRNA-1:exon:19072;Parent=Msa1203810-mRNA-1
chr8_1	exon	58929176	58929464	58929176	ID=Msa1203810-mRNA-1:exon:19071;Parent=Msa1203810-mRNA-1
chr8_1	exon	58929962	58930095	58929962	ID=Msa1203810-mRNA-1:exon:19070;Parent=Msa1203810-mRNA-1
chr8_1	exon	58930337	58930532	58930337	ID=Msa1203810-mRNA-1:exon:19069;Parent=Msa1203810-mRNA-1
chr8_1	exon	58930612	58930720	58930612	ID=Msa1203810-mRNA-1:exon:19068;Parent=Msa1203810-mRNA-1
chr8_1	exon	58930871	58931176	58930871	ID=Msa1203810-mRNA-1:exon:19067;Parent=Msa1203810-mRNA-1
chr8_1	five_prime_UTR	58930965	58931176	58930965	ID=Msa1203810-mRNA-1:five_prime_utr;Parent=Msa1203810-mRNA-1
chr8_1	CDS	58930871	58930964	58930871	ID=Msa1203810-mRNA-1:cds;Parent=Msa1203810-mRNA-1
chr8_1	CDS	58930612	58930720	58930612	ID=Msa1203810-mRNA-1:cds;Parent=Msa1203810-mRNA-1
chr8_1	CDS	58930337	58930532	58930337	ID=Msa1203810-mRNA-1:cds;Parent=Msa1203810-mRNA-1
chr8_1	CDS	58929962	58930095	58929962	ID=Msa1203810-mRNA-1:cds;Parent=Msa1203810-mRNA-1
chr8_1	CDS	58929176	58929464	58929176	ID=Msa1203810-mRNA-1:cds;Parent=Msa1203810-mRNA-1
chr8_1	CDS	58928876	58928982	58928876	ID=Msa1203810-mRNA-1:cds;Parent=Msa1203810-mRNA-1
chr8_1	CDS	58928624	58928795	58928624	ID=Msa1203810-mRNA-1:cds;Parent=Msa1203810-mRNA-1
chr8_1	CDS	58927417	58927865	58927417	ID=Msa1203810-mRNA-1:cds;Parent=Msa1203810-mRNA-1
chr8_1	CDS	58926771	58927014	58926771	ID=Msa1203810-mRNA-1:cds;Parent=Msa1203810-mRNA-1

Gene Sequence

>Msa1203810

ATGGCTTTTCTTCCTAATTCTATAGAAGATTGGATTAAAGCTTCTTATGTTGTTTTTGCATTCTTTTCCGCTCTTTTCCTTGGTGCCATAAAAGGCTTTATTGTGGGTCCTATTGCTGCTTTGATACTGATTATAGGAAACGTTGGGGTGATTTTGGGATTGTTTCCTGCACATGTGGCTTGGACTGTTTACACCCTTTTGAAGGTTGAAATATTTGATGCAGCTTTGAAAGTTGCTATTTTGATTGCTTTGCCAGCTTTGTTTGGCATATGGTTGGGTTTAGGTATAGCTGGTAGTGTTCTTGTTGGTGTTGGGTATGGATTTTTCACTCCTTGGATTTCAACTTTCGAGGCCTTCAGATATGATAATGAGTCAAAGAAATTCTTGCACTGTATTGTGGATGGAACCTTGGGAACTATCAAAGGCAGTTGTACTGTGGTTAGGGATTTTGCAGATTTATGTTACCATTCATATCCAAGTTACTTGAAGGAACTACGCGAATCACCTTGTTCAGATCAGTGTAAGACACTAAGGTTAATTCATGTTCCTGCATGTGTGATTGTAGGGATAGTGGGACTAATTGTTGAGGTTCCTCTATTCACTGCAATTGCTATAGTAAAGAGTCCATACCTATTGTTCAAGGGCTGGTACAGACTTTTGCATGATTTAATCAGCAGAGAAGGTCCATTCCTTGAAACAGTTTGTGTCCCAATTGCTGGTTTGACAATCTTTGTGTGGCCTCTTGTTGTCATTGCCAGCATTTCATTGGCTATTTTCTCTAGCATTTTTGTCGGACTATATGCCTCTATTATAGTATATCAGGAAAGATCTTTCCGTAGAGGTTTGGCTTATATAGTGGCAATGGTTGCTGAGTTTGATGAATATACGAATGATTGGCTCTATCTTAGAGAGGGGTCATACTTTCCAAAGCCCCAATATCGAAAGAAGATGGTCTCTCAATCGTCCGAGTTTTCTACTCGAGGAAACAGTGGGTCAGAAAGCAGATCAAATACTACTATGGAACCGCCTGCAATGTTTATGCCAAACTTAGCTCCTTCAAGATCTGTTAGAGAGACCATTCAAGAAGTGAAAATGGTGCAGATATGGGGAAATATGATGAGGGACTGCGAGATAAGAGGCAAGGAATTATTGGATGCTAATGTACTCACAGCTGCCGATCTTTACGAGTGGTTGCGAGGAAAAAATGTTAATGAAGCATCCATAGTTGGTATTGGATTGCCTTGTTATTCACTTCTACAAACACTTCTCTTTTCCATCAAAGCCAACTCAAGTGGTGTATTGCTGCTTGATGATTTCGAGATAACTCATTTCAACAGACCAAAGGACAAGTTGTTGGATTGGTTCTTCAATCCGGTTATGGTTCTCAAGGAACAGATAAGGGTTATTAAGTTGGTGGAAGGTGAAGTGAGATACTTGGAAAAAGTTGTTCTTTTTGGAGTTAATAAACAAAGGTTGAAGACTTGGGATAATGGTAGCTTATTGATTCCTGATGGTCTTAGAGCTGCTCAAATTGAGGGAATTTCCAGAAGGATGATTGGAATGATAAGAGGTGTATCAAAGCTTCCAACATACAGAAGGAAGTTTCGTCAAGTCGTTAAGGCATTATTTACTCATTCATTGGAGAAAGATGCTTCAAAAAAGGCTTTGGTTACACATTCTCAGGATAGAGATGTTTCTGAAAAGATTTTGGTTACTCATTATTTGGAGAAAGATCCTTCTGGTAGATCAAGTACAAGGTCTATAGTATCAGTTCCATCAGATGAAAATGTTTAA

Protein sequence

>Msa1203810

MAFLPNSIEDWIKASYVVFAFFSALFLGAIKGFIVGPIAALILIIGNVGVILGLFPAHVAWTVYTLLKVEIFDAALKVAILIALPALFGIWLGLGIAGSVLVGVGYGFFTPWISTFEAFRYDNESKKFLHCIVDGTLGTIKGSCTVVRDFADLCYHSYPSYLKELRESPCSDQCKTLRLIHVPACVIVGIVGLIVEVPLFTAIAIVKSPYLLFKGWYRLLHDLISREGPFLETVCVPIAGLTIFVWPLVVIASISLAIFSSIFVGLYASIIVYQERSFRRGLAYIVAMVAEFDEYTNDWLYLREGSYFPKPQYRKKMVSQSSEFSTRGNSGSESRSNTTMEPPAMFMPNLAPSRSVRETIQEVKMVQIWGNMMRDCEIRGKELLDANVLTAADLYEWLRGKNVNEASIVGIGLPCYSLLQTLLFSIKANSSGVLLLDDFEITHFNRPKDKLLDWFFNPVMVLKEQIRVIKLVEGEVRYLEKVVLFGVNKQRLKTWDNGSLLIPDGLRAAQIEGISRRMIGMIRGVSKLPTYRRKFRQVVKALFTHSLEKDASKKALVTHSQDRDVSEKILVTHYLEKDPSGRSSTRSIVSVPSDENV*