AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0392450

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0392450 MtrunA17_Chr3g0077581 98.108 370 6 1 1 369 1 370 0.0 746
Msa0392450 MtrunA17_Chr2g0285061 56.471 340 144 3 32 369 28 365 1.61e-131 380
Msa0392450 MtrunA17_Chr8g0380041 56.932 339 141 4 33 369 28 363 1.45e-129 375
Msa0392450 MtrunA17_Chr3g0086641 54.867 339 148 4 33 369 35 370 1.13e-126 369
Msa0392450 MtrunA17_Chr3g0077571 47.727 352 174 7 20 369 14 357 1.19e-110 327
Msa0392450 MtrunA17_Chr3g0131321 42.077 366 202 6 8 367 6 367 4.81e-99 298
Msa0392450 MtrunA17_Chr8g0380031 45.428 339 170 8 33 369 81 406 1.18e-94 288
Msa0392450 MtrunA17_Chr2g0284951 44.970 338 169 6 33 367 30 353 1.47e-90 276
Msa0392450 MtrunA17_Chr2g0284991 43.491 338 179 5 33 367 30 358 3.78e-90 276
Msa0392450 MtrunA17_Chr2g0284921 43.188 345 180 8 30 369 28 361 1.93e-88 271
Msa0392450 MtrunA17_Chr4g0017431 40.563 355 200 6 19 369 16 363 8.10e-88 269
Msa0392450 MtrunA17_Chr3g0085881 44.807 337 169 9 33 367 30 351 8.15e-88 269
Msa0392450 MtrunA17_Chr2g0284941 43.195 338 159 6 33 367 30 337 1.34e-85 263
Msa0392450 MtrunA17_Chr2g0285001 42.059 340 182 7 33 367 30 359 3.49e-84 260
Msa0392450 MtrunA17_Chr4g0068441 40.469 341 191 9 32 366 31 365 8.23e-74 233
Msa0392450 MtrunA17_Chr2g0294311 40.571 350 186 10 32 366 28 370 2.13e-73 232
Msa0392450 MtrunA17_Chr2g0294301 41.071 336 184 11 38 366 37 365 3.34e-70 224
Msa0392450 MtrunA17_Chr7g0275021 34.973 366 230 8 7 369 6 366 5.94e-69 221
Msa0392450 MtrunA17_Chr5g0434621 40.683 322 177 10 38 354 27 339 1.41e-68 219
Msa0392450 MtrunA17_Chr1g0182811 38.938 339 190 9 37 366 34 364 1.75e-66 214
Msa0392450 MtrunA17_Chr8g0374101 39.645 338 192 9 38 366 39 373 4.26e-66 214
Msa0392450 MtrunA17_Chr5g0396511 36.283 339 200 9 38 368 48 378 2.19e-65 212
Msa0392450 MtrunA17_Chr7g0275011 35.714 364 220 7 9 369 14 366 1.13e-64 210
Msa0392450 MtrunA17_Chr1g0189901 37.202 336 203 8 37 368 32 363 5.36e-63 205
Msa0392450 MtrunA17_Chr1g0189931 34.146 369 230 9 4 368 5 364 5.69e-63 205
Msa0392450 MtrunA17_Chr3g0092131 40.506 316 176 9 38 348 25 333 1.35e-62 204
Msa0392450 MtrunA17_Chr7g0274991 35.119 336 211 7 37 369 34 365 4.50e-62 203
Msa0392450 MtrunA17_Chr1g0156911 33.243 367 223 9 1 357 1 355 1.26e-61 201
Msa0392450 MtrunA17_Chr1g0156931 33.043 345 213 8 4 343 13 344 1.85e-60 199
Msa0392450 MtrunA17_Chr4g0060811 38.413 315 184 7 38 348 29 337 1.72e-59 196
Msa0392450 MtrunA17_Chr3g0142921 35.542 332 195 10 29 349 29 352 8.04e-59 194
Msa0392450 MtrunA17_Chr7g0275001 34.706 340 216 5 33 369 22 358 8.20e-59 194
Msa0392450 MtrunA17_Chr4g0008851 33.424 368 224 10 8 369 14 366 9.47e-59 194
Msa0392450 MtrunA17_Chr5g0444401 35.920 348 202 11 31 367 23 360 1.86e-58 193
Msa0392450 MtrunA17_Chr3g0099161 34.758 351 208 9 30 369 86 426 2.43e-58 195
Msa0392450 MtrunA17_Chr3g0099151 34.188 351 211 9 30 369 81 422 2.51e-58 195
Msa0392450 MtrunA17_Chr7g0215961 33.973 365 219 8 8 369 7 352 5.90e-58 192
Msa0392450 MtrunA17_Chr1g0156901 33.750 320 199 7 27 341 41 352 6.51e-57 189
Msa0392450 MtrunA17_Chr6g0457921 34.203 345 218 8 30 369 22 362 2.33e-56 188
Msa0392450 MtrunA17_Chr5g0438621 37.500 328 179 12 33 348 27 340 6.14e-56 186
Msa0392450 MtrunA17_Chr3g0142941 33.538 325 203 8 22 341 33 349 1.06e-55 186
Msa0392450 MtrunA17_Chr2g0320671 36.364 319 193 8 34 348 28 340 1.71e-55 185
Msa0392450 MtrunA17_Chr3g0085231 34.808 339 197 9 34 367 29 348 3.73e-55 184
Msa0392450 MtrunA17_Chr3g0099231 32.951 349 210 10 30 366 22 358 5.27e-55 185
Msa0392450 MtrunA17_Chr1g0189891 36.499 337 200 10 37 369 30 356 3.49e-54 182
Msa0392450 MtrunA17_Chr5g0420811 33.528 343 203 10 30 366 27 350 3.65e-54 182
Msa0392450 MtrunA17_Chr5g0405821 36.070 341 190 13 29 355 36 362 2.70e-53 180
Msa0392450 MtrunA17_Chr1g0156891 33.036 336 211 8 12 341 19 346 5.50e-53 179
Msa0392450 MtrunA17_Chr1g0156921 32.615 325 202 10 24 341 31 345 6.16e-53 179
Msa0392450 MtrunA17_Chr5g0405831 34.278 353 206 11 5 347 17 353 8.80e-53 179
Msa0392450 MtrunA17_Chr2g0330781 34.259 324 198 8 34 350 29 344 1.02e-52 178
Msa0392450 MtrunA17_Chr8g0371491 35.077 325 196 9 29 346 29 345 1.56e-52 178
Msa0392450 MtrunA17_Chr8g0341001 34.688 320 198 8 34 348 30 343 3.39e-52 177
Msa0392450 MtrunA17_Chr4g0027521 34.154 325 195 10 34 348 25 340 8.12e-51 173
Msa0392450 MtrunA17_Chr2g0283191 31.928 332 203 8 33 348 35 359 1.71e-49 170
Msa0392450 MtrunA17_Chr5g0438631 33.750 320 201 8 34 348 26 339 1.72e-48 167
Msa0392450 MtrunA17_Chr3g0105401 33.535 331 205 10 33 357 25 346 1.85e-47 164
Msa0392450 MtrunA17_Chr5g0432101 33.746 323 192 11 38 349 35 346 5.16e-47 164
Msa0392450 MtrunA17_Chr5g0438641 32.087 321 208 8 33 349 29 343 5.31e-46 160
Msa0392450 MtrunA17_Chr3g0120861 31.889 323 210 8 30 348 32 348 2.31e-45 159
Msa0392450 MtrunA17_Chr8g0371471 28.242 347 238 8 8 349 12 352 1.38e-44 157
Msa0392450 MtrunA17_Chr5g0437421 33.540 322 191 7 33 341 29 340 1.59e-44 157
Msa0392450 MtrunA17_Chr6g0459921 33.740 246 160 3 124 369 119 361 6.03e-44 155
Msa0392450 MtrunA17_Chr8g0349321 31.135 379 223 14 4 366 6 362 6.67e-44 155
Msa0392450 MtrunA17_Chr8g0370951 31.549 355 211 12 30 366 25 365 7.13e-44 155
Msa0392450 MtrunA17_Chr8g0349341 30.053 376 227 13 4 366 10 362 3.52e-43 153
Msa0392450 MtrunA17_Chr8g0371481 27.966 354 242 9 1 349 8 353 1.14e-42 152
Msa0392450 MtrunA17_Chr4g0046151 28.775 351 231 9 3 343 7 348 3.19e-42 151
Msa0392450 MtrunA17_Chr6g0455661 33.600 250 159 4 120 369 230 472 5.73e-42 152
Msa0392450 MtrunA17_Chr6g0455661 59.000 100 40 1 35 134 30 128 1.27e-29 119
Msa0392450 MtrunA17_Chr2g0301641 30.294 340 218 11 37 366 44 374 1.82e-38 142
Msa0392450 MtrunA17_Chr1g0157001 30.058 346 210 8 41 367 41 373 3.53e-38 140
Msa0392450 MtrunA17_Chr8g0349301 31.402 328 192 12 1 318 3 307 7.68e-37 135
Msa0392450 MtrunA17_Chr8g0344931 28.846 364 236 11 10 366 11 358 3.66e-36 134
Msa0392450 MtrunA17_Chr8g0344941 28.615 325 217 8 36 353 41 357 6.96e-36 134
Msa0392450 MtrunA17_Chr8g0349331 27.926 376 203 13 4 366 10 330 3.62e-32 123
Msa0392450 MtrunA17_Chr1g0178931 30.794 315 184 11 37 341 38 328 1.43e-31 122
Msa0392450 MtrunA17_Chr4g0027571 36.364 176 108 3 173 347 37 209 6.91e-31 117
Msa0392450 MtrunA17_Chr1g0178941 29.781 319 190 10 37 341 41 339 2.68e-30 119
Msa0392450 MtrunA17_Chr8g0370981 26.478 389 226 11 30 367 38 417 4.78e-30 119
Msa0392450 MtrunA17_Chr8g0370961 30.242 248 151 8 131 367 7 243 4.98e-28 110
Msa0392450 MtrunA17_Chr7g0254461 27.941 340 206 13 33 344 40 368 9.01e-28 112
Msa0392450 MtrunA17_Chr7g0226911 26.263 396 242 10 4 365 3 382 2.03e-27 111
Msa0392450 MtrunA17_Chr2g0317271 27.513 378 227 14 3 361 6 355 2.57e-27 110
Msa0392450 MtrunA17_Chr2g0317261 27.056 377 228 14 4 361 7 355 1.75e-26 108
Msa0392450 MtrunA17_Chr8g0381581 27.596 337 206 12 35 344 39 364 6.71e-26 107
Msa0392450 MtrunA17_Chr0c01g0489581 27.056 377 228 14 4 361 7 355 1.12e-25 106
Msa0392450 MtrunA17_Chr5g0440501 25.703 249 168 7 130 367 7 249 1.73e-25 103
Msa0392450 MtrunA17_Chr0c01g0489571 27.056 377 228 14 4 361 7 355 3.00e-25 105
Msa0392450 MtrunA17_Chr1g0160011 26.567 335 213 10 35 347 39 362 3.02e-25 105
Msa0392450 MtrunA17_Chr1g0198381 28.165 316 191 12 37 341 3 293 4.05e-25 103
Msa0392450 MtrunA17_Chr7g0229581 38.971 136 81 2 213 347 8 142 7.03e-25 99.4
Msa0392450 MtrunA17_Chr1g0159981 26.571 350 221 11 35 360 45 382 7.94e-25 104
Msa0392450 MtrunA17_Chr1g0160031 26.786 336 211 11 35 347 38 361 2.22e-24 102
Msa0392450 MtrunA17_Chr2g0285041 40.833 120 69 2 89 207 1 119 3.53e-24 97.1
Msa0392450 MtrunA17_Chr7g0226931 25.323 387 232 10 5 348 7 379 3.97e-24 102
Msa0392450 MtrunA17_Chr7g0229591 34.659 176 107 5 34 206 28 198 4.11e-24 98.6
Msa0392450 MtrunA17_Chr6g0450731 24.868 378 243 11 1 363 6 357 6.80e-24 101
Msa0392450 MtrunA17_Chr1g0159991 26.377 345 228 10 35 360 35 372 1.44e-23 100
Msa0392450 MtrunA17_Chr7g0266061 28.302 318 189 12 37 341 43 334 1.57e-23 100
Msa0392450 MtrunA17_Chr1g0159971 26.857 350 221 10 38 363 49 387 2.54e-23 100
Msa0392450 MtrunA17_Chr1g0198351 28.528 326 176 13 37 341 44 333 4.90e-23 98.6
Msa0392450 MtrunA17_Chr6g0450721 25.543 368 219 13 3 349 8 341 1.15e-22 97.8
Msa0392450 MtrunA17_Chr6g0450701 27.616 344 203 11 33 349 36 360 2.14e-22 97.4
Msa0392450 MtrunA17_Chr3g0104821 26.706 337 208 13 38 349 46 368 6.61e-22 95.9
Msa0392450 MtrunA17_Chr8g0347751 26.870 361 221 11 38 369 38 384 1.03e-21 95.5
Msa0392450 MtrunA17_Chr7g0271551 27.083 336 215 12 38 360 38 356 1.16e-21 95.1
Msa0392450 MtrunA17_Chr6g0450711 27.059 340 206 11 35 349 121 443 1.75e-21 95.5
Msa0392450 MtrunA17_Chr1g0160101 26.254 339 206 10 35 344 41 364 2.67e-21 94.4
Msa0392450 MtrunA17_Chr7g0275291 25.210 357 220 11 38 365 35 373 2.92e-21 94.0
Msa0392450 MtrunA17_Chr6g0469511 48.421 95 46 2 34 125 28 122 2.95e-21 89.0
Msa0392450 MtrunA17_Chr7g0273101 26.453 344 207 12 35 348 28 355 4.68e-21 93.6
Msa0392450 MtrunA17_Chr7g0226941 25.905 359 228 10 15 348 14 359 8.99e-21 92.8
Msa0392450 MtrunA17_Chr2g0284931 28.163 245 145 8 128 369 4 220 1.53e-20 89.0
Msa0392450 MtrunA17_Chr2g0301581 28.485 330 194 14 38 349 36 341 4.02e-20 90.5
Msa0392450 MtrunA17_Chr2g0301541 28.182 330 195 14 38 349 36 341 1.22e-19 89.0
Msa0392450 MtrunA17_Chr4g0027561 44.681 94 49 2 34 124 28 121 1.59e-19 84.3
Msa0392450 MtrunA17_Chr2g0283511 25.672 335 207 13 41 348 36 355 1.92e-19 89.0
Msa0392450 MtrunA17_Chr8g0352901 26.685 356 220 11 35 363 27 368 2.15e-19 88.6
Msa0392450 MtrunA17_Chr1g0189921 45.918 98 51 2 30 125 25 122 2.44e-19 84.0
Msa0392450 MtrunA17_Chr3g0112821 24.847 326 220 11 38 349 32 346 3.18e-18 85.1
Msa0392450 MtrunA17_Chr2g0285051 60.317 63 25 0 28 90 28 90 8.45e-18 78.6
Msa0392450 MtrunA17_Chr2g0283501 25.344 363 234 12 16 350 3 356 2.39e-17 82.4
Msa0392450 MtrunA17_Chr8g0370971 39.655 116 63 2 30 138 32 147 5.13e-17 77.8
Msa0392450 MtrunA17_Chr2g0283481 25.373 335 212 13 38 348 49 369 8.57e-17 81.3
Msa0392450 MtrunA17_Chr3g0093031 24.316 329 223 11 38 349 32 351 1.25e-16 80.5
Msa0392450 MtrunA17_Chr2g0283531 26.087 368 232 15 6 349 3 354 1.59e-16 80.1
Msa0392450 MtrunA17_Chr3g0112691 26.807 332 209 16 38 349 32 349 3.77e-16 79.0
Msa0392450 MtrunA17_Chr2g0321991 38.843 121 64 5 3 119 5 119 4.83e-16 73.9
Msa0392450 MtrunA17_Chr4g0057991 22.881 354 239 12 5 341 13 349 5.31e-16 78.6
Msa0392450 MtrunA17_Chr1g0189911 29.452 146 98 5 226 368 3 146 2.73e-14 69.7
Msa0392450 MtrunA17_Chr1g0191461 24.207 347 210 11 35 348 30 356 7.21e-14 72.0
Msa0392450 MtrunA17_Chr2g0308201 53.571 56 26 0 34 89 33 88 1.05e-13 66.2
Msa0392450 MtrunA17_Chr6g0469521 34.400 125 80 2 210 333 29 152 2.51e-13 67.0
Msa0392450 MtrunA17_Chr7g0228261 38.372 86 52 1 285 369 7 92 3.21e-13 65.1
Msa0392450 MtrunA17_Chr8g0339251 26.460 291 191 9 35 318 27 301 7.95e-13 68.9
Msa0392450 MtrunA17_Chr2g0301571 27.740 292 168 14 76 349 31 297 1.90e-12 67.4
Msa0392450 MtrunA17_Chr1g0178951 40.909 88 46 2 37 120 18 103 3.16e-12 62.8
Msa0392450 MtrunA17_Chr4g0018571 34.228 149 95 3 201 347 18 165 3.47e-12 64.7
Msa0392450 MtrunA17_Chr3g0104831 25.564 266 164 11 106 349 34 287 1.51e-11 64.7
Msa0392450 MtrunA17_Chr2g0301551 27.740 292 168 14 76 349 31 297 3.31e-11 63.9
Msa0392450 MtrunA17_Chr4g0018561 57.692 52 21 1 34 84 28 79 3.50e-11 59.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0392450 AT1G33811.1 71.676 346 94 3 28 369 25 370 0.0 508
Msa0392450 AT4G18970.1 55.030 338 148 3 34 369 26 361 2.02e-124 363
Msa0392450 AT4G18970.2 55.193 337 147 3 35 369 27 361 4.54e-123 361
Msa0392450 AT5G45670.1 54.599 337 149 3 35 369 28 362 6.79e-122 356
Msa0392450 AT1G29670.1 50.276 362 170 6 12 369 8 363 3.30e-121 355
Msa0392450 AT1G29670.2 50.276 362 170 6 12 369 76 431 1.69e-120 355
Msa0392450 AT1G29660.1 51.917 339 158 4 33 369 29 364 5.83e-115 339
Msa0392450 AT1G71691.2 47.774 337 169 6 34 369 53 383 2.65e-105 315
Msa0392450 AT5G15720.1 49.412 340 163 8 35 369 29 364 9.06e-102 305
Msa0392450 AT1G71250.1 46.023 352 181 6 24 369 25 373 3.52e-100 301
Msa0392450 AT5G08460.1 44.282 341 181 6 35 369 48 385 3.70e-93 284
Msa0392450 AT2G19010.1 42.136 337 180 6 31 367 25 346 1.52e-90 276
Msa0392450 AT2G19010.2 42.136 337 180 6 31 367 55 376 8.90e-90 275
Msa0392450 AT2G19050.1 42.183 339 181 6 31 369 26 349 3.51e-85 262
Msa0392450 AT4G30140.1 42.899 338 174 7 30 366 27 346 3.63e-85 262
Msa0392450 AT2G19060.1 41.618 346 187 6 24 368 18 349 3.75e-84 259
Msa0392450 AT1G71691.1 43.509 285 154 6 86 369 4 282 8.58e-77 238
Msa0392450 AT5G15720.3 44.369 293 155 7 82 369 44 333 1.47e-75 237
Msa0392450 AT5G15720.2 48.507 268 130 7 35 298 29 292 3.82e-71 225
Msa0392450 AT2G23540.1 39.142 373 212 9 6 366 15 384 3.84e-71 227
Msa0392450 AT1G71691.3 46.038 265 137 5 34 298 53 311 6.08e-71 224
Msa0392450 AT3G50400.1 40.643 342 190 9 38 369 36 374 3.58e-68 219
Msa0392450 AT5G37690.1 38.938 339 197 8 13 348 4 335 1.89e-67 217
Msa0392450 AT2G19050.2 43.130 262 139 3 31 292 26 277 3.34e-67 214
Msa0392450 AT4G10950.2 36.728 324 197 6 28 348 63 381 3.24e-65 213
Msa0392450 AT4G28780.1 35.121 373 228 10 1 369 1 363 1.61e-64 209
Msa0392450 AT3G04290.1 36.499 337 207 6 36 369 29 361 4.60e-63 206
Msa0392450 AT4G10950.1 35.802 324 196 6 28 348 63 377 1.90e-62 205
Msa0392450 AT5G37690.2 38.053 339 192 9 13 348 4 327 3.23e-62 203
Msa0392450 AT5G22810.1 35.244 349 214 8 8 348 3 347 1.73e-61 201
Msa0392450 AT1G74460.1 40.379 317 175 10 38 348 25 333 3.83e-61 201
Msa0392450 AT5G41890.1 34.974 386 209 10 1 366 9 372 6.28e-61 201
Msa0392450 AT5G33370.1 33.807 352 222 7 20 366 14 359 1.73e-60 199
Msa0392450 AT5G18430.1 34.731 334 207 6 36 363 28 356 8.94e-60 197
Msa0392450 AT1G75890.2 35.159 347 212 10 8 348 19 358 1.12e-59 197
Msa0392450 AT1G75890.3 35.159 347 212 10 8 348 48 387 1.90e-59 197
Msa0392450 AT5G55050.1 33.237 346 209 10 34 366 37 373 4.18e-57 191
Msa0392450 AT1G75890.1 33.983 359 213 10 8 348 19 371 9.68e-57 190
Msa0392450 AT1G75880.2 33.807 352 219 11 5 349 20 364 1.94e-54 184
Msa0392450 AT1G75880.1 33.807 352 220 10 5 349 20 365 2.19e-54 183
Msa0392450 AT3G53100.1 33.742 326 204 8 28 348 21 339 8.89e-52 176
Msa0392450 AT3G14820.1 32.615 325 200 9 34 349 30 344 1.33e-51 176
Msa0392450 AT5G03820.1 34.268 321 199 8 34 348 31 345 6.44e-51 174
Msa0392450 AT5G03820.2 34.268 321 199 8 34 348 59 373 1.71e-50 174
Msa0392450 AT5G42170.1 32.399 321 204 8 27 343 41 352 2.82e-50 172
Msa0392450 AT1G59406.1 32.399 321 202 10 28 343 22 332 4.83e-50 171
Msa0392450 AT1G59030.1 32.399 321 202 10 28 343 22 332 4.83e-50 171
Msa0392450 AT1G58725.1 32.399 321 202 10 28 343 22 332 4.83e-50 171
Msa0392450 AT2G04570.1 33.642 324 201 9 33 350 25 340 8.58e-50 171
Msa0392450 AT1G20120.1 34.056 323 195 10 35 349 77 389 2.96e-49 171
Msa0392450 AT3G16370.1 34.462 325 202 9 31 350 25 343 3.35e-49 169
Msa0392450 AT5G03810.1 33.438 320 202 8 34 348 28 341 1.27e-48 168
Msa0392450 AT1G75900.1 30.792 341 213 10 10 341 19 345 1.45e-48 168
Msa0392450 AT2G03980.2 32.938 337 200 13 31 356 38 359 8.33e-48 166
Msa0392450 AT2G03980.3 32.938 337 200 13 31 356 38 359 8.33e-48 166
Msa0392450 AT2G03980.1 32.938 337 200 13 31 356 38 359 8.33e-48 166
Msa0392450 AT2G03980.4 32.938 337 200 13 31 356 38 359 8.33e-48 166
Msa0392450 AT4G16230.1 44.498 209 108 6 31 235 25 229 3.09e-47 161
Msa0392450 AT1G73610.1 33.654 312 184 9 34 341 33 325 4.53e-46 161
Msa0392450 AT1G20132.1 31.532 333 205 10 30 349 55 377 6.56e-46 161
Msa0392450 AT1G20130.2 31.595 326 204 9 30 343 178 496 1.60e-45 163
Msa0392450 AT1G20130.1 31.595 326 204 9 30 343 198 516 2.23e-45 163
Msa0392450 AT2G42990.1 31.902 326 204 9 31 348 23 338 1.68e-44 157
Msa0392450 AT1G06990.1 30.721 319 210 8 35 348 36 348 4.58e-44 156
Msa0392450 AT2G31540.1 32.268 313 200 10 35 341 34 340 8.49e-44 155
Msa0392450 AT4G26790.1 30.625 320 212 7 33 348 26 339 1.43e-43 154
Msa0392450 AT4G26790.2 30.625 320 212 7 33 348 26 339 1.43e-43 154
Msa0392450 AT2G40250.1 28.395 324 216 8 34 348 34 350 2.63e-43 154
Msa0392450 AT2G30310.1 29.841 315 209 10 35 343 33 341 2.77e-43 154
Msa0392450 AT1G58430.1 30.380 316 202 11 35 341 34 340 6.47e-43 153
Msa0392450 AT2G30220.1 30.696 316 205 10 35 343 32 340 6.80e-43 153
Msa0392450 AT1G58520.3 31.056 322 200 11 27 343 21 325 9.87e-43 152
Msa0392450 AT1G58525.1 31.056 322 200 11 27 343 21 325 9.87e-43 152
Msa0392450 AT2G24560.1 30.351 313 206 10 35 341 33 339 4.53e-42 150
Msa0392450 AT1G75920.2 33.746 323 194 9 32 349 25 332 4.91e-42 150
Msa0392450 AT5G33370.2 33.798 287 169 6 20 302 14 283 5.25e-42 150
Msa0392450 AT1G20135.1 32.573 307 187 10 40 343 33 322 9.70e-42 149
Msa0392450 AT1G23500.1 34.365 323 182 11 34 348 33 333 1.66e-41 149
Msa0392450 AT5G63170.1 30.530 321 189 10 33 343 25 321 7.86e-41 147
Msa0392450 AT3G43570.1 28.190 337 199 9 11 343 6 303 8.96e-41 146
Msa0392450 AT5G45950.1 31.212 330 209 12 32 356 36 352 1.48e-39 144
Msa0392450 AT1G71120.1 30.409 342 216 9 34 367 29 356 1.59e-39 144
Msa0392450 AT5G45960.1 28.698 338 210 10 22 341 30 354 7.59e-39 142
Msa0392450 AT1G75930.1 33.851 322 183 11 38 349 31 332 1.03e-38 141
Msa0392450 AT1G75920.1 32.249 338 194 10 32 349 20 342 3.82e-38 140
Msa0392450 AT3G14225.2 31.195 343 217 11 38 369 39 373 5.37e-37 137
Msa0392450 AT3G14225.1 31.304 345 218 11 38 369 39 377 1.83e-36 136
Msa0392450 AT3G43550.1 30.034 293 190 10 10 298 5 286 6.57e-36 132
Msa0392450 AT5G40990.1 31.304 345 218 11 36 369 37 373 3.15e-35 133
Msa0392450 AT1G75910.1 30.312 320 204 8 35 349 27 332 6.03e-35 131
Msa0392450 AT1G75920.3 30.841 321 175 9 32 349 25 301 2.91e-32 123
Msa0392450 AT2G04020.1 36.792 212 121 5 31 238 38 240 7.11e-32 121
Msa0392450 AT2G04020.2 30.330 333 172 11 31 356 38 317 1.80e-31 121
Msa0392450 AT1G53920.1 28.857 350 218 12 34 366 46 381 3.46e-31 122
Msa0392450 AT1G75920.4 32.203 295 180 9 60 349 25 304 5.19e-31 120
Msa0392450 AT2G24560.2 30.147 272 178 10 35 300 33 298 1.42e-29 116
Msa0392450 AT1G53940.2 30.484 351 213 14 36 369 39 375 6.22e-29 115
Msa0392450 AT1G54020.2 26.087 345 226 11 31 368 26 348 9.79e-28 112
Msa0392450 AT1G54010.1 26.211 351 233 11 26 368 24 356 1.07e-27 112
Msa0392450 AT1G53990.1 28.042 378 238 13 5 369 8 364 2.82e-27 111
Msa0392450 AT3G09930.2 28.750 320 189 11 37 341 40 335 1.01e-26 109
Msa0392450 AT3G09930.1 28.750 320 189 11 37 341 40 335 1.01e-26 109
Msa0392450 AT1G54000.1 26.836 354 227 13 26 368 24 356 1.26e-26 109
Msa0392450 AT1G54030.1 27.976 336 214 14 37 369 53 363 3.30e-26 108
Msa0392450 AT5G03610.1 28.481 316 192 14 38 341 45 338 4.67e-25 104
Msa0392450 AT1G28570.1 26.862 376 230 17 1 349 1 358 1.79e-24 103
Msa0392450 AT3G14220.1 29.240 342 216 14 33 367 29 351 4.72e-24 102
Msa0392450 AT3G05180.1 29.619 341 200 15 35 348 35 362 3.06e-23 100
Msa0392450 AT4G16233.1 42.063 126 70 3 246 369 6 130 3.25e-23 94.4
Msa0392450 AT1G56670.1 25.263 380 232 14 7 360 10 363 1.08e-22 98.6
Msa0392450 AT3G14210.1 27.019 359 212 16 31 368 29 358 1.37e-22 98.6
Msa0392450 AT3G27950.1 25.915 355 230 10 35 369 31 372 1.57e-22 98.2
Msa0392450 AT5G03600.1 28.261 322 189 12 32 341 10 301 2.72e-22 96.7
Msa0392450 AT5G03600.2 28.261 322 189 12 32 341 45 336 3.79e-22 96.7
Msa0392450 AT1G31550.2 25.826 333 209 12 40 348 40 358 4.18e-22 97.1
Msa0392450 AT2G31550.1 28.947 190 129 5 154 341 14 199 5.24e-22 93.6
Msa0392450 AT1G09390.1 25.731 342 228 9 32 360 33 361 5.40e-22 96.3
Msa0392450 AT3G62280.1 28.367 349 215 14 30 362 30 359 9.61e-22 95.5
Msa0392450 AT1G31550.1 25.301 332 209 12 40 348 40 355 1.72e-21 95.1
Msa0392450 AT1G28580.1 25.532 376 231 15 1 350 10 362 2.51e-21 94.7
Msa0392450 AT1G54790.3 25.212 353 236 11 33 364 29 374 3.29e-21 94.4
Msa0392450 AT3G26430.1 27.083 336 209 12 35 344 30 355 3.88e-21 94.0
Msa0392450 AT1G28590.1 26.254 339 203 13 40 349 40 360 6.99e-21 93.6
Msa0392450 AT2G27360.1 25.434 346 224 14 40 362 37 371 7.13e-21 93.6
Msa0392450 AT4G16220.1 47.826 115 56 3 31 142 25 138 8.29e-21 90.9
Msa0392450 AT4G01130.1 25.513 341 213 11 38 350 36 363 9.86e-21 92.8
Msa0392450 AT1G67830.1 25.072 347 212 11 33 347 27 357 9.95e-21 92.8
Msa0392450 AT5G14450.1 25.843 356 228 10 35 365 40 384 4.05e-20 91.3
Msa0392450 AT1G28600.1 25.225 333 211 12 40 348 35 353 1.86e-18 86.3
Msa0392450 AT2G36325.1 26.331 357 216 16 6 341 10 340 3.69e-18 85.1
Msa0392450 AT1G54020.1 24.382 283 189 8 90 368 1 262 5.78e-18 83.6
Msa0392450 AT1G54020.5 24.382 283 189 8 90 368 1 262 5.78e-18 83.6
Msa0392450 AT1G54020.3 24.382 283 189 8 90 368 1 262 5.78e-18 83.6
Msa0392450 AT1G54790.1 24.438 356 231 12 35 364 30 373 9.47e-18 84.3
Msa0392450 AT5G45910.1 29.240 342 211 16 25 343 20 353 1.27e-17 84.0
Msa0392450 AT1G28610.2 23.416 363 234 13 24 357 19 366 2.25e-17 83.2
Msa0392450 AT1G53940.1 29.520 271 166 12 36 296 39 294 2.52e-17 82.0
Msa0392450 AT3G48460.1 23.565 331 220 13 38 348 40 357 5.30e-17 82.0
Msa0392450 AT1G28650.1 24.058 345 224 14 40 360 41 371 7.77e-17 81.6
Msa0392450 AT1G28640.1 24.650 357 207 14 40 360 39 369 2.08e-16 80.5
Msa0392450 AT1G28670.1 23.867 331 210 12 40 343 39 354 4.02e-15 76.6
Msa0392450 AT1G28660.1 25.000 352 191 15 40 349 39 359 7.36e-15 75.9
Msa0392450 AT1G28660.2 25.356 351 190 16 40 349 39 358 2.54e-14 73.9
Msa0392450 AT1G54020.4 25.822 213 144 7 162 368 9 213 3.40e-14 72.0
Msa0392450 AT1G54790.2 23.560 382 228 14 35 364 30 399 1.08e-13 72.4
Msa0392450 AT3G14210.2 25.106 235 155 8 146 368 5 230 1.71e-13 70.5
Msa0392450 AT4G01130.2 24.638 276 180 9 38 298 36 298 1.82e-13 71.2
Msa0392450 AT3G62280.2 27.143 280 171 11 30 294 30 291 1.12e-12 68.6
Msa0392450 AT4G01130.3 23.239 284 181 9 95 350 3 277 4.06e-12 66.6
Msa0392450 AT1G56670.2 23.323 313 194 11 7 298 10 297 1.04e-11 65.5

Find 99 sgRNAs with CRISPR-Local

Find 277 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTGCCATGTTTCTTCATATT+TGG 0.151987 3_2:+5611014 Msa0392450:CDS
AAACCCCTTGCTCTTGAATT+TGG 0.162052 3_2:-5611459 None:intergenic
TGCCAATTGTTGGATATTAA+TGG 0.219897 3_2:-5615298 None:intergenic
GTTACAGCAGTTGGTCAAAT+TGG 0.223495 3_2:+5612457 Msa0392450:CDS
AGCAAATGCATATATTATTC+AGG 0.228493 3_2:+5611775 Msa0392450:CDS
TATAATTGCAGCTCAACTTT+TGG 0.269085 3_2:+5611416 Msa0392450:intron
TATGAATTAGCACGTATTAA+TGG 0.270158 3_2:+5612490 Msa0392450:CDS
GGCGACTCATTGGTTGATAA+TGG 0.292013 3_2:+5611035 Msa0392450:CDS
TCCAGCAATTACATTCATTA+GGG 0.299031 3_2:+5612419 Msa0392450:intron
ATCGTGGGAAATATTTGTTT+TGG 0.314915 3_2:+5615199 Msa0392450:CDS
GCCAATTGTTGGATATTAAT+GGG 0.327993 3_2:-5615297 None:intergenic
AGTGCAGATCTAGCATTAAA+TGG 0.346283 3_2:+5612649 Msa0392450:CDS
GTCCAGCAATTACATTCATT+AGG 0.349350 3_2:+5612418 Msa0392450:intron
TATCAATGGAGGGCAGCTTC+CGG 0.349478 3_2:+5612591 Msa0392450:CDS
ATCAATGGAGGGCAGCTTCC+GGG 0.356171 3_2:+5612592 Msa0392450:CDS
CGAACCTTCGTCGATGCATT+AGG 0.365692 3_2:+5611152 Msa0392450:CDS
AGGGCTAATTATCGACCTTA+TGG 0.366890 3_2:+5611086 Msa0392450:CDS
TCCCATTAATATCCAACAAT+TGG 0.374975 3_2:+5615296 Msa0392450:CDS
TCTAAAGCATTGCCAATTGT+TGG 0.375039 3_2:-5615308 None:intergenic
CAGTCATGAAATAGTTGTTC+AGG 0.377347 3_2:-5611816 None:intergenic
CCCCTTGCTCTTGAATTTGG+AGG 0.378814 3_2:-5611456 None:intergenic
CTTCATATTTGGCGACTCAT+TGG 0.380484 3_2:+5611025 Msa0392450:CDS
AGGGCAGATGCAAAAGCTTT+AGG 0.387451 3_2:-5611868 None:intergenic
AAATTCAAGAGCAAGGGGTT+TGG 0.392526 3_2:+5611461 Msa0392450:CDS
TGCATATATTATTCAGGGTT+GGG 0.404381 3_2:+5611781 Msa0392450:CDS
AAATTTCCTTTGTACACGTA+TGG 0.408909 3_2:+5615444 Msa0392450:three_prime_UTR
TCCTACAAAATGTTTGTCTC+AGG 0.412148 3_2:+5610962 Msa0392450:CDS
AGCATTAAATGGAAAATCAA+TGG 0.419825 3_2:+5612660 Msa0392450:CDS
CATGGCACTTGTTGTCCCTC+TGG 0.421677 3_2:-5610999 None:intergenic
AGAGGAGTCAATTATGCATC+TGG 0.423551 3_2:+5611492 Msa0392450:CDS
TTAATTTACTCACAGATAGT+TGG 0.426379 3_2:-5611909 None:intergenic
CAAATGAGAAGGTTCTTTAG+AGG 0.429552 3_2:+5611724 Msa0392450:CDS
AATTAGCCCTAGCAAGTGTT+AGG 0.433591 3_2:-5611073 None:intergenic
TAAGACCTGAGTTAAAATAC+TGG 0.436936 3_2:-5612552 None:intergenic
TCTTCACATACTTGTTGTAA+TGG 0.441043 3_2:-5615177 None:intergenic
GCAGGCATCAGAGAGGAAAC+AGG 0.442089 3_2:+5611519 Msa0392450:CDS
AGGGGTTTGGACCTTCTTAG+AGG 0.442660 3_2:+5611474 Msa0392450:CDS
ACTGAGCAAGTGACAAACTT+TGG 0.446748 3_2:+5611688 Msa0392450:CDS
TTACAGCAGTTGGTCAAATT+GGG 0.452443 3_2:+5612458 Msa0392450:CDS
ATGCATATATTATTCAGGGT+TGG 0.453650 3_2:+5611780 Msa0392450:CDS
GTTAATCTTCTCATTGCATC+CGG 0.456244 3_2:-5612521 None:intergenic
TTAATACGTGCTAATTCATA+TGG 0.463074 3_2:-5612487 None:intergenic
AATAATATATGCATTTGCTT+AGG 0.472093 3_2:-5611771 None:intergenic
GCAAATGCATATATTATTCA+GGG 0.476578 3_2:+5611776 Msa0392450:CDS
ATCGACGAAGGTTCGACCAT+TGG 0.483856 3_2:-5611144 None:intergenic
CACATACTTGTTGTAATGGA+AGG 0.499795 3_2:-5615173 None:intergenic
TCCTCCAAATTCAAGAGCAA+GGG 0.502054 3_2:+5611455 Msa0392450:CDS
GCATTAAATGGAAAATCAAT+GGG 0.502185 3_2:+5612661 Msa0392450:CDS
AATTTCCTTTGTACACGTAT+GGG 0.507719 3_2:+5615445 Msa0392450:three_prime_UTR
AATTATGCATCTGGAGCAGC+AGG 0.508819 3_2:+5611501 Msa0392450:CDS
CAATTAGTTCAGAATATCAA+TGG 0.510533 3_2:+5612577 Msa0392450:CDS
ATGGGATCCTAACACTTGCT+AGG 0.512016 3_2:+5611066 Msa0392450:CDS
AAAATGTTGGCCAACTCAGT+TGG 0.512592 3_2:-5615234 None:intergenic
TGTGGGAAGTCGATGCCATA+AGG 0.521963 3_2:-5611101 None:intergenic
TGCTTTCCACCCAACTGAGT+TGG 0.522513 3_2:+5615224 Msa0392450:CDS
AAATGTTGGCCAACTCAGTT+GGG 0.523121 3_2:-5615233 None:intergenic
TTCCTCCAAATTCAAGAGCA+AGG 0.526404 3_2:+5611454 Msa0392450:CDS
CATAATTGACTCCTCTAAGA+AGG 0.526704 3_2:-5611485 None:intergenic
AAGCGACCGGTGGGACCTTG+TGG 0.527657 3_2:-5611119 None:intergenic
TTGATAATGGAAACAACAAT+GGG 0.532524 3_2:+5611048 Msa0392450:CDS
GACAAGGGATGCTGTGGTGT+TGG 0.534229 3_2:+5615126 Msa0392450:CDS
GGCGAGCGTAGTCTTGAAGA+AGG 0.538225 3_2:-5611888 None:intergenic
GTTGATAATGGAAACAACAA+TGG 0.544775 3_2:+5611047 Msa0392450:CDS
AGCGACCGGTGGGACCTTGT+GGG 0.545059 3_2:-5611118 None:intergenic
AAAGTGATCGTTACAGCAGT+TGG 0.549990 3_2:+5612448 Msa0392450:CDS
TTGTGAACTGTATGATGCCT+TGG 0.550217 3_2:-5615262 None:intergenic
TCGACCATTGGTGAAGCGAC+CGG 0.554522 3_2:-5611132 None:intergenic
AACAAGTATGTGAAGATCGT+GGG 0.555057 3_2:+5615184 Msa0392450:CDS
GACTTCCCACAAGGTCCCAC+CGG 0.565595 3_2:+5611113 Msa0392450:CDS
CGTATTAATGGTAACATCAC+CGG 0.574338 3_2:+5612502 Msa0392450:CDS
CCCACCGGTCGCTTCACCAA+TGG 0.577167 3_2:+5611128 Msa0392450:CDS
TCATATTGTTCATTTGTGTG+TGG 0.579622 3_2:+5615346 Msa0392450:three_prime_UTR
AGAGGAAACAGGCAGTAACC+TGG 0.589288 3_2:+5611530 Msa0392450:CDS
CCTCCAAATTCAAGAGCAAG+GGG 0.596481 3_2:+5611456 Msa0392450:CDS
CAACAAGTATGTGAAGATCG+TGG 0.597220 3_2:+5615183 Msa0392450:CDS
ACCATTGGTGAAGCGACCGG+TGG 0.597222 3_2:-5611129 None:intergenic
ACCTGAGTTAAAATACTGGA+TGG 0.601483 3_2:-5612548 None:intergenic
TGGGATCCTAACACTTGCTA+GGG 0.606593 3_2:+5611067 Msa0392450:CDS
TGTTGTCCCTCTGGTTGCCG+TGG 0.608787 3_2:-5610990 None:intergenic
CCAGCAATTACATTCATTAG+GGG 0.609332 3_2:+5612420 Msa0392450:intron
AGGGTTTGATGTGGTAGACA+AGG 0.614118 3_2:+5615110 Msa0392450:intron
TTAGTTCAGAATATCAATGG+AGG 0.620340 3_2:+5612580 Msa0392450:CDS
TGTTGGCCAACTCAGTTGGG+TGG 0.627367 3_2:-5615230 None:intergenic
ACACAGTGCAACAAATGAGA+AGG 0.629161 3_2:+5611713 Msa0392450:CDS
ATTACCTAATGCATCGACGA+AGG 0.630153 3_2:-5611156 None:intergenic
TGCCTTGGCTAGTAAAATGT+TGG 0.633274 3_2:-5615247 None:intergenic
TAGTTCAGAATATCAATGGA+GGG 0.636717 3_2:+5612581 Msa0392450:CDS
ATCAACCCATACGTGTACAA+AGG 0.639607 3_2:-5615450 None:intergenic
TTATGATACAGGGTTTGATG+TGG 0.642111 3_2:+5615101 Msa0392450:intron
TCGCCAAATATGAAGAAACA+TGG 0.643194 3_2:-5611017 None:intergenic
GGGTTTGATGTGGTAGACAA+GGG 0.645221 3_2:+5615111 Msa0392450:intron
GTGGTAGACAAGGGATGCTG+TGG 0.654624 3_2:+5615120 Msa0392450:CDS
GCGAGCGTAGTCTTGAAGAA+GGG 0.654662 3_2:-5611887 None:intergenic
TGTGGTGTTGGCAGAAACAA+TGG 0.658260 3_2:+5615138 Msa0392450:CDS
CTATAAGACAACACACACCA+TGG 0.664970 3_2:-5615410 None:intergenic
TATGGCATCGACTTCCCACA+AGG 0.673822 3_2:+5611104 Msa0392450:CDS
CCATTGGTGAAGCGACCGGT+GGG 0.674337 3_2:-5611128 None:intergenic
ATATTGATCATAAATGTCCA+TGG 0.677023 3_2:+5615393 Msa0392450:three_prime_UTR
TGGAGCAGCAGGCATCAGAG+AGG 0.700418 3_2:+5611512 Msa0392450:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATAAAACAAAAAAAAAAG+GGG - chr3_2:5613309-5613328 None:intergenic 10.0%
!!! TTACTATATTTTCTTAATTT+TGG + chr3_2:5613455-5613474 Msa0392450:intron 10.0%
!!! TACTATATTTTCTTAATTTT+GGG + chr3_2:5613456-5613475 Msa0392450:intron 10.0%
!!! TATGAAATATATTTTTAAGT+AGG - chr3_2:5613669-5613688 None:intergenic 10.0%
!!! TAGTTTGTTAATTTATTTAA+AGG - chr3_2:5613906-5613925 None:intergenic 10.0%
!! TAACATATATATATTTAAGT+AGG + chr3_2:5614716-5614735 Msa0392450:intron 10.0%
!! AACATATATATATTTAAGTA+GGG + chr3_2:5614717-5614736 Msa0392450:intron 10.0%
!! ATAAATAAATTCTCTTATAG+TGG + chr3_2:5611213-5611232 Msa0392450:intron 15.0%
!!! TTTTGAATCATTCTTTAAAT+CGG - chr3_2:5611328-5611347 None:intergenic 15.0%
!! AGGAAAACATATATTATTTA+TGG - chr3_2:5613379-5613398 None:intergenic 15.0%
!!! ACTATATTTTCTTAATTTTG+GGG + chr3_2:5613457-5613476 Msa0392450:intron 15.0%
!! ATATGTATTCATACTAATTT+AGG + chr3_2:5614053-5614072 Msa0392450:intron 15.0%
!! ATAAAAATAGTTTATGCATA+AGG - chr3_2:5614156-5614175 None:intergenic 15.0%
!! AAGTTAAAATATAGTCAAAT+TGG + chr3_2:5614181-5614200 Msa0392450:intron 15.0%
!! ATTAAGTGATTATACAAATT+GGG + chr3_2:5614605-5614624 Msa0392450:intron 15.0%
!!! AATTTTCTTTTTATGTATGC+AGG + chr3_2:5611648-5611667 Msa0392450:intron 20.0%
!!! ATTTTCTTTTTATGTATGCA+GGG + chr3_2:5611649-5611668 Msa0392450:intron 20.0%
!! AATAATATATGCATTTGCTT+AGG - chr3_2:5611774-5611793 None:intergenic 20.0%
!! TTCTTATTGATCAAAAACAA+TGG + chr3_2:5612916-5612935 Msa0392450:intron 20.0%
!!! AACCATTTTTTAACAACTTT+TGG - chr3_2:5613001-5613020 None:intergenic 20.0%
!! TATCATTTCTCATTATACAT+AGG + chr3_2:5613028-5613047 Msa0392450:intron 20.0%
!! AATGAAACTAATGCTTTAAT+GGG - chr3_2:5613262-5613281 None:intergenic 20.0%
!!! GAAAACGTATATTTTTTTCA+GGG - chr3_2:5613402-5613421 None:intergenic 20.0%
!!! AATACATTACCTAGAATTTT+AGG - chr3_2:5613424-5613443 None:intergenic 20.0%
!!! TTATTTTTTGATCCATAAGT+AGG - chr3_2:5613639-5613658 None:intergenic 20.0%
!!! AAGTTGCATTTTTATTTTAC+CGG - chr3_2:5614367-5614386 None:intergenic 20.0%
!! AAAAAAATTAAGTGAAAGAG+AGG + chr3_2:5614452-5614471 Msa0392450:intron 20.0%
!! ATACAAAAAAGAAATGATTC+AGG + chr3_2:5614546-5614565 Msa0392450:intron 20.0%
!! GATTAAGTGATTATACAAAT+TGG + chr3_2:5614604-5614623 Msa0392450:intron 20.0%
!! TTAAGTGATTATACAAATTG+GGG + chr3_2:5614606-5614625 Msa0392450:intron 20.0%
!!! TTGATAATGGAAACAACAAT+GGG + chr3_2:5611048-5611067 Msa0392450:CDS 25.0%
! CCTAATCATAAAATAGAAAC+CGG + chr3_2:5611259-5611278 Msa0392450:intron 25.0%
! CTAATCATAAAATAGAAACC+GGG + chr3_2:5611260-5611279 Msa0392450:intron 25.0%
! TAATCATAAAATAGAAACCG+GGG + chr3_2:5611261-5611280 Msa0392450:intron 25.0%
!!! AATCATTTGTTTCTAACGTT+AGG + chr3_2:5611300-5611319 Msa0392450:intron 25.0%
!!! ATCATTTGTTTCTAACGTTA+GGG + chr3_2:5611301-5611320 Msa0392450:intron 25.0%
! AAGAATATATATGCAATACC+AGG - chr3_2:5611551-5611570 None:intergenic 25.0%
!! TTTTCTTTTTATGTATGCAG+GGG + chr3_2:5611650-5611669 Msa0392450:intron 25.0%
! AGCAAATGCATATATTATTC+AGG + chr3_2:5611775-5611794 Msa0392450:CDS 25.0%
! GCAAATGCATATATTATTCA+GGG + chr3_2:5611776-5611795 Msa0392450:CDS 25.0%
! TTAATTTACTCACAGATAGT+TGG - chr3_2:5611912-5611931 None:intergenic 25.0%
! GCTATATATGTAGATTCAAT+TGG - chr3_2:5611954-5611973 None:intergenic 25.0%
! ATTGAATCTACATATATAGC+TGG + chr3_2:5611954-5611973 Msa0392450:intron 25.0%
! AAATGGTATGAATGAGTTAA+CGG + chr3_2:5612262-5612281 Msa0392450:intron 25.0%
! TTAATACGTGCTAATTCATA+TGG - chr3_2:5612490-5612509 None:intergenic 25.0%
! TATGAATTAGCACGTATTAA+TGG + chr3_2:5612490-5612509 Msa0392450:CDS 25.0%
! CAATTAGTTCAGAATATCAA+TGG + chr3_2:5612577-5612596 Msa0392450:CDS 25.0%
! AGCATTAAATGGAAAATCAA+TGG + chr3_2:5612660-5612679 Msa0392450:CDS 25.0%
! GCATTAAATGGAAAATCAAT+GGG + chr3_2:5612661-5612680 Msa0392450:CDS 25.0%
! ATATGCCTATAATAGGTAAA+AGG - chr3_2:5612742-5612761 None:intergenic 25.0%
! CCTAAAAATATGCCTATAAT+AGG - chr3_2:5612749-5612768 None:intergenic 25.0%
!! CCTATTATAGGCATATTTTT+AGG + chr3_2:5612746-5612765 Msa0392450:intron 25.0%
! CTACTCATGTATAATATATG+TGG - chr3_2:5612840-5612859 None:intergenic 25.0%
! CAACAAAATTGTCAATCAAA+TGG - chr3_2:5612877-5612896 None:intergenic 25.0%
! AATAAGAAGTGAGAAAAACA+AGG - chr3_2:5612904-5612923 None:intergenic 25.0%
! GTCCAAAAGTTGTTAAAAAA+TGG + chr3_2:5612996-5613015 Msa0392450:intron 25.0%
! GAATGAAACTAATGCTTTAA+TGG - chr3_2:5613263-5613282 None:intergenic 25.0%
!!! GGAAAACGTATATTTTTTTC+AGG - chr3_2:5613403-5613422 None:intergenic 25.0%
!! ATACGTTTTCCTAAAATTCT+AGG + chr3_2:5613412-5613431 Msa0392450:intron 25.0%
!! CTCGACTCTTTATTTAAAAT+AGG + chr3_2:5614338-5614357 Msa0392450:intron 25.0%
! AAGAACTTCTAAACATGAAA+GGG + chr3_2:5614426-5614445 Msa0392450:intron 25.0%
! TAAGTGATTATACAAATTGG+GGG + chr3_2:5614607-5614626 Msa0392450:intron 25.0%
!!! GTTACTTCCTTTTTTTCATT+CGG - chr3_2:5614700-5614719 None:intergenic 25.0%
! ATATATATTTAAGTAGGGCT+AGG + chr3_2:5614722-5614741 Msa0392450:intron 25.0%
! TGAATCATAACTTATGATAC+AGG + chr3_2:5615090-5615109 Msa0392450:intron 25.0%
! GAATCATAACTTATGATACA+GGG + chr3_2:5615091-5615110 Msa0392450:intron 25.0%
! ATATTGATCATAAATGTCCA+TGG + chr3_2:5615393-5615412 Msa0392450:three_prime_UTR 25.0%
! ACAAACATTTTGTAGGACTT+AGG - chr3_2:5610959-5610978 None:intergenic 30.0%
!! GTTGATAATGGAAACAACAA+TGG + chr3_2:5611047-5611066 Msa0392450:CDS 30.0%
! CCGGTTTCTATTTTATGATT+AGG - chr3_2:5611262-5611281 None:intergenic 30.0%
! TATAATTGCAGCTCAACTTT+TGG + chr3_2:5611416-5611435 Msa0392450:intron 30.0%
! ATAATTGCAGCTCAACTTTT+GGG + chr3_2:5611417-5611436 Msa0392450:intron 30.0%
AGCACACATTAATTCAACAT+TGG + chr3_2:5611579-5611598 Msa0392450:intron 30.0%
! TTTCTTTTTATGTATGCAGG+GGG + chr3_2:5611651-5611670 Msa0392450:intron 30.0%
ATGCATATATTATTCAGGGT+TGG + chr3_2:5611780-5611799 Msa0392450:CDS 30.0%
TGCATATATTATTCAGGGTT+GGG + chr3_2:5611781-5611800 Msa0392450:CDS 30.0%
CTACATATATAGCTGGATAA+TGG + chr3_2:5611961-5611980 Msa0392450:intron 30.0%
TTATTGAACAGTGTATGTTG+AGG + chr3_2:5611994-5612013 Msa0392450:intron 30.0%
TATCTGGTCAGTTAATTCAT+AGG - chr3_2:5612314-5612333 None:intergenic 30.0%
TCCAGCAATTACATTCATTA+GGG + chr3_2:5612419-5612438 Msa0392450:intron 30.0%
TAAGACCTGAGTTAAAATAC+TGG - chr3_2:5612555-5612574 None:intergenic 30.0%
TTAGTTCAGAATATCAATGG+AGG + chr3_2:5612580-5612599 Msa0392450:CDS 30.0%
TAGTTCAGAATATCAATGGA+GGG + chr3_2:5612581-5612600 Msa0392450:CDS 30.0%
! CAACACCTTTTACCTATTAT+AGG + chr3_2:5612734-5612753 Msa0392450:intron 30.0%
GAAAATAAAAATGGAAGTGG+GGG - chr3_2:5612811-5612830 None:intergenic 30.0%
CGAAAATAAAAATGGAAGTG+GGG - chr3_2:5612812-5612831 None:intergenic 30.0%
GCGAAAATAAAAATGGAAGT+GGG - chr3_2:5612813-5612832 None:intergenic 30.0%
AGCGAAAATAAAAATGGAAG+TGG - chr3_2:5612814-5612833 None:intergenic 30.0%
AAAACAATGGAGAGAGAAAA+AGG + chr3_2:5612929-5612948 Msa0392450:intron 30.0%
TATATGCCAGAAAAGAATGA+GGG - chr3_2:5613190-5613209 None:intergenic 30.0%
AAAAAAAGGGGAGAAATGAA+TGG - chr3_2:5613297-5613316 None:intergenic 30.0%
!!! AACGTATATTTTTTTCAGGG+AGG - chr3_2:5613399-5613418 None:intergenic 30.0%
AATGACATCTAACCTACTTA+TGG + chr3_2:5613624-5613643 Msa0392450:intron 30.0%
CATGTTAAGCAACCAAAAAA+TGG - chr3_2:5613858-5613877 None:intergenic 30.0%
!!! CGCTATTTTGAAATCTAACA+CGG + chr3_2:5613945-5613964 Msa0392450:intron 30.0%
GACTTATGTGTATGCTATAA+GGG - chr3_2:5614134-5614153 None:intergenic 30.0%
! CTTTATTTAAAATAGGCCTC+CGG + chr3_2:5614345-5614364 Msa0392450:intron 30.0%
!!! TTGCATTTTTATTTTACCGG+AGG - chr3_2:5614364-5614383 None:intergenic 30.0%
GTTTAGAAGTTCTTCTGATT+CGG - chr3_2:5614420-5614439 None:intergenic 30.0%
GAAGAACTTCTAAACATGAA+AGG + chr3_2:5614425-5614444 Msa0392450:intron 30.0%
! ATTTACCTAATAGTGTCGTT+TGG + chr3_2:5614479-5614498 Msa0392450:intron 30.0%
CACCAAATTTATGTCCAAAA+AGG + chr3_2:5614641-5614660 Msa0392450:intron 30.0%
! CTCCTTTTTGGACATAAATT+TGG - chr3_2:5614646-5614665 None:intergenic 30.0%
! TAGACTCTAATTCTCCTTTT+TGG - chr3_2:5614658-5614677 None:intergenic 30.0%
TTAAAACCCATAGCATTTGA+AGG + chr3_2:5614767-5614786 Msa0392450:intron 30.0%
TATCTCACCACTATAGTAAT+AGG - chr3_2:5614921-5614940 None:intergenic 30.0%
! CAAAAAATGTAAGAGTGTGA+TGG + chr3_2:5614972-5614991 Msa0392450:intron 30.0%
! GTAATCATGACAAAAGTACA+TGG + chr3_2:5615030-5615049 Msa0392450:intron 30.0%
!! ATGGTTTCAAAAGCTGATTT+TGG + chr3_2:5615049-5615068 Msa0392450:intron 30.0%
!! TCTTCACATACTTGTTGTAA+TGG - chr3_2:5615180-5615199 None:intergenic 30.0%
! ATCGTGGGAAATATTTGTTT+TGG + chr3_2:5615199-5615218 Msa0392450:CDS 30.0%
!! TCGTGGGAAATATTTGTTTT+GGG + chr3_2:5615200-5615219 Msa0392450:CDS 30.0%
TCCCATTAATATCCAACAAT+TGG + chr3_2:5615296-5615315 Msa0392450:CDS 30.0%
GCCAATTGTTGGATATTAAT+GGG - chr3_2:5615300-5615319 None:intergenic 30.0%
TGCCAATTGTTGGATATTAA+TGG - chr3_2:5615301-5615320 None:intergenic 30.0%
TCATATTGTTCATTTGTGTG+TGG + chr3_2:5615346-5615365 Msa0392450:three_prime_UTR 30.0%
AAATTTCCTTTGTACACGTA+TGG + chr3_2:5615444-5615463 Msa0392450:three_prime_UTR 30.0%
AATTTCCTTTGTACACGTAT+GGG + chr3_2:5615445-5615464 Msa0392450:three_prime_UTR 30.0%
! TTTTCACATTCACGTGTATC+TGG + chr3_2:5610928-5610947 Msa0392450:CDS 35.0%
TCCTACAAAATGTTTGTCTC+AGG + chr3_2:5610962-5610981 Msa0392450:CDS 35.0%
! ACCTGAGACAAACATTTTGT+AGG - chr3_2:5610966-5610985 None:intergenic 35.0%
GTGCCATGTTTCTTCATATT+TGG + chr3_2:5611014-5611033 Msa0392450:CDS 35.0%
TCGCCAAATATGAAGAAACA+TGG - chr3_2:5611020-5611039 None:intergenic 35.0%
! CATAATTGACTCCTCTAAGA+AGG - chr3_2:5611488-5611507 None:intergenic 35.0%
CAAATGAGAAGGTTCTTTAG+AGG + chr3_2:5611724-5611743 Msa0392450:CDS 35.0%
CAGTCATGAAATAGTTGTTC+AGG - chr3_2:5611819-5611838 None:intergenic 35.0%
ATGTGACTAAGAGTCTCAAA+TGG + chr3_2:5612172-5612191 Msa0392450:intron 35.0%
TGTGACTAAGAGTCTCAAAT+GGG + chr3_2:5612173-5612192 Msa0392450:intron 35.0%
TCTCAAATGGGACAAAAAAG+TGG + chr3_2:5612185-5612204 Msa0392450:intron 35.0%
GAGTTAACGGTTGAGTTATT+TGG + chr3_2:5612275-5612294 Msa0392450:intron 35.0%
GTCCAGCAATTACATTCATT+AGG + chr3_2:5612418-5612437 Msa0392450:intron 35.0%
CCAGCAATTACATTCATTAG+GGG + chr3_2:5612420-5612439 Msa0392450:intron 35.0%
TTACAGCAGTTGGTCAAATT+GGG + chr3_2:5612458-5612477 Msa0392450:CDS 35.0%
CGTATTAATGGTAACATCAC+CGG + chr3_2:5612502-5612521 Msa0392450:CDS 35.0%
GTTAATCTTCTCATTGCATC+CGG - chr3_2:5612524-5612543 None:intergenic 35.0%
ACCTGAGTTAAAATACTGGA+TGG - chr3_2:5612551-5612570 None:intergenic 35.0%
AAAAACACAAACTTTGCTCC+CGG - chr3_2:5612613-5612632 None:intergenic 35.0%
AGTGCAGATCTAGCATTAAA+TGG + chr3_2:5612649-5612668 Msa0392450:CDS 35.0%
AAGAGTTGACAGTATTGTCT+TGG - chr3_2:5612712-5612731 None:intergenic 35.0%
!!! TAGGCATATTTTTAGGCTTG+TGG + chr3_2:5612753-5612772 Msa0392450:intron 35.0%
TGGTGCAGCGAAAATAAAAA+TGG - chr3_2:5612820-5612839 None:intergenic 35.0%
CTATATGCCAGAAAAGAATG+AGG - chr3_2:5613191-5613210 None:intergenic 35.0%
!! CTCATTCTTTTCTGGCATAT+AGG + chr3_2:5613189-5613208 Msa0392450:intron 35.0%
AAAAAATGGCAACTTCGCAT+TGG - chr3_2:5613844-5613863 None:intergenic 35.0%
!!! AATGCGAAGTTGCCATTTTT+TGG + chr3_2:5613843-5613862 Msa0392450:intron 35.0%
!! TCATGTTAACTTGTGCCTAA+TGG - chr3_2:5613883-5613902 None:intergenic 35.0%
AGTTGATCCATAGAGTCTTA+TGG - chr3_2:5614021-5614040 None:intergenic 35.0%
GAGTCTCATTTCAAATGTTG+CGG + chr3_2:5614077-5614096 Msa0392450:intron 35.0%
GGACTTATGTGTATGCTATA+AGG - chr3_2:5614135-5614154 None:intergenic 35.0%
TTCATGCATGTTTCCATACA+GGG + chr3_2:5614294-5614313 Msa0392450:intron 35.0%
AGCCTCCTATTTCATAGAAA+CGG - chr3_2:5614320-5614339 None:intergenic 35.0%
CAAATCCAAACGACACTATT+AGG - chr3_2:5614487-5614506 None:intergenic 35.0%
ACGTGTACCGAATGAAAAAA+AGG + chr3_2:5614690-5614709 Msa0392450:intron 35.0%
CAACAGCTTATATGGAAACA+GGG - chr3_2:5614832-5614851 None:intergenic 35.0%
TCAACAGCTTATATGGAAAC+AGG - chr3_2:5614833-5614852 None:intergenic 35.0%
AACGTGTTCAACAGCTTATA+TGG - chr3_2:5614840-5614859 None:intergenic 35.0%
! GTAATAGGAGCATGTTTCAT+TGG - chr3_2:5614906-5614925 None:intergenic 35.0%
ACATGCTCCTATTACTATAG+TGG + chr3_2:5614911-5614930 Msa0392450:intron 35.0%
! AAAATGTAAGAGTGTGATGG+TGG + chr3_2:5614975-5614994 Msa0392450:intron 35.0%
TTATGATACAGGGTTTGATG+TGG + chr3_2:5615101-5615120 Msa0392450:intron 35.0%
!! CACATACTTGTTGTAATGGA+AGG - chr3_2:5615176-5615195 None:intergenic 35.0%
AACAAGTATGTGAAGATCGT+GGG + chr3_2:5615184-5615203 Msa0392450:CDS 35.0%
!! TCTAAAGCATTGCCAATTGT+TGG - chr3_2:5615311-5615330 None:intergenic 35.0%
CTTCATATTTGGCGACTCAT+TGG + chr3_2:5611025-5611044 Msa0392450:CDS 40.0%
AATTAGCCCTAGCAAGTGTT+AGG - chr3_2:5611076-5611095 None:intergenic 40.0%
AGGGCTAATTATCGACCTTA+TGG + chr3_2:5611086-5611105 Msa0392450:CDS 40.0%
! ATTACCTAATGCATCGACGA+AGG - chr3_2:5611159-5611178 None:intergenic 40.0%
TTCCTCCAAATTCAAGAGCA+AGG + chr3_2:5611454-5611473 Msa0392450:CDS 40.0%
TCCTCCAAATTCAAGAGCAA+GGG + chr3_2:5611455-5611474 Msa0392450:CDS 40.0%
AAACCCCTTGCTCTTGAATT+TGG - chr3_2:5611462-5611481 None:intergenic 40.0%
AAATTCAAGAGCAAGGGGTT+TGG + chr3_2:5611461-5611480 Msa0392450:CDS 40.0%
AGAGGAGTCAATTATGCATC+TGG + chr3_2:5611492-5611511 Msa0392450:CDS 40.0%
ACTGAGCAAGTGACAAACTT+TGG + chr3_2:5611688-5611707 Msa0392450:CDS 40.0%
ACACAGTGCAACAAATGAGA+AGG + chr3_2:5611713-5611732 Msa0392450:CDS 40.0%
TAACTGACCAGATAACTCCT+CGG + chr3_2:5612320-5612339 Msa0392450:intron 40.0%
CCCCTAATGAATGTAATTGC+TGG - chr3_2:5612423-5612442 None:intergenic 40.0%
AAAGTGATCGTTACAGCAGT+TGG + chr3_2:5612448-5612467 Msa0392450:CDS 40.0%
GTTACAGCAGTTGGTCAAAT+TGG + chr3_2:5612457-5612476 Msa0392450:CDS 40.0%
!!! GCCATCCAGTATTTTAACTC+AGG + chr3_2:5612547-5612566 Msa0392450:CDS 40.0%
! GGGAGCAAAGTTTGTGTTTT+TGG + chr3_2:5612612-5612631 Msa0392450:CDS 40.0%
!!! GCATATTTTTAGGCTTGTGG+CGG + chr3_2:5612756-5612775 Msa0392450:intron 40.0%
AGAGAGAAAAAGGAAGAGAG+AGG + chr3_2:5612939-5612958 Msa0392450:intron 40.0%
AGCCAGAAAGTTTGAGTAGT+GGG - chr3_2:5613567-5613586 None:intergenic 40.0%
AGAAAGTTAACCTCAAGCAG+TGG - chr3_2:5613593-5613612 None:intergenic 40.0%
!! AATGTTAACTTGTGCCCTCA+AGG + chr3_2:5613735-5613754 Msa0392450:intron 40.0%
!! ATGTTAACTTGTGCCCTCAA+GGG + chr3_2:5613736-5613755 Msa0392450:intron 40.0%
TCTTTAACATGTGCCCTTGA+GGG - chr3_2:5613752-5613771 None:intergenic 40.0%
TTCTTTAACATGTGCCCTTG+AGG - chr3_2:5613753-5613772 None:intergenic 40.0%
! GTTGCTTAACATGTGCCATT+AGG + chr3_2:5613865-5613884 Msa0392450:intron 40.0%
GACTAGACCATAAGACTCTA+TGG + chr3_2:5614011-5614030 Msa0392450:intron 40.0%
GTTCATGCATGTTTCCATAC+AGG + chr3_2:5614293-5614312 Msa0392450:intron 40.0%
ATTTGTCACTCCTTCGTTGT+GGG + chr3_2:5614502-5614521 Msa0392450:intron 40.0%
GTGGGAAAGGAGAAAATGAA+TGG + chr3_2:5614520-5614539 Msa0392450:intron 40.0%
GTGATTATACAAATTGGGGG+TGG + chr3_2:5614610-5614629 Msa0392450:intron 40.0%
TATACAAATTGGGGGTGGTT+TGG + chr3_2:5614615-5614634 Msa0392450:intron 40.0%
CAACAAGTATGTGAAGATCG+TGG + chr3_2:5615183-5615202 Msa0392450:CDS 40.0%
AAATGTTGGCCAACTCAGTT+GGG - chr3_2:5615236-5615255 None:intergenic 40.0%
AAAATGTTGGCCAACTCAGT+TGG - chr3_2:5615237-5615256 None:intergenic 40.0%
TGCCTTGGCTAGTAAAATGT+TGG - chr3_2:5615250-5615269 None:intergenic 40.0%
TTGTGAACTGTATGATGCCT+TGG - chr3_2:5615265-5615284 None:intergenic 40.0%
CTATAAGACAACACACACCA+TGG - chr3_2:5615413-5615432 None:intergenic 40.0%
ATCAACCCATACGTGTACAA+AGG - chr3_2:5615453-5615472 None:intergenic 40.0%
! GTTTGTCTCAGGTTTTGCCA+CGG + chr3_2:5610973-5610992 Msa0392450:CDS 45.0%
!! GGCGACTCATTGGTTGATAA+TGG + chr3_2:5611035-5611054 Msa0392450:CDS 45.0%
ATGGGATCCTAACACTTGCT+AGG + chr3_2:5611066-5611085 Msa0392450:CDS 45.0%
! TGGGATCCTAACACTTGCTA+GGG + chr3_2:5611067-5611086 Msa0392450:CDS 45.0%
GAAACCGGGGAACTATAATG+CGG + chr3_2:5611274-5611293 Msa0392450:intron 45.0%
TTAGCCGCATTATAGTTCCC+CGG - chr3_2:5611281-5611300 None:intergenic 45.0%
CCTCCAAATTCAAGAGCAAG+GGG + chr3_2:5611456-5611475 Msa0392450:CDS 45.0%
! AATTATGCATCTGGAGCAGC+AGG + chr3_2:5611501-5611520 Msa0392450:CDS 45.0%
AGGGCAGATGCAAAAGCTTT+AGG - chr3_2:5611871-5611890 None:intergenic 45.0%
! TTCCGTCCCTCATTCTTTTC+TGG + chr3_2:5613181-5613200 Msa0392450:intron 45.0%
TGCCAGAAAAGAATGAGGGA+CGG - chr3_2:5613186-5613205 None:intergenic 45.0%
CCAGAAAGTTTGAGTAGTGG+GGG - chr3_2:5613565-5613584 None:intergenic 45.0%
GCCAGAAAGTTTGAGTAGTG+GGG - chr3_2:5613566-5613585 None:intergenic 45.0%
GAGCCAGAAAGTTTGAGTAG+TGG - chr3_2:5613568-5613587 None:intergenic 45.0%
AAGTTAACCTCAAGCAGTGG+CGG - chr3_2:5613590-5613609 None:intergenic 45.0%
TTCATAGAAACGGCCCTGTA+TGG - chr3_2:5614310-5614329 None:intergenic 45.0%
CAGGGCCGTTTCTATGAAAT+AGG + chr3_2:5614312-5614331 Msa0392450:intron 45.0%
GGCCGTTTCTATGAAATAGG+AGG + chr3_2:5614315-5614334 Msa0392450:intron 45.0%
GATTTGTCACTCCTTCGTTG+TGG + chr3_2:5614501-5614520 Msa0392450:intron 45.0%
TTTCTCCTTTCCCACAACGA+AGG - chr3_2:5614515-5614534 None:intergenic 45.0%
GCTGGACCTTCAAATGCTAT+GGG - chr3_2:5614776-5614795 None:intergenic 45.0%
AGCTGGACCTTCAAATGCTA+TGG - chr3_2:5614777-5614796 None:intergenic 45.0%
TAGCATTTGAAGGTCCAGCT+TGG + chr3_2:5614777-5614796 Msa0392450:intron 45.0%
AGCTTATATGGAAACAGGGC+CGG - chr3_2:5614828-5614847 None:intergenic 45.0%
ACTTTCACAAGTGCCTGTGT+CGG + chr3_2:5614863-5614882 Msa0392450:intron 45.0%
TCGAGTTTATCTACCGACAC+AGG - chr3_2:5614879-5614898 None:intergenic 45.0%
AGGGTTTGATGTGGTAGACA+AGG + chr3_2:5615110-5615129 Msa0392450:intron 45.0%
GGGTTTGATGTGGTAGACAA+GGG + chr3_2:5615111-5615130 Msa0392450:intron 45.0%
!! TGTGGTGTTGGCAGAAACAA+TGG + chr3_2:5615138-5615157 Msa0392450:CDS 45.0%
! GGCCAACATTTTACTAGCCA+AGG + chr3_2:5615245-5615264 Msa0392450:CDS 45.0%
!! TAATATATTGAAATATTAAA+TGG + chr3_2:5612245-5612264 Msa0392450:intron 5.0%
!! AAAATAAAACAAAAAAAAAA+GGG - chr3_2:5613310-5613329 None:intergenic 5.0%
!! TAAAATAAAACAAAAAAAAA+AGG - chr3_2:5613311-5613330 None:intergenic 5.0%
!!! TAAATGTTATAATTATTTTT+TGG - chr3_2:5613501-5613520 None:intergenic 5.0%
TGTGGGAAGTCGATGCCATA+AGG - chr3_2:5611104-5611123 None:intergenic 50.0%
!! TATGGCATCGACTTCCCACA+AGG + chr3_2:5611104-5611123 Msa0392450:CDS 50.0%
ATCGACGAAGGTTCGACCAT+TGG - chr3_2:5611147-5611166 None:intergenic 50.0%
CGAACCTTCGTCGATGCATT+AGG + chr3_2:5611152-5611171 Msa0392450:CDS 50.0%
CCCCTTGCTCTTGAATTTGG+AGG - chr3_2:5611459-5611478 None:intergenic 50.0%
AGGGGTTTGGACCTTCTTAG+AGG + chr3_2:5611474-5611493 Msa0392450:CDS 50.0%
AGAGGAAACAGGCAGTAACC+TGG + chr3_2:5611530-5611549 Msa0392450:CDS 50.0%
! GCGAGCGTAGTCTTGAAGAA+GGG - chr3_2:5611890-5611909 None:intergenic 50.0%
TGACCAGATAACTCCTCGGT+TGG + chr3_2:5612324-5612343 Msa0392450:intron 50.0%
TGATAAGTAACCGCCAACCG+AGG - chr3_2:5612340-5612359 None:intergenic 50.0%
TATCAATGGAGGGCAGCTTC+CGG + chr3_2:5612591-5612610 Msa0392450:CDS 50.0%
AGCTACGTTTGCAACTCTGC+AGG + chr3_2:5612779-5612798 Msa0392450:intron 50.0%
CCCCCACTACTCAAACTTTC+TGG + chr3_2:5613562-5613581 Msa0392450:intron 50.0%
TCACTCCTTCGTTGTGGGAA+AGG + chr3_2:5614507-5614526 Msa0392450:intron 50.0%
TGAGCACCTTGCATTCTCCA+AGG + chr3_2:5614801-5614820 Msa0392450:intron 50.0%
ACCTTGCATTCTCCAAGGTC+CGG + chr3_2:5614806-5614825 Msa0392450:intron 50.0%
TGCTTTCCACCCAACTGAGT+TGG + chr3_2:5615224-5615243 Msa0392450:CDS 50.0%
! GTTTTGCCACGGCAACCAGA+GGG + chr3_2:5610984-5611003 Msa0392450:CDS 55.0%
!! CATGGCACTTGTTGTCCCTC+TGG - chr3_2:5611002-5611021 None:intergenic 55.0%
TCGACCATTGGTGAAGCGAC+CGG - chr3_2:5611135-5611154 None:intergenic 55.0%
GCAGGCATCAGAGAGGAAAC+AGG + chr3_2:5611519-5611538 Msa0392450:CDS 55.0%
! GGCGAGCGTAGTCTTGAAGA+AGG - chr3_2:5611891-5611910 None:intergenic 55.0%
CCAGATAACTCCTCGGTTGG+CGG + chr3_2:5612327-5612346 Msa0392450:intron 55.0%
ATCAATGGAGGGCAGCTTCC+GGG + chr3_2:5612592-5612611 Msa0392450:CDS 55.0%
! TGCAAGGTGCTCAACCAAGC+TGG - chr3_2:5614794-5614813 None:intergenic 55.0%
GTGGTAGACAAGGGATGCTG+TGG + chr3_2:5615120-5615139 Msa0392450:CDS 55.0%
GACAAGGGATGCTGTGGTGT+TGG + chr3_2:5615126-5615145 Msa0392450:CDS 55.0%
TGTTGGCCAACTCAGTTGGG+TGG - chr3_2:5615233-5615252 None:intergenic 55.0%
! GGTTTTGCCACGGCAACCAG+AGG + chr3_2:5610983-5611002 Msa0392450:CDS 60.0%
TGTTGTCCCTCTGGTTGCCG+TGG - chr3_2:5610993-5611012 None:intergenic 60.0%
GACTTCCCACAAGGTCCCAC+CGG + chr3_2:5611113-5611132 Msa0392450:CDS 60.0%
CCATTGGTGAAGCGACCGGT+GGG - chr3_2:5611131-5611150 None:intergenic 60.0%
ACCATTGGTGAAGCGACCGG+TGG - chr3_2:5611132-5611151 None:intergenic 60.0%
TGGAGCAGCAGGCATCAGAG+AGG + chr3_2:5611512-5611531 Msa0392450:CDS 60.0%
CCGCCAACCGAGGAGTTATC+TGG - chr3_2:5612330-5612349 None:intergenic 60.0%
GCCGGACCTTGGAGAATGCA+AGG - chr3_2:5614810-5614829 None:intergenic 60.0%
ATGGAAACAGGGCCGGACCT+TGG - chr3_2:5614821-5614840 None:intergenic 60.0%
AGCGACCGGTGGGACCTTGT+GGG - chr3_2:5611121-5611140 None:intergenic 65.0%
AAGCGACCGGTGGGACCTTG+TGG - chr3_2:5611122-5611141 None:intergenic 65.0%
CCCACCGGTCGCTTCACCAA+TGG + chr3_2:5611128-5611147 Msa0392450:CDS 65.0%
! TCTGGCTCCGCCACTGCTTG+AGG + chr3_2:5613580-5613599 Msa0392450:intron 65.0%
Chromosome Type Strat End Strand Name
chr3_2 gene 5610890 5615521 5610890 ID=Msa0392450;Name=Msa0392450
chr3_2 mRNA 5610890 5615521 5610890 ID=Msa0392450-mRNA-1;Parent=Msa0392450;Name=Msa0392450-mRNA-1;_AED=0.07;_eAED=0.07;_QI=25|1|1|1|1|1|5|192|369
chr3_2 exon 5610890 5611173 5610890 ID=Msa0392450-mRNA-1:exon:1394;Parent=Msa0392450-mRNA-1
chr3_2 exon 5611427 5611551 5611427 ID=Msa0392450-mRNA-1:exon:1395;Parent=Msa0392450-mRNA-1
chr3_2 exon 5611670 5611918 5611670 ID=Msa0392450-mRNA-1:exon:1396;Parent=Msa0392450-mRNA-1
chr3_2 exon 5612424 5612682 5612424 ID=Msa0392450-mRNA-1:exon:1397;Parent=Msa0392450-mRNA-1
chr3_2 exon 5615112 5615521 5615112 ID=Msa0392450-mRNA-1:exon:1398;Parent=Msa0392450-mRNA-1
chr3_2 five_prime_UTR 5610890 5610914 5610890 ID=Msa0392450-mRNA-1:five_prime_utr;Parent=Msa0392450-mRNA-1
chr3_2 CDS 5610915 5611173 5610915 ID=Msa0392450-mRNA-1:cds;Parent=Msa0392450-mRNA-1
chr3_2 CDS 5611427 5611551 5611427 ID=Msa0392450-mRNA-1:cds;Parent=Msa0392450-mRNA-1
chr3_2 CDS 5611670 5611918 5611670 ID=Msa0392450-mRNA-1:cds;Parent=Msa0392450-mRNA-1
chr3_2 CDS 5612424 5612682 5612424 ID=Msa0392450-mRNA-1:cds;Parent=Msa0392450-mRNA-1
chr3_2 CDS 5615112 5615329 5615112 ID=Msa0392450-mRNA-1:cds;Parent=Msa0392450-mRNA-1
chr3_2 three_prime_UTR 5615330 5615521 5615330 ID=Msa0392450-mRNA-1:three_prime_utr;Parent=Msa0392450-mRNA-1
Gene Sequence

>Msa0392450

ATGAAGCATTTTATTTTCACATTCACGTGTATCTGGCTGAGCCTAAGTCCTACAAAATGTTTGTCTCAGGTTTTGCCACGGCAACCAGAGGGACAACAAGTGCCATGTTTCTTCATATTTGGCGACTCATTGGTTGATAATGGAAACAACAATGGGATCCTAACACTTGCTAGGGCTAATTATCGACCTTATGGCATCGACTTCCCACAAGGTCCCACCGGTCGCTTCACCAATGGTCGAACCTTCGTCGATGCATTAGCTCAACTTTTGGGTTTTCGAGCATATATTCCTCCAAATTCAAGAGCAAGGGGTTTGGACCTTCTTAGAGGAGTCAATTATGCATCTGGAGCAGCAGGCATCAGAGAGGAAACAGGCAGTAACCTGGGGGCTCATACATCAATGACTGAGCAAGTGACAAACTTTGGAAACACAGTGCAACAAATGAGAAGGTTCTTTAGAGGAGACAATGATGCACTTAATAGCTACCTAAGCAAATGCATATATTATTCAGGGTTGGGAAGCAATGATTACCTGAACAACTATTTCATGACTGATTTTTATTCAACTAGCACTCAGTACACACCTAAAGCTTTTGCATCTGCCCTTCTTCAAGACTACGCTCGCCAACTATCTCAATTACATTCATTAGGGGCAAGAAAAGTGATCGTTACAGCAGTTGGTCAAATTGGGTGCATACCATATGAATTAGCACGTATTAATGGTAACATCACCGGATGCAATGAGAAGATTAACAATGCCATCCAGTATTTTAACTCAGGTCTTAAGCAATTAGTTCAGAATATCAATGGAGGGCAGCTTCCGGGAGCAAAGTTTGTGTTTTTGGACTTTTATCAAAGCAGTGCAGATCTAGCATTAAATGGAAAATCAATGGGGTTTGATGTGGTAGACAAGGGATGCTGTGGTGTTGGCAGAAACAATGGACAAATCACTTGCCTTCCATTACAACAAGTATGTGAAGATCGTGGGAAATATTTGTTTTGGGATGCTTTCCACCCAACTGAGTTGGCCAACATTTTACTAGCCAAGGCATCATACAGTTCACAATCATACACTTCTCCCATTAATATCCAACAATTGGCAATGCTTTAG
Protein sequence

>Msa0392450

MKHFIFTFTCIWLSLSPTKCLSQVLPRQPEGQQVPCFFIFGDSLVDNGNNNGILTLARANYRPYGIDFPQGPTGRFTNGRTFVDALAQLLGFRAYIPPNSRARGLDLLRGVNYASGAAGIREETGSNLGAHTSMTEQVTNFGNTVQQMRRFFRGDNDALNSYLSKCIYYSGLGSNDYLNNYFMTDFYSTSTQYTPKAFASALLQDYARQLSQLHSLGARKVIVTAVGQIGCIPYELARINGNITGCNEKINNAIQYFNSGLKQLVQNINGGQLPGAKFVFLDFYQSSADLALNGKSMGFDVVDKGCCGVGRNNGQITCLPLQQVCEDRGKYLFWDAFHPTELANILLAKASYSSQSYTSPINIQQLAML*