AlfalfaGEDB | Msa1445790

M. sativa cultivar zhongmu-4 / Msa1445790

KEGG: K03696
GO: GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009536 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
PFAM: PF02861.23

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1445790	sp\|P35100\|CLPC_PEA	89.366	931	90	4	1	931	1	922	0.0	1642

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1445790	A0A396J1U1	99.141	931	4	1	1	931	1	927	0.0	1863

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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0001950	Msa1445790	0.810445	1.148401e-50	-8.615850e-47
Msa0003470	Msa1445790	0.808362	3.214492e-50	-8.615850e-47
Msa0004350	Msa1445790	0.816396	5.650689e-52	-8.615850e-47
Msa0007230	Msa1445790	0.812258	4.641612e-51	-8.615850e-47
Msa0008850	Msa1445790	0.800998	1.107677e-48	-8.615850e-47
Msa0011140	Msa1445790	0.840845	6.804261e-58	-8.615850e-47
Msa0011720	Msa1445790	0.845720	3.405047e-59	-8.615850e-47
Msa0012440	Msa1445790	0.825107	5.614345e-54	-8.615850e-47
Msa0017120	Msa1445790	0.816469	5.441385e-52	-8.615850e-47
Msa0017940	Msa1445790	0.821014	5.058028e-53	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1445790	MtrunA17_Chr3g0134631	99.141	931	4	1	1	931	1	927	0.0	1863
Msa1445790	MtrunA17_Chr8g0385811	95.811	931	34	2	1	931	1	926	0.0	1771
Msa1445790	MtrunA17_Chr3g0131711	89.689	931	87	4	1	931	1	922	0.0	1650
Msa1445790	MtrunA17_Chr3g0135231	81.728	602	71	7	1	597	1	568	0.0	947
Msa1445790	MtrunA17_Chr3g0135231	68.966	116	26	1	719	834	545	650	8.35e-39	154
Msa1445790	MtrunA17_Chr3g0102771	50.349	860	312	11	96	916	1	784	0.0	805
Msa1445790	MtrunA17_Chr3g0131351	46.296	864	411	13	96	916	100	953	0.0	752
Msa1445790	MtrunA17_Chr6g0454071	43.962	944	418	19	42	907	26	936	0.0	721
Msa1445790	MtrunA17_Chr7g0218421	44.176	910	399	16	76	907	62	940	0.0	720
Msa1445790	MtrunA17_Chr3g0137071	44.545	880	390	13	100	907	96	949	0.0	711

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
Msa1445790	AT5G50920.1	86.096	935	114	8	2	931	5	928	1555
Msa1445790	AT3G48870.2	84.719	890	128	3	32	920	21	903	1474
Msa1445790	AT3G48870.1	84.719	890	128	3	32	920	52	934	1474
Msa1445790	AT3G48870.4	84.719	890	128	3	32	920	52	934	1474
Msa1445790	AT3G48870.3	84.719	890	128	3	32	920	52	934	1474
Msa1445790	AT5G51070.1	48.778	859	386	10	95	911	78	924	769
Msa1445790	AT5G15450.1	43.418	942	428	17	43	907	20	933	711
Msa1445790	AT2G25140.1	43.062	908	413	14	91	921	77	957	709
Msa1445790	AT1G74310.1	42.202	872	416	14	98	906	4	850	653
Msa1445790	AT1G74310.2	42.566	834	391	14	98	868	4	812	628

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Find 282 sgRNAs with CRISPR-Local

Find 415 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATAATCCTTGTCTTATC+GGG	0.342428	tig0031177:+21809	Msa1445790:CDS
AAACCATACAAATATTGAAA+GGG	0.529564	tig0031177:+22910	Msa1445790:CDS
AAACTCATTGGTTCACCTCC+GGG	0.479765	tig0031177:+24324	Msa1445790:CDS
AAAGTATTGCTTCAGCTCCT+CGG	0.566849	tig0031177:-24649	None:intergenic
AAATAATCCTTGTCTTATCG+GGG	0.633520	tig0031177:+21810	Msa1445790:CDS
AACAAGTAGACCCATATCCA+GGG	0.641634	tig0031177:-22177	None:intergenic
AACAGGGATACCAGTCCAGG+CGG	0.697211	tig0031177:-24013	None:intergenic
AACCAAAGAGATTGAGCTCT+CGG	0.480234	tig0031177:+24785	Msa1445790:CDS
AACGTCCCCGGCCTAGTGGC+TGG	0.463587	tig0031177:+20435	Msa1445790:CDS
AAGAAGAAGATGGTCGGTCG+TGG	0.495997	tig0031177:-20003	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AGGCATGTCAATAATAACAA+TGG	+	tig0031177:20462-20481	Msa1445790:CDS	30.0%
ATAGAATCCAAAGAGTTCAA+AGG	-	tig0031177:20576-20595	None:intergenic	30.0%
CTTAGAATGAAAATCTTGTC+TGG	-	tig0031177:20607-20626	None:intergenic	30.0%
GTGGAAGTTGAAAAGATAAT+TGG	+	tig0031177:20873-20892	Msa1445790:CDS	30.0%
GTTGAAAAGATAATTGGAAG+GGG	+	tig0031177:20879-20898	Msa1445790:CDS	30.0%
TATTGCTTTGATTGATCTGA+TGG	+	tig0031177:21104-21123	Msa1445790:intron	30.0%
AATCTGTCACTAAGAAAACT+AGG	-	tig0031177:21642-21661	None:intergenic	30.0%
ATCAAAATCCTAGGGAAAAT+TGG	+	tig0031177:21723-21742	Msa1445790:intron	30.0%
AAATAATCCTTGTCTTATCG+GGG	+	tig0031177:21810-21829	Msa1445790:CDS	30.0%
TAATGTTGTGTTTAGTTGTG+TGG	-	tig0031177:22056-22075	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
tig0031177	gene	19967	25363	19967	ID=Msa1445790;Name=Msa1445790
tig0031177	mRNA	19967	25363	19967	ID=Msa1445790-mRNA-1;Parent=Msa1445790;Name=Msa1445790-mRNA-1;_AED=0.08;_eAED=0.08;_QI=122\|0.88\|0.8\|1\|0.88\|0.8\|10\|317\|931
tig0031177	exon	19967	20071	19967	ID=Msa1445790-mRNA-1:exon:15128;Parent=Msa1445790-mRNA-1
tig0031177	exon	20391	20987	20391	ID=Msa1445790-mRNA-1:exon:15129;Parent=Msa1445790-mRNA-1
tig0031177	exon	21281	21400	21281	ID=Msa1445790-mRNA-1:exon:15130;Parent=Msa1445790-mRNA-1
tig0031177	exon	21496	21626	21496	ID=Msa1445790-mRNA-1:exon:15131;Parent=Msa1445790-mRNA-1
tig0031177	exon	21736	21921	21736	ID=Msa1445790-mRNA-1:exon:15132;Parent=Msa1445790-mRNA-1
tig0031177	exon	22170	22385	22170	ID=Msa1445790-mRNA-1:exon:15133;Parent=Msa1445790-mRNA-1
tig0031177	exon	22804	23021	22804	ID=Msa1445790-mRNA-1:exon:15134;Parent=Msa1445790-mRNA-1
tig0031177	exon	23355	23430	23355	ID=Msa1445790-mRNA-1:exon:15135;Parent=Msa1445790-mRNA-1
tig0031177	exon	23520	23609	23520	ID=Msa1445790-mRNA-1:exon:15136;Parent=Msa1445790-mRNA-1
tig0031177	exon	23868	25363	23868	ID=Msa1445790-mRNA-1:exon:15137;Parent=Msa1445790-mRNA-1
tig0031177	five_prime_UTR	19967	20071	19967	ID=Msa1445790-mRNA-1:five_prime_utr;Parent=Msa1445790-mRNA-1
tig0031177	five_prime_UTR	20391	20407	20391	ID=Msa1445790-mRNA-1:five_prime_utr;Parent=Msa1445790-mRNA-1
tig0031177	CDS	20408	20987	20408	ID=Msa1445790-mRNA-1:cds;Parent=Msa1445790-mRNA-1
tig0031177	CDS	21281	21400	21281	ID=Msa1445790-mRNA-1:cds;Parent=Msa1445790-mRNA-1
tig0031177	CDS	21496	21626	21496	ID=Msa1445790-mRNA-1:cds;Parent=Msa1445790-mRNA-1
tig0031177	CDS	21736	21921	21736	ID=Msa1445790-mRNA-1:cds;Parent=Msa1445790-mRNA-1
tig0031177	CDS	22170	22385	22170	ID=Msa1445790-mRNA-1:cds;Parent=Msa1445790-mRNA-1
tig0031177	CDS	22804	23021	22804	ID=Msa1445790-mRNA-1:cds;Parent=Msa1445790-mRNA-1
tig0031177	CDS	23355	23430	23355	ID=Msa1445790-mRNA-1:cds;Parent=Msa1445790-mRNA-1
tig0031177	CDS	23520	23609	23520	ID=Msa1445790-mRNA-1:cds;Parent=Msa1445790-mRNA-1
tig0031177	CDS	23868	25046	23868	ID=Msa1445790-mRNA-1:cds;Parent=Msa1445790-mRNA-1
tig0031177	three_prime_UTR	25047	25363	25047	ID=Msa1445790-mRNA-1:three_prime_utr;Parent=Msa1445790-mRNA-1

Gene Sequence

>Msa1445790

ATGTCTAGGGTTTTGGCACAATCGATTAACGTCCCCGGCCTAGTGGCTGGTCGAAGGCATGTCAATAATAACAATGGATCCGCGAGATCAAGACCTAGGTCTGTCAGAATGATGTATGCTACACAAACTGCTACAATGCGAATGTCTGGTTTCTCTGGATTACGTCCTTTGAACTCTTTGGATTCTATGTTTAGACCCAGACAAGATTTTCATTCTAAGGTGCTCACTCAGATTGGTACTAATAGAGCAAGGGGTGGTAGAGGTAGCAGATGTGTAACTAGAGCCATGTTTGAGCGTTTCACGGAGAAAGCGATCAAAGTTATTATGCTGGCTCAAGAGGAAGCTAGGCGGCTGGGTCACAATTTTGTCGGAACAGAGCAAATTTTGTTGGGTCTTATTGGTGAAGGCACTGGTATTGGTGCTAAGGTTCTAAAGTCTATGGGAATTAACCTGAAAGACTCTCGCGTGGAAGTTGAAAAGATAATTGGAAGGGGTAGTGGTTTTGTCGCTGTTGAGATTCCGTTTACTCCGCGTGCCAAGAGAGTTTTGGAGCTCTCATTGGAGGAAGCTCGCCAACTTGGTCACAATTATATCGGATCTGAGCACCTGCTTTTGGGTCTTCTTCGAGAGGGTGAGGGTGTGGCCGCACGTGTTCTTGAAAATTTGGGTGCTGATCCAACTAATATTCGCACCCAGGCTAGGGAACAGGTTATTCGAATGGTTGGTGAGGGTGCTGACAATGTTGGGGCTACTGTTGGCTCTGGAAGTAGTAATAGCAAGATGCCAACTTTGGAGGAGTATGGCACCAATTTGACCAAGCTAGCAGAGGAGGGAAAATTGGATCCTGTTGTGGGTAGGCAGCCACAAATTGAACGTGTTACTCAAATCTTGGGTCGTCGCACCAAAAATAATCCTTGTCTTATCGGGGAACCTGGTGTCGGAAAGACAGCTATTGCTGAAGGTCTCGCCCAACGGATTGCAAATGGTGATGTCCCTGAAACCATAGAGGGAAAGCAGGTTATAACCCTGGATATGGGTCTACTTGTTGCTGGAACTAAATATCGTGGAGAATTTGAGGAGAGATTGAAAAAACTAATGGAGGAAATCAAGCAAAGTGATGAAATAATACTTTTCATAGATGAAGTGCACACTCTCATTGGAGCAGGAGCAGCTGAAGGGGCAATTGATGCGGCAAACATATTGAAACCAGCTCTTGCTAGAGGTGAACTACAGTGTATAGGAGCCACAACACTAGATGAATACAGGAAGCACATTGAAAAAGATCCAGCTTTGGAGAGGAGATTCCAGCCAGTTAAAGTGCCAGAGCCAACTGTGAGTGAAACCATACAAATATTGAAAGGGCTTAGAGAGCGCTATGAGATTCACCACAAGCTCCGTTATACCGATGATGCTCTTGTAGCTGCTGCAGAGCTGTCATATCAATATATCAGTGATCGATTTTTGCCTGACAAAGCTATAGATTTGATTGACGAAGCTGGTTCCCGAGTTCGACTTCAACATGCACAGTTACCTGAAGAAGCAAGAGGACTTGAAAAGGAGGTTAGGCAGATAGTTAAGGAGAAAGATGAAGCTGTTCGCAATCAAGAATTTGAAAAGGCTGGAGAGCTACGGGATAAAGAAATGGATCTTAAGGCTCAGATATCAGCACTTATACAAAAAAACAAGGAGATGAGCAAGGCAGAGAGTGAGGCAGGAGATGTAGGTGCACTTGTGACTGAAGTTGACATACAACATATTGTTGCCGCCTGGACTGGTATCCCTGTTGATAAAGTCTCAGTTGACGAATCTGATCGCCTTCTCAAGATGGAAGAGACCTTACACAAACGCATTATTGGTCAGCATGAAGCAGTAGAAGCCATTAGCCGTGCTATCCGCCGAGCTCGTGTTGGACTTAAGAACCCTAACCGGCCGATTGCCAGCTTCATCTTTTCTGGCCCTACTGGTGTGGGGAAGTCTGAGTTGGCCAAAACATTGGCCTCATACTACTTTGGATCTGAAGAAGCCATGATTCGGCTTGACATGAGCGAATTTATGGAACGACACACAGTCTCCAAACTCATTGGTTCACCTCCGGGATATGTTGGTTATACCGAGGGTGGTCAATTGACTGAGGCAGTTCGGCGCCGTCCCTATACTGTTGTACTCTTTGATGAGATTGAGAAAGCCCATCCTGATGTCTTCAACATGATGCTTCAAATTCTGGAAGATGGGAGGCTAACAGATAGTAAGGGAAGAACTGTCGACTTCAAGAACACACTTCTTATAATGACATCAAATGTTGGAAGCAGTGTGATTGAGAAAGGAGGCCGTCGCATAGGATTTGACCTTGACTATGATGAGAAGGACAGCAGTTATAACCGAATCAAAAGCTTGGTGACCGAGGAGCTGAAGCAATACTTTAGGCCAGAGTTCTTGAATAGGCTGGATGAAATGATTGTTTTCAGGCAACTTACAAAACTGGAGGTTAAGGAGATAGCTGATATAATGCTGAAGGAGGTGTTCGAGAGACTGAAAACCAAAGAGATTGAGCTCTCGGTGACAGAGAGATTTAGGGAGAGAGTGGTTGACGAAGGTTATAATCCTAGTTATGGTGCCAGACCTCTAAGAAGAGCTATAATGCGACTTTTGGAAGACAGCATGGCTGAGAAGATGCTTGCTAGAGAGATTAAAGAGGGTGACTCTGTTATAGTGGATGCTGATTCTGATGGAAATGTGATTGTGCTCAATGGTAGTAGTGGTGCTCCAAATTCATTGCCCGAGTCTCTTCCTGTGTAA

Protein sequence

>Msa1445790

MSRVLAQSINVPGLVAGRRHVNNNNGSARSRPRSVRMMYATQTATMRMSGFSGLRPLNSLDSMFRPRQDFHSKVLTQIGTNRARGGRGSRCVTRAMFERFTEKAIKVIMLAQEEARRLGHNFVGTEQILLGLIGEGTGIGAKVLKSMGINLKDSRVEVEKIIGRGSGFVAVEIPFTPRAKRVLELSLEEARQLGHNYIGSEHLLLGLLREGEGVAARVLENLGADPTNIRTQAREQVIRMVGEGADNVGATVGSGSSNSKMPTLEEYGTNLTKLAEEGKLDPVVGRQPQIERVTQILGRRTKNNPCLIGEPGVGKTAIAEGLAQRIANGDVPETIEGKQVITLDMGLLVAGTKYRGEFEERLKKLMEEIKQSDEIILFIDEVHTLIGAGAAEGAIDAANILKPALARGELQCIGATTLDEYRKHIEKDPALERRFQPVKVPEPTVSETIQILKGLRERYEIHHKLRYTDDALVAAAELSYQYISDRFLPDKAIDLIDEAGSRVRLQHAQLPEEARGLEKEVRQIVKEKDEAVRNQEFEKAGELRDKEMDLKAQISALIQKNKEMSKAESEAGDVGALVTEVDIQHIVAAWTGIPVDKVSVDESDRLLKMEETLHKRIIGQHEAVEAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKTLASYYFGSEEAMIRLDMSEFMERHTVSKLIGSPPGYVGYTEGGQLTEAVRRRPYTVVLFDEIEKAHPDVFNMMLQILEDGRLTDSKGRTVDFKNTLLIMTSNVGSSVIEKGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRQLTKLEVKEIADIMLKEVFERLKTKEIELSVTERFRERVVDEGYNPSYGARPLRRAIMRLLEDSMAEKMLAREIKEGDSVIVDADSDGNVIVLNGSSGAPNSLPESLPV*