Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1175800 | XP_013444545.1 | 98.361 | 427 | 7 | 0 | 1 | 427 | 1 | 427 | 0.0 | 877 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1175800 | sp|O24457|ODPA3_ARATH | 82.323 | 396 | 58 | 5 | 43 | 427 | 34 | 428 | 0.0 | 665 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0105420 | Msa1175800 | 0.822107 | 2.827303e-53 | -8.615850e-47 |
| Msa0120330 | Msa1175800 | 0.830769 | 2.436768e-55 | -8.615850e-47 |
| Msa0709480 | Msa1175800 | 0.812709 | 3.699367e-51 | -8.615850e-47 |
| Msa0735470 | Msa1175800 | 0.816568 | 5.172386e-52 | -8.615850e-47 |
| Msa0149620 | Msa1175800 | 0.800896 | 1.162138e-48 | -8.615850e-47 |
| Msa0207000 | Msa1175800 | 0.800020 | 1.753268e-48 | -8.615850e-47 |
| Msa0207180 | Msa1175800 | 0.807326 | 5.337530e-50 | -8.615850e-47 |
| Msa0224690 | Msa1175800 | 0.811115 | 8.227980e-51 | -8.615850e-47 |
| Msa1000470 | Msa1175800 | 0.806327 | 8.681159e-50 | -8.615850e-47 |
| Msa1020710 | Msa1175800 | 0.800185 | 1.622748e-48 | -8.615850e-47 |
| Msa1050890 | Msa1175800 | 0.814746 | 1.316640e-51 | -8.615850e-47 |
| Msa0305640 | Msa1175800 | 0.817127 | 3.874405e-52 | -8.615850e-47 |
| Msa0315480 | Msa1175800 | 0.802136 | 6.472485e-49 | -8.615850e-47 |
| Msa1125780 | Msa1175800 | 0.814037 | 1.888754e-51 | -8.615850e-47 |
| Msa1125950 | Msa1175800 | 0.814060 | 1.867127e-51 | -8.615850e-47 |
| Msa1171340 | Msa1175800 | 0.814476 | 1.511328e-51 | -8.615850e-47 |
| Msa1175800 | Msa1175820 | 0.810356 | 1.200557e-50 | -8.615850e-47 |
| Msa1175800 | Msa1201990 | 0.812701 | 3.713114e-51 | -8.615850e-47 |
| Msa1175800 | Msa1316050 | 0.951249 | 3.040617e-109 | -8.615850e-47 |
| Msa1175800 | Msa1323060 | 0.816261 | 6.057337e-52 | -8.615850e-47 |
| Msa1175800 | Msa1375630 | 0.802318 | 5.938208e-49 | -8.615850e-47 |
| Msa1175800 | Msa1376530 | 0.800163 | 1.639296e-48 | -8.615850e-47 |
| Msa1175800 | Msa1376640 | 0.805666 | 1.195786e-49 | -8.615850e-47 |
| Msa1175800 | Msa1382720 | 0.801347 | 9.398280e-49 | -8.615850e-47 |
| Msa1175800 | Msa1385620 | 0.814767 | 1.302934e-51 | -8.615850e-47 |
| Msa0546380 | Msa1175800 | 0.807751 | 4.336886e-50 | -8.615850e-47 |
| Msa0855020 | Msa1175800 | 0.813558 | 2.409238e-51 | -8.615850e-47 |
| Msa0890250 | Msa1175800 | 0.804024 | 2.634713e-49 | -8.615850e-47 |
| Msa0907700 | Msa1175800 | 0.812904 | 3.352346e-51 | -8.615850e-47 |
| Msa0925160 | Msa1175800 | 0.806300 | 8.796628e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1175800 | MtrunA17_Chr8g0345911 | 98.361 | 427 | 7 | 0 | 1 | 427 | 1 | 427 | 0.0 | 877 |
| Msa1175800 | MtrunA17_Chr5g0414991 | 39.650 | 343 | 183 | 6 | 81 | 416 | 64 | 389 | 2.20e-79 | 250 |
| Msa1175800 | MtrunA17_Chr8g0364201 | 38.068 | 352 | 194 | 6 | 72 | 416 | 55 | 389 | 2.36e-78 | 248 |
| Msa1175800 | MtrunA17_Chr7g0276281 | 90.805 | 87 | 8 | 0 | 256 | 342 | 15 | 101 | 1.02e-52 | 171 |
| Msa1175800 | MtrunA17_Chr3g0125611 | 26.866 | 335 | 231 | 4 | 69 | 401 | 113 | 435 | 5.54e-34 | 132 |
| Msa1175800 | MtrunA17_Chr3g0130311 | 25.826 | 333 | 237 | 3 | 72 | 402 | 97 | 421 | 1.78e-33 | 130 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1175800 | AT1G01090.1 | 82.323 | 396 | 58 | 5 | 43 | 427 | 34 | 428 | 0.0 | 665 |
| Msa1175800 | AT1G59900.1 | 39.650 | 343 | 180 | 7 | 78 | 410 | 55 | 380 | 1.51e-79 | 251 |
| Msa1175800 | AT1G59900.2 | 39.583 | 336 | 179 | 6 | 78 | 406 | 55 | 373 | 7.57e-79 | 249 |
| Msa1175800 | AT1G24180.1 | 35.917 | 387 | 219 | 7 | 35 | 404 | 3 | 377 | 1.73e-76 | 243 |
| Msa1175800 | AT5G09300.2 | 26.786 | 336 | 232 | 5 | 68 | 401 | 45 | 368 | 4.55e-34 | 131 |
| Msa1175800 | AT5G09300.1 | 26.786 | 336 | 232 | 5 | 68 | 401 | 116 | 439 | 6.80e-34 | 132 |
| Msa1175800 | AT1G21400.4 | 25.305 | 328 | 229 | 4 | 77 | 399 | 33 | 349 | 3.25e-29 | 117 |
| Msa1175800 | AT1G21400.2 | 25.305 | 328 | 229 | 4 | 77 | 399 | 33 | 349 | 3.25e-29 | 117 |
| Msa1175800 | AT1G21400.3 | 25.305 | 328 | 229 | 4 | 77 | 399 | 50 | 366 | 5.19e-29 | 117 |
| Msa1175800 | AT1G21400.5 | 25.373 | 335 | 233 | 5 | 77 | 405 | 177 | 500 | 5.94e-29 | 119 |
| Msa1175800 | AT1G21400.1 | 25.305 | 328 | 229 | 4 | 77 | 399 | 125 | 441 | 6.63e-29 | 118 |
| Msa1175800 | AT5G09300.3 | 27.419 | 248 | 172 | 2 | 68 | 315 | 116 | 355 | 8.41e-25 | 105 |
| Msa1175800 | AT5G09300.4 | 27.604 | 192 | 131 | 2 | 68 | 259 | 116 | 299 | 5.46e-18 | 85.1 |
| Msa1175800 | AT5G34780.1 | 28.729 | 181 | 127 | 1 | 221 | 399 | 31 | 211 | 1.01e-15 | 78.6 |
| Msa1175800 | AT1G21400.6 | 25.683 | 183 | 128 | 2 | 77 | 259 | 177 | 351 | 2.39e-13 | 71.6 |
Find 129 sgRNAs with CRISPR-Local
Find 274 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCATTGGGATGTCACATCTT+AGG | 0.211388 | 8_1:-7362261 | Msa1175800:CDS |
| AAGAAGAGAGTGTGAGAATT+TGG | 0.214784 | 8_1:+7364401 | None:intergenic |
| AGACCCTCAGATATGGAAAA+AGG | 0.238438 | 8_1:-7362230 | Msa1175800:CDS |
| TCTTCAACAAACCTCCAATT+TGG | 0.238999 | 8_1:-7364214 | Msa1175800:intron |
| ATGATAAAGGGTTACCAAAT+TGG | 0.243765 | 8_1:+7364200 | None:intergenic |
| ATCAGCATACTTTGTTCTTT+AGG | 0.247733 | 8_1:-7360433 | Msa1175800:three_prime_UTR |
| CTTTATGAAGACATGGTATT+AGG | 0.283149 | 8_1:-7362781 | Msa1175800:CDS |
| TTCGCCGATCCAAAAGGTTT+TGG | 0.285944 | 8_1:-7360622 | Msa1175800:CDS |
| GGTCCAATTCCAAAACCTTT+TGG | 0.286792 | 8_1:+7360613 | None:intergenic |
| GACAGGATGTTGCCGAGGTC+AGG | 0.320528 | 8_1:-7362545 | Msa1175800:CDS |
| GGAGATGGAACTTGTAATAA+TGG | 0.327172 | 8_1:-7362361 | Msa1175800:CDS |
| ATGTGCTGAGATGTATTATA+GGG | 0.340546 | 8_1:-7362740 | Msa1175800:CDS |
| ATGTGGTTATGAAAGGAAAA+TGG | 0.342935 | 8_1:+7364494 | None:intergenic |
| ATACTTGTGCCATGAGAATA+TGG | 0.347178 | 8_1:-7360269 | Msa1175800:three_prime_UTR |
| AAATGCCAATGTCACGTTAT+CGG | 0.348170 | 8_1:+7362387 | None:intergenic |
| TGTTCTTTAGGTTGGAAGTT+TGG | 0.351584 | 8_1:-7360421 | Msa1175800:three_prime_UTR |
| AGCTGGCTGCGAAGTGGTGC+AGG | 0.359831 | 8_1:+7360658 | None:intergenic |
| CAACTTCAGACCCTCAGATA+TGG | 0.372350 | 8_1:-7362237 | Msa1175800:CDS |
| TGTGAGACTTACAGATTTAG+AGG | 0.373364 | 8_1:-7362088 | Msa1175800:CDS |
| GACAATCTTCAAAGTTTAAG+TGG | 0.384770 | 8_1:-7360350 | Msa1175800:three_prime_UTR |
| CTTGGAGTTGAAGAATTGAT+AGG | 0.391470 | 8_1:+7364372 | None:intergenic |
| AATGTGCTGAGATGTATTAT+AGG | 0.392055 | 8_1:-7362741 | Msa1175800:CDS |
| GAAAGAGAGTGGTTTATCAT+TGG | 0.392879 | 8_1:+7364347 | None:intergenic |
| CAGATTTAGAGGACATTCAT+TGG | 0.395237 | 8_1:-7362077 | Msa1175800:CDS |
| ATGTTCACGCGTTGAGTAAA+GGG | 0.396851 | 8_1:-7362609 | Msa1175800:CDS |
| CAAAAGAGAGGTGTTGAATC+AGG | 0.400382 | 8_1:-7362416 | Msa1175800:CDS |
| CAGAAATTAATGTAAGGAAT+GGG | 0.401783 | 8_1:+7364555 | None:intergenic |
| CCTCAAATACTTGATGAATC+CGG | 0.405964 | 8_1:+7362666 | None:intergenic |
| GAAAACAATTTGTGGGCCAT+TGG | 0.409242 | 8_1:-7362277 | Msa1175800:CDS |
| GTCTGAACATGGCTGCTTTG+TGG | 0.415529 | 8_1:-7362324 | Msa1175800:CDS |
| AGTGGTTTATCATTGGATCT+TGG | 0.422237 | 8_1:+7364354 | None:intergenic |
| GCATACTTTGTTCTTTAGGT+TGG | 0.430489 | 8_1:-7360429 | Msa1175800:three_prime_UTR |
| CTTGCAGCTTATTACTAAAG+AGG | 0.437176 | 8_1:-7362815 | Msa1175800:intron |
| CATTGGGATGTCACATCTTA+GGG | 0.437954 | 8_1:-7362260 | Msa1175800:CDS |
| CTAATACCATGTCTTCATAA+AGG | 0.442808 | 8_1:+7362782 | None:intergenic |
| TTATTATTGTTTGTGAACTT+AGG | 0.449752 | 8_1:-7360383 | Msa1175800:three_prime_UTR |
| GAAATTACCAATTGTGTTTG+TGG | 0.451296 | 8_1:-7362302 | Msa1175800:CDS |
| AGCCACTGAACAAGAATTGA+AGG | 0.452201 | 8_1:-7360740 | Msa1175800:CDS |
| GGACAAGAAGCTGTTTCAAC+CGG | 0.459532 | 8_1:-7362685 | Msa1175800:CDS |
| CATGTTCACGCGTTGAGTAA+AGG | 0.460084 | 8_1:-7362610 | Msa1175800:CDS |
| CCGGATTCATCAAGTATTTG+AGG | 0.461143 | 8_1:-7362666 | Msa1175800:CDS |
| TTTAAGAATGTGGTTATGAA+AGG | 0.463690 | 8_1:+7364487 | None:intergenic |
| AGGAGAAGGACCAACTTTAG+TGG | 0.464470 | 8_1:-7362113 | Msa1175800:CDS |
| TCAGAAATTAATGTAAGGAA+TGG | 0.469268 | 8_1:+7364554 | None:intergenic |
| GGGTCCAGCATTCGGAATGC+CGG | 0.469784 | 8_1:-7362209 | Msa1175800:CDS |
| CCAAGAAAAGAGGAAGAAGA+AGG | 0.474320 | 8_1:+7364300 | None:intergenic |
| TGCCTTCAATTCTTGTTCAG+TGG | 0.476765 | 8_1:+7360738 | None:intergenic |
| CCAGGGTTACGAAGTTCATC+AGG | 0.477034 | 8_1:+7362049 | None:intergenic |
| TGAAGAAGAACAGCAGCAAC+AGG | 0.481861 | 8_1:+7364231 | None:intergenic |
| TTTCTATTTGGCAGCTGAGA+AGG | 0.484309 | 8_1:-7360824 | Msa1175800:intron |
| ATGCCGGGTGTTCATGTCGA+TGG | 0.485841 | 8_1:-7362193 | Msa1175800:CDS |
| AATGCAGCACCGGTGGCCAC+TGG | 0.488288 | 8_1:+7362451 | None:intergenic |
| TGGCGAAGGAGGCAATTGAC+AGG | 0.490694 | 8_1:-7362144 | Msa1175800:CDS |
| CATGAGAATATGGAGTAGAT+TGG | 0.491612 | 8_1:-7360259 | Msa1175800:three_prime_UTR |
| TTGTGGTGGAAAACAATTTG+TGG | 0.493463 | 8_1:-7362285 | Msa1175800:CDS |
| ATGAATCAGAAATTAATGTA+AGG | 0.494613 | 8_1:+7364549 | None:intergenic |
| CTGAGTAGATCCAAGAAAAG+AGG | 0.497050 | 8_1:+7364290 | None:intergenic |
| GCAGTGCCTTCAGTAAACTT+TGG | 0.498498 | 8_1:+7360565 | None:intergenic |
| CAGCTTATTACTAAAGAGGA+AGG | 0.500564 | 8_1:-7362811 | Msa1175800:CDS |
| GGTCCAGCATTCGGAATGCC+GGG | 0.501988 | 8_1:-7362208 | Msa1175800:CDS |
| GAACTCTTCGGTAAGGCGAC+AGG | 0.504468 | 8_1:-7362562 | Msa1175800:CDS |
| AAAACAATTTGTGGGCCATT+GGG | 0.506998 | 8_1:-7362276 | Msa1175800:CDS |
| ATAAAGGGTTACCAAATTGG+AGG | 0.513859 | 8_1:+7364203 | None:intergenic |
| ACACCCGGCATTCCGAATGC+TGG | 0.515890 | 8_1:+7362205 | None:intergenic |
| ACAGGATGTTGCCGAGGTCA+GGG | 0.520072 | 8_1:-7362544 | Msa1175800:CDS |
| TATTTCTTCAATGCAGTGAT+GGG | 0.524511 | 8_1:+7360781 | None:intergenic |
| GGTCAGAGAAGTGGCGAAGG+AGG | 0.527619 | 8_1:-7362155 | Msa1175800:CDS |
| CTCAGCACATTTGTCTTCAA+AGG | 0.527792 | 8_1:+7362753 | None:intergenic |
| CGAAGACATTCTCTAGAAGC+TGG | 0.528527 | 8_1:+7360641 | None:intergenic |
| CAATCTACTCCATATTCTCA+TGG | 0.529432 | 8_1:+7360260 | None:intergenic |
| GCTGAGAAGGAACACTATGC+TGG | 0.530450 | 8_1:-7360811 | Msa1175800:CDS |
| GACAGGGCTAGAAGAGGAGA+AGG | 0.531725 | 8_1:-7362127 | Msa1175800:CDS |
| CTTCTTGTCCATTGTACAAG+TGG | 0.537841 | 8_1:+7362698 | None:intergenic |
| AATGTCTTCGCCGATCCAAA+AGG | 0.541225 | 8_1:-7360628 | Msa1175800:CDS |
| GTCTCACATTCCACTAAAGT+TGG | 0.543097 | 8_1:+7362103 | None:intergenic |
| GTTCTTTGAGTGTCTGAACA+TGG | 0.549160 | 8_1:-7362335 | Msa1175800:CDS |
| GAAGGAACACTATGCTGGTA+GGG | 0.549726 | 8_1:-7360806 | Msa1175800:CDS |
| AGATCAGAAGAGAAAGAGAG+TGG | 0.552050 | 8_1:+7364336 | None:intergenic |
| AGAAGGAACACTATGCTGGT+AGG | 0.556011 | 8_1:-7360807 | Msa1175800:CDS |
| TTGGAATTGGACCGGATGGA+AGG | 0.556302 | 8_1:-7360603 | Msa1175800:CDS |
| GGAAAATGGAACACAAAATG+AGG | 0.556966 | 8_1:+7364508 | None:intergenic |
| TGTGGTGGAAAACAATTTGT+GGG | 0.561089 | 8_1:-7362284 | Msa1175800:CDS |
| AGAAATTAATGTAAGGAATG+GGG | 0.561423 | 8_1:+7364556 | None:intergenic |
| CTTTACTCAACGCGTGAACA+TGG | 0.563353 | 8_1:+7362611 | None:intergenic |
| GAAGGTCAGAGAAGTGGCGA+AGG | 0.564863 | 8_1:-7362158 | Msa1175800:CDS |
| CTTCATGGAAAATGCAGCAC+CGG | 0.565146 | 8_1:+7362441 | None:intergenic |
| GAAGGAATTCCAGTGGCCAC+CGG | 0.565196 | 8_1:-7362460 | Msa1175800:CDS |
| ATTACCAATTGTGTTTGTGG+TGG | 0.566402 | 8_1:-7362299 | Msa1175800:CDS |
| CAGCAACAGGTGGTGATGAA+CGG | 0.566780 | 8_1:+7364244 | None:intergenic |
| CACTCATCACTTCTCGAGAA+GGG | 0.567182 | 8_1:+7362584 | None:intergenic |
| GTCATAGACAATTAAAACAT+AGG | 0.568569 | 8_1:-7364638 | Msa1175800:five_prime_UTR |
| TGCCGGGTGTTCATGTCGAT+GGG | 0.570097 | 8_1:-7362192 | Msa1175800:CDS |
| GCTGGCTGCGAAGTGGTGCA+GGG | 0.575928 | 8_1:+7360659 | None:intergenic |
| CAAGAAAAGAGGAAGAAGAA+GGG | 0.576220 | 8_1:+7364301 | None:intergenic |
| GAATACAAGGGAGTGAGACA+TGG | 0.576570 | 8_1:+7364584 | None:intergenic |
| GATGAGTGAACTCTTCGGTA+AGG | 0.582580 | 8_1:-7362569 | Msa1175800:CDS |
| TCAAAAGAACACAACGTGCT+CGG | 0.582628 | 8_1:-7362502 | Msa1175800:CDS |
| TCGCATCTATACCTTCCATC+CGG | 0.583539 | 8_1:+7360592 | None:intergenic |
| ATGAAGACATGGTATTAGGA+AGG | 0.584772 | 8_1:-7362777 | Msa1175800:CDS |
| TCACTCATCACTTCTCGAGA+AGG | 0.588915 | 8_1:+7362583 | None:intergenic |
| AGCTTATTACTAAAGAGGAA+GGG | 0.594519 | 8_1:-7362810 | Msa1175800:CDS |
| GGGTGTTCATGTCGATGGGA+TGG | 0.594813 | 8_1:-7362188 | Msa1175800:CDS |
| ATATTTCTTCAATGCAGTGA+TGG | 0.596499 | 8_1:+7360780 | None:intergenic |
| GCAATTGACAGGGCTAGAAG+AGG | 0.598579 | 8_1:-7362133 | Msa1175800:CDS |
| GCATTGAACCACCCTGACCT+CGG | 0.598594 | 8_1:+7362533 | None:intergenic |
| TGATTCCGATAACGTGACAT+TGG | 0.606266 | 8_1:-7362392 | Msa1175800:CDS |
| TTCCATGAAGTACAAAAGAG+AGG | 0.611043 | 8_1:-7362428 | Msa1175800:CDS |
| ATCCCATCGACATGAACACC+CGG | 0.611083 | 8_1:+7362190 | None:intergenic |
| CATGGAAAATGCAGCACCGG+TGG | 0.619965 | 8_1:+7362444 | None:intergenic |
| CCTAAGATGTGACATCCCAA+TGG | 0.632354 | 8_1:+7362261 | None:intergenic |
| GTTAGTCCTTTATGAAGACA+TGG | 0.636628 | 8_1:-7362788 | Msa1175800:CDS |
| TCTAGAAGCTGGCTGCGAAG+TGG | 0.637368 | 8_1:+7360652 | None:intergenic |
| GGCGAAGGAGGCAATTGACA+GGG | 0.640812 | 8_1:-7362143 | Msa1175800:CDS |
| GAAATTAATGTAAGGAATGG+GGG | 0.641215 | 8_1:+7364557 | None:intergenic |
| GAGGATCCAAAGTTTACTGA+AGG | 0.642572 | 8_1:-7360571 | Msa1175800:CDS |
| TGTGCTGAGATGTATTATAG+GGG | 0.642715 | 8_1:-7362739 | Msa1175800:CDS |
| CCTGATGAACTTCGTAACCC+TGG | 0.643454 | 8_1:-7362049 | Msa1175800:intron |
| GTGCTGAGATGTATTATAGG+GGG | 0.644449 | 8_1:-7362738 | Msa1175800:CDS |
| GAAGTGATGAGTGAACTCTT+CGG | 0.646509 | 8_1:-7362574 | Msa1175800:CDS |
| AATAGACAAGAAAATTGATG+AGG | 0.647152 | 8_1:-7360716 | Msa1175800:CDS |
| GGATGGAAGGTATAGATGCG+AGG | 0.649737 | 8_1:-7360590 | Msa1175800:CDS |
| AAGGCGACAGGATGTTGCCG+AGG | 0.666759 | 8_1:-7362550 | Msa1175800:CDS |
| TGTTCACGCGTTGAGTAAAG+GGG | 0.668617 | 8_1:-7362608 | Msa1175800:CDS |
| CATCGGTGAAGGAATTCCAG+TGG | 0.679391 | 8_1:-7362467 | Msa1175800:CDS |
| AGAAGAACAGCAGCAACAGG+TGG | 0.688242 | 8_1:+7364234 | None:intergenic |
| CGAAATCAACAGCATCCTCG+AGG | 0.691090 | 8_1:+7360692 | None:intergenic |
| GAAAATTGATGAGGTCCTCG+AGG | 0.693520 | 8_1:-7360707 | Msa1175800:CDS |
| AAAGAACACAACGTGCTCGG+TGG | 0.701061 | 8_1:-7362499 | Msa1175800:CDS |
| GGATGTTGCCGAGGTCAGGG+TGG | 0.715163 | 8_1:-7362541 | Msa1175800:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATGAAAAATTAATGATAAA+GGG | + | chr8_1:7360709-7360728 | None:intergenic | 10.0% |
| !! | AAATGAAAAATTAATGATAA+AGG | + | chr8_1:7360710-7360729 | None:intergenic | 10.0% |
| !!! | AACTTTTAAAGTTATAATTT+CGG | - | chr8_1:7363568-7363587 | Msa1175800:intron | 10.0% |
| !!! | AACTTTTAAAGTTATAATTT+CGG | - | chr8_1:7363568-7363587 | Msa1175800:intron | 10.0% |
| !!! | AATATTAATGTTTTTGTTGT+TGG | - | chr8_1:7361280-7361299 | Msa1175800:intron | 15.0% |
| !!! | ATATTAATGTTTTTGTTGTT+GGG | - | chr8_1:7361281-7361300 | Msa1175800:intron | 15.0% |
| !! | ATTAGTGATTTATGATTTAT+GGG | - | chr8_1:7361347-7361366 | Msa1175800:intron | 15.0% |
| !!! | ATAATTGATTTTGACATAAT+TGG | - | chr8_1:7361552-7361571 | Msa1175800:intron | 15.0% |
| !!! | TTTTAGTTCTAATTTGAAAT+TGG | - | chr8_1:7361595-7361614 | Msa1175800:intron | 15.0% |
| !!! | TAATTTGAAATTGGAAATTT+TGG | - | chr8_1:7361604-7361623 | Msa1175800:intron | 15.0% |
| !!! | AATTTGAAATTGGAAATTTT+GGG | - | chr8_1:7361605-7361624 | Msa1175800:intron | 15.0% |
| !! | TTGAACAAAAAAAAAAATTG+AGG | + | chr8_1:7361656-7361675 | None:intergenic | 15.0% |
| !! | GTATGATTAATGAAAATAAA+TGG | + | chr8_1:7361748-7361767 | None:intergenic | 15.0% |
| !! | TAAACAGTAATTCATTTAAT+CGG | + | chr8_1:7363115-7363134 | None:intergenic | 15.0% |
| !! | AAACATATGATTATTAACTT+AGG | + | chr8_1:7363707-7363726 | None:intergenic | 15.0% |
| !! | ATGAATCAGAAATTAATGTA+AGG | + | chr8_1:7360348-7360367 | None:intergenic | 20.0% |
| !!! | TGTTTTGTTTTTTAAGAATG+TGG | + | chr8_1:7360420-7360439 | None:intergenic | 20.0% |
| !! | CATTAGTGATTTATGATTTA+TGG | - | chr8_1:7361346-7361365 | Msa1175800:intron | 20.0% |
| !!! | TTTTGTGTTATATGTTCAAT+TGG | - | chr8_1:7361377-7361396 | Msa1175800:intron | 20.0% |
| !!! | GGTTTTCAATTGTAAAAAAA+AGG | - | chr8_1:7361456-7361475 | Msa1175800:intron | 20.0% |
| !!! | AGGCTTAAAATCAATTTTAA+AGG | + | chr8_1:7361636-7361655 | None:intergenic | 20.0% |
| !!! | TGCAAATTGATTTTGTTTAA+AGG | + | chr8_1:7361683-7361702 | None:intergenic | 20.0% |
| !! | AAATAAAACAAAAACAAAGC+AGG | + | chr8_1:7361770-7361789 | None:intergenic | 20.0% |
| !!! | ATACTTTTTATGCTTTGAAA+AGG | - | chr8_1:7362017-7362036 | Msa1175800:intron | 20.0% |
| !! | AAACTGAATATAACTGTAAA+AGG | + | chr8_1:7362988-7363007 | None:intergenic | 20.0% |
| !! | TGAGAAAAATATACAACAAA+AGG | + | chr8_1:7363065-7363084 | None:intergenic | 20.0% |
| !! | AAACAGTAATTCATTTAATC+GGG | + | chr8_1:7363114-7363133 | None:intergenic | 20.0% |
| !!! | TTTTTCTTCTCTAAGTATTT+TGG | - | chr8_1:7363241-7363260 | Msa1175800:intron | 20.0% |
| !!! | AATATATTTTGTAAAACCCT+TGG | + | chr8_1:7363308-7363327 | None:intergenic | 20.0% |
| !! | TCAATCTTTGAATACATATA+TGG | - | chr8_1:7363438-7363457 | Msa1175800:intron | 20.0% |
| !! | CAATCTTTGAATACATATAT+GGG | - | chr8_1:7363439-7363458 | Msa1175800:intron | 20.0% |
| !!! | AACGGTTTTTATAAAAATCT+TGG | + | chr8_1:7363980-7363999 | None:intergenic | 20.0% |
| !!! | GTTTTCATATAAGCTATAAA+CGG | + | chr8_1:7363998-7364017 | None:intergenic | 20.0% |
| !!! | TACATGATACATTTTCTATT+TGG | - | chr8_1:7364058-7364077 | Msa1175800:intron | 20.0% |
| !! | TTATTATTGTTTGTGAACTT+AGG | - | chr8_1:7364511-7364530 | Msa1175800:five_prime_UTR | 20.0% |
| ! | GTCATAGACAATTAAAACAT+AGG | - | chr8_1:7360256-7360275 | Msa1175800:three_prime_UTR | 25.0% |
| ! | AGAAATTAATGTAAGGAATG+GGG | + | chr8_1:7360341-7360360 | None:intergenic | 25.0% |
| ! | CAGAAATTAATGTAAGGAAT+GGG | + | chr8_1:7360342-7360361 | None:intergenic | 25.0% |
| ! | TCAGAAATTAATGTAAGGAA+TGG | + | chr8_1:7360343-7360362 | None:intergenic | 25.0% |
| ! | TTTAAGAATGTGGTTATGAA+AGG | + | chr8_1:7360410-7360429 | None:intergenic | 25.0% |
| ! | CTTAAAAAACAAAACATCTC+TGG | - | chr8_1:7360424-7360443 | Msa1175800:three_prime_UTR | 25.0% |
| !!! | TATTTATTGATTCTCACTTG+TGG | - | chr8_1:7360759-7360778 | Msa1175800:CDS | 25.0% |
| !!! | ATTTATTGATTCTCACTTGT+GGG | - | chr8_1:7360760-7360779 | Msa1175800:CDS | 25.0% |
| ! | AAAGTTGAATTGAATCATGT+TGG | - | chr8_1:7360972-7360991 | Msa1175800:intron | 25.0% |
| ! | AAGTTGAATTGAATCATGTT+GGG | - | chr8_1:7360973-7360992 | Msa1175800:intron | 25.0% |
| ! | AAAATGACACATACACATAT+TGG | - | chr8_1:7361137-7361156 | Msa1175800:intron | 25.0% |
| ! | AAAGCTGAATTGAATCATTT+GGG | - | chr8_1:7361231-7361250 | Msa1175800:intron | 25.0% |
| !!! | TGTAAAAAAAAGGTCTTGTT+TGG | - | chr8_1:7361466-7361485 | Msa1175800:intron | 25.0% |
| !!! | TTCCATTTTTAGTGTATGAT+TGG | - | chr8_1:7361490-7361509 | Msa1175800:intron | 25.0% |
| ! | ATCCAATCATACACTAAAAA+TGG | + | chr8_1:7361495-7361514 | None:intergenic | 25.0% |
| !! | TGAAAAGGAATTTTTCTCTT+AGG | - | chr8_1:7362032-7362051 | Msa1175800:intron | 25.0% |
| ! | ATTAAAATAAATGCTCACCA+GGG | + | chr8_1:7362865-7362884 | None:intergenic | 25.0% |
| ! | TATTAAAATAAATGCTCACC+AGG | + | chr8_1:7362866-7362885 | None:intergenic | 25.0% |
| !! | TTGATGTTCTTTTGCATTTA+TGG | - | chr8_1:7362928-7362947 | Msa1175800:intron | 25.0% |
| !! | TGATGTTCTTTTGCATTTAT+GGG | - | chr8_1:7362929-7362948 | Msa1175800:intron | 25.0% |
| ! | AAAAGAAAATCGTATTTGCT+TGG | + | chr8_1:7363204-7363223 | None:intergenic | 25.0% |
| !!! | TTCTCTAAGTATTTTGGAAA+AGG | - | chr8_1:7363247-7363266 | Msa1175800:intron | 25.0% |
| ! | AAATGCTAAAATTACGCATT+TGG | + | chr8_1:7363493-7363512 | None:intergenic | 25.0% |
| !! | TATAGACTTTTATCTCATGA+GGG | - | chr8_1:7363801-7363820 | Msa1175800:intron | 25.0% |
| ! | AATAGACAAGAAAATTGATG+AGG | - | chr8_1:7364178-7364197 | Msa1175800:intron | 25.0% |
| GAAATTAATGTAAGGAATGG+GGG | + | chr8_1:7360340-7360359 | None:intergenic | 30.0% | |
| ATGTGGTTATGAAAGGAAAA+TGG | + | chr8_1:7360403-7360422 | None:intergenic | 30.0% | |
| !!! | ACATCTCTGGTTTTTTTCTT+TGG | - | chr8_1:7360437-7360456 | Msa1175800:three_prime_UTR | 30.0% |
| ATGATAAAGGGTTACCAAAT+TGG | + | chr8_1:7360697-7360716 | None:intergenic | 30.0% | |
| !!! | TGTATGTTGATTCGCAATTT+TGG | - | chr8_1:7361059-7361078 | Msa1175800:intron | 30.0% |
| !!! | GTATGTTGATTCGCAATTTT+GGG | - | chr8_1:7361060-7361079 | Msa1175800:intron | 30.0% |
| ! | TCATTTTCTCAAATTTCACC+CGG | + | chr8_1:7361124-7361143 | None:intergenic | 30.0% |
| GAAAGCTGAATTGAATCATT+TGG | - | chr8_1:7361230-7361249 | Msa1175800:intron | 30.0% | |
| ! | TGAATTGAATCATTTGGGAT+TGG | - | chr8_1:7361236-7361255 | Msa1175800:intron | 30.0% |
| ! | GAATTGAATCATTTGGGATT+GGG | - | chr8_1:7361237-7361256 | Msa1175800:intron | 30.0% |
| !!! | TAGTTTTGTTGTGCTTTCTT+AGG | - | chr8_1:7361425-7361444 | Msa1175800:intron | 30.0% |
| ! | TGTATGATTGGATTCACTTT+TGG | - | chr8_1:7361502-7361521 | Msa1175800:intron | 30.0% |
| TTGTACTGTGTTGTAAATAG+CGG | - | chr8_1:7361795-7361814 | Msa1175800:intron | 30.0% | |
| !!! | CTTAGGCTGTTATTTTTATC+TGG | - | chr8_1:7362049-7362068 | Msa1175800:intron | 30.0% |
| AGCTTATTACTAAAGAGGAA+GGG | - | chr8_1:7362084-7362103 | Msa1175800:CDS | 30.0% | |
| CTAATACCATGTCTTCATAA+AGG | + | chr8_1:7362115-7362134 | None:intergenic | 30.0% | |
| CTTTATGAAGACATGGTATT+AGG | - | chr8_1:7362113-7362132 | Msa1175800:CDS | 30.0% | |
| AATGTGCTGAGATGTATTAT+AGG | - | chr8_1:7362153-7362172 | Msa1175800:CDS | 30.0% | |
| ATGTGCTGAGATGTATTATA+GGG | - | chr8_1:7362154-7362173 | Msa1175800:CDS | 30.0% | |
| TATTATAGGGGGAAAATGTT+TGG | - | chr8_1:7362167-7362186 | Msa1175800:CDS | 30.0% | |
| GAAATTACCAATTGTGTTTG+TGG | - | chr8_1:7362592-7362611 | Msa1175800:CDS | 30.0% | |
| ! | GATGTTCTTTTGCATTTATG+GGG | - | chr8_1:7362930-7362949 | Msa1175800:intron | 30.0% |
| ! | ATGTTCTTTTGCATTTATGG+GGG | - | chr8_1:7362931-7362950 | Msa1175800:intron | 30.0% |
| ! | AAGTTATTCTAAGGAAGCTT+GGG | + | chr8_1:7363091-7363110 | None:intergenic | 30.0% |
| TTAATCGGGAAGTTATTCTA+AGG | + | chr8_1:7363100-7363119 | None:intergenic | 30.0% | |
| ! | TCTTTTACTTTATTGCTACC+AGG | - | chr8_1:7363218-7363237 | Msa1175800:intron | 30.0% |
| ATACTTAGAGAAGAAAAACC+TGG | + | chr8_1:7363239-7363258 | None:intergenic | 30.0% | |
| CTCATGAGATAAAAGTCTAT+AGG | + | chr8_1:7363802-7363821 | None:intergenic | 30.0% | |
| ! | CTATAGACTTTTATCTCATG+AGG | - | chr8_1:7363800-7363819 | Msa1175800:intron | 30.0% |
| ! | ATAGACTTTTATCTCATGAG+GGG | - | chr8_1:7363802-7363821 | Msa1175800:intron | 30.0% |
| TCAAATAAGACAATCCAAAC+AGG | + | chr8_1:7363854-7363873 | None:intergenic | 30.0% | |
| TATTTCTTCAATGCAGTGAT+GGG | + | chr8_1:7364116-7364135 | None:intergenic | 30.0% | |
| ATATTTCTTCAATGCAGTGA+TGG | + | chr8_1:7364117-7364136 | None:intergenic | 30.0% | |
| ! | AATTCCAAAACCTTTTGGAT+CGG | + | chr8_1:7364279-7364298 | None:intergenic | 30.0% |
| ATCAGCATACTTTGTTCTTT+AGG | - | chr8_1:7364461-7364480 | Msa1175800:five_prime_UTR | 30.0% | |
| GACAATCTTCAAAGTTTAAG+TGG | - | chr8_1:7364544-7364563 | Msa1175800:five_prime_UTR | 30.0% | |
| ! | AATCGTCTTGTGTGTTTTGT+GGG | + | chr8_1:7360286-7360305 | None:intergenic | 35.0% |
| ! | TAATCGTCTTGTGTGTTTTG+TGG | + | chr8_1:7360287-7360306 | None:intergenic | 35.0% |
| GGAAAATGGAACACAAAATG+AGG | + | chr8_1:7360389-7360408 | None:intergenic | 35.0% | |
| ! | AAGAAGAGAGTGTGAGAATT+TGG | + | chr8_1:7360496-7360515 | None:intergenic | 35.0% |
| CTTGGAGTTGAAGAATTGAT+AGG | + | chr8_1:7360525-7360544 | None:intergenic | 35.0% | |
| AGTGGTTTATCATTGGATCT+TGG | + | chr8_1:7360543-7360562 | None:intergenic | 35.0% | |
| GAAAGAGAGTGGTTTATCAT+TGG | + | chr8_1:7360550-7360569 | None:intergenic | 35.0% | |
| CAAGAAAAGAGGAAGAAGAA+GGG | + | chr8_1:7360596-7360615 | None:intergenic | 35.0% | |
| TCTTCAACAAACCTCCAATT+TGG | - | chr8_1:7360680-7360699 | Msa1175800:CDS | 35.0% | |
| ATAAAGGGTTACCAAATTGG+AGG | + | chr8_1:7360694-7360713 | None:intergenic | 35.0% | |
| TGAATTGAATCATGTTGGGT+TGG | - | chr8_1:7360977-7360996 | Msa1175800:intron | 35.0% | |
| GAATTGAATCATGTTGGGTT+GGG | - | chr8_1:7360978-7360997 | Msa1175800:intron | 35.0% | |
| CACATACACATATTGGACAT+CGG | - | chr8_1:7361144-7361163 | Msa1175800:intron | 35.0% | |
| !! | ATGATTGGATTCACTTTTGG+AGG | - | chr8_1:7361505-7361524 | Msa1175800:intron | 35.0% |
| TTGTCAACTAGATGCTATAG+CGG | - | chr8_1:7361892-7361911 | Msa1175800:intron | 35.0% | |
| CTTGCAGCTTATTACTAAAG+AGG | - | chr8_1:7362079-7362098 | Msa1175800:CDS | 35.0% | |
| CAGCTTATTACTAAAGAGGA+AGG | - | chr8_1:7362083-7362102 | Msa1175800:CDS | 35.0% | |
| GTTAGTCCTTTATGAAGACA+TGG | - | chr8_1:7362106-7362125 | Msa1175800:CDS | 35.0% | |
| ATGAAGACATGGTATTAGGA+AGG | - | chr8_1:7362117-7362136 | Msa1175800:CDS | 35.0% | |
| TGTGCTGAGATGTATTATAG+GGG | - | chr8_1:7362155-7362174 | Msa1175800:CDS | 35.0% | |
| CCTCAAATACTTGATGAATC+CGG | + | chr8_1:7362231-7362250 | None:intergenic | 35.0% | |
| TTCCATGAAGTACAAAAGAG+AGG | - | chr8_1:7362466-7362485 | Msa1175800:CDS | 35.0% | |
| AAATGCCAATGTCACGTTAT+CGG | + | chr8_1:7362510-7362529 | None:intergenic | 35.0% | |
| ! | AACGTGACATTGGCATTTTT+CGG | - | chr8_1:7362512-7362531 | Msa1175800:CDS | 35.0% |
| GGAGATGGAACTTGTAATAA+TGG | - | chr8_1:7362533-7362552 | Msa1175800:CDS | 35.0% | |
| ATTACCAATTGTGTTTGTGG+TGG | - | chr8_1:7362595-7362614 | Msa1175800:CDS | 35.0% | |
| ! | TTTTCCACCACAAACACAAT+TGG | + | chr8_1:7362602-7362621 | None:intergenic | 35.0% |
| ! | TTGTGGTGGAAAACAATTTG+TGG | - | chr8_1:7362609-7362628 | Msa1175800:CDS | 35.0% |
| ! | TGTGGTGGAAAACAATTTGT+GGG | - | chr8_1:7362610-7362629 | Msa1175800:CDS | 35.0% |
| AAAACAATTTGTGGGCCATT+GGG | - | chr8_1:7362618-7362637 | Msa1175800:CDS | 35.0% | |
| TGTGAGACTTACAGATTTAG+AGG | - | chr8_1:7362806-7362825 | Msa1175800:CDS | 35.0% | |
| CAGATTTAGAGGACATTCAT+TGG | - | chr8_1:7362817-7362836 | Msa1175800:intron | 35.0% | |
| ! | CAAGAATTCTAAAGGAAGCT+AGG | + | chr8_1:7363014-7363033 | None:intergenic | 35.0% |
| AGCGTCTTCAAGAATTCTAA+AGG | + | chr8_1:7363022-7363041 | None:intergenic | 35.0% | |
| ! | GAAGTTATTCTAAGGAAGCT+TGG | + | chr8_1:7363092-7363111 | None:intergenic | 35.0% |
| GAAAATCGTATTTGCTTGGT+TGG | + | chr8_1:7363200-7363219 | None:intergenic | 35.0% | |
| TTTGTAAAACCCTTGGAACA+AGG | + | chr8_1:7363301-7363320 | None:intergenic | 35.0% | |
| CTTAGGATGACATCTACAAA+GGG | + | chr8_1:7363690-7363709 | None:intergenic | 35.0% | |
| ACTTAGGATGACATCTACAA+AGG | + | chr8_1:7363691-7363710 | None:intergenic | 35.0% | |
| TAAATACTCGTGAGACTGAT+TGG | - | chr8_1:7363889-7363908 | Msa1175800:intron | 35.0% | |
| AAATACTCGTGAGACTGATT+GGG | - | chr8_1:7363890-7363909 | Msa1175800:intron | 35.0% | |
| !!! | GATCCAAAAGGTTTTGGAAT+TGG | - | chr8_1:7364278-7364297 | Msa1175800:CDS | 35.0% |
| !!! | AAAAGGTTTTGGAATTGGAC+CGG | - | chr8_1:7364283-7364302 | Msa1175800:CDS | 35.0% |
| GCATACTTTGTTCTTTAGGT+TGG | - | chr8_1:7364465-7364484 | Msa1175800:five_prime_UTR | 35.0% | |
| !! | TGTTCTTTAGGTTGGAAGTT+TGG | - | chr8_1:7364473-7364492 | Msa1175800:five_prime_UTR | 35.0% |
| ATACTTGTGCCATGAGAATA+TGG | - | chr8_1:7364625-7364644 | Msa1175800:five_prime_UTR | 35.0% | |
| CAATCTACTCCATATTCTCA+TGG | + | chr8_1:7364637-7364656 | None:intergenic | 35.0% | |
| CATGAGAATATGGAGTAGAT+TGG | - | chr8_1:7364635-7364654 | Msa1175800:five_prime_UTR | 35.0% | |
| ATTAATGTAAGGAATGGGGG+CGG | + | chr8_1:7360337-7360356 | None:intergenic | 40.0% | |
| AGATCAGAAGAGAAAGAGAG+TGG | + | chr8_1:7360561-7360580 | None:intergenic | 40.0% | |
| CCAAGAAAAGAGGAAGAAGA+AGG | + | chr8_1:7360597-7360616 | None:intergenic | 40.0% | |
| ! | CCTTCTTCTTCCTCTTTTCT+TGG | - | chr8_1:7360594-7360613 | Msa1175800:CDS | 40.0% |
| CTGAGTAGATCCAAGAAAAG+AGG | + | chr8_1:7360607-7360626 | None:intergenic | 40.0% | |
| ACACTTTCCATCAGATGTGT+CGG | - | chr8_1:7360907-7360926 | Msa1175800:intron | 40.0% | |
| ACGTCTTCAATCAGATGTGT+CGG | - | chr8_1:7361169-7361188 | Msa1175800:intron | 40.0% | |
| GTGCTTTCTTAGGTCTTCTT+TGG | - | chr8_1:7361435-7361454 | Msa1175800:intron | 40.0% | |
| CTCAGCACATTTGTCTTCAA+AGG | + | chr8_1:7362144-7362163 | None:intergenic | 40.0% | |
| GTGCTGAGATGTATTATAGG+GGG | - | chr8_1:7362156-7362175 | Msa1175800:CDS | 40.0% | |
| !! | GGTTTTGTCCACTTGTACAA+TGG | - | chr8_1:7362188-7362207 | Msa1175800:CDS | 40.0% |
| CTTCTTGTCCATTGTACAAG+TGG | + | chr8_1:7362199-7362218 | None:intergenic | 40.0% | |
| CCGGATTCATCAAGTATTTG+AGG | - | chr8_1:7362228-7362247 | Msa1175800:CDS | 40.0% | |
| ATGTTCACGCGTTGAGTAAA+GGG | - | chr8_1:7362285-7362304 | Msa1175800:CDS | 40.0% | |
| GAAGTGATGAGTGAACTCTT+CGG | - | chr8_1:7362320-7362339 | Msa1175800:CDS | 40.0% | |
| TCAAAAGAACACAACGTGCT+CGG | - | chr8_1:7362392-7362411 | Msa1175800:CDS | 40.0% | |
| ! | CACCTCTCTTTTGTACTTCA+TGG | + | chr8_1:7362471-7362490 | None:intergenic | 40.0% |
| !! | CAAAAGAGAGGTGTTGAATC+AGG | - | chr8_1:7362478-7362497 | Msa1175800:CDS | 40.0% |
| TGATTCCGATAACGTGACAT+TGG | - | chr8_1:7362502-7362521 | Msa1175800:CDS | 40.0% | |
| !! | ACATTGGCATTTTTCGGAGA+TGG | - | chr8_1:7362518-7362537 | Msa1175800:CDS | 40.0% |
| GTTCTTTGAGTGTCTGAACA+TGG | - | chr8_1:7362559-7362578 | Msa1175800:CDS | 40.0% | |
| GAAAACAATTTGTGGGCCAT+TGG | - | chr8_1:7362617-7362636 | Msa1175800:CDS | 40.0% | |
| CATTGGGATGTCACATCTTA+GGG | - | chr8_1:7362634-7362653 | Msa1175800:CDS | 40.0% | |
| AGACCCTCAGATATGGAAAA+AGG | - | chr8_1:7362664-7362683 | Msa1175800:CDS | 40.0% | |
| GACCCTCAGATATGGAAAAA+GGG | - | chr8_1:7362665-7362684 | Msa1175800:CDS | 40.0% | |
| ! | GACCCTTTTTCCATATCTGA+GGG | + | chr8_1:7362670-7362689 | None:intergenic | 40.0% |
| !!! | TGTTTTGAAGGTCAGAGAAG+TGG | - | chr8_1:7362730-7362749 | Msa1175800:CDS | 40.0% |
| GTCTCACATTCCACTAAAGT+TGG | + | chr8_1:7362794-7362813 | None:intergenic | 40.0% | |
| AACAAAAGGCAATGACCAAG+AGG | + | chr8_1:7363051-7363070 | None:intergenic | 40.0% | |
| ! | GGTTGGTATCATCAATGATG+TGG | + | chr8_1:7363183-7363202 | None:intergenic | 40.0% |
| AACCAATCAACCTTGTTCCA+AGG | - | chr8_1:7363288-7363307 | Msa1175800:intron | 40.0% | |
| ACCAATCAACCTTGTTCCAA+GGG | - | chr8_1:7363289-7363308 | Msa1175800:intron | 40.0% | |
| !! | CTTGACTTCAGTTGTTTTGC+TGG | - | chr8_1:7363415-7363434 | Msa1175800:intron | 40.0% |
| ! | AAGCCACATCTTTTTGTTCG+CGG | - | chr8_1:7363827-7363846 | Msa1175800:intron | 40.0% |
| TTTCTATTTGGCAGCTGAGA+AGG | - | chr8_1:7364070-7364089 | Msa1175800:intron | 40.0% | |
| AGCCACTGAACAAGAATTGA+AGG | - | chr8_1:7364154-7364173 | Msa1175800:intron | 40.0% | |
| TGCCTTCAATTCTTGTTCAG+TGG | + | chr8_1:7364159-7364178 | None:intergenic | 40.0% | |
| ! | GGTCCAATTCCAAAACCTTT+TGG | + | chr8_1:7364284-7364303 | None:intergenic | 40.0% |
| GAGGATCCAAAGTTTACTGA+AGG | - | chr8_1:7364323-7364342 | Msa1175800:CDS | 40.0% | |
| GATACAAAAATAAAGCGCGC+AGG | + | chr8_1:7364371-7364390 | None:intergenic | 40.0% | |
| GAATACAAGGGAGTGAGACA+TGG | + | chr8_1:7360313-7360332 | None:intergenic | 45.0% | |
| TGAAGAAGAACAGCAGCAAC+AGG | + | chr8_1:7360666-7360685 | None:intergenic | 45.0% | |
| ACTGAGTCTTAGAGTGACAC+TGG | - | chr8_1:7360805-7360824 | Msa1175800:CDS | 45.0% | |
| ! | AGATGTGTCGATGTCAGACA+TGG | - | chr8_1:7360864-7360883 | Msa1175800:intron | 45.0% |
| AAGTGTATCCGATGTCCAAC+AGG | + | chr8_1:7360893-7360912 | None:intergenic | 45.0% | |
| TGTAACACCGACACATCTGA+TGG | + | chr8_1:7360917-7360936 | None:intergenic | 45.0% | |
| !! | TATGAAGCACTGACACACAC+TGG | - | chr8_1:7361084-7361103 | Msa1175800:intron | 45.0% |
| TAGATGCTATAGCGGTGTGA+AGG | - | chr8_1:7361900-7361919 | Msa1175800:intron | 45.0% | |
| GTTATAGCCTTCTCGTGTAG+CGG | - | chr8_1:7361925-7361944 | Msa1175800:intron | 45.0% | |
| TAAGATTCCGCTACACGAGA+AGG | + | chr8_1:7361935-7361954 | None:intergenic | 45.0% | |
| GTGTACTCAATCGTGGATAG+AGG | + | chr8_1:7361973-7361992 | None:intergenic | 45.0% | |
| CAAAGCAGTGTACTCAATCG+TGG | + | chr8_1:7361980-7361999 | None:intergenic | 45.0% | |
| ! | GGACAAGAAGCTGTTTCAAC+CGG | - | chr8_1:7362209-7362228 | Msa1175800:CDS | 45.0% |
| CTTTACTCAACGCGTGAACA+TGG | + | chr8_1:7362286-7362305 | None:intergenic | 45.0% | |
| CATGTTCACGCGTTGAGTAA+AGG | - | chr8_1:7362284-7362303 | Msa1175800:CDS | 45.0% | |
| TGTTCACGCGTTGAGTAAAG+GGG | - | chr8_1:7362286-7362305 | Msa1175800:CDS | 45.0% | |
| CACTCATCACTTCTCGAGAA+GGG | + | chr8_1:7362313-7362332 | None:intergenic | 45.0% | |
| TCACTCATCACTTCTCGAGA+AGG | + | chr8_1:7362314-7362333 | None:intergenic | 45.0% | |
| GATGAGTGAACTCTTCGGTA+AGG | - | chr8_1:7362325-7362344 | Msa1175800:CDS | 45.0% | |
| !! | CTCGGTGGTTTTGCATTCAT+CGG | - | chr8_1:7362410-7362429 | Msa1175800:CDS | 45.0% |
| ! | GGTTTTGCATTCATCGGTGA+AGG | - | chr8_1:7362416-7362435 | Msa1175800:CDS | 45.0% |
| CTTCATGGAAAATGCAGCAC+CGG | + | chr8_1:7362456-7362475 | None:intergenic | 45.0% | |
| CCTAAGATGTGACATCCCAA+TGG | + | chr8_1:7362636-7362655 | None:intergenic | 45.0% | |
| CCATTGGGATGTCACATCTT+AGG | - | chr8_1:7362633-7362652 | Msa1175800:CDS | 45.0% | |
| CAACTTCAGACCCTCAGATA+TGG | - | chr8_1:7362657-7362676 | Msa1175800:CDS | 45.0% | |
| ! | GGACCCTTTTTCCATATCTG+AGG | + | chr8_1:7362671-7362690 | None:intergenic | 45.0% |
| TGGAAAAAGGGTCCAGCATT+CGG | - | chr8_1:7362677-7362696 | Msa1175800:CDS | 45.0% | |
| !! | CGATGGGATGGATGTTTTGA+AGG | - | chr8_1:7362718-7362737 | Msa1175800:CDS | 45.0% |
| AGGAGAAGGACCAACTTTAG+TGG | - | chr8_1:7362781-7362800 | Msa1175800:CDS | 45.0% | |
| GAAGACGCTAAACTTCCTCT+TGG | - | chr8_1:7363033-7363052 | Msa1175800:intron | 45.0% | |
| ! | ACCCTTGGAACAAGGTTGAT+TGG | + | chr8_1:7363293-7363312 | None:intergenic | 45.0% |
| CAGTCTGAATAGTTAGAGCG+TGG | - | chr8_1:7363332-7363351 | Msa1175800:intron | 45.0% | |
| ACTGTTCTGCAGTCAACAAC+TGG | + | chr8_1:7363377-7363396 | None:intergenic | 45.0% | |
| TGATACTTCTAGCGCATCGT+TGG | - | chr8_1:7363596-7363615 | Msa1175800:intron | 45.0% | |
| ! | TTTTTGTTCGCGGTCCTGTT+TGG | - | chr8_1:7363837-7363856 | Msa1175800:intron | 45.0% |
| AGACTGATTGGGAGAGCTTA+TGG | - | chr8_1:7363901-7363920 | Msa1175800:intron | 45.0% | |
| AGAAGGAACACTATGCTGGT+AGG | - | chr8_1:7364087-7364106 | Msa1175800:intron | 45.0% | |
| GAAGGAACACTATGCTGGTA+GGG | - | chr8_1:7364088-7364107 | Msa1175800:intron | 45.0% | |
| GAAAATTGATGAGGTCCTCG+AGG | - | chr8_1:7364187-7364206 | Msa1175800:intron | 45.0% | |
| ! | CGAAGACATTCTCTAGAAGC+TGG | + | chr8_1:7364256-7364275 | None:intergenic | 45.0% |
| AATGTCTTCGCCGATCCAAA+AGG | - | chr8_1:7364266-7364285 | Msa1175800:CDS | 45.0% | |
| ! | TTCGCCGATCCAAAAGGTTT+TGG | - | chr8_1:7364272-7364291 | Msa1175800:CDS | 45.0% |
| TCGCATCTATACCTTCCATC+CGG | + | chr8_1:7364305-7364324 | None:intergenic | 45.0% | |
| GCAGTGCCTTCAGTAAACTT+TGG | + | chr8_1:7364332-7364351 | None:intergenic | 45.0% | |
| AATGGGGGCGGAGAATACAA+GGG | + | chr8_1:7360325-7360344 | None:intergenic | 50.0% | |
| ! | CAGCAACAGGTGGTGATGAA+CGG | + | chr8_1:7360653-7360672 | None:intergenic | 50.0% |
| AGAAGAACAGCAGCAACAGG+TGG | + | chr8_1:7360663-7360682 | None:intergenic | 50.0% | |
| TGTCAGACATGGACACCTGT+TGG | - | chr8_1:7360875-7360894 | Msa1175800:intron | 50.0% | |
| CATGGACACCTGTTGGACAT+CGG | - | chr8_1:7360882-7360901 | Msa1175800:intron | 50.0% | |
| ACTGGACATGAGAGTGACAC+CGG | - | chr8_1:7361102-7361121 | Msa1175800:intron | 50.0% | |
| AAAGAACACAACGTGCTCGG+TGG | - | chr8_1:7362395-7362414 | Msa1175800:CDS | 50.0% | |
| CATCGGTGAAGGAATTCCAG+TGG | - | chr8_1:7362427-7362446 | Msa1175800:CDS | 50.0% | |
| ! | GTCTGAACATGGCTGCTTTG+TGG | - | chr8_1:7362570-7362589 | Msa1175800:CDS | 50.0% |
| ATCCCATCGACATGAACACC+CGG | + | chr8_1:7362707-7362726 | None:intergenic | 50.0% | |
| GCAATTGACAGGGCTAGAAG+AGG | - | chr8_1:7362761-7362780 | Msa1175800:CDS | 50.0% | |
| CCAGGGTTACGAAGTTCATC+AGG | + | chr8_1:7362848-7362867 | None:intergenic | 50.0% | |
| CCTGATGAACTTCGTAACCC+TGG | - | chr8_1:7362845-7362864 | Msa1175800:intron | 50.0% | |
| GTTGACTGCAGAACAGTGAC+TGG | - | chr8_1:7363380-7363399 | Msa1175800:intron | 50.0% | |
| GGACCGCGAACAAAAAGATG+TGG | + | chr8_1:7363833-7363852 | None:intergenic | 50.0% | |
| GCTGAGAAGGAACACTATGC+TGG | - | chr8_1:7364083-7364102 | Msa1175800:intron | 50.0% | |
| CGAAATCAACAGCATCCTCG+AGG | + | chr8_1:7364205-7364224 | None:intergenic | 50.0% | |
| !!! | GGTTTTGGAATTGGACCGGA+TGG | - | chr8_1:7364287-7364306 | Msa1175800:CDS | 50.0% |
| TTGGAATTGGACCGGATGGA+AGG | - | chr8_1:7364291-7364310 | Msa1175800:CDS | 50.0% | |
| ! | GGATGGAAGGTATAGATGCG+AGG | - | chr8_1:7364304-7364323 | Msa1175800:CDS | 50.0% |
| GAATGGGGGCGGAGAATACA+AGG | + | chr8_1:7360326-7360345 | None:intergenic | 55.0% | |
| !! | GGGCTATGAAGCACTGACAC+TGG | - | chr8_1:7360780-7360799 | Msa1175800:CDS | 55.0% |
| CTGGACATGAGAGTGACACC+GGG | - | chr8_1:7361103-7361122 | Msa1175800:intron | 55.0% | |
| GAACTCTTCGGTAAGGCGAC+AGG | - | chr8_1:7362332-7362351 | Msa1175800:CDS | 55.0% | |
| ACAGGATGTTGCCGAGGTCA+GGG | - | chr8_1:7362350-7362369 | Msa1175800:CDS | 55.0% | |
| GCATTGAACCACCCTGACCT+CGG | + | chr8_1:7362364-7362383 | None:intergenic | 55.0% | |
| GAAGGAATTCCAGTGGCCAC+CGG | - | chr8_1:7362434-7362453 | Msa1175800:CDS | 55.0% | |
| ! | CATGGAAAATGCAGCACCGG+TGG | + | chr8_1:7362453-7362472 | None:intergenic | 55.0% |
| ATGCCGGGTGTTCATGTCGA+TGG | - | chr8_1:7362701-7362720 | Msa1175800:CDS | 55.0% | |
| TGCCGGGTGTTCATGTCGAT+GGG | - | chr8_1:7362702-7362721 | Msa1175800:CDS | 55.0% | |
| GGGTGTTCATGTCGATGGGA+TGG | - | chr8_1:7362706-7362725 | Msa1175800:CDS | 55.0% | |
| GAAGGTCAGAGAAGTGGCGA+AGG | - | chr8_1:7362736-7362755 | Msa1175800:CDS | 55.0% | |
| TGGCGAAGGAGGCAATTGAC+AGG | - | chr8_1:7362750-7362769 | Msa1175800:CDS | 55.0% | |
| GGCGAAGGAGGCAATTGACA+GGG | - | chr8_1:7362751-7362770 | Msa1175800:CDS | 55.0% | |
| GACAGGGCTAGAAGAGGAGA+AGG | - | chr8_1:7362767-7362786 | Msa1175800:CDS | 55.0% | |
| TCTAGAAGCTGGCTGCGAAG+TGG | + | chr8_1:7364245-7364264 | None:intergenic | 55.0% | |
| AAGGCGACAGGATGTTGCCG+AGG | - | chr8_1:7362344-7362363 | Msa1175800:CDS | 60.0% | |
| GACAGGATGTTGCCGAGGTC+AGG | - | chr8_1:7362349-7362368 | Msa1175800:CDS | 60.0% | |
| GGGTCCAGCATTCGGAATGC+CGG | - | chr8_1:7362685-7362704 | Msa1175800:CDS | 60.0% | |
| GGTCCAGCATTCGGAATGCC+GGG | - | chr8_1:7362686-7362705 | Msa1175800:CDS | 60.0% | |
| ACACCCGGCATTCCGAATGC+TGG | + | chr8_1:7362692-7362711 | None:intergenic | 60.0% | |
| GGTCAGAGAAGTGGCGAAGG+AGG | - | chr8_1:7362739-7362758 | Msa1175800:CDS | 60.0% | |
| GGATGTTGCCGAGGTCAGGG+TGG | - | chr8_1:7362353-7362372 | Msa1175800:CDS | 65.0% | |
| !! | AATGCAGCACCGGTGGCCAC+TGG | + | chr8_1:7362446-7362465 | None:intergenic | 65.0% |
| GCTGGCTGCGAAGTGGTGCA+GGG | + | chr8_1:7364238-7364257 | None:intergenic | 65.0% | |
| AGCTGGCTGCGAAGTGGTGC+AGG | + | chr8_1:7364239-7364258 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_1 | gene | 7360252 | 7364664 | 7360252 | ID=Msa1175800;Name=Msa1175800 |
| chr8_1 | mRNA | 7360252 | 7364664 | 7360252 | ID=Msa1175800-mRNA-1;Parent=Msa1175800;Name=Msa1175800-mRNA-1;_AED=0.00;_eAED=0.00;_QI=225|1|1|1|1|1|3|303|427 |
| chr8_1 | exon | 7360252 | 7360832 | 7360252 | ID=Msa1175800-mRNA-1:exon:2636;Parent=Msa1175800-mRNA-1 |
| chr8_1 | exon | 7362050 | 7362830 | 7362050 | ID=Msa1175800-mRNA-1:exon:2635;Parent=Msa1175800-mRNA-1 |
| chr8_1 | exon | 7364215 | 7364664 | 7364215 | ID=Msa1175800-mRNA-1:exon:2634;Parent=Msa1175800-mRNA-1 |
| chr8_1 | five_prime_UTR | 7364440 | 7364664 | 7364440 | ID=Msa1175800-mRNA-1:five_prime_utr;Parent=Msa1175800-mRNA-1 |
| chr8_1 | CDS | 7364215 | 7364439 | 7364215 | ID=Msa1175800-mRNA-1:cds;Parent=Msa1175800-mRNA-1 |
| chr8_1 | CDS | 7362050 | 7362830 | 7362050 | ID=Msa1175800-mRNA-1:cds;Parent=Msa1175800-mRNA-1 |
| chr8_1 | CDS | 7360555 | 7360832 | 7360555 | ID=Msa1175800-mRNA-1:cds;Parent=Msa1175800-mRNA-1 |
| chr8_1 | three_prime_UTR | 7360252 | 7360554 | 7360252 | ID=Msa1175800-mRNA-1:three_prime_utr;Parent=Msa1175800-mRNA-1 |
| Gene Sequence |
| Protein sequence |
