AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1175820

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1175820 MtrunA17_Chr8g0345941 90.663 664 14 2 1 664 1 616 0.0 1226
Msa1175820 MtrunA17_Chr1g0189131 67.732 626 150 4 40 664 34 608 0.0 842
Msa1175820 MtrunA17_Chr3g0126911 38.336 553 272 16 83 608 134 644 1.55e-107 339
Msa1175820 MtrunA17_Chr6g0453261 39.265 517 263 11 90 598 267 740 1.48e-106 340
Msa1175820 MtrunA17_Chr4g0051911 28.442 552 276 21 89 598 481 955 2.61e-47 179
Msa1175820 MtrunA17_Chr2g0288461 28.889 540 247 19 90 598 658 1091 3.19e-47 179
Msa1175820 MtrunA17_Chr5g0411441 23.356 441 274 16 89 505 190 590 8.75e-22 100
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1175820 AT1G32900.1 66.066 666 168 7 1 664 1 610 0.0 837
Msa1175820 AT3G01180.1 40.076 529 266 11 90 610 301 786 7.88e-109 347
Msa1175820 AT5G24300.2 38.139 548 279 15 81 608 133 640 1.32e-106 337
Msa1175820 AT5G24300.1 38.139 548 279 15 81 608 133 640 1.32e-106 337
Msa1175820 AT1G11720.2 27.632 532 263 15 90 598 646 1078 1.37e-49 187
Msa1175820 AT1G11720.1 27.632 532 263 15 90 598 594 1026 1.56e-49 187
Msa1175820 AT4G18240.1 28.675 551 276 19 89 598 541 1015 5.37e-48 182

Find 169 sgRNAs with CRISPR-Local

Find 326 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAACATCTTCCTTAATAAAT+TGG 0.113002 8_1:-7384016 None:intergenic
TTCATAAAGGGCACTGATTT+TGG 0.139777 8_1:-7380604 None:intergenic
TCCAATTCCACTCCTTTATC+TGG 0.155027 8_1:-7383595 None:intergenic
TTCATCATTCTTTAGGCTAA+TGG 0.214147 8_1:+7382073 Msa1175820:intron
CTCAATCTCTTGATGTTTCA+TGG 0.239536 8_1:+7385558 Msa1175820:three_prime_UTR
AACATCTTCCTTAATAAATT+GGG 0.263135 8_1:-7384015 None:intergenic
AAAACTACCAACTGCATGTT+TGG 0.289477 8_1:-7385098 None:intergenic
AGCCATTCCCCAATTTATTA+AGG 0.296673 8_1:+7384007 Msa1175820:CDS
CTTCGCCGAACTGGTGTTAC+TGG 0.300119 8_1:+7383625 Msa1175820:CDS
ACCAGTCAATTGGCATATTT+AGG 0.302867 8_1:+7383123 Msa1175820:CDS
GGAGGAAGTGCTGCTAAGTT+TGG 0.303189 8_1:+7385453 Msa1175820:CDS
CTGCTAAGTTTGGGAGTTCC+TGG 0.315078 8_1:+7385463 Msa1175820:CDS
ACAAAGGCCCTTGCAGTCTA+TGG 0.324992 8_1:+7384868 Msa1175820:CDS
GCAACTCCTCTAGCCTTGTC+AGG 0.335829 8_1:-7384220 None:intergenic
AGCTCATTCGACTTCATAGA+TGG 0.344129 8_1:+7383372 Msa1175820:CDS
CCAAGCAGAAGTTGGATTGC+AGG 0.347384 8_1:+7383911 Msa1175820:CDS
TGGAGCAAAACTGGTGGTTT+AGG 0.348494 8_1:+7381519 Msa1175820:CDS
GTTGAACTAATTAAGCTTCA+AGG 0.357647 8_1:-7380683 None:intergenic
TCTGAGTCCATTATGTGTAT+TGG 0.365017 8_1:-7381340 None:intergenic
GTATGGCTCAAGATCTTTCA+TGG 0.374372 8_1:+7384923 Msa1175820:CDS
TTAGTGATGTTCATTCATAA+AGG 0.375163 8_1:-7380617 None:intergenic
ACTAGTTCTTGAGCATAGTA+TGG 0.376634 8_1:-7383565 None:intergenic
ATAAGGAAGAGTTATTATAC+TGG 0.376637 8_1:-7385871 None:intergenic
ATTCCTCTCATTGCTTTCAT+TGG 0.382733 8_1:+7383945 Msa1175820:CDS
CCCAGATAAAGGAGTGGAAT+TGG 0.385440 8_1:+7383594 Msa1175820:CDS
CTCATAGAACCAAGTCTCAT+TGG 0.386243 8_1:-7381312 None:intergenic
TCCTTGTGTGCTTCATTACC+TGG 0.386445 8_1:+7380713 Msa1175820:five_prime_UTR
ATTTCTTCTCCATCAATTCC+AGG 0.392626 8_1:-7385493 None:intergenic
AGTAAAGCCAATACACATAA+TGG 0.393974 8_1:+7381333 Msa1175820:CDS
GTTGGTCCATGGAGCAAAAC+TGG 0.399161 8_1:+7381510 Msa1175820:CDS
TTAATCTGAACAGGCAGCTC+TGG 0.399734 8_1:+7382892 Msa1175820:intron
TGAAATATTATTGTGTTGCT+TGG 0.403707 8_1:-7380653 None:intergenic
GTACCTATTGTTGCCTCAAC+AGG 0.404320 8_1:+7384620 Msa1175820:CDS
CGTAAGCTTACTGCTAATAC+TGG 0.405362 8_1:-7381564 None:intergenic
CCACAAATTATGATACCTTT+CGG 0.406739 8_1:-7381459 None:intergenic
CCAATTCCACTCCTTTATCT+GGG 0.409765 8_1:-7383594 None:intergenic
GGCAGTGAACCTGGAATTGA+TGG 0.411509 8_1:+7385484 Msa1175820:CDS
ATTAGGGACCTGCTAAGAAA+TGG 0.411659 8_1:+7385431 Msa1175820:intron
TAGTGATGTTCATTCATAAA+GGG 0.412225 8_1:-7380616 None:intergenic
GTTTGGATTGACGGTGAGTT+TGG 0.413468 8_1:-7385081 None:intergenic
GGAGTTCCTGGCAGTGAACC+TGG 0.416485 8_1:+7385475 Msa1175820:CDS
TATGACATTTCTTAGGGAAC+AGG 0.416560 8_1:+7384151 Msa1175820:intron
GATCGTCCGAAATTAAAATC+TGG 0.416878 8_1:+7384459 Msa1175820:CDS
ACTTCCTCCCATTTCTTAGC+AGG 0.418506 8_1:-7385439 None:intergenic
CTAGTGTCAGGCCCAGATAA+AGG 0.418565 8_1:+7383583 Msa1175820:CDS
TTGATCATTTCTGCAAAAGC+TGG 0.419191 8_1:-7384895 None:intergenic
TGCCTCAACAGGTGGATTAG+TGG 0.426815 8_1:+7384631 Msa1175820:CDS
TGATTGGAGTGAGCAAGTTA+AGG 0.427242 8_1:-7385779 None:intergenic
TGCATGCAGTCAGTCCAATC+TGG 0.429644 8_1:+7384437 Msa1175820:intron
TGGTAGGCTTGAAGAGCAAA+AGG 0.430212 8_1:+7383965 Msa1175820:CDS
TCACCCTATATTTCTTGAAA+AGG 0.432618 8_1:+7382363 Msa1175820:CDS
TTCTTTCATTGCTTTAAAAG+AGG 0.435407 8_1:+7382319 Msa1175820:CDS
ACTTATAATCACTCCATCAC+TGG 0.436274 8_1:-7385590 None:intergenic
GGTGTTACTGGTATTGTAAA+TGG 0.437797 8_1:+7383637 Msa1175820:CDS
AAATCTATGTACCAGTCAAT+TGG 0.440536 8_1:+7383113 Msa1175820:CDS
CCACCTGTTGAGGCAACAAT+AGG 0.440655 8_1:-7384623 None:intergenic
CAACTGCATGTTTGGATTGA+CGG 0.441497 8_1:-7385090 None:intergenic
CCACAAGGCTCAAATCTACT+AGG 0.441652 8_1:-7384301 None:intergenic
GGTGGTTTAGGAGATGTTCT+TGG 0.442318 8_1:+7381531 Msa1175820:CDS
CCGAAAGGTATCATAATTTG+TGG 0.448883 8_1:+7381459 Msa1175820:CDS
CGCTGTGGATCCGGCTGATG+TGG 0.450888 8_1:+7384825 Msa1175820:CDS
CTCTCATTGCTTTCATTGGT+AGG 0.451242 8_1:+7383949 Msa1175820:CDS
TTAGCACACATGATAATTGC+AGG 0.452499 8_1:+7384259 Msa1175820:CDS
GAGGAAGTGCTGCTAAGTTT+GGG 0.452501 8_1:+7385454 Msa1175820:CDS
TGCAATTATCATGTGTGCTA+AGG 0.453551 8_1:-7384257 None:intergenic
ACAGTTAAAGAAGGTTTCAC+TGG 0.454630 8_1:+7384656 Msa1175820:CDS
TTCCTTAATAAATTGGGGAA+TGG 0.461203 8_1:-7384009 None:intergenic
TATTATACTGGCTTATTCAC+AGG 0.463997 8_1:-7385859 None:intergenic
TTAGTGTGACGCTGTGGATC+CGG 0.465682 8_1:+7384816 Msa1175820:intron
AGCTTCCACGTGAACAGCAT+TGG 0.466438 8_1:-7380576 None:intergenic
TTTCAAGTAGCATGAGATAA+GGG 0.470650 8_1:-7383093 None:intergenic
CCAAGGCAGATTTGCATTCG+CGG 0.473556 8_1:+7383314 Msa1175820:CDS
TAAGGAGTTGAATGATAAGA+AGG 0.475041 8_1:-7385761 None:intergenic
TAATTTCGGACGATCCAGAT+TGG 0.476658 8_1:-7384451 None:intergenic
TTTGACTCACATGAGATAGT+TGG 0.479694 8_1:-7381282 None:intergenic
GACAACATTCTTCGCCGAAC+TGG 0.480449 8_1:+7383616 Msa1175820:CDS
GTTATGTATTTGTCAGTGGA+TGG 0.482006 8_1:-7383682 None:intergenic
TGTTTATTACAGGTAAAAGT+AGG 0.483085 8_1:+7382274 Msa1175820:intron
AAAATCAACTGGATGAAAGC+TGG 0.487870 8_1:+7383508 Msa1175820:CDS
AAATGAAGGCAGTGAAATCA+AGG 0.490356 8_1:+7381406 Msa1175820:CDS
ACGAGCAATAAATATTTCTC+AGG 0.491007 8_1:+7382938 Msa1175820:CDS
GAGGTGATATAATGATAGAT+TGG 0.492422 8_1:-7385802 None:intergenic
TTAGACCTGTGTATCTAACT+TGG 0.492706 8_1:+7385618 Msa1175820:three_prime_UTR
TGGTAATCATCTCCTGTGGC+AGG 0.493390 8_1:-7382510 None:intergenic
TCAATTCCAGGTTCACTGCC+AGG 0.495114 8_1:-7385481 None:intergenic
AGGTTTCACTGGATTTCAGA+TGG 0.496834 8_1:+7384667 Msa1175820:CDS
TAAATTGGTCGGGAAGATTG+AGG 0.498384 8_1:-7383347 None:intergenic
GCAGTGAAATCAAGGAGAAA+AGG 0.499059 8_1:+7381414 Msa1175820:CDS
AGGTATGTTAAACCAGTTGT+TGG 0.500872 8_1:+7383481 Msa1175820:intron
TAGAACTCCAATCAAAATGA+AGG 0.504054 8_1:+7381392 Msa1175820:CDS
AGAAATGATCAAGAATTGTA+TGG 0.505664 8_1:+7384906 Msa1175820:CDS
TAAAACGTAGTTGATTGTCT+TGG 0.510188 8_1:-7382530 None:intergenic
TTAGGGACCTGCTAAGAAAT+GGG 0.510223 8_1:+7385432 Msa1175820:intron
CCTAGTAGATTTGAGCCTTG+TGG 0.515224 8_1:+7384301 Msa1175820:CDS
GGCATGAATTTGATCTTTGT+AGG 0.518686 8_1:+7381480 Msa1175820:CDS
GCAATTATCATGTGTGCTAA+GGG 0.520362 8_1:-7384256 None:intergenic
CAGCTACAAGCTATGCGCTA+TGG 0.521085 8_1:+7384331 Msa1175820:CDS
TGGAGAAGAAATTGCTCCAC+AGG 0.521835 8_1:+7385504 Msa1175820:CDS
GAAGCACTCCAAGCAGAAGT+TGG 0.523874 8_1:+7383903 Msa1175820:CDS
CCTGCAATCCAACTTCTGCT+TGG 0.524547 8_1:-7383911 None:intergenic
ATGGAACTTCATCCCAGTGA+TGG 0.525163 8_1:+7385577 Msa1175820:three_prime_UTR
ATTTCAAGTAGCATGAGATA+AGG 0.525167 8_1:-7383094 None:intergenic
GCTATTGCATCCACATCAGC+CGG 0.525934 8_1:-7384835 None:intergenic
CAAGAGATTGAGACTCATCA+TGG 0.529016 8_1:-7385547 None:intergenic
AGAAATTGCTCCACAGGCAA+AGG 0.537424 8_1:+7385510 Msa1175820:CDS
CCGCGAATGCAAATCTGCCT+TGG 0.538259 8_1:-7383314 None:intergenic
CAATACCAGTAACACCAGTT+CGG 0.539892 8_1:-7383630 None:intergenic
AGTGATGGAGTGATTATAAG+TGG 0.540335 8_1:+7385592 Msa1175820:three_prime_UTR
ACATCTTCCTTAATAAATTG+GGG 0.540556 8_1:-7384014 None:intergenic
TATAATGATAGATTGGTGAT+TGG 0.541670 8_1:-7385795 None:intergenic
GGCAGCTCTGGAAGCAGCAA+GGG 0.542199 8_1:+7382904 Msa1175820:intron
TTAGTGGACACAGTTAAAGA+AGG 0.542661 8_1:+7384647 Msa1175820:CDS
GTTATAGAACCTGGCAGAAG+AGG 0.545535 8_1:-7382554 None:intergenic
CAACTCCTCTAGCCTTGTCA+GGG 0.550707 8_1:-7384219 None:intergenic
CCTATTGTTGCCTCAACAGG+TGG 0.554792 8_1:+7384623 Msa1175820:CDS
TCATCTACTCAGGTATTGGA+AGG 0.555487 8_1:+7383864 Msa1175820:intron
TATGCTCAAGAACTAGTGTC+AGG 0.557035 8_1:+7383571 Msa1175820:CDS
GGTTTAGGAGATGTTCTTGG+TGG 0.559091 8_1:+7381534 Msa1175820:CDS
AAAATTTATGGACCTGCCAC+AGG 0.560744 8_1:+7382498 Msa1175820:CDS
AAATATTTCTCAGGACCATA+CGG 0.561634 8_1:+7382947 Msa1175820:CDS
GGTTTCACTGGATTTCAGAT+GGG 0.561885 8_1:+7384668 Msa1175820:CDS
AGAAAGAATGTTATTCCGAA+AGG 0.562439 8_1:+7381444 Msa1175820:CDS
ATCTTTGTAGGAACAGAGGT+TGG 0.562444 8_1:+7381492 Msa1175820:CDS
TCCTAAATATGCCAATTGAC+TGG 0.562495 8_1:-7383124 None:intergenic
TAGGAACAGAGGTTGGTCCA+TGG 0.568810 8_1:+7381499 Msa1175820:CDS
CTTATAATCACTCCATCACT+GGG 0.568917 8_1:-7385589 None:intergenic
GGCTCAAGATCTTTCATGGA+AGG 0.571527 8_1:+7384927 Msa1175820:CDS
GGTAGGCTTGAAGAGCAAAA+GGG 0.573584 8_1:+7383966 Msa1175820:CDS
CTGGAGTTCCATAGACTGCA+AGG 0.574492 8_1:-7384876 None:intergenic
CATCGCTAACGATTGGCACA+CGG 0.583798 8_1:+7383070 Msa1175820:CDS
GGATACAAGTGTAACAATTG+AGG 0.586203 8_1:+7382147 Msa1175820:CDS
TACTGGTATTGTAAATGGCA+TGG 0.587387 8_1:+7383642 Msa1175820:CDS
TTATTGAACTTGAAGGTTTG+GGG 0.588398 8_1:+7382462 Msa1175820:intron
GACAGTTATGTATTTGTCAG+TGG 0.592989 8_1:-7383686 None:intergenic
TATTGAACTTGAAGGTTTGG+GGG 0.593353 8_1:+7382463 Msa1175820:intron
AATGTCCAAGTTAGATACAC+AGG 0.596393 8_1:-7385623 None:intergenic
TGCCTTGGTATGCAATGTTG+TGG 0.598925 8_1:-7383299 None:intergenic
GCTCATTCGACTTCATAGAT+GGG 0.599348 8_1:+7383373 Msa1175820:CDS
ATGATCAATACAAAGATGCG+TGG 0.603382 8_1:+7382125 Msa1175820:CDS
AGGCAGCTCTGGAAGCAGCA+AGG 0.605957 8_1:+7382903 Msa1175820:intron
AAGCTTACTGCTAATACTGG+TGG 0.606831 8_1:-7381561 None:intergenic
TTTGATCTTTGTAGGAACAG+AGG 0.611738 8_1:+7381488 Msa1175820:CDS
TTGATCATAACGTGGAGCGA+TGG 0.612220 8_1:-7382110 None:intergenic
ACCAGGTAATGAAGCACACA+AGG 0.614057 8_1:-7380714 None:intergenic
TTTATGCTAAGGGTGTGGAT+CGG 0.615318 8_1:+7385730 Msa1175820:three_prime_UTR
TGCAGTCAGCTACACATGAA+CGG 0.617677 8_1:-7384501 None:intergenic
TGATCAATACAAAGATGCGT+GGG 0.619053 8_1:+7382126 Msa1175820:CDS
TTTACTTTAGTGTGACGCTG+TGG 0.621041 8_1:+7384810 Msa1175820:intron
CGTCAATCCAAACATGCAGT+TGG 0.625297 8_1:+7385091 Msa1175820:CDS
GTCCACTAATCCACCTGTTG+AGG 0.626982 8_1:-7384633 None:intergenic
AAAACAGCACCAATGAGACT+TGG 0.627221 8_1:+7381303 Msa1175820:CDS
TTCACAGGCGAAAATCTCAA+AGG 0.627743 8_1:-7385844 None:intergenic
GTCTTGGTAATCATCTCCTG+TGG 0.628679 8_1:-7382514 None:intergenic
ATGGCATGGATGTTCAAGAG+TGG 0.637982 8_1:+7383656 Msa1175820:CDS
TGGAGTTCCATAGACTGCAA+GGG 0.639149 8_1:-7384875 None:intergenic
TCTATCCAATGCTGTTCACG+TGG 0.640016 8_1:+7380571 Msa1175820:five_prime_UTR
TCATACCCTGACAAGGCTAG+AGG 0.643178 8_1:+7384214 Msa1175820:CDS
CATCTACTCAGGTATTGGAA+GGG 0.648092 8_1:+7383865 Msa1175820:intron
AGATAGTTGGTACATTGACA+TGG 0.665294 8_1:-7381269 None:intergenic
GTCAGGCCCAGATAAAGGAG+TGG 0.669932 8_1:+7383588 Msa1175820:CDS
TGTAGCTGAATGAGACCACA+AGG 0.671420 8_1:-7384316 None:intergenic
GGTCCATGGAGCAAAACTGG+TGG 0.674393 8_1:+7381513 Msa1175820:CDS
CTACCAATGAAAGCAATGAG+AGG 0.675115 8_1:-7383948 None:intergenic
AATAGCAAAGACTGTCACAA+AGG 0.677740 8_1:+7384852 Msa1175820:CDS
ATCCACAACATTGCATACCA+AGG 0.683894 8_1:+7383297 Msa1175820:CDS
TGAGATATCATACCCTGACA+AGG 0.685797 8_1:+7384207 Msa1175820:CDS
ATGGACTAACAGTTAAAACC+CGG 0.694472 8_1:-7383546 None:intergenic
GGGACCTGCTAAGAAATGGG+AGG 0.700664 8_1:+7385435 Msa1175820:intron
TCTTTGTATTGATCATAACG+TGG 0.711776 8_1:-7382118 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AGTTTTGTATTTTTTTTAAA+CGG + chr8_1:7385685-7385704 Msa1175820:three_prime_UTR 10.0%
!! TTTGGTAAAAATAAAGTTTA+AGG - chr8_1:7380777-7380796 None:intergenic 15.0%
!! TGACAGTATAAAAATTTATA+CGG + chr8_1:7381673-7381692 Msa1175820:intron 15.0%
!! AATATAAACATACAATATGA+TGG - chr8_1:7382821-7382840 None:intergenic 15.0%
!! TCATTATTATATACTTACTA+GGG - chr8_1:7384051-7384070 None:intergenic 15.0%
!! ATCATTATTATATACTTACT+AGG - chr8_1:7384052-7384071 None:intergenic 15.0%
!! TAGTAAGTATATAATAATGA+TGG + chr8_1:7384051-7384070 Msa1175820:intron 15.0%
!!! TATAATAATGATGGAAAAAA+AGG + chr8_1:7384060-7384079 Msa1175820:intron 15.0%
!! ATGTCATAACATATTTAAAT+AGG - chr8_1:7384139-7384158 None:intergenic 15.0%
!! TTTAAGAAACAATAAGATAA+TGG - chr8_1:7384787-7384806 None:intergenic 15.0%
!!! TTATTTTTACCAAAGTTTAG+TGG + chr8_1:7380783-7380802 Msa1175820:intron 20.0%
!! ATTTGTTCAACTTGATTAAA+TGG - chr8_1:7380864-7380883 None:intergenic 20.0%
!! TGTAAAAAAGTTCTTCAAAA+AGG - chr8_1:7381824-7381843 None:intergenic 20.0%
!! AAAACTGGAACAAAAATTTA+TGG + chr8_1:7382486-7382505 Msa1175820:CDS 20.0%
!! AAAAATGACAAAGGAAAAAT+AGG - chr8_1:7382859-7382878 None:intergenic 20.0%
!! AAGGAAAAAAAAAATGACAA+AGG - chr8_1:7382868-7382887 None:intergenic 20.0%
!!! TTTGTCATTTTTTTTTTCCT+TGG + chr8_1:7382867-7382886 Msa1175820:intron 20.0%
!! GTAACACTGATAAATATTAT+TGG + chr8_1:7383187-7383206 Msa1175820:intron 20.0%
!!! TTTTTCGTGAATGATAAAAT+AGG - chr8_1:7383220-7383239 None:intergenic 20.0%
!! TACAAAAAACAACCTAATAA+TGG - chr8_1:7383278-7383297 None:intergenic 20.0%
!! AACATCTTCCTTAATAAATT+GGG - chr8_1:7384018-7384037 None:intergenic 20.0%
!! AATATGTTATGACATTTCTT+AGG + chr8_1:7384144-7384163 Msa1175820:intron 20.0%
!! ATATGTTATGACATTTCTTA+GGG + chr8_1:7384145-7384164 Msa1175820:intron 20.0%
!! ACATATTATTAGAAGTCTTA+TGG - chr8_1:7384577-7384596 None:intergenic 20.0%
!!! TTACATTTTTTACTTCAACT+AGG + chr8_1:7384598-7384617 Msa1175820:intron 20.0%
!!! TGTATCCTAATTTTTTTCAT+AGG - chr8_1:7385257-7385276 None:intergenic 20.0%
!!! AAACTTTTAGTTTATTGCAA+AGG + chr8_1:7385312-7385331 Msa1175820:intron 20.0%
!!! TGAATTTTGTTTTGGAATTA+GGG + chr8_1:7385415-7385434 Msa1175820:intron 20.0%
!!! ATTGTCAATTTTTTATGCTA+AGG + chr8_1:7385719-7385738 Msa1175820:three_prime_UTR 20.0%
!!! TTGTCAATTTTTTATGCTAA+GGG + chr8_1:7385720-7385739 Msa1175820:three_prime_UTR 20.0%
! TAGTGATGTTCATTCATAAA+GGG - chr8_1:7380619-7380638 None:intergenic 25.0%
! TTAGTGATGTTCATTCATAA+AGG - chr8_1:7380620-7380639 None:intergenic 25.0%
!! TGAAATATTATTGTGTTGCT+TGG - chr8_1:7380656-7380675 None:intergenic 25.0%
!! TAAGGCATCAAATTTGAAAT+TGG - chr8_1:7380759-7380778 None:intergenic 25.0%
! TAATTAACACCACTAAACTT+TGG - chr8_1:7380795-7380814 None:intergenic 25.0%
! CAATTCAAATGTCAGTTATT+AGG + chr8_1:7380917-7380936 Msa1175820:intron 25.0%
! ATATCTTTGTAGCTTGAATT+TGG - chr8_1:7381079-7381098 None:intergenic 25.0%
! TATTTGAGCAATAGAGAATT+TGG + chr8_1:7381096-7381115 Msa1175820:intron 25.0%
! AACTTGAAATCTAACTCTAT+TGG + chr8_1:7381167-7381186 Msa1175820:intron 25.0%
!!! GTTTTTTTCAGCATAAAAGA+TGG + chr8_1:7381197-7381216 Msa1175820:intron 25.0%
!! AGATATCTTGCATATGTTTT+AGG - chr8_1:7381778-7381797 None:intergenic 25.0%
! TCTACGTTGTAAATTATGAT+TGG + chr8_1:7381795-7381814 Msa1175820:intron 25.0%
!!! GAAGAACTTTTTTACATTGT+CGG + chr8_1:7381828-7381847 Msa1175820:intron 25.0%
! TCCAACACATTAGTTATAAT+CGG - chr8_1:7381962-7381981 None:intergenic 25.0%
! TCACTAATTCATCATTCTTT+AGG + chr8_1:7382066-7382085 Msa1175820:intron 25.0%
! TATTGTGATCTGTTTATTAC+AGG + chr8_1:7382264-7382283 Msa1175820:intron 25.0%
! TGTTTATTACAGGTAAAAGT+AGG + chr8_1:7382274-7382293 Msa1175820:intron 25.0%
!!! TTCTTTCATTGCTTTAAAAG+AGG + chr8_1:7382319-7382338 Msa1175820:CDS 25.0%
!!! TCACCTTTTCAAGAAATATA+GGG - chr8_1:7382369-7382388 None:intergenic 25.0%
! ATGATGATTATTGAACTTGA+AGG + chr8_1:7382455-7382474 Msa1175820:intron 25.0%
! ATTATTGAACTTGAAGGTTT+GGG + chr8_1:7382461-7382480 Msa1175820:intron 25.0%
!!! ACATTTTAACCAAATGGATA+TGG - chr8_1:7382579-7382598 None:intergenic 25.0%
!!! CAAAGAACATTTTAACCAAA+TGG - chr8_1:7382585-7382604 None:intergenic 25.0%
!!! GTAGCTTTTTATGTTGTTTA+AGG + chr8_1:7382621-7382640 Msa1175820:intron 25.0%
!!! TTTTTGGAAAGAATCTACAT+TGG + chr8_1:7382663-7382682 Msa1175820:intron 25.0%
!! GTAAATCAAAGTATCACATT+AGG + chr8_1:7382719-7382738 Msa1175820:intron 25.0%
! TTATGTTGTTCTAATCTTGT+AGG + chr8_1:7383461-7383480 Msa1175820:intron 25.0%
! ACATCTTCCTTAATAAATTG+GGG - chr8_1:7384017-7384036 None:intergenic 25.0%
! GAACATCTTCCTTAATAAAT+TGG - chr8_1:7384019-7384038 None:intergenic 25.0%
! ATCCTTTCTTACTTCATTAA+AGG + chr8_1:7384103-7384122 Msa1175820:intron 25.0%
! TTCCTTTAATGAAGTAAGAA+AGG - chr8_1:7384108-7384127 None:intergenic 25.0%
! TTACTACTTAATCTACCATA+TGG - chr8_1:7384758-7384777 None:intergenic 25.0%
! AGAAATGATCAAGAATTGTA+TGG + chr8_1:7384906-7384925 Msa1175820:CDS 25.0%
! AATGAAGAACTATAAACTAG+AGG - chr8_1:7385185-7385204 None:intergenic 25.0%
! TAAACTAATGTTCATGAAGA+AGG + chr8_1:7385221-7385240 Msa1175820:intron 25.0%
! GATAGCCTATGAAAAAAATT+AGG + chr8_1:7385249-7385268 Msa1175820:intron 25.0%
! CAAAACAAAATTCAGTTACT+CGG - chr8_1:7385409-7385428 None:intergenic 25.0%
!!! CTGAATTTTGTTTTGGAATT+AGG + chr8_1:7385414-7385433 Msa1175820:intron 25.0%
!! TATAATGATAGATTGGTGAT+TGG - chr8_1:7385798-7385817 None:intergenic 25.0%
! CAAAGGTAAGAATACAAAAA+TGG - chr8_1:7385830-7385849 None:intergenic 25.0%
! ATAAGGAAGAGTTATTATAC+TGG - chr8_1:7385874-7385893 None:intergenic 25.0%
GTTGAACTAATTAAGCTTCA+AGG - chr8_1:7380686-7380705 None:intergenic 30.0%
CGATTGTTGGATTAATCTAA+CGG - chr8_1:7380973-7380992 None:intergenic 30.0%
! TAAGTTCAAATGTCGATTGT+TGG - chr8_1:7380986-7381005 None:intergenic 30.0%
! TAAGAACATGGATCCTTTTA+CGG + chr8_1:7381019-7381038 Msa1175820:intron 30.0%
ACAATAATTTCACAAGTGAG+AGG + chr8_1:7381140-7381159 Msa1175820:intron 30.0%
AGTAAAGCCAATACACATAA+TGG + chr8_1:7381333-7381352 Msa1175820:CDS 30.0%
! ACTCAGAATTTTGAACTCAT+TGG + chr8_1:7381356-7381375 Msa1175820:CDS 30.0%
TAGAACTCCAATCAAAATGA+AGG + chr8_1:7381392-7381411 Msa1175820:CDS 30.0%
AGAAAGAATGTTATTCCGAA+AGG + chr8_1:7381444-7381463 Msa1175820:CDS 30.0%
CCACAAATTATGATACCTTT+CGG - chr8_1:7381462-7381481 None:intergenic 30.0%
CCAACACATTAGTTATAATC+GGG - chr8_1:7381961-7381980 None:intergenic 30.0%
AAGTGTATGTTAAAAGAGTG+TGG + chr8_1:7381982-7382001 Msa1175820:intron 30.0%
! TTGATAGCATTTCTTTGTAG+CGG + chr8_1:7382005-7382024 Msa1175820:intron 30.0%
TTCATCATTCTTTAGGCTAA+TGG + chr8_1:7382073-7382092 Msa1175820:intron 30.0%
! TCTTTGTATTGATCATAACG+TGG - chr8_1:7382121-7382140 None:intergenic 30.0%
ACAATCAAAACATATCGTCA+AGG - chr8_1:7382183-7382202 None:intergenic 30.0%
TCACCCTATATTTCTTGAAA+AGG + chr8_1:7382363-7382382 Msa1175820:CDS 30.0%
!! CTCACCTTTTCAAGAAATAT+AGG - chr8_1:7382370-7382389 None:intergenic 30.0%
GATTATTGAACTTGAAGGTT+TGG + chr8_1:7382460-7382479 Msa1175820:intron 30.0%
TTATTGAACTTGAAGGTTTG+GGG + chr8_1:7382462-7382481 Msa1175820:intron 30.0%
TAAAACGTAGTTGATTGTCT+TGG - chr8_1:7382533-7382552 None:intergenic 30.0%
GTTCTATAACCATATCCATT+TGG + chr8_1:7382567-7382586 Msa1175820:intron 30.0%
! AACTCACAGAGAGAAATTTT+TGG + chr8_1:7382647-7382666 Msa1175820:intron 30.0%
ACGAGCAATAAATATTTCTC+AGG + chr8_1:7382938-7382957 Msa1175820:CDS 30.0%
AAATATTTCTCAGGACCATA+CGG + chr8_1:7382947-7382966 Msa1175820:CDS 30.0%
!!! TGTTTTGATTTTCGTTATGC+AGG + chr8_1:7383032-7383051 Msa1175820:intron 30.0%
! TTTCAAGTAGCATGAGATAA+GGG - chr8_1:7383096-7383115 None:intergenic 30.0%
! ATTTCAAGTAGCATGAGATA+AGG - chr8_1:7383097-7383116 None:intergenic 30.0%
AAATCTATGTACCAGTCAAT+TGG + chr8_1:7383113-7383132 Msa1175820:CDS 30.0%
ATATTTAGGAATGCCAAAGT+AGG + chr8_1:7383137-7383156 Msa1175820:intron 30.0%
AATGCCAAAGTAGGTTTAAA+TGG + chr8_1:7383146-7383165 Msa1175820:intron 30.0%
AGTTCTTCAAACTTTCTTTC+TGG + chr8_1:7383246-7383265 Msa1175820:intron 30.0%
! AATGAGCTTTTAAATTGGTC+GGG - chr8_1:7383360-7383379 None:intergenic 30.0%
! GAATGAGCTTTTAAATTGGT+CGG - chr8_1:7383361-7383380 None:intergenic 30.0%
! AGTCGAATGAGCTTTTAAAT+TGG - chr8_1:7383365-7383384 None:intergenic 30.0%
! TTGATTTTTCTTCCAACAAC+TGG - chr8_1:7383496-7383515 None:intergenic 30.0%
TTGTTGGAAGAAAAATCAAC+TGG + chr8_1:7383497-7383516 Msa1175820:CDS 30.0%
TTCCTTAATAAATTGGGGAA+TGG - chr8_1:7384012-7384031 None:intergenic 30.0%
!!! GACAGTCCAGATTTTAATTT+CGG - chr8_1:7384468-7384487 None:intergenic 30.0%
! AGCTTACATTTTATGCAAGT+GGG + chr8_1:7384731-7384750 Msa1175820:intron 30.0%
TTAGTGCATGTTTAGATTGA+CGG + chr8_1:7384967-7384986 Msa1175820:intron 30.0%
! TTTTAGCAAAAGTTACCCTT+TGG - chr8_1:7385037-7385056 None:intergenic 30.0%
AACTAGAGGTTAATTCAAGT+TGG - chr8_1:7385171-7385190 None:intergenic 30.0%
CTATTTGGATAAACTTGTCA+TGG - chr8_1:7385365-7385384 None:intergenic 30.0%
CATGACAAGTTTATCCAAAT+AGG + chr8_1:7385363-7385382 Msa1175820:intron 30.0%
GGATAAATTAAGAGCCTATT+TGG - chr8_1:7385380-7385399 None:intergenic 30.0%
!! CGAGTAACTGAATTTTGTTT+TGG + chr8_1:7385407-7385426 Msa1175820:intron 30.0%
!!! AATTTTTTATGCTAAGGGTG+TGG + chr8_1:7385725-7385744 Msa1175820:three_prime_UTR 30.0%
TAAGGAGTTGAATGATAAGA+AGG - chr8_1:7385764-7385783 None:intergenic 30.0%
GAGGTGATATAATGATAGAT+TGG - chr8_1:7385805-7385824 None:intergenic 30.0%
TAAGAATACAAAAATGGACG+AGG - chr8_1:7385824-7385843 None:intergenic 30.0%
!! TATTATACTGGCTTATTCAC+AGG - chr8_1:7385862-7385881 None:intergenic 30.0%
!!! TTCATAAAGGGCACTGATTT+TGG - chr8_1:7380607-7380626 None:intergenic 35.0%
CTGTAATATACTAGCTAACC+AGG - chr8_1:7380734-7380753 None:intergenic 35.0%
TAAAGAGAGCTGTAAGAACA+TGG + chr8_1:7381007-7381026 Msa1175820:intron 35.0%
! AGATAGTTGGTACATTGACA+TGG - chr8_1:7381272-7381291 None:intergenic 35.0%
TTTGACTCACATGAGATAGT+TGG - chr8_1:7381285-7381304 None:intergenic 35.0%
TCTGAGTCCATTATGTGTAT+TGG - chr8_1:7381343-7381362 None:intergenic 35.0%
!! TTCACTGCCTTCATTTTGAT+TGG - chr8_1:7381402-7381421 None:intergenic 35.0%
AAATGAAGGCAGTGAAATCA+AGG + chr8_1:7381406-7381425 Msa1175820:CDS 35.0%
!! CCGAAAGGTATCATAATTTG+TGG + chr8_1:7381459-7381478 Msa1175820:CDS 35.0%
GGCATGAATTTGATCTTTGT+AGG + chr8_1:7381480-7381499 Msa1175820:CDS 35.0%
TTTGATCTTTGTAGGAACAG+AGG + chr8_1:7381488-7381507 Msa1175820:CDS 35.0%
CAGTATTAGCAGTAAGCTTA+CGG + chr8_1:7381565-7381584 Msa1175820:intron 35.0%
CCCGATTATAACTAATGTGT+TGG + chr8_1:7381958-7381977 Msa1175820:intron 35.0%
TTTGTAGCGGTTGACATATT+TGG + chr8_1:7382018-7382037 Msa1175820:intron 35.0%
ATGATCAATACAAAGATGCG+TGG + chr8_1:7382125-7382144 Msa1175820:CDS 35.0%
TGATCAATACAAAGATGCGT+GGG + chr8_1:7382126-7382145 Msa1175820:CDS 35.0%
GGATACAAGTGTAACAATTG+AGG + chr8_1:7382147-7382166 Msa1175820:CDS 35.0%
TATTGAACTTGAAGGTTTGG+GGG + chr8_1:7382463-7382482 Msa1175820:intron 35.0%
ATGGATATGGTTATAGAACC+TGG - chr8_1:7382566-7382585 None:intergenic 35.0%
TACGATTTATTGAGCAGCAA+CGG + chr8_1:7382687-7382706 Msa1175820:intron 35.0%
TCCTTGGAATTAATCTGAAC+AGG + chr8_1:7382883-7382902 Msa1175820:intron 35.0%
! GTATGGACTAAAGTCAGAAA+TGG + chr8_1:7382969-7382988 Msa1175820:intron 35.0%
! TCATTTTCATCGCTAACGAT+TGG + chr8_1:7383063-7383082 Msa1175820:CDS 35.0%
ACCAGTCAATTGGCATATTT+AGG + chr8_1:7383123-7383142 Msa1175820:CDS 35.0%
TCCTAAATATGCCAATTGAC+TGG - chr8_1:7383127-7383146 None:intergenic 35.0%
! GTTGCCATTTAAACCTACTT+TGG - chr8_1:7383153-7383172 None:intergenic 35.0%
! TTCTGGTTGCTACCATTATT+AGG + chr8_1:7383263-7383282 Msa1175820:intron 35.0%
AGGTATGTTAAACCAGTTGT+TGG + chr8_1:7383481-7383500 Msa1175820:intron 35.0%
AAAATCAACTGGATGAAAGC+TGG + chr8_1:7383508-7383527 Msa1175820:CDS 35.0%
!!! CTGGAATTTTAGAATCTCAC+CGG + chr8_1:7383527-7383546 Msa1175820:CDS 35.0%
!!! TGGAATTTTAGAATCTCACC+GGG + chr8_1:7383528-7383547 Msa1175820:CDS 35.0%
! ATGGACTAACAGTTAAAACC+CGG - chr8_1:7383549-7383568 None:intergenic 35.0%
! ACTAGTTCTTGAGCATAGTA+TGG - chr8_1:7383568-7383587 None:intergenic 35.0%
!! GGTGTTACTGGTATTGTAAA+TGG + chr8_1:7383637-7383656 Msa1175820:CDS 35.0%
TACTGGTATTGTAAATGGCA+TGG + chr8_1:7383642-7383661 Msa1175820:CDS 35.0%
GTTATGTATTTGTCAGTGGA+TGG - chr8_1:7383685-7383704 None:intergenic 35.0%
GACAGTTATGTATTTGTCAG+TGG - chr8_1:7383689-7383708 None:intergenic 35.0%
TGTTTCTCTAAACTGTGTCA+TGG + chr8_1:7383753-7383772 Msa1175820:intron 35.0%
TTTAACTAGCTCATCTACTC+AGG + chr8_1:7383854-7383873 Msa1175820:intron 35.0%
ATTCCTCTCATTGCTTTCAT+TGG + chr8_1:7383945-7383964 Msa1175820:CDS 35.0%
AGCCATTCCCCAATTTATTA+AGG + chr8_1:7384007-7384026 Msa1175820:CDS 35.0%
TATGACATTTCTTAGGGAAC+AGG + chr8_1:7384151-7384170 Msa1175820:intron 35.0%
TTCTTAGGGAACAGGAAAAA+AGG + chr8_1:7384159-7384178 Msa1175820:intron 35.0%
GCAATTATCATGTGTGCTAA+GGG - chr8_1:7384259-7384278 None:intergenic 35.0%
TGCAATTATCATGTGTGCTA+AGG - chr8_1:7384260-7384279 None:intergenic 35.0%
TTAGCACACATGATAATTGC+AGG + chr8_1:7384259-7384278 Msa1175820:CDS 35.0%
GATCGTCCGAAATTAAAATC+TGG + chr8_1:7384459-7384478 Msa1175820:CDS 35.0%
!! TCTGGACTGTCAATTTTGAT+TGG + chr8_1:7384477-7384496 Msa1175820:CDS 35.0%
! TTAGTGGACACAGTTAAAGA+AGG + chr8_1:7384647-7384666 Msa1175820:CDS 35.0%
ACAGTTAAAGAAGGTTTCAC+TGG + chr8_1:7384656-7384675 Msa1175820:CDS 35.0%
ATAAAATGTAAGCTGCTGGT+AGG - chr8_1:7384725-7384744 None:intergenic 35.0%
TTGCATAAAATGTAAGCTGC+TGG - chr8_1:7384729-7384748 None:intergenic 35.0%
! CAGCTTACATTTTATGCAAG+TGG + chr8_1:7384730-7384749 Msa1175820:intron 35.0%
AATAGCAAAGACTGTCACAA+AGG + chr8_1:7384852-7384871 Msa1175820:CDS 35.0%
TTGATCATTTCTGCAAAAGC+TGG - chr8_1:7384898-7384917 None:intergenic 35.0%
! TGATTTTGTTGAAGCTCCAA+AGG + chr8_1:7385018-7385037 Msa1175820:intron 35.0%
! GATTTTGTTGAAGCTCCAAA+GGG + chr8_1:7385019-7385038 Msa1175820:intron 35.0%
AAAACTACCAACTGCATGTT+TGG - chr8_1:7385101-7385120 None:intergenic 35.0%
AGTTGGAACTTAGCATAGAT+TGG - chr8_1:7385154-7385173 None:intergenic 35.0%
AATTCAGTTACTCGGTTGAT+GGG - chr8_1:7385401-7385420 None:intergenic 35.0%
AAATTCAGTTACTCGGTTGA+TGG - chr8_1:7385402-7385421 None:intergenic 35.0%
ATTTCTTCTCCATCAATTCC+AGG - chr8_1:7385496-7385515 None:intergenic 35.0%
CTCAATCTCTTGATGTTTCA+TGG + chr8_1:7385558-7385577 Msa1175820:three_prime_UTR 35.0%
CTTATAATCACTCCATCACT+GGG - chr8_1:7385592-7385611 None:intergenic 35.0%
ACTTATAATCACTCCATCAC+TGG - chr8_1:7385593-7385612 None:intergenic 35.0%
! AGTGATGGAGTGATTATAAG+TGG + chr8_1:7385592-7385611 Msa1175820:three_prime_UTR 35.0%
TTAGACCTGTGTATCTAACT+TGG + chr8_1:7385618-7385637 Msa1175820:three_prime_UTR 35.0%
AATGTCCAAGTTAGATACAC+AGG - chr8_1:7385626-7385645 None:intergenic 35.0%
AAAACAGCACCAATGAGACT+TGG + chr8_1:7381303-7381322 Msa1175820:CDS 40.0%
CTCATAGAACCAAGTCTCAT+TGG - chr8_1:7381315-7381334 None:intergenic 40.0%
GCAGTGAAATCAAGGAGAAA+AGG + chr8_1:7381414-7381433 Msa1175820:CDS 40.0%
ATCTTTGTAGGAACAGAGGT+TGG + chr8_1:7381492-7381511 Msa1175820:CDS 40.0%
AAGCTTACTGCTAATACTGG+TGG - chr8_1:7381564-7381583 None:intergenic 40.0%
CGTAAGCTTACTGCTAATAC+TGG - chr8_1:7381567-7381586 None:intergenic 40.0%
TAGCAGTAAGCTTACGGTTA+TGG + chr8_1:7381571-7381590 Msa1175820:intron 40.0%
CTGAATAATGTGAGTCTCAG+CGG - chr8_1:7381918-7381937 None:intergenic 40.0%
TGAGACTCACATTATTCAGC+AGG + chr8_1:7381919-7381938 Msa1175820:intron 40.0%
AAAGCAAAACAGCGAGCATA+TGG - chr8_1:7382416-7382435 None:intergenic 40.0%
AAAATTTATGGACCTGCCAC+AGG + chr8_1:7382498-7382517 Msa1175820:CDS 40.0%
GCCTGTTCAGATTAATTCCA+AGG - chr8_1:7382887-7382906 None:intergenic 40.0%
TGACTTTAGTCCATACCGTA+TGG - chr8_1:7382965-7382984 None:intergenic 40.0%
ATCCACAACATTGCATACCA+AGG + chr8_1:7383297-7383316 Msa1175820:CDS 40.0%
TAAATTGGTCGGGAAGATTG+AGG - chr8_1:7383350-7383369 None:intergenic 40.0%
AGCTCATTCGACTTCATAGA+TGG + chr8_1:7383372-7383391 Msa1175820:CDS 40.0%
GCTCATTCGACTTCATAGAT+GGG + chr8_1:7383373-7383392 Msa1175820:CDS 40.0%
TATGCTCAAGAACTAGTGTC+AGG + chr8_1:7383571-7383590 Msa1175820:CDS 40.0%
CCAATTCCACTCCTTTATCT+GGG - chr8_1:7383597-7383616 None:intergenic 40.0%
TCCAATTCCACTCCTTTATC+TGG - chr8_1:7383598-7383617 None:intergenic 40.0%
CAATACCAGTAACACCAGTT+CGG - chr8_1:7383633-7383652 None:intergenic 40.0%
CGACGATTCAACAGTAAGAA+CGG + chr8_1:7383714-7383733 Msa1175820:intron 40.0%
TAGCTCATCTACTCAGGTAT+TGG + chr8_1:7383860-7383879 Msa1175820:intron 40.0%
!! TCATCTACTCAGGTATTGGA+AGG + chr8_1:7383864-7383883 Msa1175820:intron 40.0%
!! CATCTACTCAGGTATTGGAA+GGG + chr8_1:7383865-7383884 Msa1175820:intron 40.0%
CTACCAATGAAAGCAATGAG+AGG - chr8_1:7383951-7383970 None:intergenic 40.0%
CTCTCATTGCTTTCATTGGT+AGG + chr8_1:7383949-7383968 Msa1175820:CDS 40.0%
GGGAACAGGAAAAAAGGAAA+TGG + chr8_1:7384165-7384184 Msa1175820:intron 40.0%
TGAGATATCATACCCTGACA+AGG + chr8_1:7384207-7384226 Msa1175820:CDS 40.0%
AGGAAAGGACTGTGTAAAGT+AGG - chr8_1:7384369-7384388 None:intergenic 40.0%
TTTACACAGTCCTTTCCTAG+CGG + chr8_1:7384371-7384390 Msa1175820:intron 40.0%
CGCTACATACAATCCAAATC+CGG - chr8_1:7384402-7384421 None:intergenic 40.0%
TAATTTCGGACGATCCAGAT+TGG - chr8_1:7384454-7384473 None:intergenic 40.0%
AGGTTTCACTGGATTTCAGA+TGG + chr8_1:7384667-7384686 Msa1175820:CDS 40.0%
GGTTTCACTGGATTTCAGAT+GGG + chr8_1:7384668-7384687 Msa1175820:CDS 40.0%
TTTATGCAAGTGGGTCCATA+TGG + chr8_1:7384740-7384759 Msa1175820:intron 40.0%
TTTACTTTAGTGTGACGCTG+TGG + chr8_1:7384810-7384829 Msa1175820:intron 40.0%
GTATGGCTCAAGATCTTTCA+TGG + chr8_1:7384923-7384942 Msa1175820:CDS 40.0%
GTTTAGATTGACGGTGTGTT+TGG + chr8_1:7384976-7384995 Msa1175820:intron 40.0%
CAACTGCATGTTTGGATTGA+CGG - chr8_1:7385093-7385112 None:intergenic 40.0%
ATTAGGGACCTGCTAAGAAA+TGG + chr8_1:7385431-7385450 Msa1175820:intron 40.0%
TTAGGGACCTGCTAAGAAAT+GGG + chr8_1:7385432-7385451 Msa1175820:intron 40.0%
CAAGAGATTGAGACTCATCA+TGG - chr8_1:7385550-7385569 None:intergenic 40.0%
! TTTATGCTAAGGGTGTGGAT+CGG + chr8_1:7385730-7385749 Msa1175820:three_prime_UTR 40.0%
TGATTGGAGTGAGCAAGTTA+AGG - chr8_1:7385782-7385801 None:intergenic 40.0%
TTCACAGGCGAAAATCTCAA+AGG - chr8_1:7385847-7385866 None:intergenic 40.0%
TCTATCCAATGCTGTTCACG+TGG + chr8_1:7380571-7380590 Msa1175820:five_prime_UTR 45.0%
TCCTTGTGTGCTTCATTACC+TGG + chr8_1:7380713-7380732 Msa1175820:five_prime_UTR 45.0%
ACCAGGTAATGAAGCACACA+AGG - chr8_1:7380717-7380736 None:intergenic 45.0%
ACGCTGCAGCATGTCTATAA+CGG + chr8_1:7381042-7381061 Msa1175820:intron 45.0%
ATGTCTATAACGGCCGTAGA+GGG + chr8_1:7381052-7381071 Msa1175820:intron 45.0%
GCTTGAATTTGGACCCTCTA+CGG - chr8_1:7381068-7381087 None:intergenic 45.0%
! AAACCACCAGTTTTGCTCCA+TGG - chr8_1:7381519-7381538 None:intergenic 45.0%
TGGAGCAAAACTGGTGGTTT+AGG + chr8_1:7381519-7381538 Msa1175820:CDS 45.0%
GGTGGTTTAGGAGATGTTCT+TGG + chr8_1:7381531-7381550 Msa1175820:CDS 45.0%
GGTTTAGGAGATGTTCTTGG+TGG + chr8_1:7381534-7381553 Msa1175820:CDS 45.0%
AATAATGTGAGTCTCAGCGG+CGG - chr8_1:7381915-7381934 None:intergenic 45.0%
TTGATCATAACGTGGAGCGA+TGG - chr8_1:7382113-7382132 None:intergenic 45.0%
TTGAAGGTTTGGGGGAAAAC+TGG + chr8_1:7382471-7382490 Msa1175820:intron 45.0%
! GTCTTGGTAATCATCTCCTG+TGG - chr8_1:7382517-7382536 None:intergenic 45.0%
GTTATAGAACCTGGCAGAAG+AGG - chr8_1:7382557-7382576 None:intergenic 45.0%
TTAATCTGAACAGGCAGCTC+TGG + chr8_1:7382892-7382911 Msa1175820:intron 45.0%
TTTCTCAGGACCATACGGTA+TGG + chr8_1:7382952-7382971 Msa1175820:intron 45.0%
TGCCTTGGTATGCAATGTTG+TGG - chr8_1:7383302-7383321 None:intergenic 45.0%
CCCAGATAAAGGAGTGGAAT+TGG + chr8_1:7383594-7383613 Msa1175820:CDS 45.0%
ATGGCATGGATGTTCAAGAG+TGG + chr8_1:7383656-7383675 Msa1175820:CDS 45.0%
TGGTAGGCTTGAAGAGCAAA+AGG + chr8_1:7383965-7383984 Msa1175820:CDS 45.0%
GGTAGGCTTGAAGAGCAAAA+GGG + chr8_1:7383966-7383985 Msa1175820:CDS 45.0%
CCACAAGGCTCAAATCTACT+AGG - chr8_1:7384304-7384323 None:intergenic 45.0%
CCTAGTAGATTTGAGCCTTG+TGG + chr8_1:7384301-7384320 Msa1175820:CDS 45.0%
TGTAGCTGAATGAGACCACA+AGG - chr8_1:7384319-7384338 None:intergenic 45.0%
! TCCTTTCCTAGCGGTTTTTC+CGG + chr8_1:7384380-7384399 Msa1175820:intron 45.0%
TGCAGTCAGCTACACATGAA+CGG - chr8_1:7384504-7384523 None:intergenic 45.0%
GTACCTATTGTTGCCTCAAC+AGG + chr8_1:7384620-7384639 Msa1175820:CDS 45.0%
TGGAGTTCCATAGACTGCAA+GGG - chr8_1:7384878-7384897 None:intergenic 45.0%
GGCTCAAGATCTTTCATGGA+AGG + chr8_1:7384927-7384946 Msa1175820:CDS 45.0%
CGGTGTGTTTGGCAAAATCA+AGG + chr8_1:7384987-7385006 Msa1175820:intron 45.0%
TTGGCAAAATCAAGGCAGCA+CGG + chr8_1:7384995-7385014 Msa1175820:intron 45.0%
GTTTGGATTGACGGTGAGTT+TGG - chr8_1:7385084-7385103 None:intergenic 45.0%
CGTCAATCCAAACATGCAGT+TGG + chr8_1:7385091-7385110 Msa1175820:CDS 45.0%
! GGTAGCTTTACACGACTAGT+AGG - chr8_1:7385133-7385152 None:intergenic 45.0%
ACTTCCTCCCATTTCTTAGC+AGG - chr8_1:7385442-7385461 None:intergenic 45.0%
!! GAGGAAGTGCTGCTAAGTTT+GGG + chr8_1:7385454-7385473 Msa1175820:CDS 45.0%
TGGAGAAGAAATTGCTCCAC+AGG + chr8_1:7385504-7385523 Msa1175820:CDS 45.0%
AGAAATTGCTCCACAGGCAA+AGG + chr8_1:7385510-7385529 Msa1175820:CDS 45.0%
ATGGAACTTCATCCCAGTGA+TGG + chr8_1:7385577-7385596 Msa1175820:three_prime_UTR 45.0%
!! TTTAATCAAAAAAATTTATA+TGG + chr8_1:7381707-7381726 Msa1175820:intron 5.0%
AGCTTCCACGTGAACAGCAT+TGG - chr8_1:7380579-7380598 None:intergenic 50.0%
CAGAGAGCTGCAGAGACATT+TGG - chr8_1:7380897-7380916 None:intergenic 50.0%
CATGTCTATAACGGCCGTAG+AGG + chr8_1:7381051-7381070 Msa1175820:intron 50.0%
! TAGGAACAGAGGTTGGTCCA+TGG + chr8_1:7381499-7381518 Msa1175820:CDS 50.0%
GTTGGTCCATGGAGCAAAAC+TGG + chr8_1:7381510-7381529 Msa1175820:CDS 50.0%
ATAATGTGAGTCTCAGCGGC+GGG - chr8_1:7381914-7381933 None:intergenic 50.0%
TGGTAATCATCTCCTGTGGC+AGG - chr8_1:7382513-7382532 None:intergenic 50.0%
!! ACGTTTTAGCCTCTTCTGCC+AGG + chr8_1:7382545-7382564 Msa1175820:CDS 50.0%
CATCGCTAACGATTGGCACA+CGG + chr8_1:7383070-7383089 Msa1175820:CDS 50.0%
CCAAGGCAGATTTGCATTCG+CGG + chr8_1:7383314-7383333 Msa1175820:CDS 50.0%
CTAGTGTCAGGCCCAGATAA+AGG + chr8_1:7383583-7383602 Msa1175820:CDS 50.0%
GACAACATTCTTCGCCGAAC+TGG + chr8_1:7383616-7383635 Msa1175820:CDS 50.0%
! GAAGCACTCCAAGCAGAAGT+TGG + chr8_1:7383903-7383922 Msa1175820:CDS 50.0%
CCTGCAATCCAACTTCTGCT+TGG - chr8_1:7383914-7383933 None:intergenic 50.0%
CCAAGCAGAAGTTGGATTGC+AGG + chr8_1:7383911-7383930 Msa1175820:CDS 50.0%
TCATACCCTGACAAGGCTAG+AGG + chr8_1:7384214-7384233 Msa1175820:CDS 50.0%
!! CAACTCCTCTAGCCTTGTCA+GGG - chr8_1:7384222-7384241 None:intergenic 50.0%
CAGCTACAAGCTATGCGCTA+TGG + chr8_1:7384331-7384350 Msa1175820:CDS 50.0%
TCCGGAAAAACCGCTAGGAA+AGG - chr8_1:7384384-7384403 None:intergenic 50.0%
CCAAATCCGGAAAAACCGCT+AGG - chr8_1:7384389-7384408 None:intergenic 50.0%
! CCTAGCGGTTTTTCCGGATT+TGG + chr8_1:7384386-7384405 Msa1175820:intron 50.0%
TGCATGCAGTCAGTCCAATC+TGG + chr8_1:7384437-7384456 Msa1175820:intron 50.0%
CCACCTGTTGAGGCAACAAT+AGG - chr8_1:7384626-7384645 None:intergenic 50.0%
CCTATTGTTGCCTCAACAGG+TGG + chr8_1:7384623-7384642 Msa1175820:CDS 50.0%
!! TGCCTCAACAGGTGGATTAG+TGG + chr8_1:7384631-7384650 Msa1175820:CDS 50.0%
GTCCACTAATCCACCTGTTG+AGG - chr8_1:7384636-7384655 None:intergenic 50.0%
TTAGTGTGACGCTGTGGATC+CGG + chr8_1:7384816-7384835 Msa1175820:intron 50.0%
GCTATTGCATCCACATCAGC+CGG - chr8_1:7384838-7384857 None:intergenic 50.0%
ACAAAGGCCCTTGCAGTCTA+TGG + chr8_1:7384868-7384887 Msa1175820:CDS 50.0%
CTGGAGTTCCATAGACTGCA+AGG - chr8_1:7384879-7384898 None:intergenic 50.0%
!! GGAGGAAGTGCTGCTAAGTT+TGG + chr8_1:7385453-7385472 Msa1175820:CDS 50.0%
CTGCTAAGTTTGGGAGTTCC+TGG + chr8_1:7385463-7385482 Msa1175820:CDS 50.0%
TCAATTCCAGGTTCACTGCC+AGG - chr8_1:7385484-7385503 None:intergenic 50.0%
GGCAGTGAACCTGGAATTGA+TGG + chr8_1:7385484-7385503 Msa1175820:CDS 50.0%
! GCAACGTTTTCCTTTGCCTG+TGG - chr8_1:7385523-7385542 None:intergenic 50.0%
CATGCTGCAGCGTCCGTAAA+AGG - chr8_1:7381035-7381054 None:intergenic 55.0%
GGTCCATGGAGCAAAACTGG+TGG + chr8_1:7381513-7381532 Msa1175820:CDS 55.0%
TAATGTGAGTCTCAGCGGCG+GGG - chr8_1:7381913-7381932 None:intergenic 55.0%
CCGCGAATGCAAATCTGCCT+TGG - chr8_1:7383317-7383336 None:intergenic 55.0%
GTCAGGCCCAGATAAAGGAG+TGG + chr8_1:7383588-7383607 Msa1175820:CDS 55.0%
!! CTTCGCCGAACTGGTGTTAC+TGG + chr8_1:7383625-7383644 Msa1175820:CDS 55.0%
!! GCAACTCCTCTAGCCTTGTC+AGG - chr8_1:7384223-7384242 None:intergenic 55.0%
GGGACCTGCTAAGAAATGGG+AGG + chr8_1:7385435-7385454 Msa1175820:intron 55.0%
!! AGGCAGCTCTGGAAGCAGCA+AGG + chr8_1:7382903-7382922 Msa1175820:intron 60.0%
!! GGCAGCTCTGGAAGCAGCAA+GGG + chr8_1:7382904-7382923 Msa1175820:intron 60.0%
GCTGACTGCATGCACTCACG+AGG + chr8_1:7384514-7384533 Msa1175820:intron 60.0%
GGAGTTCCTGGCAGTGAACC+TGG + chr8_1:7385475-7385494 Msa1175820:CDS 60.0%
CGCTGTGGATCCGGCTGATG+TGG + chr8_1:7384825-7384844 Msa1175820:CDS 65.0%
Chromosome Type Strat End Strand Name
chr8_1 gene 7380557 7385899 7380557 ID=Msa1175820;Name=Msa1175820
chr8_1 mRNA 7380557 7385899 7380557 ID=Msa1175820-mRNA-1;Parent=Msa1175820;Name=Msa1175820-mRNA-1;_AED=0.08;_eAED=0.08;_QI=186|0.73|0.87|0.87|0.93|0.87|16|347|664
chr8_1 exon 7380557 7380734 7380557 ID=Msa1175820-mRNA-1:exon:2605;Parent=Msa1175820-mRNA-1
chr8_1 exon 7381208 7381575 7381208 ID=Msa1175820-mRNA-1:exon:2606;Parent=Msa1175820-mRNA-1
chr8_1 exon 7382088 7382168 7382088 ID=Msa1175820-mRNA-1:exon:2607;Parent=Msa1175820-mRNA-1
chr8_1 exon 7382286 7382384 7382286 ID=Msa1175820-mRNA-1:exon:2608;Parent=Msa1175820-mRNA-1
chr8_1 exon 7382477 7382566 7382477 ID=Msa1175820-mRNA-1:exon:2609;Parent=Msa1175820-mRNA-1
chr8_1 exon 7382905 7382968 7382905 ID=Msa1175820-mRNA-1:exon:2610;Parent=Msa1175820-mRNA-1
chr8_1 exon 7383054 7383154 7383054 ID=Msa1175820-mRNA-1:exon:2611;Parent=Msa1175820-mRNA-1
chr8_1 exon 7383285 7383394 7383285 ID=Msa1175820-mRNA-1:exon:2612;Parent=Msa1175820-mRNA-1
chr8_1 exon 7383483 7383726 7383483 ID=Msa1175820-mRNA-1:exon:2613;Parent=Msa1175820-mRNA-1
chr8_1 exon 7383876 7384052 7383876 ID=Msa1175820-mRNA-1:exon:2614;Parent=Msa1175820-mRNA-1
chr8_1 exon 7384166 7384357 7384166 ID=Msa1175820-mRNA-1:exon:2615;Parent=Msa1175820-mRNA-1
chr8_1 exon 7384446 7384508 7384446 ID=Msa1175820-mRNA-1:exon:2616;Parent=Msa1175820-mRNA-1
chr8_1 exon 7384620 7384706 7384620 ID=Msa1175820-mRNA-1:exon:2617;Parent=Msa1175820-mRNA-1
chr8_1 exon 7384820 7384948 7384820 ID=Msa1175820-mRNA-1:exon:2618;Parent=Msa1175820-mRNA-1
chr8_1 exon 7385032 7385112 7385032 ID=Msa1175820-mRNA-1:exon:2619;Parent=Msa1175820-mRNA-1
chr8_1 exon 7385436 7385899 7385436 ID=Msa1175820-mRNA-1:exon:2620;Parent=Msa1175820-mRNA-1
chr8_1 five_prime_UTR 7380557 7380734 7380557 ID=Msa1175820-mRNA-1:five_prime_utr;Parent=Msa1175820-mRNA-1
chr8_1 five_prime_UTR 7381208 7381215 7381208 ID=Msa1175820-mRNA-1:five_prime_utr;Parent=Msa1175820-mRNA-1
chr8_1 CDS 7381216 7381575 7381216 ID=Msa1175820-mRNA-1:cds;Parent=Msa1175820-mRNA-1
chr8_1 CDS 7382088 7382168 7382088 ID=Msa1175820-mRNA-1:cds;Parent=Msa1175820-mRNA-1
chr8_1 CDS 7382286 7382384 7382286 ID=Msa1175820-mRNA-1:cds;Parent=Msa1175820-mRNA-1
chr8_1 CDS 7382477 7382566 7382477 ID=Msa1175820-mRNA-1:cds;Parent=Msa1175820-mRNA-1
chr8_1 CDS 7382905 7382968 7382905 ID=Msa1175820-mRNA-1:cds;Parent=Msa1175820-mRNA-1
chr8_1 CDS 7383054 7383154 7383054 ID=Msa1175820-mRNA-1:cds;Parent=Msa1175820-mRNA-1
chr8_1 CDS 7383285 7383394 7383285 ID=Msa1175820-mRNA-1:cds;Parent=Msa1175820-mRNA-1
chr8_1 CDS 7383483 7383726 7383483 ID=Msa1175820-mRNA-1:cds;Parent=Msa1175820-mRNA-1
chr8_1 CDS 7383876 7384052 7383876 ID=Msa1175820-mRNA-1:cds;Parent=Msa1175820-mRNA-1
chr8_1 CDS 7384166 7384357 7384166 ID=Msa1175820-mRNA-1:cds;Parent=Msa1175820-mRNA-1
chr8_1 CDS 7384446 7384508 7384446 ID=Msa1175820-mRNA-1:cds;Parent=Msa1175820-mRNA-1
chr8_1 CDS 7384620 7384706 7384620 ID=Msa1175820-mRNA-1:cds;Parent=Msa1175820-mRNA-1
chr8_1 CDS 7384820 7384948 7384820 ID=Msa1175820-mRNA-1:cds;Parent=Msa1175820-mRNA-1
chr8_1 CDS 7385032 7385112 7385032 ID=Msa1175820-mRNA-1:cds;Parent=Msa1175820-mRNA-1
chr8_1 CDS 7385436 7385552 7385436 ID=Msa1175820-mRNA-1:cds;Parent=Msa1175820-mRNA-1
chr8_1 three_prime_UTR 7385553 7385899 7385553 ID=Msa1175820-mRNA-1:three_prime_utr;Parent=Msa1175820-mRNA-1
Gene Sequence

>Msa1175820

ATGGCAACAGTGACTGCTTCAAGCAACATAGCATCAAGAAATTCTCATATCTACCATGTCAATGTACCAACTATCTCATGTGAGTCAAAAACAGCACCAATGAGACTTGGTTCTATGAGTAAAGCCAATACACATAATGGACTCAGAATTTTGAACTCATTGGATGAGCTACTAAATAGAACTCCAATCAAAATGAAGGCAGTGAAATCAAGGAGAAAAGGTCTTCAGAGAAAGAATGTTATTCCGAAAGGTATCATAATTTGTGGCATGAATTTGATCTTTGTAGGAACAGAGGTTGGTCCATGGAGCAAAACTGGTGGTTTAGGAGATGTTCTTGGTGGTCTTCCACCAGTATTAGCAGCTAATGGACACAGAGTTATGACCATCGCTCCACGTTATGATCAATACAAAGATGCGTGGGATACAAGTGTAACAATTGAGGTAAAAGTAGGAGATAGAAAAGAAAAAGTTCGCTTCTTTCATTGCTTTAAAAGAGGAGTTGATCGCGTCTTTGTAGATCACCCTATATTTCTTGAAAAGGTTTGGGGGAAAACTGGAACAAAAATTTATGGACCTGCCACAGGAGATGATTACCAAGACAATCAACTACGTTTTAGCCTCTTCTGCCAGGCAGCTCTGGAAGCAGCAAGGGTTCTGAATCTCACGAGCAATAAATATTTCTCAGGACCATACGGTGAAGATGTCATTTTCATCGCTAACGATTGGCACACGGCCCTTATCTCATGCTACTTGAAATCTATGTACCAGTCAATTGGCATATTTAGGAATGCCAAAGTTGTTTTTTGTATCCACAACATTGCATACCAAGGCAGATTTGCATTCGCGGACTATTCACTCCTCAATCTTCCCGACCAATTTAAAAGCTCATTCGACTTCATAGATGGGTATGTTAAACCAGTTGTTGGAAGAAAAATCAACTGGATGAAAGCTGGAATTTTAGAATCTCACCGGGTTTTAACTGTTAGTCCATACTATGCTCAAGAACTAGTGTCAGGCCCAGATAAAGGAGTGGAATTGGACAACATTCTTCGCCGAACTGGTGTTACTGGTATTGTAAATGGCATGGATGTTCAAGAGTGGAATCCATCCACTGACAAATACATAACTGTCAAATACGACGATTCAACAGTATTGGAAGGGAAAGCTCTTCTGAAAGAAGCACTCCAAGCAGAAGTTGGATTGCAGGTTGACAAAAATATTCCTCTCATTGCTTTCATTGGTAGGCTTGAAGAGCAAAAGGGTTCTGATATTCTTGTAGCAGCCATTCCCCAATTTATTAAGGAAGATGTTCAAATAGTAGCCCTAGGAACAGGAAAAAAGGAAATGGAAAAGCAACTTCAACAACTTGAGATATCATACCCTGACAAGGCTAGAGGAGTTGCAAAATTCAATGTTCCCTTAGCACACATGATAATTGCAGGAGCTGATTATATATTGATTCCTAGTAGATTTGAGCCTTGTGGTCTCATTCAGCTACAAGCTATGCGCTATGGAACTTCAGTCCAATCTGGATCGTCCGAAATTAAAATCTGGACTGTCAATTTTGATTGGACCGTTCATGTACCTATTGTTGCCTCAACAGGTGGATTAGTGGACACAGTTAAAGAAGGTTTCACTGGATTTCAGATGGGTTCTTTCAATGTTGAATGTGACGCTGTGGATCCGGCTGATGTGGATGCAATAGCAAAGACTGTCACAAAGGCCCTTGCAGTCTATGGAACTCCAGCTTTTGCAGAAATGATCAAGAATTGTATGGCTCAAGATCTTTCATGGAAGCTCCAAAGGGTAACTTTTGCTAAAATCACAGTGACATACTGTGATTCTGCCAAACTCACCGTCAATCCAAACATGCAGTTGGGACCTGCTAAGAAATGGGAGGAAGTGCTGCTAAGTTTGGGAGTTCCTGGCAGTGAACCTGGAATTGATGGAGAAGAAATTGCTCCACAGGCAAAGGAAAACGTTGCAACTCCATGA
Protein sequence

>Msa1175820

MATVTASSNIASRNSHIYHVNVPTISCESKTAPMRLGSMSKANTHNGLRILNSLDELLNRTPIKMKAVKSRRKGLQRKNVIPKGIIICGMNLIFVGTEVGPWSKTGGLGDVLGGLPPVLAANGHRVMTIAPRYDQYKDAWDTSVTIEVKVGDRKEKVRFFHCFKRGVDRVFVDHPIFLEKVWGKTGTKIYGPATGDDYQDNQLRFSLFCQAALEAARVLNLTSNKYFSGPYGEDVIFIANDWHTALISCYLKSMYQSIGIFRNAKVVFCIHNIAYQGRFAFADYSLLNLPDQFKSSFDFIDGYVKPVVGRKINWMKAGILESHRVLTVSPYYAQELVSGPDKGVELDNILRRTGVTGIVNGMDVQEWNPSTDKYITVKYDDSTVLEGKALLKEALQAEVGLQVDKNIPLIAFIGRLEEQKGSDILVAAIPQFIKEDVQIVALGTGKKEMEKQLQQLEISYPDKARGVAKFNVPLAHMIIAGADYILIPSRFEPCGLIQLQAMRYGTSVQSGSSEIKIWTVNFDWTVHVPIVASTGGLVDTVKEGFTGFQMGSFNVECDAVDPADVDAIAKTVTKALAVYGTPAFAEMIKNCMAQDLSWKLQRVTFAKITVTYCDSAKLTVNPNMQLGPAKKWEEVLLSLGVPGSEPGIDGEEIAPQAKENVATP*