AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0907700

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0907700 MtrunA17_Chr6g0456351 91.153 633 31 3 1 632 1 609 0.0 1134
Msa0907700 MtrunA17_Chr7g0217421 55.036 278 119 3 321 595 21 295 4.33e-90 285
Msa0907700 MtrunA17_Chr4g0052411 45.479 365 176 6 277 622 151 511 9.19e-87 285
Msa0907700 MtrunA17_Chr3g0143721 55.185 270 113 3 340 606 249 513 6.01e-86 283
Msa0907700 MtrunA17_Chr7g0260601 48.322 298 139 2 307 589 196 493 2.53e-85 281
Msa0907700 MtrunA17_Chr2g0297281 51.361 294 136 4 332 622 279 568 3.45e-85 282
Msa0907700 MtrunA17_Chr5g0429571 57.565 271 107 3 325 589 298 566 4.66e-85 283
Msa0907700 MtrunA17_Chr3g0104211 57.752 258 101 3 338 589 302 557 1.48e-82 276
Msa0907700 MtrunA17_Chr6g0476861 50.570 263 126 1 331 589 188 450 2.01e-79 265
Msa0907700 MtrunA17_Chr7g0248361 52.734 256 113 2 340 589 192 445 5.07e-79 263
Msa0907700 MtrunA17_Chr3g0135721 52.190 274 125 3 334 606 217 485 2.20e-78 263
Msa0907700 MtrunA17_Chr4g0031821 49.630 270 132 1 324 589 304 573 6.83e-78 264
Msa0907700 MtrunA17_Chr3g0094871 47.876 259 132 1 338 593 9 267 1.27e-76 251
Msa0907700 MtrunA17_Chr8g0362771 49.658 292 134 5 316 602 212 495 4.40e-76 257
Msa0907700 MtrunA17_Chr3g0135761 52.672 262 119 2 342 603 224 480 1.29e-75 255
Msa0907700 MtrunA17_Chr2g0331161 51.362 257 120 2 340 593 415 669 4.07e-74 254
Msa0907700 MtrunA17_Chr1g0158881 49.077 271 135 2 331 601 320 587 3.70e-71 245
Msa0907700 MtrunA17_Chr3g0129971 48.881 268 130 3 340 600 296 563 2.37e-69 241
Msa0907700 MtrunA17_Chr5g0432631 50.741 270 127 4 334 602 222 486 5.29e-69 240
Msa0907700 MtrunA17_Chr5g0432641 50.388 258 123 3 342 599 193 445 8.53e-66 228
Msa0907700 MtrunA17_Chr8g0388371 42.857 280 146 3 318 585 381 658 1.47e-63 226
Msa0907700 MtrunA17_Chr3g0135781 53.804 184 84 1 316 498 30 213 5.90e-57 191
Msa0907700 MtrunA17_Chr1g0192151 43.265 245 133 3 339 579 166 408 1.85e-53 189
Msa0907700 MtrunA17_Chr4g0014731 43.265 245 133 3 339 579 167 409 2.06e-53 188
Msa0907700 MtrunA17_Chr3g0145011 40.486 247 141 3 339 581 138 382 2.11e-51 182
Msa0907700 MtrunA17_Chr2g0327121 42.797 236 132 2 340 574 207 440 2.53e-51 190
Msa0907700 MtrunA17_Chr2g0327121 37.363 273 149 6 320 583 458 717 2.16e-46 176
Msa0907700 MtrunA17_Chr7g0264521 41.129 248 142 3 329 574 194 439 3.07e-51 189
Msa0907700 MtrunA17_Chr7g0264521 35.640 289 164 6 324 603 461 736 1.04e-46 176
Msa0907700 MtrunA17_Chr1g0180791 42.373 236 133 2 340 574 205 438 3.64e-51 189
Msa0907700 MtrunA17_Chr1g0180791 38.662 269 143 6 324 583 460 715 6.51e-48 180
Msa0907700 MtrunA17_Chr3g0141901 42.857 217 119 2 368 581 165 379 4.87e-51 181
Msa0907700 MtrunA17_Chr1g0168321 41.016 256 106 3 340 589 164 380 3.40e-48 176
Msa0907700 MtrunA17_Chr4g0050561 38.645 251 135 4 342 581 158 400 7.24e-48 173
Msa0907700 MtrunA17_Chr8g0345461 39.200 250 146 3 340 585 165 412 1.06e-47 173
Msa0907700 MtrunA17_Chr7g0255721 42.035 226 126 3 340 562 685 908 2.07e-47 179
Msa0907700 MtrunA17_Chr7g0255721 38.288 222 135 2 347 568 393 612 3.87e-33 136
Msa0907700 MtrunA17_Chr2g0277831 45.852 229 116 4 342 565 245 470 3.16e-47 178
Msa0907700 MtrunA17_Chr2g0277831 40.000 225 134 1 339 562 532 756 5.52e-41 159
Msa0907700 MtrunA17_Chr7g0262801 40.486 247 141 3 342 584 189 433 1.08e-46 171
Msa0907700 MtrunA17_Chr1g0182711 40.081 247 142 3 342 584 190 434 4.12e-46 169
Msa0907700 MtrunA17_Chr1g0200081 35.065 308 180 7 285 585 127 421 1.20e-45 167
Msa0907700 MtrunA17_Chr7g0255651 37.671 292 173 4 318 605 260 546 9.94e-45 168
Msa0907700 MtrunA17_Chr7g0255651 35.545 211 119 6 374 575 48 250 1.85e-20 95.5
Msa0907700 MtrunA17_Chr8g0357301 38.153 249 133 5 355 594 485 721 2.84e-43 167
Msa0907700 MtrunA17_Chr7g0255641 37.751 249 148 4 340 583 658 904 3.87e-43 166
Msa0907700 MtrunA17_Chr7g0255641 35.268 224 130 6 378 592 432 649 1.58e-28 121
Msa0907700 MtrunA17_Chr3g0108321 42.929 198 106 3 330 523 152 346 2.26e-41 154
Msa0907700 MtrunA17_Chr7g0255691 41.921 229 127 3 340 564 286 512 1.70e-40 155
Msa0907700 MtrunA17_Chr7g0255691 38.235 204 115 4 369 565 47 246 7.59e-27 115
Msa0907700 MtrunA17_Chr7g0255901 38.235 238 136 7 335 565 634 867 6.85e-38 150
Msa0907700 MtrunA17_Chr3g0086401 36.552 290 146 7 310 565 38 323 4.35e-37 147
Msa0907700 MtrunA17_Chr3g0086401 36.214 243 135 4 340 563 385 626 5.58e-33 134
Msa0907700 MtrunA17_Chr4g0026631 38.017 242 140 7 332 570 122 356 6.94e-37 143
Msa0907700 MtrunA17_Chr1g0190401 42.391 184 102 2 340 519 677 860 1.78e-36 146
Msa0907700 MtrunA17_Chr1g0202371 40.756 238 112 8 336 559 393 615 1.85e-36 145
Msa0907700 MtrunA17_Chr8g0387641 39.485 233 133 5 336 564 517 745 4.54e-36 145
Msa0907700 MtrunA17_Chr2g0321241 36.735 245 139 8 332 570 127 361 8.22e-36 140
Msa0907700 MtrunA17_Chr6g0462581 39.914 233 131 5 336 564 496 723 1.20e-35 143
Msa0907700 MtrunA17_Chr6g0459561 35.764 288 159 11 333 606 378 653 1.24e-35 142
Msa0907700 MtrunA17_Chr2g0316851 37.069 232 137 4 341 565 595 824 1.54e-35 144
Msa0907700 MtrunA17_Chr4g0043381 34.553 246 145 4 341 583 838 1070 1.67e-35 143
Msa0907700 MtrunA17_Chr3g0086411 34.733 262 154 3 340 584 215 476 2.99e-35 139
Msa0907700 MtrunA17_Chr3g0086411 45.205 146 73 1 427 565 7 152 1.66e-25 110
Msa0907700 MtrunA17_Chr3g0127431 37.607 234 138 4 335 564 79 308 4.01e-35 137
Msa0907700 MtrunA17_Chr5g0397121 39.056 233 134 5 336 564 509 737 7.06e-35 141
Msa0907700 MtrunA17_Chr2g0327231 41.436 181 97 4 321 495 328 505 2.67e-34 137
Msa0907700 MtrunA17_Chr2g0327231 37.079 89 53 1 340 428 153 238 5.31e-12 68.6
Msa0907700 MtrunA17_Chr1g0202381 39.407 236 119 8 336 559 464 687 3.55e-34 139
Msa0907700 MtrunA17_Chr3g0116131 38.983 236 131 7 335 565 897 1124 6.91e-34 138
Msa0907700 MtrunA17_Chr4g0004121 37.349 249 141 6 337 575 239 482 8.91e-34 135
Msa0907700 MtrunA17_Chr1g0204031 38.462 234 134 6 336 564 553 781 1.95e-33 137
Msa0907700 MtrunA17_Chr3g0127401 37.179 234 139 4 335 564 76 305 2.48e-33 132
Msa0907700 MtrunA17_Chr5g0432391 44.048 168 92 1 414 581 78 243 3.52e-33 132
Msa0907700 MtrunA17_Chr1g0195741 37.872 235 137 5 335 564 933 1163 4.49e-33 136
Msa0907700 MtrunA17_Chr1g0195731 37.295 244 144 6 335 573 929 1168 4.86e-33 136
Msa0907700 MtrunA17_Chr4g0052271 36.187 257 148 9 337 585 116 364 8.28e-33 130
Msa0907700 MtrunA17_Chr4g0038101 36.522 230 137 5 335 559 716 941 4.39e-32 132
Msa0907700 MtrunA17_Chr4g0033451 36.066 244 147 4 338 574 378 619 3.30e-31 130
Msa0907700 MtrunA17_Chr7g0246111 35.931 231 141 5 337 564 209 435 2.60e-30 125
Msa0907700 MtrunA17_Chr6g0459541 32.727 275 145 9 333 577 38 302 2.74e-28 116
Msa0907700 MtrunA17_Chr2g0289231 35.455 220 124 5 369 584 335 540 8.51e-28 118
Msa0907700 MtrunA17_Chr4g0047411 36.726 226 123 6 370 580 207 427 2.70e-27 117
Msa0907700 MtrunA17_Chr6g0459551 36.019 211 123 6 340 546 102 304 7.83e-25 107
Msa0907700 MtrunA17_Chr5g0404651 35.404 161 87 6 368 520 243 394 4.59e-13 72.0
Msa0907700 MtrunA17_Chr4g0062081 42.857 77 42 2 344 418 11 87 7.48e-12 62.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0907700 AT3G02450.1 68.235 510 144 5 123 631 130 622 0.0 696
Msa0907700 AT5G15250.1 55.849 265 111 3 334 595 216 477 2.41e-86 284
Msa0907700 AT1G06430.1 50.825 303 142 4 323 622 201 499 5.53e-86 283
Msa0907700 AT1G06430.3 50.825 303 142 4 323 622 201 499 5.53e-86 283
Msa0907700 AT1G06430.2 50.825 303 142 4 323 622 201 499 5.53e-86 283
Msa0907700 AT2G30950.1 52.055 292 133 4 334 622 219 506 7.26e-86 283
Msa0907700 AT2G30950.2 52.055 292 133 4 334 622 219 506 7.26e-86 283
Msa0907700 AT2G30950.3 52.055 292 133 4 334 622 219 506 7.26e-86 283
Msa0907700 AT2G30950.4 52.055 292 133 4 334 622 223 510 8.43e-86 283
Msa0907700 AT5G58870.1 57.795 263 103 3 336 592 322 582 2.66e-85 284
Msa0907700 AT1G50250.1 54.815 270 114 3 340 606 259 523 3.04e-85 282
Msa0907700 AT3G47060.1 58.238 261 101 3 338 592 320 578 1.37e-84 282
Msa0907700 AT5G42270.1 54.074 270 116 3 340 606 247 511 2.33e-84 279
Msa0907700 AT5G15250.2 51.389 288 111 4 334 595 216 500 1.98e-83 271
Msa0907700 AT2G26140.1 55.344 262 112 2 342 603 226 482 1.25e-79 267
Msa0907700 AT1G07510.1 49.630 270 132 1 324 589 308 577 6.30e-79 267
Msa0907700 AT2G29080.1 49.442 269 133 1 324 589 303 571 1.28e-76 261
Msa0907700 AT5G53170.1 50.554 271 131 2 331 601 350 617 7.30e-75 256
Msa0907700 AT3G16290.1 51.362 257 120 2 340 593 407 661 2.39e-74 256
Msa0907700 AT5G64580.1 42.151 344 166 8 288 600 239 580 6.87e-69 240
Msa0907700 AT4G23940.1 43.929 280 143 3 318 585 404 681 6.84e-64 228
Msa0907700 AT3G05530.1 43.265 245 133 3 339 579 167 409 1.78e-53 189
Msa0907700 AT1G09100.1 42.857 245 134 3 339 579 166 408 4.96e-52 185
Msa0907700 AT5G43010.1 43.779 217 117 2 368 581 165 379 6.86e-52 184
Msa0907700 AT1G45000.1 43.779 217 117 2 368 581 165 379 8.76e-52 184
Msa0907700 AT3G09840.1 41.949 236 134 2 340 574 204 437 1.19e-50 188
Msa0907700 AT3G09840.1 38.400 250 139 4 339 583 476 715 4.31e-42 163
Msa0907700 AT5G03340.1 41.949 236 134 2 340 574 204 437 1.44e-50 188
Msa0907700 AT5G03340.1 40.343 233 133 3 340 568 477 707 9.81e-46 174
Msa0907700 AT3G53230.1 41.102 236 136 2 340 574 205 438 4.82e-50 186
Msa0907700 AT3G53230.1 41.026 234 132 3 339 568 477 708 2.40e-47 179
Msa0907700 AT3G56690.1 44.053 227 120 4 340 562 721 944 6.95e-50 187
Msa0907700 AT3G56690.1 40.000 195 116 1 371 565 413 606 8.79e-37 147
Msa0907700 AT1G53750.1 39.200 250 146 3 340 585 165 412 2.03e-47 172
Msa0907700 AT4G29040.1 40.891 247 140 3 342 584 187 431 5.19e-47 172
Msa0907700 AT5G19990.2 38.095 252 137 4 342 582 102 345 8.13e-47 169
Msa0907700 AT5G19990.1 38.247 251 136 4 342 581 160 402 1.97e-46 169
Msa0907700 AT5G19990.3 38.247 251 136 4 342 581 160 402 1.97e-46 169
Msa0907700 AT2G20140.1 41.296 247 139 4 342 584 187 431 2.45e-46 170
Msa0907700 AT5G20000.1 38.247 251 136 4 342 581 160 402 2.94e-46 169
Msa0907700 AT5G58290.1 37.751 249 146 4 330 574 145 388 1.11e-43 162
Msa0907700 AT1G53780.3 33.987 306 187 6 285 585 288 583 1.53e-43 165
Msa0907700 AT1G53780.1 33.987 306 187 6 285 585 289 584 1.53e-43 165
Msa0907700 AT1G53780.4 33.987 306 187 6 285 585 289 584 1.53e-43 165
Msa0907700 AT1G53780.2 33.987 306 187 6 285 585 310 605 1.97e-43 165
Msa0907700 AT1G79560.3 37.349 249 135 5 355 594 505 741 8.07e-43 166
Msa0907700 AT1G79560.2 37.349 249 135 5 355 594 505 741 8.83e-43 166
Msa0907700 AT1G79560.1 37.349 249 135 5 355 594 505 741 1.04e-42 166
Msa0907700 AT3G01610.2 40.647 278 144 6 342 607 232 500 2.48e-42 164
Msa0907700 AT3G01610.2 36.515 241 148 4 340 577 525 763 6.68e-32 132
Msa0907700 AT3G01610.1 40.647 278 144 6 342 607 232 500 3.00e-42 164
Msa0907700 AT3G01610.1 36.515 241 148 4 340 577 525 763 6.68e-32 132
Msa0907700 AT2G03670.1 41.739 230 127 3 340 564 283 510 2.07e-39 153
Msa0907700 AT2G03670.1 39.906 213 116 5 366 570 46 254 1.45e-31 130
Msa0907700 AT4G28000.3 38.060 268 153 6 336 599 513 771 5.72e-37 147
Msa0907700 AT4G28000.1 38.060 268 153 6 336 599 511 769 6.36e-37 147
Msa0907700 AT5G08470.3 38.075 239 136 4 340 574 832 1062 6.76e-37 148
Msa0907700 AT4G28000.2 38.060 268 153 6 336 599 513 771 6.94e-37 147
Msa0907700 AT5G08470.1 38.075 239 136 4 340 574 841 1071 8.14e-37 148
Msa0907700 AT5G52882.1 38.735 253 140 7 336 583 510 752 9.73e-37 147
Msa0907700 AT1G03000.1 36.287 237 142 6 335 565 650 883 1.53e-36 147
Msa0907700 AT3G04340.1 42.935 184 101 2 340 519 781 964 6.00e-36 145
Msa0907700 AT1G64110.1 39.301 229 131 5 340 564 513 737 3.99e-35 142
Msa0907700 AT1G64110.5 39.301 229 131 5 340 564 516 740 4.09e-35 142
Msa0907700 AT1G64110.3 39.301 229 131 5 340 564 516 740 4.09e-35 142
Msa0907700 AT1G64110.2 39.301 229 131 5 340 564 518 742 4.14e-35 142
Msa0907700 AT1G64110.4 39.301 229 131 5 340 564 518 742 4.14e-35 142
Msa0907700 AT1G02890.1 38.189 254 147 7 335 582 936 1185 7.43e-35 142
Msa0907700 AT3G15120.1 37.438 203 121 2 368 565 745 946 3.48e-34 140
Msa0907700 AT3G15120.2 37.438 203 121 2 368 565 755 956 3.71e-34 140
Msa0907700 AT2G27600.1 35.918 245 141 8 332 570 124 358 1.03e-33 134
Msa0907700 AT4G02480.1 38.298 235 136 6 335 564 955 1185 1.39e-33 138
Msa0907700 AT2G45500.4 35.776 232 140 6 337 564 77 303 1.72e-33 132
Msa0907700 AT2G45500.3 35.776 232 140 6 337 564 77 303 1.72e-33 132
Msa0907700 AT1G80350.1 37.398 246 139 6 340 575 236 476 2.04e-33 135
Msa0907700 AT3G27120.1 37.553 237 127 9 333 560 396 620 2.74e-33 136
Msa0907700 AT2G34560.2 34.661 251 155 5 340 585 109 355 9.17e-33 130
Msa0907700 AT2G34560.1 35.317 252 152 7 340 585 100 346 9.97e-33 130
Msa0907700 AT2G45500.2 35.776 232 140 6 337 564 210 436 1.14e-32 132
Msa0907700 AT2G45500.5 35.776 232 140 6 337 564 220 446 1.19e-32 132
Msa0907700 AT2G45500.1 35.776 232 140 6 337 564 214 440 1.21e-32 132
Msa0907700 AT4G24860.3 36.397 272 151 8 335 601 810 1064 1.42e-32 135
Msa0907700 AT4G24860.1 36.397 272 151 8 335 601 812 1066 1.53e-32 134
Msa0907700 AT1G50140.2 35.798 257 152 6 335 586 684 932 1.76e-32 134
Msa0907700 AT1G50140.5 35.798 257 152 6 335 586 684 932 1.76e-32 134
Msa0907700 AT1G50140.3 35.798 257 152 6 335 586 706 954 1.89e-32 134
Msa0907700 AT1G50140.1 35.798 257 152 6 335 586 706 954 1.89e-32 134
Msa0907700 AT1G50140.4 35.798 257 152 6 335 586 706 954 1.89e-32 134
Msa0907700 AT4G24860.2 36.397 272 151 8 335 601 808 1062 1.93e-32 134
Msa0907700 AT4G24860.4 36.397 272 151 8 335 601 785 1039 2.13e-32 134
Msa0907700 AT2G03670.2 39.906 213 116 5 366 570 46 254 2.20e-32 130
Msa0907700 AT2G03670.2 41.429 140 77 2 340 474 283 422 4.15e-19 90.9
Msa0907700 AT3G19740.1 34.387 253 153 6 335 582 696 940 7.62e-32 132
Msa0907700 AT1G05910.1 35.458 251 153 4 337 580 375 623 3.00e-31 130
Msa0907700 AT5G53540.1 36.681 229 137 4 340 564 84 308 5.51e-31 125
Msa0907700 AT4G27680.1 35.043 234 144 4 335 564 76 305 4.75e-30 123
Msa0907700 AT4G04910.1 35.345 232 130 6 370 586 244 470 1.53e-26 115
Msa0907700 AT1G62130.1 35.178 253 133 8 335 583 745 970 1.73e-26 115
Msa0907700 AT1G62130.2 35.178 253 133 8 335 583 738 963 2.21e-26 115
Msa0907700 AT1G45000.2 48.182 110 54 1 368 474 165 274 5.98e-26 109
Msa0907700 AT4G04180.2 32.889 225 134 5 340 554 311 528 6.66e-26 113
Msa0907700 AT4G04180.1 32.889 225 134 5 340 554 316 533 7.39e-26 112
Msa0907700 AT5G08470.2 38.667 150 85 2 340 485 841 987 2.20e-21 99.8
Msa0907700 AT1G02890.2 32.677 254 133 8 335 582 936 1157 6.41e-21 98.6
Msa0907700 AT5G17740.1 26.829 246 146 5 368 599 237 462 2.16e-13 73.6
Msa0907700 AT5G17730.1 31.053 190 103 7 338 509 200 379 1.35e-12 70.9

Find 151 sgRNAs with CRISPR-Local

Find 338 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AATCCAACTGTCTGACTATT+AGG 0.199018 6_2:-6449695 None:intergenic
GCGGCCGAGGTTACGGTTAT+TGG 0.248138 6_2:+6449022 Msa0907700:CDS
ACTGGCAGATACTGTGAAAA+AGG 0.271192 6_2:-6451784 None:intergenic
TCATTGAGGTTTCAACAAAA+TGG 0.272591 6_2:+6448885 Msa0907700:CDS
AATAAGAAATTTGAGTATTA+TGG 0.276076 6_2:+6448843 Msa0907700:CDS
AAGCCGTTGTATTTGTTTAC+AGG 0.284997 6_2:+6453976 Msa0907700:three_prime_UTR
ATTTCCTTGCTGTACTAAAA+AGG 0.285721 6_2:-6451854 None:intergenic
CAATCATTGAATTCATGATT+TGG 0.317172 6_2:+6453826 Msa0907700:exon
GTAGCTTTGCCCCTACCTTT+TGG 0.317824 6_2:-6451680 None:intergenic
TGTTTGTTAGGAAGAATATT+AGG 0.330998 6_2:+6449096 Msa0907700:CDS
AGTAATGTCTTGCCAGTTCC+TGG 0.338717 6_2:-6451729 None:intergenic
GATGATAAGAAGAGTGATTA+TGG 0.341503 6_2:+6448951 Msa0907700:CDS
TTTCTCCTTCCTTCTTCATC+AGG 0.347579 6_2:-6452673 None:intergenic
GCTATTGAAAGAGCAAAGTT+TGG 0.356257 6_2:+6453676 Msa0907700:CDS
AACTTGCCTGATTGAGCGTT+TGG 0.362410 6_2:-6451956 None:intergenic
ATGAGGTTGAAGTGTTTGTT+AGG 0.381184 6_2:+6449084 Msa0907700:CDS
TCCTTGGATGCCATCATTGA+TGG 0.385574 6_2:+6453756 Msa0907700:CDS
TGTGGCAAGGGAAGATATAA+TGG 0.388759 6_2:+6453651 Msa0907700:CDS
AGCTAAGCAAGTTATTTCCT+TGG 0.398063 6_2:+6453740 Msa0907700:CDS
TGAGATTGCGGCCGAGGTTA+CGG 0.403962 6_2:+6449015 Msa0907700:CDS
ATATTAGCTGTGCATTTAAG+AGG 0.405260 6_2:+6452697 Msa0907700:CDS
AGAAGAGTGATTATGGTAAA+GGG 0.408799 6_2:+6448958 Msa0907700:CDS
TTTCGTTGAGATTGCGGCCG+AGG 0.410912 6_2:+6449009 Msa0907700:CDS
TTAGGTTTCCGCTTCTTAGC+TGG 0.413254 6_2:-6449677 None:intergenic
GTGGAATCTTGTGGTGGAAG+AGG 0.422399 6_2:-6448493 None:intergenic
GAAATGATTGAATGTGGAAA+TGG 0.423329 6_2:-6448547 None:intergenic
GCATTTAAGAGGAGTTCCTT+TGG 0.423787 6_2:+6452708 Msa0907700:CDS
TATTGGTTATGAAGATGAAA+AGG 0.424736 6_2:+6449039 Msa0907700:CDS
TTCAATGATTGATAACCTAA+TGG 0.427719 6_2:-6453814 None:intergenic
TTTCTTTACCTTGTTGTACT+GGG 0.428267 6_2:+6448703 Msa0907700:CDS
AAGAAGAGTGATTATGGTAA+AGG 0.428461 6_2:+6448957 Msa0907700:CDS
CTTGTCGGTCCTCCAGGAAC+TGG 0.431660 6_2:+6451717 Msa0907700:CDS
CTTAGTTTGATGAGGGAAAA+GGG 0.432422 6_2:+6449524 Msa0907700:CDS
GATGACATACAAGGACCATT+AGG 0.434995 6_2:+6453799 Msa0907700:CDS
ATTGGTTATGAAGATGAAAA+GGG 0.442841 6_2:+6449040 Msa0907700:CDS
TTCTTCAATTTATTCAATGC+AGG 0.445292 6_2:-6449425 None:intergenic
TCTTAGTTTGATGAGGGAAA+AGG 0.455840 6_2:+6449523 Msa0907700:CDS
AGGGCTGGATCCAAGGCTTC+TGG 0.459623 6_2:-6452607 None:intergenic
TCTCGAGGAAAGTATTTGTA+GGG 0.465124 6_2:+6452647 Msa0907700:CDS
GAGTTCGTTGAAATGTTTGT+TGG 0.467301 6_2:+6451807 Msa0907700:CDS
CCTAGAGGAGTGTTGCTTGT+CGG 0.467543 6_2:+6451702 Msa0907700:CDS
TTTCCCTCATCAAACTAAGA+AGG 0.468514 6_2:-6449520 None:intergenic
TTGATTGCGAGTCTTCGAAA+TGG 0.468552 6_2:+6449221 Msa0907700:CDS
GTTGGATTTGAAGATGTTCA+AGG 0.468812 6_2:+6449710 Msa0907700:CDS
TGATTGCGAGTCTTCGAAAT+GGG 0.474413 6_2:+6449222 Msa0907700:CDS
CATTGATGGGAAGAAGTGAT+AGG 0.477672 6_2:+6453770 Msa0907700:CDS
TTCTCGAGGAAAGTATTTGT+AGG 0.479629 6_2:+6452646 Msa0907700:CDS
GTGTTGCTTGTCGGTCCTCC+AGG 0.483133 6_2:+6451711 Msa0907700:CDS
TTCAGAGAAATGATTGAATG+TGG 0.485505 6_2:-6448553 None:intergenic
AAGAAGCTTCAATGATGAAC+GGG 0.488699 6_2:+6451932 Msa0907700:CDS
AGTAGATGTTTCGATGGATA+AGG 0.488805 6_2:+6449355 Msa0907700:CDS
ACGGGACCAAACGCTCAATC+AGG 0.492720 6_2:+6451950 Msa0907700:CDS
TCATCAATGAATATGATTGA+TGG 0.492788 6_2:-6451882 None:intergenic
TGAGAATGTTGAAAATGATA+AGG 0.493218 6_2:+6449304 Msa0907700:CDS
CGACCGGGACGACACAGGGC+TGG 0.495070 6_2:-6452622 None:intergenic
TACCTTTGATTCCTTTGATG+TGG 0.496607 6_2:+6449624 Msa0907700:CDS
CTCGCAATCAAGTCTGAATA+CGG 0.496992 6_2:-6449209 None:intergenic
CCCATCAATGATGGCATCCA+AGG 0.497149 6_2:-6453757 None:intergenic
ATTGTACAAGTAAATTTGAC+AGG 0.498751 6_2:-6453853 None:intergenic
TTACTTGCACGTGCAATAGC+GGG 0.501158 6_2:+6451747 Msa0907700:CDS
CTCGTGGAATACTGCCACTC+AGG 0.503338 6_2:-6449473 None:intergenic
AATAAGTGTGAACAATGAAA+AGG 0.503440 6_2:-6453881 None:intergenic
GATGTAGTTGCTGACAGAAA+TGG 0.504091 6_2:+6452534 Msa0907700:intron
ACGACACAGGGCTGGATCCA+AGG 0.506054 6_2:-6452614 None:intergenic
GTTGAAATGTTTGTTGGAAG+AGG 0.509876 6_2:+6451813 Msa0907700:CDS
GAATCAATGATAAGCAACTA+AGG 0.515226 6_2:+6453698 Msa0907700:CDS
CCTTGGATGCCATCATTGAT+GGG 0.518892 6_2:+6453757 Msa0907700:CDS
AATGATAAGCAACTAAGGTC+TGG 0.519509 6_2:+6453703 Msa0907700:CDS
AAGAGTGATTATGGTAAAGG+GGG 0.519703 6_2:+6448960 Msa0907700:CDS
AGAAACGACCGGGACGACAC+AGG 0.521094 6_2:-6452627 None:intergenic
ATCTTAATTACCAAAAGGTA+GGG 0.521468 6_2:+6451670 Msa0907700:CDS
AAGAGGAGTTCCTTTGGAGG+AGG 0.521596 6_2:+6452714 Msa0907700:CDS
GAAACGACCGGGACGACACA+GGG 0.522419 6_2:-6452626 None:intergenic
CCGACAAGCAACACTCCTCT+AGG 0.523663 6_2:-6451702 None:intergenic
GATCCAGCCCTGTGTCGTCC+CGG 0.528518 6_2:+6452619 Msa0907700:CDS
AATCTTGTGGTGGAAGAGGA+AGG 0.529777 6_2:-6448489 None:intergenic
CACTTGTTAGTAGTAGAAGT+AGG 0.531041 6_2:+6448928 Msa0907700:CDS
TTCTGCAAAAGTAGAGCTCA+TGG 0.532444 6_2:+6449739 Msa0907700:CDS
AGGGGATCTTAATTACCAAA+AGG 0.534990 6_2:+6451665 Msa0907700:CDS
ATTCCTTCTTAGTTTGATGA+GGG 0.535065 6_2:+6449517 Msa0907700:CDS
TCGGCGTATATATTATAATA+CGG 0.537481 6_2:+6449277 Msa0907700:CDS
AAATGATTGAATGTGGAAAT+GGG 0.539688 6_2:-6448546 None:intergenic
TCACTTCTTCCCATCAATGA+TGG 0.540303 6_2:-6453766 None:intergenic
AATTCCTTCTTAGTTTGATG+AGG 0.542897 6_2:+6449516 Msa0907700:CDS
ACTTGTTAGTAGTAGAAGTA+GGG 0.546654 6_2:+6448929 Msa0907700:CDS
AACTAACCGACCAGAAGCCT+TGG 0.546714 6_2:+6452597 Msa0907700:CDS
AGGTTTCAACAAAATGGTGT+TGG 0.547536 6_2:+6448891 Msa0907700:CDS
TAGTTTGATGAGGGAAAAGG+GGG 0.551133 6_2:+6449526 Msa0907700:CDS
AGCCACATCAAAGGAATCAA+AGG 0.552057 6_2:-6449626 None:intergenic
TTAATTGCCACAGTTACTGA+TGG 0.552662 6_2:+6452757 Msa0907700:CDS
GATCTTAATTACCAAAAGGT+AGG 0.556895 6_2:+6451669 Msa0907700:CDS
AAACATTTCAACGAACTCAC+TGG 0.559253 6_2:-6451802 None:intergenic
GGCTCCTCAATCTGTGTTAG+CGG 0.560045 6_2:+6449562 Msa0907700:CDS
TACTTTCCTCGAGAAACGAC+CGG 0.560952 6_2:-6452638 None:intergenic
TAGATAGTTTCATGTCTGCA+AGG 0.562996 6_2:+6451645 Msa0907700:intron
AGATAGTTTCATGTCTGCAA+GGG 0.563490 6_2:+6451646 Msa0907700:intron
GATGAACTTGATGCGGTTGG+TGG 0.563575 6_2:+6451900 Msa0907700:CDS
ATTGATGAACTTGATGCGGT+TGG 0.564921 6_2:+6451897 Msa0907700:CDS
GAAGAGTGATTATGGTAAAG+GGG 0.567690 6_2:+6448959 Msa0907700:CDS
ATTGTGTAGAATTCAAGAAG+TGG 0.570636 6_2:-6448512 None:intergenic
ACTTTCCTCGAGAAACGACC+GGG 0.571156 6_2:-6452637 None:intergenic
TGTTAGGAAGAATATTAGGA+CGG 0.574043 6_2:+6449100 Msa0907700:CDS
TTTAAGAGGAGTTCCTTTGG+AGG 0.576585 6_2:+6452711 Msa0907700:CDS
ATCGCCGCTAACACAGATTG+AGG 0.577228 6_2:-6449566 None:intergenic
GTAGGGGAACCTGATGAAGA+AGG 0.580091 6_2:+6452664 Msa0907700:CDS
AGTGAGAATGCTGTAAGATC+TGG 0.580335 6_2:+6449395 Msa0907700:CDS
GAGAATGCTGTAAGATCTGG+TGG 0.581579 6_2:+6449398 Msa0907700:CDS
ATTACTTGCACGTGCAATAG+CGG 0.589109 6_2:+6451746 Msa0907700:CDS
AAACCTAATAGTCAGACAGT+TGG 0.591387 6_2:+6449692 Msa0907700:CDS
AGGTAGTGAAACTGTGGCAA+GGG 0.592368 6_2:+6453639 Msa0907700:intron
CTCGAGGAAAGTATTTGTAG+GGG 0.592820 6_2:+6452648 Msa0907700:CDS
CTGCTAGTCCAGCTAAGAAG+CGG 0.598949 6_2:+6449669 Msa0907700:CDS
GAAGAAGCTTCAATGATGAA+CGG 0.603023 6_2:+6451931 Msa0907700:CDS
AGGAAACAAGATGACATACA+AGG 0.608187 6_2:+6453790 Msa0907700:CDS
AGAGTGATTATGGTAAAGGG+GGG 0.609298 6_2:+6448961 Msa0907700:CDS
TTAGTTTGATGAGGGAAAAG+GGG 0.610943 6_2:+6449525 Msa0907700:CDS
ATGTTAGCATCCTCCTCCAA+AGG 0.613955 6_2:-6452724 None:intergenic
CAGGTAGTGAAACTGTGGCA+AGG 0.614725 6_2:+6453638 Msa0907700:intron
GCTTTGCTCGCTGCTCGAAG+AGG 0.615478 6_2:+6452820 Msa0907700:CDS
TCTTAATTACCAAAAGGTAG+GGG 0.616122 6_2:+6451671 Msa0907700:CDS
TACTTGCACGTGCAATAGCG+GGG 0.616204 6_2:+6451748 Msa0907700:CDS
CTACTTCTACTACTAACAAG+TGG 0.617574 6_2:-6448927 None:intergenic
AAGGTCTGGTAAAATAAGCA+AGG 0.618919 6_2:+6453717 Msa0907700:CDS
ACAGTTACTGATGGTCTCGT+AGG 0.621604 6_2:+6452766 Msa0907700:CDS
GATGCGGTTGGTGGCAAGCG+TGG 0.625586 6_2:+6451909 Msa0907700:CDS
ATTCAAGAAGTGGAATCTTG+TGG 0.629032 6_2:-6448502 None:intergenic
GGGAACCTGATGAAGAAGGA+AGG 0.631438 6_2:+6452668 Msa0907700:CDS
ACAAGTAGTAGATGTTTCGA+TGG 0.632621 6_2:+6449349 Msa0907700:CDS
AAGAAATTCTCTAAGAGACG+AGG 0.632753 6_2:+6449443 Msa0907700:CDS
CGATATATAAGCCACATCAA+AGG 0.635077 6_2:-6449635 None:intergenic
TAACCTGTAAACAAATACAA+CGG 0.637673 6_2:-6453979 None:intergenic
GATAGTTTCATGTCTGCAAG+GGG 0.647274 6_2:+6451647 Msa0907700:intron
AATCTGTGTTAGCGGCGATG+AGG 0.652895 6_2:+6449570 Msa0907700:CDS
CAAGAAGTGGAATCTTGTGG+TGG 0.653275 6_2:-6448499 None:intergenic
ATTCATTGATGAACTTGATG+CGG 0.654455 6_2:+6451893 Msa0907700:CDS
ATAACCAATAACCGTAACCT+CGG 0.664720 6_2:-6449026 None:intergenic
CTGGATCCAAGGCTTCTGGT+CGG 0.665200 6_2:-6452603 None:intergenic
TAGGAAGAATATTAGGACGG+TGG 0.679945 6_2:+6449103 Msa0907700:CDS
TACGAGACCATCAGTAACTG+TGG 0.680129 6_2:-6452764 None:intergenic
ACTTGCACGTGCAATAGCGG+GGG 0.689020 6_2:+6451749 Msa0907700:CDS
GTAGGGGCAAAGCTACCTAG+AGG 0.692537 6_2:+6451687 Msa0907700:CDS
ATTTGAATCAGAAATGAGAG+TGG 0.693418 6_2:+6452561 Msa0907700:CDS
GACGAGGTTCGATTCCTGAG+TGG 0.695014 6_2:+6449459 Msa0907700:CDS
GAGTCTTCGAAATGGGAATG+TGG 0.703259 6_2:+6449229 Msa0907700:CDS
TAGTTGCTGACAGAAATGGA+TGG 0.707484 6_2:+6452538 Msa0907700:intron
GATGGATAAGGATATAGACA+AGG 0.709329 6_2:+6449367 Msa0907700:CDS
ATCTGCAGGTAGTGAAACTG+TGG 0.711089 6_2:+6453633 Msa0907700:intron
AATGTCTTGCCAGTTCCTGG+AGG 0.719587 6_2:-6451726 None:intergenic
TCTTCGAGCAGCGAGCAAAG+CGG 0.723854 6_2:-6452818 None:intergenic
TGCAAAAGTAGAGCTCATGG+AGG 0.758952 6_2:+6449742 Msa0907700:CDS
TGATAACTGTGATCACACTG+TGG 0.773244 6_2:+6449600 Msa0907700:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! CAATATAATCTAATAAAATT+AGG + chr6_2:6450853-6450872 Msa0907700:intron 10.0%
!! AAATAATTTGATAAAAAAAC+TGG - chr6_2:6452375-6452394 None:intergenic 10.0%
!!! GTTAAAAATTAGGAATTTTA+GGG + chr6_2:6448746-6448765 Msa0907700:CDS 15.0%
!!! AATGCTATAATTTTGAAAAT+GGG + chr6_2:6448811-6448830 Msa0907700:CDS 15.0%
!! AATAAGAAATTTGAGTATTA+TGG + chr6_2:6448843-6448862 Msa0907700:CDS 15.0%
!! TAATTACTTATAACCATATT+CGG + chr6_2:6450156-6450175 Msa0907700:intron 15.0%
!!! AAACAATTAGAGTATTATAT+AGG + chr6_2:6450442-6450461 Msa0907700:intron 15.0%
!!! AACAATTAGAGTATTATATA+GGG + chr6_2:6450443-6450462 Msa0907700:intron 15.0%
!!! CTAAATGTTGTATTTTAAAA+GGG + chr6_2:6451313-6451332 Msa0907700:intron 15.0%
!!! ATTCTATATAAATTGAGTTT+TGG + chr6_2:6452947-6452966 Msa0907700:intron 15.0%
!! ATAACATTAAAACATCTTAT+TGG + chr6_2:6453291-6453310 Msa0907700:intron 15.0%
!! AATTTCTATTTCAAAAGATA+AGG - chr6_2:6453341-6453360 None:intergenic 15.0%
!! AAAAATATCATTTAATGTGA+AGG - chr6_2:6453555-6453574 None:intergenic 15.0%
!!! TCAAAACTAATTCATTTTAT+AGG - chr6_2:6454018-6454037 None:intergenic 15.0%
!!! AAATGAATTAGTTTTGATTT+TGG + chr6_2:6454021-6454040 Msa0907700:three_prime_UTR 15.0%
!! ACAGAATTCAACAAAAAAAT+TGG - chr6_2:6448608-6448627 None:intergenic 20.0%
!!! GATTTGATTTTGAATAGAAA+TGG + chr6_2:6448674-6448693 Msa0907700:exon 20.0%
!!! TTCCTAATTTTTAACCTATT+TGG - chr6_2:6448741-6448760 None:intergenic 20.0%
!!! GGTTAAAAATTAGGAATTTT+AGG + chr6_2:6448745-6448764 Msa0907700:CDS 20.0%
!!! CAATGCTATAATTTTGAAAA+TGG + chr6_2:6448810-6448829 Msa0907700:CDS 20.0%
!!! AAAGTAGAAATTTTTCATTG+AGG + chr6_2:6448871-6448890 Msa0907700:CDS 20.0%
!!! TACAAACTTTTATTCTTATG+TGG + chr6_2:6449882-6449901 Msa0907700:intron 20.0%
!!! ATGTAATTTGTCTTTTTGAA+TGG + chr6_2:6449935-6449954 Msa0907700:intron 20.0%
!!! AAATAAGTATAGTTTTTCCA+TGG + chr6_2:6449998-6450017 Msa0907700:intron 20.0%
!!! AATAAGTATAGTTTTTCCAT+GGG + chr6_2:6449999-6450018 Msa0907700:intron 20.0%
!! TTACTTAATTGTTTACATCT+AGG + chr6_2:6450377-6450396 Msa0907700:intron 20.0%
!! TAATTGTTTAATTGTACCTT+TGG - chr6_2:6450431-6450450 None:intergenic 20.0%
!!! ACAATTAGAGTATTATATAG+GGG + chr6_2:6450444-6450463 Msa0907700:intron 20.0%
!!! ATAAAATAAGAGAAAAGTGT+TGG - chr6_2:6450610-6450629 None:intergenic 20.0%
!! ATGGTCAAAAATTAAAGTTA+CGG - chr6_2:6450767-6450786 None:intergenic 20.0%
!!! AAGTTTAATTTGGTTTTGAT+AGG - chr6_2:6450974-6450993 None:intergenic 20.0%
!!! GCTAAATGTTGTATTTTAAA+AGG + chr6_2:6451312-6451331 Msa0907700:intron 20.0%
!!! TACAAAATTTTGATGCAATT+GGG - chr6_2:6451381-6451400 None:intergenic 20.0%
!! AATATAAAAGCAATACAGAT+TGG - chr6_2:6451447-6451466 None:intergenic 20.0%
!!! GTTTTCATCATTTCTAATTT+TGG + chr6_2:6451555-6451574 Msa0907700:intron 20.0%
!! AAAGTTGACAAAAAAAAAAG+TGG - chr6_2:6452112-6452131 None:intergenic 20.0%
!! AAATGACATAGAAAATTGAT+TGG - chr6_2:6452141-6452160 None:intergenic 20.0%
!! TTGATTTATGATTTGAATCT+TGG + chr6_2:6452159-6452178 Msa0907700:intron 20.0%
!! TTCATAATAAGATTTGATTC+AGG + chr6_2:6452267-6452286 Msa0907700:intron 20.0%
!! TAAATATTCAACATGTTCAT+TGG + chr6_2:6452436-6452455 Msa0907700:intron 20.0%
!! AAAAAAATTGTTTGCATACA+AGG - chr6_2:6453908-6453927 None:intergenic 20.0%
! AAATGATTGAATGTGGAAAT+GGG - chr6_2:6448549-6448568 None:intergenic 25.0%
! CACCAAATAGGTTAAAAATT+AGG + chr6_2:6448736-6448755 Msa0907700:CDS 25.0%
!!! ATTTTGAAAATGGGTTTGTA+TGG + chr6_2:6448820-6448839 Msa0907700:CDS 25.0%
!! TATTGGTTATGAAGATGAAA+AGG + chr6_2:6449039-6449058 Msa0907700:CDS 25.0%
! ATTGGTTATGAAGATGAAAA+GGG + chr6_2:6449040-6449059 Msa0907700:CDS 25.0%
!!! TGTTGAATCTGTTTTAAATG+AGG + chr6_2:6449067-6449086 Msa0907700:CDS 25.0%
!! TGTTTGTTAGGAAGAATATT+AGG + chr6_2:6449096-6449115 Msa0907700:CDS 25.0%
!!! TTTTGAAGTTTACTTCACTT+CGG + chr6_2:6449171-6449190 Msa0907700:CDS 25.0%
! TCGGCGTATATATTATAATA+CGG + chr6_2:6449277-6449296 Msa0907700:CDS 25.0%
! TGAGAATGTTGAAAATGATA+AGG + chr6_2:6449304-6449323 Msa0907700:CDS 25.0%
! TTCTTCAATTTATTCAATGC+AGG - chr6_2:6449428-6449447 None:intergenic 25.0%
!! TACTCAAAGCTTTTATGTTT+TGG - chr6_2:6450063-6450082 None:intergenic 25.0%
! GAGATAAAAAATTCCGAATA+TGG - chr6_2:6450172-6450191 None:intergenic 25.0%
! TATCTAGATAGATAGTCAAA+TGG - chr6_2:6450217-6450236 None:intergenic 25.0%
!! CAATTAGAGTATTATATAGG+GGG + chr6_2:6450445-6450464 Msa0907700:intron 25.0%
! TGTGTGTATCAATATACAAA+TGG + chr6_2:6450494-6450513 Msa0907700:intron 25.0%
! AAACTGAATCTCATAAAACA+GGG - chr6_2:6450643-6450662 None:intergenic 25.0%
! TAAACTGAATCTCATAAAAC+AGG - chr6_2:6450644-6450663 None:intergenic 25.0%
! TCAGTTTAATCATTATGCTT+CGG + chr6_2:6450656-6450675 Msa0907700:intron 25.0%
!!! GTTTTTCAGTTTGTTGATTT+TGG - chr6_2:6450910-6450929 None:intergenic 25.0%
! ATATTTATTTGATCCTTCCT+CGG + chr6_2:6451181-6451200 Msa0907700:intron 25.0%
!! TTGTAATTTTATCACTCAAC+CGG - chr6_2:6451277-6451296 None:intergenic 25.0%
!!! CTACAAAATTTTGATGCAAT+TGG - chr6_2:6451382-6451401 None:intergenic 25.0%
! ATCATTCAATGAATACAACA+CGG - chr6_2:6451422-6451441 None:intergenic 25.0%
! ATAGTCACAATTCAAAGAAA+CGG - chr6_2:6451473-6451492 None:intergenic 25.0%
! TTTCTTTGAATTGTGACTAT+TGG + chr6_2:6451473-6451492 Msa0907700:intron 25.0%
! TAGAAATGATGAAAACGTAA+AGG - chr6_2:6451551-6451570 None:intergenic 25.0%
! ATGAAACTATCTACAAATCA+GGG - chr6_2:6451638-6451657 None:intergenic 25.0%
! ATCTTAATTACCAAAAGGTA+GGG + chr6_2:6451670-6451689 Msa0907700:CDS 25.0%
! TCATCAATGAATATGATTGA+TGG - chr6_2:6451885-6451904 None:intergenic 25.0%
! TTGACAAAAAAAAAAGTGGT+TGG - chr6_2:6452108-6452127 None:intergenic 25.0%
! ATAAGATTTGATTCAGGATT+TGG + chr6_2:6452273-6452292 Msa0907700:intron 25.0%
! ACATCTAAATTGTTTGACAA+TGG - chr6_2:6452352-6452371 None:intergenic 25.0%
! TTTAGTATATACTGTCTACA+TGG + chr6_2:6452409-6452428 Msa0907700:intron 25.0%
! ATCAACGAAAAATTCTTTGA+AGG - chr6_2:6452517-6452536 None:intergenic 25.0%
! TTGACCGTATATTATTAACT+TGG + chr6_2:6452914-6452933 Msa0907700:intron 25.0%
! TGACCGTATATTATTAACTT+GGG + chr6_2:6452915-6452934 Msa0907700:intron 25.0%
! TCACCCAAGTTAATAATATA+CGG - chr6_2:6452921-6452940 None:intergenic 25.0%
!! TAAAATCAAAGAGTGTATGA+AGG + chr6_2:6453030-6453049 Msa0907700:intron 25.0%
!! TCTGAAGTAGTTATATCTAA+GGG + chr6_2:6453163-6453182 Msa0907700:intron 25.0%
!! TGATGTATTTGAGTTAACTA+TGG + chr6_2:6453197-6453216 Msa0907700:intron 25.0%
!! ATGTTATTCTAAAGAGCTTA+TGG - chr6_2:6453278-6453297 None:intergenic 25.0%
!!! GAAAGCATTTATGATATAAG+CGG + chr6_2:6453384-6453403 Msa0907700:intron 25.0%
!! TTCAATGATTGATAACCTAA+TGG - chr6_2:6453817-6453836 None:intergenic 25.0%
! CAATCATTGAATTCATGATT+TGG + chr6_2:6453826-6453845 Msa0907700:exon 25.0%
! ATTGTACAAGTAAATTTGAC+AGG - chr6_2:6453856-6453875 None:intergenic 25.0%
! AATAAGTGTGAACAATGAAA+AGG - chr6_2:6453884-6453903 None:intergenic 25.0%
! TAACCTGTAAACAAATACAA+CGG - chr6_2:6453982-6454001 None:intergenic 25.0%
ATTGTGTAGAATTCAAGAAG+TGG - chr6_2:6448515-6448534 None:intergenic 30.0%
GAAATGATTGAATGTGGAAA+TGG - chr6_2:6448550-6448569 None:intergenic 30.0%
TTCAGAGAAATGATTGAATG+TGG - chr6_2:6448556-6448575 None:intergenic 30.0%
!! TTTTCTTTACCTTGTTGTAC+TGG + chr6_2:6448702-6448721 Msa0907700:CDS 30.0%
! TTTCTTTACCTTGTTGTACT+GGG + chr6_2:6448703-6448722 Msa0907700:CDS 30.0%
!!! AGGAATTTTAGGGTTTATAG+AGG + chr6_2:6448756-6448775 Msa0907700:CDS 30.0%
TCATTGAGGTTTCAACAAAA+TGG + chr6_2:6448885-6448904 Msa0907700:CDS 30.0%
! ACTTGTTAGTAGTAGAAGTA+GGG + chr6_2:6448929-6448948 Msa0907700:CDS 30.0%
GATGATAAGAAGAGTGATTA+TGG + chr6_2:6448951-6448970 Msa0907700:CDS 30.0%
AAGAAGAGTGATTATGGTAA+AGG + chr6_2:6448957-6448976 Msa0907700:CDS 30.0%
AGAAGAGTGATTATGGTAAA+GGG + chr6_2:6448958-6448977 Msa0907700:CDS 30.0%
TGTTAGGAAGAATATTAGGA+CGG + chr6_2:6449100-6449119 Msa0907700:CDS 30.0%
!!! GAGAAAGTTTTAGTTGAAGA+GGG + chr6_2:6449251-6449270 Msa0907700:CDS 30.0%
!!! AGAAAGTTTTAGTTGAAGAG+GGG + chr6_2:6449252-6449271 Msa0907700:CDS 30.0%
! AATTCCTTCTTAGTTTGATG+AGG + chr6_2:6449516-6449535 Msa0907700:CDS 30.0%
! ATTCCTTCTTAGTTTGATGA+GGG + chr6_2:6449517-6449536 Msa0907700:CDS 30.0%
! AGGTAACAATCTCATCTTTT+AGG + chr6_2:6449762-6449781 Msa0907700:intron 30.0%
CCTGATGAGATAAATATCAT+TGG - chr6_2:6449838-6449857 None:intergenic 30.0%
CCAATGATATTTATCTCATC+AGG + chr6_2:6449835-6449854 Msa0907700:intron 30.0%
!! GTTTCTAGTATTTCGTTAAC+TGG + chr6_2:6449859-6449878 Msa0907700:intron 30.0%
! AATGGTTAAGTAAGACCTTT+TGG + chr6_2:6449953-6449972 Msa0907700:intron 30.0%
CATCTTTGTATGTTACCAAA+AGG - chr6_2:6449971-6449990 None:intergenic 30.0%
!! CTTTTGGTAACATACAAAGA+TGG + chr6_2:6449969-6449988 Msa0907700:intron 30.0%
AGAAAGTTCAACTAACTTCT+TGG + chr6_2:6450093-6450112 Msa0907700:intron 30.0%
TTCAACTAACTTCTTGGTTT+AGG + chr6_2:6450099-6450118 Msa0907700:intron 30.0%
AAGTAAATCATATATTCCCG+AGG + chr6_2:6450293-6450312 Msa0907700:intron 30.0%
TCTTTGAATCACAAAATGTC+AGG + chr6_2:6450331-6450350 Msa0907700:intron 30.0%
AACTGAATCTCATAAAACAG+GGG - chr6_2:6450642-6450661 None:intergenic 30.0%
GTCAAAAATTAAAGTTACGG+TGG - chr6_2:6450764-6450783 None:intergenic 30.0%
TGACACACACAAGTTTAATT+TGG - chr6_2:6450984-6451003 None:intergenic 30.0%
CAATCTATAGCAGTTTGAAT+TGG - chr6_2:6451242-6451261 None:intergenic 30.0%
CAATTCAAACTGCTATAGAT+TGG + chr6_2:6451240-6451259 Msa0907700:intron 30.0%
! TTAAAAGGGTATAGTACATG+TGG + chr6_2:6451327-6451346 Msa0907700:intron 30.0%
!!! TCAACTCGCTATAGTTTTAA+GGG - chr6_2:6451510-6451529 None:intergenic 30.0%
!! TTCAACTCGCTATAGTTTTA+AGG - chr6_2:6451511-6451530 None:intergenic 30.0%
CATGAAACTATCTACAAATC+AGG - chr6_2:6451639-6451658 None:intergenic 30.0%
GATCTTAATTACCAAAAGGT+AGG + chr6_2:6451669-6451688 Msa0907700:CDS 30.0%
TCTTAATTACCAAAAGGTAG+GGG + chr6_2:6451671-6451690 Msa0907700:CDS 30.0%
! ATTTCCTTGCTGTACTAAAA+AGG - chr6_2:6451857-6451876 None:intergenic 30.0%
ATTCATTGATGAACTTGATG+CGG + chr6_2:6451893-6451912 Msa0907700:CDS 30.0%
TCAATATCTTAAGATGCATG+TGG + chr6_2:6452032-6452051 Msa0907700:intron 30.0%
GGCTACATTAAGTTTAAAAG+AGG - chr6_2:6452087-6452106 None:intergenic 30.0%
ATTTGAATCAGAAATGAGAG+TGG + chr6_2:6452561-6452580 Msa0907700:CDS 30.0%
ATATTAGCTGTGCATTTAAG+AGG + chr6_2:6452697-6452716 Msa0907700:CDS 30.0%
!! AGCTGATTTTATATGCTATC+TGG + chr6_2:6453075-6453094 Msa0907700:intron 30.0%
!! GCTGATTTTATATGCTATCT+GGG + chr6_2:6453076-6453095 Msa0907700:intron 30.0%
!! CTCTGAAGTAGTTATATCTA+AGG + chr6_2:6453162-6453181 Msa0907700:intron 30.0%
TCATTTAATGTGAAGGTGAA+AGG - chr6_2:6453548-6453567 None:intergenic 30.0%
GAATCAATGATAAGCAACTA+AGG + chr6_2:6453698-6453717 Msa0907700:CDS 30.0%
ATTCAAGAAGTGGAATCTTG+TGG - chr6_2:6448505-6448524 None:intergenic 35.0%
AAAAATGACCCAGTACAACA+AGG - chr6_2:6448714-6448733 None:intergenic 35.0%
!!! GGTCATTTTTGACACCAAAT+AGG + chr6_2:6448724-6448743 Msa0907700:CDS 35.0%
AGGTTTCAACAAAATGGTGT+TGG + chr6_2:6448891-6448910 Msa0907700:CDS 35.0%
CTACTTCTACTACTAACAAG+TGG - chr6_2:6448930-6448949 None:intergenic 35.0%
! CACTTGTTAGTAGTAGAAGT+AGG + chr6_2:6448928-6448947 Msa0907700:CDS 35.0%
GAAGAGTGATTATGGTAAAG+GGG + chr6_2:6448959-6448978 Msa0907700:CDS 35.0%
AAGAGTGATTATGGTAAAGG+GGG + chr6_2:6448960-6448979 Msa0907700:CDS 35.0%
! AGAGATTTTCGTTGAGATTG+CGG + chr6_2:6449003-6449022 Msa0907700:CDS 35.0%
ATAACCAATAACCGTAACCT+CGG - chr6_2:6449029-6449048 None:intergenic 35.0%
! ATGAGGTTGAAGTGTTTGTT+AGG + chr6_2:6449084-6449103 Msa0907700:CDS 35.0%
! GAATACGGAACAATTTTCAC+TGG - chr6_2:6449197-6449216 None:intergenic 35.0%
!!! GGAGAAAGTTTTAGTTGAAG+AGG + chr6_2:6449250-6449269 Msa0907700:CDS 35.0%
ACAAGTAGTAGATGTTTCGA+TGG + chr6_2:6449349-6449368 Msa0907700:CDS 35.0%
AGTAGATGTTTCGATGGATA+AGG + chr6_2:6449355-6449374 Msa0907700:CDS 35.0%
GATGGATAAGGATATAGACA+AGG + chr6_2:6449367-6449386 Msa0907700:CDS 35.0%
! AAGAAATTCTCTAAGAGACG+AGG + chr6_2:6449443-6449462 Msa0907700:CDS 35.0%
!! GTCATGATCTATTTTTCTCG+TGG - chr6_2:6449492-6449511 None:intergenic 35.0%
TTTCCCTCATCAAACTAAGA+AGG - chr6_2:6449523-6449542 None:intergenic 35.0%
! TCTTAGTTTGATGAGGGAAA+AGG + chr6_2:6449523-6449542 Msa0907700:CDS 35.0%
! CTTAGTTTGATGAGGGAAAA+GGG + chr6_2:6449524-6449543 Msa0907700:CDS 35.0%
! TTAGTTTGATGAGGGAAAAG+GGG + chr6_2:6449525-6449544 Msa0907700:CDS 35.0%
TACCTTTGATTCCTTTGATG+TGG + chr6_2:6449624-6449643 Msa0907700:CDS 35.0%
CGATATATAAGCCACATCAA+AGG - chr6_2:6449638-6449657 None:intergenic 35.0%
AAACCTAATAGTCAGACAGT+TGG + chr6_2:6449692-6449711 Msa0907700:CDS 35.0%
AATCCAACTGTCTGACTATT+AGG - chr6_2:6449698-6449717 None:intergenic 35.0%
GTTGGATTTGAAGATGTTCA+AGG + chr6_2:6449710-6449729 Msa0907700:CDS 35.0%
TTCCATGGGATTATAATCAG+TGG + chr6_2:6450013-6450032 Msa0907700:intron 35.0%
! TACCACTGATTATAATCCCA+TGG - chr6_2:6450018-6450037 None:intergenic 35.0%
!!! CAGTGGTAGATTTTAGCTTT+TGG + chr6_2:6450030-6450049 Msa0907700:intron 35.0%
!!! GTAGATTTTAGCTTTTGGCA+CGG + chr6_2:6450035-6450054 Msa0907700:intron 35.0%
!!! GGATTTTTGAGATGTGACAT+TGG + chr6_2:6450120-6450139 Msa0907700:intron 35.0%
! TTAGAGTATTATATAGGGGG+TGG + chr6_2:6450448-6450467 Msa0907700:intron 35.0%
CTAAGAATCGTGATTAGCAA+TGG - chr6_2:6450527-6450546 None:intergenic 35.0%
AAAATTAAAGTTACGGTGGC+AGG - chr6_2:6450760-6450779 None:intergenic 35.0%
ACTGTAAACCTCACCTATAT+AGG + chr6_2:6450817-6450836 Msa0907700:intron 35.0%
CTGTAAACCTCACCTATATA+GGG + chr6_2:6450818-6450837 Msa0907700:intron 35.0%
TGTAAACCTCACCTATATAG+GGG + chr6_2:6450819-6450838 Msa0907700:intron 35.0%
ATTTATGAGCACCCCTATAT+AGG - chr6_2:6450833-6450852 None:intergenic 35.0%
!!! TTACTTTTTTCTTCCGAGGA+AGG - chr6_2:6451197-6451216 None:intergenic 35.0%
!!! GTCTTTACTTTTTTCTTCCG+AGG - chr6_2:6451201-6451220 None:intergenic 35.0%
TAAAGACTTAAACCGAGACA+AGG + chr6_2:6451214-6451233 Msa0907700:intron 35.0%
TTTGAATTGGATCCTTGTCT+CGG - chr6_2:6451229-6451248 None:intergenic 35.0%
! TAGATTGGATTAGAGTGAAC+CGG + chr6_2:6451255-6451274 Msa0907700:intron 35.0%
TAGATAGTTTCATGTCTGCA+AGG + chr6_2:6451645-6451664 Msa0907700:intron 35.0%
AGATAGTTTCATGTCTGCAA+GGG + chr6_2:6451646-6451665 Msa0907700:intron 35.0%
AGGGGATCTTAATTACCAAA+AGG + chr6_2:6451665-6451684 Msa0907700:CDS 35.0%
AAACATTTCAACGAACTCAC+TGG - chr6_2:6451805-6451824 None:intergenic 35.0%
GAGTTCGTTGAAATGTTTGT+TGG + chr6_2:6451807-6451826 Msa0907700:CDS 35.0%
! GTTGAAATGTTTGTTGGAAG+AGG + chr6_2:6451813-6451832 Msa0907700:CDS 35.0%
GAAGAAGCTTCAATGATGAA+CGG + chr6_2:6451931-6451950 Msa0907700:CDS 35.0%
AAGAAGCTTCAATGATGAAC+GGG + chr6_2:6451932-6451951 Msa0907700:CDS 35.0%
GCAACAATTGATTGAACTCA+TGG + chr6_2:6452006-6452025 Msa0907700:intron 35.0%
!! TTCTCGAGGAAAGTATTTGT+AGG + chr6_2:6452646-6452665 Msa0907700:CDS 35.0%
!! TCTCGAGGAAAGTATTTGTA+GGG + chr6_2:6452647-6452666 Msa0907700:CDS 35.0%
TTAATTGCCACAGTTACTGA+TGG + chr6_2:6452757-6452776 Msa0907700:CDS 35.0%
ATCATGTCACATAAGCACTT+AGG - chr6_2:6453437-6453456 None:intergenic 35.0%
AATCCATATTTGCAATCTGC+AGG + chr6_2:6453619-6453638 Msa0907700:intron 35.0%
GCTATTGAAAGAGCAAAGTT+TGG + chr6_2:6453676-6453695 Msa0907700:CDS 35.0%
AATGATAAGCAACTAAGGTC+TGG + chr6_2:6453703-6453722 Msa0907700:CDS 35.0%
AAGGTCTGGTAAAATAAGCA+AGG + chr6_2:6453717-6453736 Msa0907700:CDS 35.0%
! AGCTAAGCAAGTTATTTCCT+TGG + chr6_2:6453740-6453759 Msa0907700:CDS 35.0%
AGGAAACAAGATGACATACA+AGG + chr6_2:6453790-6453809 Msa0907700:CDS 35.0%
AAGCCGTTGTATTTGTTTAC+AGG + chr6_2:6453976-6453995 Msa0907700:three_prime_UTR 35.0%
AGAGTGATTATGGTAAAGGG+GGG + chr6_2:6448961-6448980 Msa0907700:CDS 40.0%
TAGGAAGAATATTAGGACGG+TGG + chr6_2:6449103-6449122 Msa0907700:CDS 40.0%
CTCGCAATCAAGTCTGAATA+CGG - chr6_2:6449212-6449231 None:intergenic 40.0%
TTGATTGCGAGTCTTCGAAA+TGG + chr6_2:6449221-6449240 Msa0907700:CDS 40.0%
TGATTGCGAGTCTTCGAAAT+GGG + chr6_2:6449222-6449241 Msa0907700:CDS 40.0%
!! TTTTAGTTGAAGAGGGGTCT+CGG + chr6_2:6449258-6449277 Msa0907700:CDS 40.0%
AGTGAGAATGCTGTAAGATC+TGG + chr6_2:6449395-6449414 Msa0907700:CDS 40.0%
TAGTTTGATGAGGGAAAAGG+GGG + chr6_2:6449526-6449545 Msa0907700:CDS 40.0%
TGATAACTGTGATCACACTG+TGG + chr6_2:6449600-6449619 Msa0907700:CDS 40.0%
AGCCACATCAAAGGAATCAA+AGG - chr6_2:6449629-6449648 None:intergenic 40.0%
TTCTGCAAAAGTAGAGCTCA+TGG + chr6_2:6449739-6449758 Msa0907700:CDS 40.0%
CTTTGGTACCACAAAAGCAA+GGG - chr6_2:6450414-6450433 None:intergenic 40.0%
TCACGATTCTTAGCGTGTAT+TGG + chr6_2:6450534-6450553 Msa0907700:intron 40.0%
GGAGCATAGTATTTCAGTGA+CGG - chr6_2:6450589-6450608 None:intergenic 40.0%
AATCTCATAAAACAGGGGAG+AGG - chr6_2:6450637-6450656 None:intergenic 40.0%
! GATGAAAACGTAAAGGCATG+AGG - chr6_2:6451544-6451563 None:intergenic 40.0%
TCAGGGACAGTGTCAATATA+CGG - chr6_2:6451621-6451640 None:intergenic 40.0%
GATAGTTTCATGTCTGCAAG+GGG + chr6_2:6451647-6451666 Msa0907700:intron 40.0%
ATTACTTGCACGTGCAATAG+CGG + chr6_2:6451746-6451765 Msa0907700:CDS 40.0%
CTGGCAGATACTGTGAAAAA+GGG - chr6_2:6451786-6451805 None:intergenic 40.0%
ACTGGCAGATACTGTGAAAA+AGG - chr6_2:6451787-6451806 None:intergenic 40.0%
!! GAGACCTTTTTAGTACAGCA+AGG + chr6_2:6451850-6451869 Msa0907700:CDS 40.0%
ATTGATGAACTTGATGCGGT+TGG + chr6_2:6451897-6451916 Msa0907700:CDS 40.0%
GATGTAGTTGCTGACAGAAA+TGG + chr6_2:6452534-6452553 Msa0907700:intron 40.0%
TAGTTGCTGACAGAAATGGA+TGG + chr6_2:6452538-6452557 Msa0907700:intron 40.0%
!! CTCGAGGAAAGTATTTGTAG+GGG + chr6_2:6452648-6452667 Msa0907700:CDS 40.0%
TTTCTCCTTCCTTCTTCATC+AGG - chr6_2:6452676-6452695 None:intergenic 40.0%
GCATTTAAGAGGAGTTCCTT+TGG + chr6_2:6452708-6452727 Msa0907700:CDS 40.0%
TTTAAGAGGAGTTCCTTTGG+AGG + chr6_2:6452711-6452730 Msa0907700:CDS 40.0%
! AAGCAGTTGTGAGGCTATTT+TGG + chr6_2:6453223-6453242 Msa0907700:intron 40.0%
ATAAGCACTTAGGCATGGTT+TGG - chr6_2:6453427-6453446 None:intergenic 40.0%
CTACCTGCAGATTGCAAATA+TGG - chr6_2:6453625-6453644 None:intergenic 40.0%
TGTGGCAAGGGAAGATATAA+TGG + chr6_2:6453651-6453670 Msa0907700:CDS 40.0%
TCACTTCTTCCCATCAATGA+TGG - chr6_2:6453769-6453788 None:intergenic 40.0%
CATTGATGGGAAGAAGTGAT+AGG + chr6_2:6453770-6453789 Msa0907700:CDS 40.0%
GATGACATACAAGGACCATT+AGG + chr6_2:6453799-6453818 Msa0907700:CDS 40.0%
!!! CAACGGCTTCTCATTTTTTG+TGG - chr6_2:6453965-6453984 None:intergenic 40.0%
! AATCTTGTGGTGGAAGAGGA+AGG - chr6_2:6448492-6448511 None:intergenic 45.0%
CAAGAAGTGGAATCTTGTGG+TGG - chr6_2:6448502-6448521 None:intergenic 45.0%
GAGTCTTCGAAATGGGAATG+TGG + chr6_2:6449229-6449248 Msa0907700:CDS 45.0%
GAGAATGCTGTAAGATCTGG+TGG + chr6_2:6449398-6449417 Msa0907700:CDS 45.0%
AAAGGGGGTTACGTTTAGCT+CGG + chr6_2:6449541-6449560 Msa0907700:CDS 45.0%
TTAGGTTTCCGCTTCTTAGC+TGG - chr6_2:6449680-6449699 None:intergenic 45.0%
TGCAAAAGTAGAGCTCATGG+AGG + chr6_2:6449742-6449761 Msa0907700:CDS 45.0%
ATCTGACATATCAGAGCCTC+GGG - chr6_2:6450312-6450331 None:intergenic 45.0%
GATCTGACATATCAGAGCCT+CGG - chr6_2:6450313-6450332 None:intergenic 45.0%
!! AGCTCATACCCTTGCTTTTG+TGG + chr6_2:6450403-6450422 Msa0907700:intron 45.0%
CCTTTGGTACCACAAAAGCA+AGG - chr6_2:6450415-6450434 None:intergenic 45.0%
!! CCTTGCTTTTGTGGTACCAA+AGG + chr6_2:6450412-6450431 Msa0907700:intron 45.0%
TATATAGGGGGTGGCGTTTA+AGG + chr6_2:6450457-6450476 Msa0907700:intron 45.0%
CAAAACACAAAGCGGTTCAG+AGG - chr6_2:6450564-6450583 None:intergenic 45.0%
TGACGGTGCAAAACACAAAG+CGG - chr6_2:6450572-6450591 None:intergenic 45.0%
! TTTCCCATTGGGTTGTTGGT+TGG - chr6_2:6450682-6450701 None:intergenic 45.0%
! TGTGTTTCCCATTGGGTTGT+TGG - chr6_2:6450686-6450705 None:intergenic 45.0%
ACTTGGCTGTGTTTCCCATT+GGG - chr6_2:6450693-6450712 None:intergenic 45.0%
GTTGCGTAGCAGTACACAAA+TGG - chr6_2:6450786-6450805 None:intergenic 45.0%
AGTAATGTCTTGCCAGTTCC+TGG - chr6_2:6451732-6451751 None:intergenic 45.0%
TTACTTGCACGTGCAATAGC+GGG + chr6_2:6451747-6451766 Msa0907700:CDS 45.0%
AACTTGCCTGATTGAGCGTT+TGG - chr6_2:6451959-6451978 None:intergenic 45.0%
TACTTTCCTCGAGAAACGAC+CGG - chr6_2:6452641-6452660 None:intergenic 45.0%
ATGTTAGCATCCTCCTCCAA+AGG - chr6_2:6452727-6452746 None:intergenic 45.0%
TACGAGACCATCAGTAACTG+TGG - chr6_2:6452767-6452786 None:intergenic 45.0%
ACAGTTACTGATGGTCTCGT+AGG + chr6_2:6452766-6452785 Msa0907700:CDS 45.0%
GTCACATAAGCACTTAGGCA+TGG - chr6_2:6453432-6453451 None:intergenic 45.0%
TGAAGGTGAAAGGTCGATGA+AGG - chr6_2:6453538-6453557 None:intergenic 45.0%
ATCTGCAGGTAGTGAAACTG+TGG + chr6_2:6453633-6453652 Msa0907700:intron 45.0%
AGGTAGTGAAACTGTGGCAA+GGG + chr6_2:6453639-6453658 Msa0907700:intron 45.0%
TCCTTGGATGCCATCATTGA+TGG + chr6_2:6453756-6453775 Msa0907700:CDS 45.0%
CCTTGGATGCCATCATTGAT+GGG + chr6_2:6453757-6453776 Msa0907700:CDS 45.0%
! GTGGAATCTTGTGGTGGAAG+AGG - chr6_2:6448496-6448515 None:intergenic 50.0%
GATTATGGTAAAGGGGGGAG+TGG + chr6_2:6448966-6448985 Msa0907700:CDS 50.0%
GTAAAGGGGGGAGTGGTAAT+AGG + chr6_2:6448973-6448992 Msa0907700:CDS 50.0%
GGCTCCTCAATCTGTGTTAG+CGG + chr6_2:6449562-6449581 Msa0907700:CDS 50.0%
ATCGCCGCTAACACAGATTG+AGG - chr6_2:6449569-6449588 None:intergenic 50.0%
AATCTGTGTTAGCGGCGATG+AGG + chr6_2:6449570-6449589 Msa0907700:CDS 50.0%
CTGCTAGTCCAGCTAAGAAG+CGG + chr6_2:6449669-6449688 Msa0907700:CDS 50.0%
CACTTGGCTGTGTTTCCCAT+TGG - chr6_2:6450694-6450713 None:intergenic 50.0%
CAATGGGAAACACAGCCAAG+TGG + chr6_2:6450692-6450711 Msa0907700:intron 50.0%
GATGGGCAAAACACTCCAAG+AGG - chr6_2:6450734-6450753 None:intergenic 50.0%
TGAGCACCCCTATATAGGTG+AGG - chr6_2:6450828-6450847 None:intergenic 50.0%
!! GTAGCTTTGCCCCTACCTTT+TGG - chr6_2:6451683-6451702 None:intergenic 50.0%
!! CCTAGAGGAGTGTTGCTTGT+CGG + chr6_2:6451702-6451721 Msa0907700:CDS 50.0%
AATGTCTTGCCAGTTCCTGG+AGG - chr6_2:6451729-6451748 None:intergenic 50.0%
TACTTGCACGTGCAATAGCG+GGG + chr6_2:6451748-6451767 Msa0907700:CDS 50.0%
GATGAACTTGATGCGGTTGG+TGG + chr6_2:6451900-6451919 Msa0907700:CDS 50.0%
AACTAACCGACCAGAAGCCT+TGG + chr6_2:6452597-6452616 Msa0907700:CDS 50.0%
ACTTTCCTCGAGAAACGACC+GGG - chr6_2:6452640-6452659 None:intergenic 50.0%
GTAGGGGAACCTGATGAAGA+AGG + chr6_2:6452664-6452683 Msa0907700:CDS 50.0%
GGGAACCTGATGAAGAAGGA+AGG + chr6_2:6452668-6452687 Msa0907700:CDS 50.0%
! AAGAGGAGTTCCTTTGGAGG+AGG + chr6_2:6452714-6452733 Msa0907700:CDS 50.0%
CTATGGCACAAGCAGTTGTG+AGG + chr6_2:6453214-6453233 Msa0907700:intron 50.0%
GAAAGGTCGATGAAGGCAGA+GGG - chr6_2:6453531-6453550 None:intergenic 50.0%
TGAAAGGTCGATGAAGGCAG+AGG - chr6_2:6453532-6453551 None:intergenic 50.0%
CAGGTAGTGAAACTGTGGCA+AGG + chr6_2:6453638-6453657 Msa0907700:intron 50.0%
CCCATCAATGATGGCATCCA+AGG - chr6_2:6453760-6453779 None:intergenic 50.0%
TTTCGTTGAGATTGCGGCCG+AGG + chr6_2:6449009-6449028 Msa0907700:CDS 55.0%
TGAGATTGCGGCCGAGGTTA+CGG + chr6_2:6449015-6449034 Msa0907700:CDS 55.0%
GACGAGGTTCGATTCCTGAG+TGG + chr6_2:6449459-6449478 Msa0907700:CDS 55.0%
CTCGTGGAATACTGCCACTC+AGG - chr6_2:6449476-6449495 None:intergenic 55.0%
TCGGCCAACCAACAACCCAA+TGG + chr6_2:6450675-6450694 Msa0907700:intron 55.0%
CGGCCAACCAACAACCCAAT+GGG + chr6_2:6450676-6450695 Msa0907700:intron 55.0%
CAAGAGGCCAGCCTTAAGGT+GGG - chr6_2:6450718-6450737 None:intergenic 55.0%
ACTCCAAGAGGCCAGCCTTA+AGG - chr6_2:6450722-6450741 None:intergenic 55.0%
GTTACGGTGGCAGGACAGAT+GGG - chr6_2:6450751-6450770 None:intergenic 55.0%
AGTTACGGTGGCAGGACAGA+TGG - chr6_2:6450752-6450771 None:intergenic 55.0%
GTAGGGGCAAAGCTACCTAG+AGG + chr6_2:6451687-6451706 Msa0907700:CDS 55.0%
CCGACAAGCAACACTCCTCT+AGG - chr6_2:6451705-6451724 None:intergenic 55.0%
ACTTGCACGTGCAATAGCGG+GGG + chr6_2:6451749-6451768 Msa0907700:CDS 55.0%
ACGGGACCAAACGCTCAATC+AGG + chr6_2:6451950-6451969 Msa0907700:CDS 55.0%
CTGGATCCAAGGCTTCTGGT+CGG - chr6_2:6452606-6452625 None:intergenic 55.0%
TCTTCGAGCAGCGAGCAAAG+CGG - chr6_2:6452821-6452840 None:intergenic 55.0%
GGTGTCTGTAGGGAGGCTAA+TGG - chr6_2:6453498-6453517 None:intergenic 55.0%
!! AAGCAGCAGGGGTGTCTGTA+GGG - chr6_2:6453508-6453527 None:intergenic 55.0%
GCGGCCGAGGTTACGGTTAT+TGG + chr6_2:6449022-6449041 Msa0907700:CDS 60.0%
CAGCCAAGTGGCCCACCTTA+AGG + chr6_2:6450704-6450723 Msa0907700:intron 60.0%
CAGCCTTAAGGTGGGCCACT+TGG - chr6_2:6450710-6450729 None:intergenic 60.0%
CAAGTGGCCCACCTTAAGGC+TGG + chr6_2:6450708-6450727 Msa0907700:intron 60.0%
CCAAGAGGCCAGCCTTAAGG+TGG - chr6_2:6450719-6450738 None:intergenic 60.0%
!! CCACCTTAAGGCTGGCCTCT+TGG + chr6_2:6450716-6450735 Msa0907700:intron 60.0%
!! GTGTTGCTTGTCGGTCCTCC+AGG + chr6_2:6451711-6451730 Msa0907700:CDS 60.0%
CTTGTCGGTCCTCCAGGAAC+TGG + chr6_2:6451717-6451736 Msa0907700:CDS 60.0%
AGGGCTGGATCCAAGGCTTC+TGG - chr6_2:6452610-6452629 None:intergenic 60.0%
ACGACACAGGGCTGGATCCA+AGG - chr6_2:6452617-6452636 None:intergenic 60.0%
GAAACGACCGGGACGACACA+GGG - chr6_2:6452629-6452648 None:intergenic 60.0%
AGAAACGACCGGGACGACAC+AGG - chr6_2:6452630-6452649 None:intergenic 60.0%
GCTTTGCTCGCTGCTCGAAG+AGG + chr6_2:6452820-6452839 Msa0907700:CDS 60.0%
!! GAAGCAGCAGGGGTGTCTGT+AGG - chr6_2:6453509-6453528 None:intergenic 60.0%
AAGGCAGAGGGAAGCAGCAG+GGG - chr6_2:6453519-6453538 None:intergenic 60.0%
GAAGGCAGAGGGAAGCAGCA+GGG - chr6_2:6453520-6453539 None:intergenic 60.0%
TGAAGGCAGAGGGAAGCAGC+AGG - chr6_2:6453521-6453540 None:intergenic 60.0%
! CGTGCAATAGCGGGGGAAGC+AGG + chr6_2:6451756-6451775 Msa0907700:CDS 65.0%
!! GATGCGGTTGGTGGCAAGCG+TGG + chr6_2:6451909-6451928 Msa0907700:CDS 65.0%
GATCCAGCCCTGTGTCGTCC+CGG + chr6_2:6452619-6452638 Msa0907700:CDS 65.0%
GTCGTCCCGGTCGTTTCTCG+AGG + chr6_2:6452632-6452651 Msa0907700:CDS 65.0%
!! CAGCAGGGGTGTCTGTAGGG+AGG - chr6_2:6453505-6453524 None:intergenic 65.0%
CGACCGGGACGACACAGGGC+TGG - chr6_2:6452625-6452644 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr6_2 gene 6448478 6454060 6448478 ID=Msa0907700;Name=Msa0907700
chr6_2 mRNA 6448478 6454060 6448478 ID=Msa0907700-mRNA-1;Parent=Msa0907700;Name=Msa0907700-mRNA-1;_AED=0.07;_eAED=0.07;_QI=215|0.66|0.5|1|1|1|4|217|632
chr6_2 exon 6448478 6449763 6448478 ID=Msa0907700-mRNA-1:exon:1990;Parent=Msa0907700-mRNA-1
chr6_2 exon 6451648 6451971 6451648 ID=Msa0907700-mRNA-1:exon:1991;Parent=Msa0907700-mRNA-1
chr6_2 exon 6452541 6452841 6452541 ID=Msa0907700-mRNA-1:exon:1992;Parent=Msa0907700-mRNA-1
chr6_2 exon 6453641 6454060 6453641 ID=Msa0907700-mRNA-1:exon:1993;Parent=Msa0907700-mRNA-1
chr6_2 five_prime_UTR 6448478 6448692 6448478 ID=Msa0907700-mRNA-1:five_prime_utr;Parent=Msa0907700-mRNA-1
chr6_2 CDS 6448693 6449763 6448693 ID=Msa0907700-mRNA-1:cds;Parent=Msa0907700-mRNA-1
chr6_2 CDS 6451648 6451971 6451648 ID=Msa0907700-mRNA-1:cds;Parent=Msa0907700-mRNA-1
chr6_2 CDS 6452541 6452841 6452541 ID=Msa0907700-mRNA-1:cds;Parent=Msa0907700-mRNA-1
chr6_2 CDS 6453641 6453843 6453641 ID=Msa0907700-mRNA-1:cds;Parent=Msa0907700-mRNA-1
chr6_2 three_prime_UTR 6453844 6454060 6453844 ID=Msa0907700-mRNA-1:three_prime_utr;Parent=Msa0907700-mRNA-1
Gene Sequence

>Msa0907700

ATGGCTTGTTTTTCTTTACCTTGTTGTACTGGGTCATTTTTGACACCAAATAGGTTAAAAATTAGGAATTTTAGGGTTTATAGAGGTTTATGCACTTCAATGAAGTTTAAGTTTAATCAATGCTATAATTTTGAAAATGGGTTTGTATGGAATAAGAAATTTGAGTATTATGGTAGAAAAAGTAGAAATTTTTCATTGAGGTTTCAACAAAATGGTGTTGGTAATGAAACTGAGCCACTTGTTAGTAGTAGAAGTAGGGATGATAAGAAGAGTGATTATGGTAAAGGGGGGAGTGGTAATAGGTTGAAGAAGAGATTTTCGTTGAGATTGCGGCCGAGGTTACGGTTATTGGTTATGAAGATGAAAAGGGCTTCTGTTGAATCTGTTTTAAATGAGGTTGAAGTGTTTGTTAGGAAGAATATTAGGACGGTGGCGTTTGCTACATCGTTTTCGATTGTGTTTACACTTTGTTTTTTGTTTTTGAAGTTTACTTCACTTCGGCCAGTGAAAATTGTTCCGTATTCAGACTTGATTGCGAGTCTTCGAAATGGGAATGTGGAGAAAGTTTTAGTTGAAGAGGGGTCTCGGCGTATATATTATAATACGGTGTCTGAGAATGTTGAAAATGATAAGGTTTCTGATGAAGAAGAATCACAACAAGTAGTAGATGTTTCGATGGATAAGGATATAGACAAGGTTGTGAGTGAGAATGCTGTAAGATCTGGTGGAATTCCTGCATTGAATAAATTGAAGAAATTCTCTAAGAGACGAGGTTCGATTCCTGAGTGGCAGTATTCCACGAGAAAAATAGATCATGACGAAAAATTCCTTCTTAGTTTGATGAGGGAAAAGGGGGTTACGTTTAGCTCGGCTCCTCAATCTGTGTTAGCGGCGATGAGGAGTACTTTGATAACTGTGATCACACTGTGGATACCTTTGATTCCTTTGATGTGGCTTATATATCGTCAACTTTCTGCTGCTAGTCCAGCTAAGAAGCGGAAACCTAATAGTCAGACAGTTGGATTTGAAGATGTTCAAGGTGTTGATTCTGCAAAAGTAGAGCTCATGGAGATAGTTTCATGTCTGCAAGGGGATCTTAATTACCAAAAGGTAGGGGCAAAGCTACCTAGAGGAGTGTTGCTTGTCGGTCCTCCAGGAACTGGCAAGACATTACTTGCACGTGCAATAGCGGGGGAAGCAGGTGTACCCTTTTTCACAGTATCTGCCAGTGAGTTCGTTGAAATGTTTGTTGGAAGAGGTGCTGCTAGAGTCAGAGACCTTTTTAGTACAGCAAGGAAATTTGCACCATCAATCATATTCATTGATGAACTTGATGCGGTTGGTGGCAAGCGTGGAAGAAGCTTCAATGATGAACGGGACCAAACGCTCAATCAGTTGCTGACAGAAATGGATGGATTTGAATCAGAAATGAGAGTGGTTGTCATTGCAGCAACTAACCGACCAGAAGCCTTGGATCCAGCCCTGTGTCGTCCCGGTCGTTTCTCGAGGAAAGTATTTGTAGGGGAACCTGATGAAGAAGGAAGGAGAAAAATATTAGCTGTGCATTTAAGAGGAGTTCCTTTGGAGGAGGATGCTAACATCATATGTCATTTAATTGCCACAGTTACTGATGGTCTCGTAGGTGCTGATCTTGCAAACATCGTCAATGAATCCGCTTTGCTCGCTGCTCGAAGAGGTAGTGAAACTGTGGCAAGGGAAGATATAATGGAAGCTATTGAAAGAGCAAAGTTTGGAATCAATGATAAGCAACTAAGGTCTGGTAAAATAAGCAAGGAGCTAAGCAAGTTATTTCCTTGGATGCCATCATTGATGGGAAGAAGTGATAGGAAACAAGATGACATACAAGGACCATTAGGTTATCAATCATTGAATTCATGA
Protein sequence

>Msa0907700

MACFSLPCCTGSFLTPNRLKIRNFRVYRGLCTSMKFKFNQCYNFENGFVWNKKFEYYGRKSRNFSLRFQQNGVGNETEPLVSSRSRDDKKSDYGKGGSGNRLKKRFSLRLRPRLRLLVMKMKRASVESVLNEVEVFVRKNIRTVAFATSFSIVFTLCFLFLKFTSLRPVKIVPYSDLIASLRNGNVEKVLVEEGSRRIYYNTVSENVENDKVSDEEESQQVVDVSMDKDIDKVVSENAVRSGGIPALNKLKKFSKRRGSIPEWQYSTRKIDHDEKFLLSLMREKGVTFSSAPQSVLAAMRSTLITVITLWIPLIPLMWLIYRQLSAASPAKKRKPNSQTVGFEDVQGVDSAKVELMEIVSCLQGDLNYQKVGAKLPRGVLLVGPPGTGKTLLARAIAGEAGVPFFTVSASEFVEMFVGRGAARVRDLFSTARKFAPSIIFIDELDAVGGKRGRSFNDERDQTLNQLLTEMDGFESEMRVVVIAATNRPEALDPALCRPGRFSRKVFVGEPDEEGRRKILAVHLRGVPLEEDANIICHLIATVTDGLVGADLANIVNESALLAARRGSETVAREDIMEAIERAKFGINDKQLRSGKISKELSKLFPWMPSLMGRSDRKQDDIQGPLGYQSLNS*