AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0692480


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0692480 MtrunA17_Chr4g0042701 97.551 490 12 0 1 490 1 490 0.0 987
Msa0692480 MtrunA17_Chr3g0120751 26.797 459 291 20 37 473 43 478 2.06e-25 108
Msa0692480 MtrunA17_Chr7g0246961 29.412 323 150 13 55 311 8 318 2.82e-15 78.2
Msa0692480 MtrunA17_Chr1g0188461 30.052 193 121 6 60 244 11 197 5.71e-13 70.9
Msa0692480 MtrunA17_Chr6g0459101 24.171 422 261 17 61 446 73 471 2.38e-11 65.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0692480 AT1G14030.1 64.069 462 157 3 23 483 24 477 0.0 609
Msa0692480 AT3G07670.1 29.618 314 197 13 44 346 63 363 9.14e-23 101
Msa0692480 AT4G20130.1 25.814 430 234 17 80 470 99 482 3.78e-18 87.4
Msa0692480 AT3G07670.2 31.441 229 137 10 126 346 9 225 1.03e-17 85.1
Msa0692480 AT3G55080.1 25.070 355 228 12 4 349 2 327 5.91e-17 83.6
Msa0692480 AT4G20130.3 25.779 353 195 12 139 470 57 363 5.77e-15 76.6
Msa0692480 AT4G20130.2 25.779 353 195 12 139 470 57 363 5.77e-15 76.6
Msa0692480 AT5G14260.2 25.575 391 239 15 85 445 115 483 1.83e-12 69.7
Msa0692480 AT5G14260.3 25.575 391 239 15 85 445 115 483 1.83e-12 69.7
Msa0692480 AT5G14260.1 25.575 391 239 15 85 445 115 483 1.83e-12 69.7
Msa0692480 AT3G55080.3 24.615 260 172 9 97 349 1 243 3.03e-12 68.6
Msa0692480 AT3G55080.5 24.615 260 172 9 97 349 1 243 3.03e-12 68.6
Msa0692480 AT3G55080.2 26.009 223 148 8 133 349 6 217 1.01e-11 66.6
Msa0692480 AT3G55080.4 24.664 223 146 7 133 349 6 212 2.00e-11 65.9

Find 166 sgRNAs with CRISPR-Local

Find 271 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTGATCATGGTCCCCTTTAA+AGG 0.174900 4_4:+61030744 Msa0692470:three_prime_UTR
TTATACAACTATACTGAATT+TGG 0.182459 4_4:-61030523 Msa0692480:three_prime_UTR
TGACACTGGATGACTTCTTC+TGG 0.230073 4_4:-61032720 Msa0692480:CDS
GGGTACCGATGCTTTCTTAT+TGG 0.244903 4_4:-61031492 Msa0692480:CDS
TGCATTCAATCAACCTTTAA+AGG 0.269412 4_4:-61030757 Msa0692480:three_prime_UTR
AGATTGCTCTTGCATACTTA+TGG 0.269547 4_4:-61030345 Msa0692480:three_prime_UTR
ACTACTAACCTTGAAGTTCT+TGG 0.282877 4_4:+61032977 None:intergenic
GATGACTTCTTCTGGGCATT+TGG 0.290567 4_4:-61032712 Msa0692480:CDS
CTCCAGCAGTTCAAACCTTC+TGG 0.294167 4_4:-61033425 Msa0692480:CDS
CAAAATACTTCTAATCTTGC+AGG 0.301113 4_4:-61030888 Msa0692480:exon
ACCAGCAAGGGCGGATTTGC+AGG 0.304466 4_4:+61031379 Msa0692470:three_prime_UTR
TTGCTTGATATGCATCAAAA+TGG 0.313563 4_4:+61030081 Msa0692470:CDS
CATCTTTGCAAGCCTCTATA+TGG 0.317158 4_4:-61030468 Msa0692480:three_prime_UTR
GGATTTATCCACAACCTCTT+AGG 0.337946 4_4:+61033279 None:intergenic
GCAGAGTTGGCTCTGGACTA+TGG 0.343115 4_4:-61031707 Msa0692480:CDS
ATGCAAGAGCAATCTGAAAA+TGG 0.345318 4_4:+61030353 Msa0692470:three_prime_UTR
TTCCAGAAGGTTTGAACTGC+TGG 0.346946 4_4:+61033423 None:intergenic
CAGATGAAGAGTTGGTCCTT+TGG 0.353677 4_4:+61033503 None:intergenic
GCCTGCAAATCCGCCCTTGC+TGG 0.360260 4_4:-61031380 Msa0692480:CDS
TAGAAATAATCCTCCTCCTT+TGG 0.360561 4_4:-61030198 Msa0692480:three_prime_UTR
TAGCTCTCATGCAGGTATTC+CGG 0.361952 4_4:+61030015 Msa0692470:intron
AACAACAGTATGTCATTAAC+TGG 0.364991 4_4:+61030854 Msa0692470:three_prime_UTR
CACTGTTCAGAGACTCCATC+TGG 0.373117 4_4:-61031466 Msa0692480:CDS
GCATTCAATCAACCTTTAAA+GGG 0.374835 4_4:-61030756 Msa0692480:three_prime_UTR
TGCTCTTGCATACTTATGGT+TGG 0.387006 4_4:-61030341 Msa0692480:three_prime_UTR
GATCTTCGAGCAGAAAGAAT+TGG 0.388839 4_4:-61030998 Msa0692480:CDS
GCTCTTGCATACTTATGGTT+GGG 0.392646 4_4:-61030340 Msa0692480:three_prime_UTR
AAACTGATTCTACAATATAT+TGG 0.395083 4_4:-61033119 Msa0692480:intron
TCACATGCGTTCACCGTAGA+AGG 0.396385 4_4:+61030780 Msa0692470:three_prime_UTR
TTCTGTCAAGGCAGGAGAAC+AGG 0.398267 4_4:-61032099 Msa0692480:intron
GCAACCAATCCTAAACCTTC+TGG 0.402948 4_4:+61033342 None:intergenic
CCATCTTATTGGACCGGAAA+AGG 0.405140 4_4:+61030049 Msa0692470:CDS
ACAAGCTGCAGGCATGTAAT+GGG 0.405918 4_4:+61030693 Msa0692470:three_prime_UTR
CTCAAGGATCTTGGACTTTG+CGG 0.406199 4_4:-61030940 Msa0692480:CDS
GAAAGGAGGCTCAAGGATCT+TGG 0.407166 4_4:-61030949 Msa0692480:CDS
GAAGAATGAATGTCTGAAAC+TGG 0.408078 4_4:-61032788 Msa0692480:CDS
TATGCATATCGATCTGCATT+TGG 0.408825 4_4:+61031674 Msa0692470:three_prime_UTR
TTCTCCTGCCTTGACAGAAA+GGG 0.411526 4_4:+61032103 Msa0692470:three_prime_UTR
TACAAGCTGCAGGCATGTAA+TGG 0.411895 4_4:+61030692 Msa0692470:three_prime_UTR
GCTACTGATTTGACAGAGAA+AGG 0.414228 4_4:+61033474 None:intergenic
CTGAAAATGGCTCCTTCCCT+CGG 0.419876 4_4:+61030366 Msa0692470:three_prime_UTR
GACACTGGATGACTTCTTCT+GGG 0.421868 4_4:-61032719 Msa0692480:CDS
GCTGTTGCTGCTTCAGAGAT+AGG 0.422947 4_4:-61033252 Msa0692480:CDS
ACTAGCTTTCACTGGTGTCT+TGG 0.428693 4_4:+61033371 None:intergenic
AGTGCTACTAATCTCAGATA+TGG 0.428804 4_4:+61031518 Msa0692470:three_prime_UTR
TCTGAAGCAGCAACAGCATC+AGG 0.439199 4_4:+61033258 None:intergenic
TTTCTTGATAATATTCCAAC+TGG 0.444121 4_4:+61030968 Msa0692470:three_prime_UTR
TGTGATTCCACTTGCAGACT+TGG 0.445510 4_4:-61032641 Msa0692480:intron
TGTTGTTTCTTATTAGAGAA+AGG 0.454728 4_4:-61033191 Msa0692480:CDS
GGTCAAGAGAGGATTCTGTT+TGG 0.455743 4_4:-61033170 Msa0692480:CDS
AAAAGTCCATCTTATTGGAC+CGG 0.458534 4_4:+61030043 Msa0692470:CDS
ATAGTTTATTACCTGTTCAA+TGG 0.458942 4_4:+61031346 Msa0692470:intron
TGCAGGTGCCTAAGAGGTTG+TGG 0.460079 4_4:-61033287 Msa0692480:CDS
CATTTGGAATTCTCAGATCA+AGG 0.465096 4_4:-61032696 Msa0692480:CDS
GTTCTCCTGCCTTGACAGAA+AGG 0.468467 4_4:+61032102 Msa0692470:three_prime_UTR
AGATATGGAAGCATCCCTTC+TGG 0.477120 4_4:+61031533 Msa0692470:three_prime_UTR
CTCCTCATTATCACGGCTCA+TGG 0.477204 4_4:+61031427 Msa0692470:three_prime_UTR
AAGCAATGCAGAGTTGGCTC+TGG 0.478444 4_4:-61031714 Msa0692480:CDS
CTCCATCTGGGGTCATCTTG+AGG 0.481584 4_4:-61031453 Msa0692480:CDS
GAAATATATGTTCCATATAG+AGG 0.482623 4_4:+61030456 Msa0692470:three_prime_UTR
AAGAGGCAAATCTAGATTCA+AGG 0.484970 4_4:-61031080 Msa0692480:CDS
AAGAAGTCATCCAGTGTCAC+AGG 0.486528 4_4:+61032724 None:intergenic
GAAGAGCTCCAAGAACTTCA+AGG 0.489004 4_4:-61032985 Msa0692480:intron
GGTACCACACTAGCTTTCAC+TGG 0.496675 4_4:+61033363 None:intergenic
TCTGTTTGGAAGCATTACTT+TGG 0.496732 4_4:-61033156 Msa0692480:CDS
ACAACTATACTGAATTTGGT+GGG 0.497845 4_4:-61030519 Msa0692480:three_prime_UTR
GGGATTACCTATTTGCCCTA+AGG 0.498091 4_4:-61032130 Msa0692480:CDS
AAACAAAAGCAATGCAGAGT+TGG 0.498255 4_4:-61031720 Msa0692480:CDS
TTATCACACAACCATTGAAC+AGG 0.500689 4_4:-61031357 Msa0692480:intron
CAGTTCAAACCTTCTGGAAG+TGG 0.501931 4_4:-61033419 Msa0692480:CDS
ACAGGTTCACGAAAAGAGAA+TGG 0.506682 4_4:+61030140 Msa0692470:CDS
CATGCCTGCAGCTTGTAAAG+TGG 0.508006 4_4:-61030686 Msa0692480:three_prime_UTR
AGTGTGGTACCAGAAGGTTT+AGG 0.510846 4_4:-61033351 Msa0692480:CDS
TATGCATACACCTTGACACT+GGG 0.512341 4_4:-61031659 Msa0692480:CDS
TTACTTTGGTATTCTGCCAC+AGG 0.513694 4_4:-61033142 Msa0692480:CDS
TACAACTATACTGAATTTGG+TGG 0.513828 4_4:-61030520 Msa0692480:three_prime_UTR
TCATCCAGTGTCACAGGAGA+AGG 0.518798 4_4:+61032730 None:intergenic
TGGGTTGTAATAATTGTGGC+CGG 0.524912 4_4:+61030712 Msa0692470:three_prime_UTR
GCATCTACAAACTCATTCCA+TGG 0.525256 4_4:-61030111 Msa0692480:three_prime_UTR
GGAAGCATCCCTTCTGGAAG+AGG 0.525978 4_4:+61031539 Msa0692470:three_prime_UTR
GCCCATGAGCCGTGATAATG+AGG 0.527832 4_4:-61031429 Msa0692480:CDS
TGAAAATGGCTCCTTCCCTC+GGG 0.528010 4_4:+61030367 Msa0692470:three_prime_UTR
ATCTGAGATTAGTAGCACTA+GGG 0.531413 4_4:-61031514 Msa0692480:CDS
GGTTTCTTCAGATGAAGAGT+TGG 0.531719 4_4:+61033495 None:intergenic
CTGTTGCTGCTTCAGAGATA+GGG 0.532011 4_4:-61033251 Msa0692480:CDS
TCTCCTGCCTTGACAGAAAG+GGG 0.533728 4_4:+61032104 Msa0692470:three_prime_UTR
GTTTGTAGATGCTGTGCGAC+AGG 0.534296 4_4:+61030122 Msa0692470:CDS
CTTGGACTTTGCGGTGAAAG+TGG 0.534968 4_4:-61030931 Msa0692480:CDS
AGTTGGAATATTATCAAGAA+AGG 0.536592 4_4:-61030966 Msa0692480:CDS
ATCGCAAATGTAGCCTTCTA+CGG 0.536666 4_4:-61030793 Msa0692480:three_prime_UTR
AGAATTGGAACTAGACCAGT+TGG 0.537321 4_4:-61030983 Msa0692480:CDS
GTCAAATCAGTAGCTTCACT+TGG 0.539419 4_4:-61033465 Msa0692480:CDS
TCCTCATTATCACGGCTCAT+GGG 0.543503 4_4:+61031428 Msa0692470:three_prime_UTR
AACTATACTGAATTTGGTGG+GGG 0.544382 4_4:-61030517 Msa0692480:three_prime_UTR
TATGAAGTCAAAGGACCAGC+TGG 0.544591 4_4:-61032164 Msa0692480:CDS
TTCTTGTAGCCACTTCCAGA+AGG 0.547912 4_4:+61033410 None:intergenic
CTACAAACTCATTCCATGGA+AGG 0.551044 4_4:-61030107 Msa0692480:three_prime_UTR
GCAGGATCGCAAGCTGAAAG+AGG 0.551716 4_4:-61031097 Msa0692480:intron
CACCTCAAGATGACCCCAGA+TGG 0.552036 4_4:+61031451 Msa0692470:three_prime_UTR
TCCCAAGAGAAAAGACCAGC+TGG 0.553440 4_4:+61032149 Msa0692470:three_prime_UTR
GGTACCAGAAGGTTTAGGAT+TGG 0.557599 4_4:-61033346 Msa0692480:CDS
ACTGTTCAGAGACTCCATCT+GGG 0.560536 4_4:-61031465 Msa0692480:CDS
CAGGTTCACGAAAAGAGAAT+GGG 0.560835 4_4:+61030141 Msa0692470:CDS
ATCAAAATGGAACCCTTCCA+TGG 0.561331 4_4:+61030094 Msa0692470:CDS
TGGAAGTGGCTACAAGAAGA+AGG 0.567416 4_4:-61033405 Msa0692480:CDS
TATTAGAGAAAGGTCAAGAG+AGG 0.570783 4_4:-61033181 Msa0692480:CDS
CCCTCATGAGTGCCTTTGTG+AGG 0.571802 4_4:+61030227 Msa0692470:CDS
CAACTATACTGAATTTGGTG+GGG 0.573463 4_4:-61030518 Msa0692480:three_prime_UTR
ACAATGATTCGACGATAAGT+CGG 0.577569 4_4:-61030168 Msa0692480:three_prime_UTR
TATAACCGCCCTCTTCCAGA+AGG 0.578293 4_4:-61031548 Msa0692480:CDS
CTCTAAGAACTTATGCCCGA+GGG 0.578429 4_4:-61030382 Msa0692480:three_prime_UTR
ATGATCATCTGTAGTCACTC+TGG 0.581191 4_4:+61032190 Msa0692470:three_prime_UTR
GATCATGCTTATGAAGTCAA+AGG 0.581508 4_4:-61032173 Msa0692480:CDS
AGATCTCATCAATTTGCCGC+AGG 0.582417 4_4:+61031016 Msa0692470:three_prime_UTR
ATTTGGAATTCTCAGATCAA+GGG 0.583610 4_4:-61032695 Msa0692480:CDS
TATCTGAGATTAGTAGCACT+AGG 0.584493 4_4:-61031515 Msa0692480:CDS
GTTCATTCTCTATGTAATCA+CGG 0.584697 4_4:+61030591 Msa0692470:three_prime_UTR
ATATGCATACACCTTGACAC+TGG 0.586569 4_4:-61031660 Msa0692480:CDS
TGTAGACAAACCAAAGGAGG+AGG 0.587728 4_4:+61030188 Msa0692470:CDS
CTCGGATATCCCCAGTGTCA+AGG 0.587901 4_4:+61031649 Msa0692470:three_prime_UTR
TACAAACTCATTCCATGGAA+GGG 0.592326 4_4:-61030106 Msa0692480:three_prime_UTR
GTTATTCCAGTGCAGGTCAG+AGG 0.594794 4_4:-61033007 Msa0692480:intron
ACAAAGGCACTCATGAGGGT+TGG 0.596296 4_4:-61030223 Msa0692480:three_prime_UTR
CCCTCACAAAGGCACTCATG+AGG 0.597403 4_4:-61030228 Msa0692480:three_prime_UTR
TAGCAGTCGGAATAAGAGAA+GGG 0.598131 4_4:-61031050 Msa0692480:CDS
AAGAACTTATGCCCGAGGGA+AGG 0.599553 4_4:-61030378 Msa0692480:three_prime_UTR
CATTCAATCAACCTTTAAAG+GGG 0.599650 4_4:-61030755 Msa0692480:three_prime_UTR
GTAGACGTTGCTGAGACCAA+TGG 0.600772 4_4:-61031602 Msa0692480:CDS
TCAAGGCTTGCAATAGCAGT+CGG 0.600784 4_4:-61031063 Msa0692480:CDS
CACACTTTGTTCCCTCACAA+AGG 0.600880 4_4:-61030239 Msa0692480:three_prime_UTR
CCTCACAAAGGCACTCATGA+GGG 0.602588 4_4:-61030227 Msa0692480:three_prime_UTR
TGGAATATTATCAAGAAAGG+AGG 0.602703 4_4:-61030963 Msa0692480:CDS
CTCCTGCCTTGACAGAAAGG+GGG 0.606795 4_4:+61032105 Msa0692470:three_prime_UTR
GTTCTTACCAAGTCTGCAAG+TGG 0.608009 4_4:+61032634 None:intergenic
ATAGCAGTCGGAATAAGAGA+AGG 0.608578 4_4:-61031051 Msa0692480:CDS
CCTCATGAGTGCCTTTGTGA+GGG 0.609759 4_4:+61030228 Msa0692470:CDS
TTATCAAGAAAGGAGGCTCA+AGG 0.609776 4_4:-61030956 Msa0692480:CDS
AAAGCTAGTGTGGTACCAGA+AGG 0.610016 4_4:-61033357 Msa0692480:CDS
TCTCTAAGAACTTATGCCCG+AGG 0.611187 4_4:-61030383 Msa0692480:three_prime_UTR
GGGTTGTAATAATTGTGGCC+GGG 0.612240 4_4:+61030713 Msa0692470:three_prime_UTR
ACAAAGTGTGATGATTTGCT+AGG 0.614058 4_4:+61030252 Msa0692470:CDS
CATTGTAGACAAACCAAAGG+AGG 0.615228 4_4:+61030185 Msa0692470:CDS
ACTGTTGTTTGTATCTCTTG+AGG 0.620279 4_4:-61030840 Msa0692480:three_prime_UTR
GGTGAAAGTGGTGATGTCCT+TGG 0.620946 4_4:-61030919 Msa0692480:CDS
GGTTGTGTGATAACCAGCAA+GGG 0.628035 4_4:+61031367 Msa0692470:three_prime_UTR
TGGTTGTGTGATAACCAGCA+AGG 0.629031 4_4:+61031366 Msa0692470:three_prime_UTR
AGCAGTCGGAATAAGAGAAG+GGG 0.636940 4_4:-61031049 Msa0692480:CDS
AATCATTGTAGACAAACCAA+AGG 0.637419 4_4:+61030182 Msa0692470:CDS
GAAGCATCCCTTCTGGAAGA+GGG 0.639736 4_4:+61031540 Msa0692470:three_prime_UTR
ATACTAGCTCCTCATTATCA+CGG 0.640006 4_4:+61031420 Msa0692470:three_prime_UTR
CTGTAGTCACTCTGGCACTG+TGG 0.648083 4_4:+61032198 Msa0692470:three_prime_UTR
TGCTGCTTCAGAGATAGGGA+AGG 0.648122 4_4:-61033247 Msa0692480:CDS
ATTGTAGAATCAGTTTCCTG+TGG 0.648786 4_4:+61033126 None:intergenic
GTAATGGGTTGTAATAATTG+TGG 0.651529 4_4:+61030708 Msa0692470:three_prime_UTR
ATAACCGCCCTCTTCCAGAA+GGG 0.651691 4_4:-61031547 Msa0692480:CDS
TGATTCCAATAAGAAAGCAT+CGG 0.654051 4_4:+61031487 Msa0692470:three_prime_UTR
GACACCAGTGAAAGCTAGTG+TGG 0.671601 4_4:-61033367 Msa0692480:CDS
TCTGAGATTAGTAGCACTAG+GGG 0.673869 4_4:-61031513 Msa0692480:CDS
CTGTTCAGAGACTCCATCTG+GGG 0.675062 4_4:-61031464 Msa0692480:CDS
TGTGTGATAACCAGCAAGGG+CGG 0.678647 4_4:+61031370 Msa0692470:three_prime_UTR
ATGCATACACCTTGACACTG+GGG 0.698561 4_4:-61031658 Msa0692480:CDS
GCATCCCTTCTGGAAGAGGG+CGG 0.703925 4_4:+61031543 Msa0692470:three_prime_UTR
AACAACATAACAGACAACCA+TGG 0.720499 4_4:+61033207 None:intergenic
CTGAGATTAGTAGCACTAGG+GGG 0.740933 4_4:-61031512 Msa0692480:CDS
TGTGTAGTAAGTTGACACCA+TGG 0.752669 4_4:-61033224 Msa0692480:CDS
TGAGGAGCTAGTATGCAAAG+CGG 0.776917 4_4:-61031411 Msa0692480:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAATCAATATTTGAAAACAT+GGG + chr4_4:61030753-61030772 Msa0692470:three_prime_UTR 15.0%
!! ATAATCAATATTTGAAAACA+TGG + chr4_4:61030754-61030773 Msa0692470:three_prime_UTR 15.0%
!!! AAACTGATTCTACAATATAT+TGG - chr4_4:61030563-61030582 Msa0692480:three_prime_UTR 20.0%
!!! TCATTTTCATTTTTTGTTGA+AGG + chr4_4:61031432-61031451 Msa0692470:three_prime_UTR 20.0%
!! ACATTTCCAAATTCAATTTA+TGG - chr4_4:61031451-61031470 Msa0692480:CDS 20.0%
!!! TGCTTTTGTTTAAATCATAT+TGG + chr4_4:61031953-61031972 Msa0692470:intron 20.0%
!! TGTAATGAAATATATAGACA+CGG + chr4_4:61032431-61032450 None:intergenic 20.0%
!! TTATACAACTATACTGAATT+TGG - chr4_4:61033159-61033178 Msa0692480:CDS 20.0%
!!! TTTTGTATACATGATTTTGT+AGG + chr4_4:61033278-61033297 None:intergenic 20.0%
!!! TTTTAAAAAGTCCATCTTAT+TGG + chr4_4:61033647-61033666 None:intergenic 20.0%
!!! AAAGATTGTAGCCATTTTTT+TGG + chr4_4:61030098-61030117 Msa0692470:CDS 25.0%
!!! TAGAAATGATGTTATTTTGC+AGG - chr4_4:61030378-61030397 Msa0692480:three_prime_UTR 25.0%
!!! TGTTGTTTCTTATTAGAGAA+AGG - chr4_4:61030491-61030510 Msa0692480:three_prime_UTR 25.0%
! TGATTCTACAATATATTGGT+GGG - chr4_4:61030567-61030586 Msa0692480:three_prime_UTR 25.0%
!! GAAATTGAGTTCTTTTCATA+TGG - chr4_4:61030629-61030648 Msa0692480:three_prime_UTR 25.0%
! AAGGAAAAAGCTTCTTATTA+GGG + chr4_4:61030936-61030955 Msa0692470:three_prime_UTR 25.0%
!! TCAACATCTATTAGTTTACA+AGG - chr4_4:61031285-61031304 Msa0692480:intron 25.0%
! AAAACAAGTAAGACTCAATT+TGG + chr4_4:61031379-61031398 Msa0692470:three_prime_UTR 25.0%
!! TTTTGTTGAAGGATATTGAT+GGG + chr4_4:61031421-61031440 Msa0692470:three_prime_UTR 25.0%
!! TTTTTGTTGAAGGATATTGA+TGG + chr4_4:61031422-61031441 Msa0692470:three_prime_UTR 25.0%
! TCTGATCCATAAATTGAATT+TGG + chr4_4:61031460-61031479 Msa0692470:three_prime_UTR 25.0%
! ATGAAAAGAAACATATGAAG+AGG + chr4_4:61031622-61031641 Msa0692470:three_prime_UTR 25.0%
! ATAGTTTATTACCTGTTCAA+TGG + chr4_4:61032339-61032358 None:intergenic 25.0%
! AGGTAATAAACTATACATTC+AGG - chr4_4:61032345-61032364 Msa0692480:intron 25.0%
! GGTAATAAACTATACATTCA+GGG - chr4_4:61032346-61032365 Msa0692480:intron 25.0%
!! TTTCTTGATAATATTCCAAC+TGG + chr4_4:61032717-61032736 None:intergenic 25.0%
! AGTTGGAATATTATCAAGAA+AGG - chr4_4:61032716-61032735 Msa0692480:CDS 25.0%
!!! AAGATTAGAAGTATTTTGCA+AGG + chr4_4:61032792-61032811 None:intergenic 25.0%
! GAAATATATGTTCCATATAG+AGG + chr4_4:61033229-61033248 None:intergenic 25.0%
!!! TAAGATGGACTTTTTAAAAC+CGG - chr4_4:61033648-61033667 Msa0692480:five_prime_UTR 25.0%
CAAAACCAGAACCAAAAAAA+TGG - chr4_4:61030084-61030103 Msa0692480:three_prime_UTR 30.0%
! AAAATGGCTACAATCTTTTC+TGG - chr4_4:61030100-61030119 Msa0692480:three_prime_UTR 30.0%
! TTCTCTTTTCACACAAACAA+GGG - chr4_4:61030139-61030158 Msa0692480:three_prime_UTR 30.0%
! AAATCATCTTTTGCAACCAA+AGG - chr4_4:61030163-61030182 Msa0692480:three_prime_UTR 30.0%
CTGATTCTACAATATATTGG+TGG - chr4_4:61030566-61030585 Msa0692480:three_prime_UTR 30.0%
! TTGAGTTCTTTTCATATGGT+TGG - chr4_4:61030633-61030652 Msa0692480:three_prime_UTR 30.0%
ATTCAGTTCATTCAAAGTTC+AGG + chr4_4:61030824-61030843 Msa0692470:three_prime_UTR 30.0%
TTGAATGAACTGAATTGAGT+AGG - chr4_4:61030829-61030848 Msa0692480:three_prime_UTR 30.0%
GAAGGAAAAAGCTTCTTATT+AGG + chr4_4:61030937-61030956 Msa0692470:three_prime_UTR 30.0%
! ATTTGGAATTCTCAGATCAA+GGG - chr4_4:61030987-61031006 Msa0692480:CDS 30.0%
ACAGAAGAAGAGAAATGAAA+AGG + chr4_4:61031073-61031092 Msa0692470:three_prime_UTR 30.0%
CTTAAGAACATTAACTGATC+TGG + chr4_4:61031176-61031195 Msa0692470:intron 30.0%
GAGAGTTTCTCAATTAAAAC+CGG + chr4_4:61031339-61031358 Msa0692470:intron 30.0%
TTAATTGAGAAACTCTCCAA+AGG - chr4_4:61031342-61031361 Msa0692480:intron 30.0%
!! TTTGGATTAGTTTCTACCTT+TGG + chr4_4:61031361-61031380 Msa0692470:three_prime_UTR 30.0%
! ATGCTTCTTTTTCCTTGATA+TGG + chr4_4:61031762-61031781 Msa0692470:three_prime_UTR 30.0%
! TTTTCATGCTTCTCAATTCT+TGG - chr4_4:61031880-61031899 Msa0692480:intron 30.0%
CTACTTTGTCGTCAAAAAAA+GGG + chr4_4:61032064-61032083 Msa0692470:intron 30.0%
TCTACTTTGTCGTCAAAAAA+AGG + chr4_4:61032065-61032084 Msa0692470:intron 30.0%
! TGATTCCAATAAGAAAGCAT+CGG + chr4_4:61032198-61032217 Msa0692470:three_prime_UTR 30.0%
TATTCTCATTACCATCATGT+TGG + chr4_4:61032374-61032393 None:intergenic 30.0%
! ATTGCATTTTACGTAGTACA+TGG - chr4_4:61032496-61032515 Msa0692480:intron 30.0%
! TTGCATTTTACGTAGTACAT+GGG - chr4_4:61032497-61032516 Msa0692480:intron 30.0%
TGGAATATTATCAAGAAAGG+AGG - chr4_4:61032719-61032738 Msa0692480:CDS 30.0%
CAAAATACTTCTAATCTTGC+AGG - chr4_4:61032794-61032813 Msa0692480:CDS 30.0%
AACAACAGTATGTCATTAAC+TGG + chr4_4:61032831-61032850 None:intergenic 30.0%
TGCATTCAATCAACCTTTAA+AGG - chr4_4:61032925-61032944 Msa0692480:intron 30.0%
GCATTCAATCAACCTTTAAA+GGG - chr4_4:61032926-61032945 Msa0692480:intron 30.0%
! CATTCAATCAACCTTTAAAG+GGG - chr4_4:61032927-61032946 Msa0692480:intron 30.0%
!! GTAATGGGTTGTAATAATTG+TGG + chr4_4:61032977-61032996 None:intergenic 30.0%
GTTCATTCTCTATGTAATCA+CGG + chr4_4:61033094-61033113 None:intergenic 30.0%
TACAACTATACTGAATTTGG+TGG - chr4_4:61033162-61033181 Msa0692480:CDS 30.0%
ACAACTATACTGAATTTGGT+GGG - chr4_4:61033163-61033182 Msa0692480:CDS 30.0%
CATGGGGAAAAAAGAAAAAT+AGG + chr4_4:61033251-61033270 None:intergenic 30.0%
!! CTATTTTTCTTTTTTCCCCA+TGG - chr4_4:61033249-61033268 Msa0692480:CDS 30.0%
! ATGATTTTGTAGGAAACCAT+GGG + chr4_4:61033268-61033287 None:intergenic 30.0%
AATCATTGTAGACAAACCAA+AGG + chr4_4:61033503-61033522 None:intergenic 30.0%
TTGCTTGATATGCATCAAAA+TGG + chr4_4:61033604-61033623 None:intergenic 30.0%
!!! TGTAGCCATTTTTTTGGTTC+TGG + chr4_4:61030092-61030111 Msa0692470:CDS 35.0%
! CTTCTCTTTTCACACAAACA+AGG - chr4_4:61030138-61030157 Msa0692480:three_prime_UTR 35.0%
AACAACATAACAGACAACCA+TGG + chr4_4:61030478-61030497 Msa0692470:three_prime_UTR 35.0%
TATTAGAGAAAGGTCAAGAG+AGG - chr4_4:61030501-61030520 Msa0692480:three_prime_UTR 35.0%
!! TCTGTTTGGAAGCATTACTT+TGG - chr4_4:61030526-61030545 Msa0692480:three_prime_UTR 35.0%
ATTGTAGAATCAGTTTCCTG+TGG + chr4_4:61030559-61030578 Msa0692470:three_prime_UTR 35.0%
!!! ATTGGTGGGTTTCTTTTGTT+TGG - chr4_4:61030581-61030600 Msa0692480:three_prime_UTR 35.0%
! ATATGGTTGGTTGATTCAGT+TGG - chr4_4:61030646-61030665 Msa0692480:three_prime_UTR 35.0%
!! TGGTTGATTCAGTTGGTAAT+TGG - chr4_4:61030653-61030672 Msa0692480:three_prime_UTR 35.0%
ACTACTAACCTTGAAGTTCT+TGG + chr4_4:61030708-61030727 Msa0692470:three_prime_UTR 35.0%
TTCATTCAAAGTTCAGGATG+TGG + chr4_4:61030818-61030837 Msa0692470:three_prime_UTR 35.0%
! GAAGAATGAATGTCTGAAAC+TGG - chr4_4:61030894-61030913 Msa0692480:exon 35.0%
! CATTTGGAATTCTCAGATCA+AGG - chr4_4:61030986-61031005 Msa0692480:CDS 35.0%
! CAACTAGATTTTCATTGCGA+AGG + chr4_4:61031023-61031042 Msa0692470:three_prime_UTR 35.0%
! TCTAAAATTATGTCCACGCT+AGG + chr4_4:61031152-61031171 Msa0692470:intron 35.0%
! AGGACTTCTTTTGTATGTGA+AGG - chr4_4:61031305-61031324 Msa0692480:intron 35.0%
! GGACTTCTTTTGTATGTGAA+GGG - chr4_4:61031306-61031325 Msa0692480:intron 35.0%
GATCATGCTTATGAAGTCAA+AGG - chr4_4:61031509-61031528 Msa0692480:CDS 35.0%
!!! CAGTTGGTAACTTTTACTGT+AGG - chr4_4:61031920-61031939 Msa0692480:intron 35.0%
AAACAAAAGCAATGCAGAGT+TGG - chr4_4:61031962-61031981 Msa0692480:intron 35.0%
TATGCATATCGATCTGCATT+TGG + chr4_4:61032011-61032030 Msa0692470:intron 35.0%
! AGTGCTACTAATCTCAGATA+TGG + chr4_4:61032167-61032186 Msa0692470:three_prime_UTR 35.0%
! TATCTGAGATTAGTAGCACT+AGG - chr4_4:61032167-61032186 Msa0692480:CDS 35.0%
! ATCTGAGATTAGTAGCACTA+GGG - chr4_4:61032168-61032187 Msa0692480:CDS 35.0%
ATACTAGCTCCTCATTATCA+CGG + chr4_4:61032265-61032284 None:intergenic 35.0%
TTATCACACAACCATTGAAC+AGG - chr4_4:61032325-61032344 Msa0692480:intron 35.0%
GTACTACGTAAAATGCAATG+AGG + chr4_4:61032495-61032514 None:intergenic 35.0%
GAACAAAGCATACAAATTGC+AGG - chr4_4:61032567-61032586 Msa0692480:intron 35.0%
AAGAGGCAAATCTAGATTCA+AGG - chr4_4:61032602-61032621 Msa0692480:intron 35.0%
! ACTGTTGTTTGTATCTCTTG+AGG - chr4_4:61032842-61032861 Msa0692480:intron 35.0%
GGATGAAAAAACTGAACACT+TGG - chr4_4:61032863-61032882 Msa0692480:intron 35.0%
! CAACTATACTGAATTTGGTG+GGG - chr4_4:61033164-61033183 Msa0692480:CDS 35.0%
! AACTATACTGAATTTGGTGG+GGG - chr4_4:61033165-61033184 Msa0692480:CDS 35.0%
! ATTTGGTGGGGGAAAAAATA+AGG - chr4_4:61033176-61033195 Msa0692480:CDS 35.0%
TTTGGTGGGGGAAAAAATAA+GGG - chr4_4:61033177-61033196 Msa0692480:CDS 35.0%
! TGATTTTGTAGGAAACCATG+GGG + chr4_4:61033267-61033286 None:intergenic 35.0%
! CATGATTTTGTAGGAAACCA+TGG + chr4_4:61033269-61033288 None:intergenic 35.0%
ATGCAAGAGCAATCTGAAAA+TGG + chr4_4:61033332-61033351 None:intergenic 35.0%
AGATTGCTCTTGCATACTTA+TGG - chr4_4:61033337-61033356 Msa0692480:CDS 35.0%
! CTTACTTGAGTAGAGTTTTG+AGG - chr4_4:61033406-61033425 Msa0692480:CDS 35.0%
!! ACAAAGTGTGATGATTTGCT+AGG + chr4_4:61033433-61033452 None:intergenic 35.0%
TAGAAATAATCCTCCTCCTT+TGG - chr4_4:61033484-61033503 Msa0692480:CDS 35.0%
ACAATGATTCGACGATAAGT+CGG - chr4_4:61033514-61033533 Msa0692480:CDS 35.0%
TACAAACTCATTCCATGGAA+GGG - chr4_4:61033576-61033595 Msa0692480:CDS 35.0%
AAAAGTCCATCTTATTGGAC+CGG + chr4_4:61033642-61033661 None:intergenic 35.0%
! ATGGCTACAATCTTTTCTGG+AGG - chr4_4:61030103-61030122 Msa0692480:three_prime_UTR 40.0%
GGTTTCTTCAGATGAAGAGT+TGG + chr4_4:61030190-61030209 Msa0692470:CDS 40.0%
!! GCTACTGATTTGACAGAGAA+AGG + chr4_4:61030211-61030230 Msa0692470:CDS 40.0%
GTCAAATCAGTAGCTTCACT+TGG - chr4_4:61030217-61030236 Msa0692480:three_prime_UTR 40.0%
!! TTATTTTGCAGGTGCCTAAG+AGG - chr4_4:61030389-61030408 Msa0692480:three_prime_UTR 40.0%
GGATTTATCCACAACCTCTT+AGG + chr4_4:61030406-61030425 Msa0692470:three_prime_UTR 40.0%
! TGTGTAGTAAGTTGACACCA+TGG - chr4_4:61030458-61030477 Msa0692480:three_prime_UTR 40.0%
TTACTTTGGTATTCTGCCAC+AGG - chr4_4:61030540-61030559 Msa0692480:three_prime_UTR 40.0%
GTAATTGGTTATTCCAGTGC+AGG - chr4_4:61030668-61030687 Msa0692480:three_prime_UTR 40.0%
TGTCTATGATATTCCTAGCG+TGG - chr4_4:61031136-61031155 Msa0692480:intron 40.0%
ATGATCATCTGTAGTCACTC+TGG + chr4_4:61031495-61031514 Msa0692470:three_prime_UTR 40.0%
TTTCCTTGATATGGAAGAGC+TGG + chr4_4:61031753-61031772 Msa0692470:three_prime_UTR 40.0%
!! CTTTCTGGCTCTGATACATT+TGG + chr4_4:61031796-61031815 Msa0692470:three_prime_UTR 40.0%
AAAGTTCTGCTGCAACTTTC+TGG + chr4_4:61031811-61031830 Msa0692470:three_prime_UTR 40.0%
! GCAATCCAAGCTGTATTTTG+AGG - chr4_4:61031831-61031850 Msa0692480:intron 40.0%
CACATTCATAACTGTGCAGT+TGG - chr4_4:61031904-61031923 Msa0692480:intron 40.0%
ATATGCATACACCTTGACAC+TGG - chr4_4:61032022-61032041 Msa0692480:intron 40.0%
TATGCATACACCTTGACACT+GGG - chr4_4:61032023-61032042 Msa0692480:intron 40.0%
GTCAAAAAAAGGGTCTGACT+CGG + chr4_4:61032054-61032073 Msa0692470:intron 40.0%
TGCTGTCTGAGAAAAACCAT+TGG + chr4_4:61032099-61032118 Msa0692470:intron 40.0%
! TCTGAGATTAGTAGCACTAG+GGG - chr4_4:61032169-61032188 Msa0692480:CDS 40.0%
ATAGCAGTCGGAATAAGAGA+AGG - chr4_4:61032631-61032650 Msa0692480:intron 40.0%
TAGCAGTCGGAATAAGAGAA+GGG - chr4_4:61032632-61032651 Msa0692480:intron 40.0%
AAGGGGAAAAAATGATCCTG+CGG - chr4_4:61032650-61032669 Msa0692480:CDS 40.0%
GATCTTCGAGCAGAAAGAAT+TGG - chr4_4:61032684-61032703 Msa0692480:CDS 40.0%
AGAATTGGAACTAGACCAGT+TGG - chr4_4:61032699-61032718 Msa0692480:CDS 40.0%
TTATCAAGAAAGGAGGCTCA+AGG - chr4_4:61032726-61032745 Msa0692480:CDS 40.0%
! AGTATTTTGCAAGGTCTCCA+AGG + chr4_4:61032783-61032802 None:intergenic 40.0%
ATCGCAAATGTAGCCTTCTA+CGG - chr4_4:61032889-61032908 Msa0692480:intron 40.0%
TTGATCATGGTCCCCTTTAA+AGG + chr4_4:61032941-61032960 None:intergenic 40.0%
! CCATGATCAAGTTTTTGACC+CGG - chr4_4:61032951-61032970 Msa0692480:intron 40.0%
TGGGTTGTAATAATTGTGGC+CGG + chr4_4:61032973-61032992 None:intergenic 40.0%
! TTTTCCACTTTACAAGCTGC+AGG + chr4_4:61033003-61033022 None:intergenic 40.0%
CATCTTTGCAAGCCTCTATA+TGG - chr4_4:61033214-61033233 Msa0692480:CDS 40.0%
TGCTCTTGCATACTTATGGT+TGG - chr4_4:61033341-61033360 Msa0692480:CDS 40.0%
GCTCTTGCATACTTATGGTT+GGG - chr4_4:61033342-61033361 Msa0692480:CDS 40.0%
CATTGTAGACAAACCAAAGG+AGG + chr4_4:61033500-61033519 None:intergenic 40.0%
CAGGTTCACGAAAAGAGAAT+GGG + chr4_4:61033544-61033563 None:intergenic 40.0%
ACAGGTTCACGAAAAGAGAA+TGG + chr4_4:61033545-61033564 None:intergenic 40.0%
GCATCTACAAACTCATTCCA+TGG - chr4_4:61033571-61033590 Msa0692480:CDS 40.0%
CTACAAACTCATTCCATGGA+AGG - chr4_4:61033575-61033594 Msa0692480:CDS 40.0%
ATCAAAATGGAACCCTTCCA+TGG + chr4_4:61033591-61033610 None:intergenic 40.0%
! GCAATTGTACAAGCCTTTTC+CGG - chr4_4:61033620-61033639 Msa0692480:five_prime_UTR 40.0%
! CAGATGAAGAGTTGGTCCTT+TGG + chr4_4:61030182-61030201 Msa0692470:CDS 45.0%
TTCCAGAAGGTTTGAACTGC+TGG + chr4_4:61030262-61030281 Msa0692470:CDS 45.0%
! CAGTTCAAACCTTCTGGAAG+TGG - chr4_4:61030263-61030282 Msa0692480:three_prime_UTR 45.0%
TTCTTGTAGCCACTTCCAGA+AGG + chr4_4:61030275-61030294 Msa0692470:CDS 45.0%
TGGAAGTGGCTACAAGAAGA+AGG - chr4_4:61030277-61030296 Msa0692480:three_prime_UTR 45.0%
!! ACTAGCTTTCACTGGTGTCT+TGG + chr4_4:61030314-61030333 Msa0692470:three_prime_UTR 45.0%
AAAGCTAGTGTGGTACCAGA+AGG - chr4_4:61030325-61030344 Msa0692480:three_prime_UTR 45.0%
AGTGTGGTACCAGAAGGTTT+AGG - chr4_4:61030331-61030350 Msa0692480:three_prime_UTR 45.0%
! GGTACCAGAAGGTTTAGGAT+TGG - chr4_4:61030336-61030355 Msa0692480:three_prime_UTR 45.0%
GCAACCAATCCTAAACCTTC+TGG + chr4_4:61030343-61030362 Msa0692470:three_prime_UTR 45.0%
! CTGTTGCTGCTTCAGAGATA+GGG - chr4_4:61030431-61030450 Msa0692480:three_prime_UTR 45.0%
GGTCAAGAGAGGATTCTGTT+TGG - chr4_4:61030512-61030531 Msa0692480:three_prime_UTR 45.0%
GAAGAGCTCCAAGAACTTCA+AGG - chr4_4:61030697-61030716 Msa0692480:three_prime_UTR 45.0%
! TTTTCCTTCTCCTGTGACAC+TGG - chr4_4:61030948-61030967 Msa0692480:CDS 45.0%
AAGAAGTCATCCAGTGTCAC+AGG + chr4_4:61030961-61030980 Msa0692470:three_prime_UTR 45.0%
TGACACTGGATGACTTCTTC+TGG - chr4_4:61030962-61030981 Msa0692480:CDS 45.0%
GACACTGGATGACTTCTTCT+GGG - chr4_4:61030963-61030982 Msa0692480:CDS 45.0%
GATGACTTCTTCTGGGCATT+TGG - chr4_4:61030970-61030989 Msa0692480:CDS 45.0%
TGTGATTCCACTTGCAGACT+TGG - chr4_4:61031041-61031060 Msa0692480:CDS 45.0%
GTTCTTACCAAGTCTGCAAG+TGG + chr4_4:61031051-61031070 Msa0692470:three_prime_UTR 45.0%
TCTGTATCATGCAGCTGTAG+AGG - chr4_4:61031088-61031107 Msa0692480:CDS 45.0%
GTATGTGAAGGGTCGTAAAC+CGG - chr4_4:61031317-61031336 Msa0692480:intron 45.0%
TATGAAGTCAAAGGACCAGC+TGG - chr4_4:61031518-61031537 Msa0692480:CDS 45.0%
!!! ACCAGCTGGTCTTTTCTCTT+GGG - chr4_4:61031532-61031551 Msa0692480:CDS 45.0%
GGGATTACCTATTTGCCCTA+AGG - chr4_4:61031552-61031571 Msa0692480:CDS 45.0%
TTCTCCTGCCTTGACAGAAA+GGG + chr4_4:61031582-61031601 Msa0692470:three_prime_UTR 45.0%
AATACATCCATGTCCATCCG+AGG - chr4_4:61031674-61031693 Msa0692480:CDS 45.0%
ATACATCCATGTCCATCCGA+GGG - chr4_4:61031675-61031694 Msa0692480:CDS 45.0%
TAGCCAGCTCTTCCATATCA+AGG - chr4_4:61031747-61031766 Msa0692480:intron 45.0%
TTGCGCCTCAAAATACAGCT+TGG + chr4_4:61031839-61031858 Msa0692470:three_prime_UTR 45.0%
ATGCATACACCTTGACACTG+GGG - chr4_4:61032024-61032043 Msa0692480:intron 45.0%
!! AGATATGGAAGCATCCCTTC+TGG + chr4_4:61032152-61032171 Msa0692470:three_prime_UTR 45.0%
CTGAGATTAGTAGCACTAGG+GGG - chr4_4:61032170-61032189 Msa0692480:CDS 45.0%
!! GGGTACCGATGCTTTCTTAT+TGG - chr4_4:61032190-61032209 Msa0692480:CDS 45.0%
ACTGTTCAGAGACTCCATCT+GGG - chr4_4:61032217-61032236 Msa0692480:intron 45.0%
TCCTCATTATCACGGCTCAT+GGG + chr4_4:61032257-61032276 None:intergenic 45.0%
TGAGGAGCTAGTATGCAAAG+CGG - chr4_4:61032271-61032290 Msa0692480:intron 45.0%
GGTTGTGTGATAACCAGCAA+GGG + chr4_4:61032318-61032337 None:intergenic 45.0%
TGGTTGTGTGATAACCAGCA+AGG + chr4_4:61032319-61032338 None:intergenic 45.0%
CATTCAGGGTTCCAACATGA+TGG - chr4_4:61032360-61032379 Msa0692480:intron 45.0%
TCAAGGCTTGCAATAGCAGT+CGG - chr4_4:61032619-61032638 Msa0692480:intron 45.0%
AGCAGTCGGAATAAGAGAAG+GGG - chr4_4:61032633-61032652 Msa0692480:intron 45.0%
AGATCTCATCAATTTGCCGC+AGG + chr4_4:61032669-61032688 None:intergenic 45.0%
CTCAAGGATCTTGGACTTTG+CGG - chr4_4:61032742-61032761 Msa0692480:CDS 45.0%
CCGGGTCAAAAACTTGATCA+TGG + chr4_4:61032954-61032973 None:intergenic 45.0%
GGGTTGTAATAATTGTGGCC+GGG + chr4_4:61032972-61032991 None:intergenic 45.0%
ACAAGCTGCAGGCATGTAAT+GGG + chr4_4:61032992-61033011 None:intergenic 45.0%
TACAAGCTGCAGGCATGTAA+TGG + chr4_4:61032993-61033012 None:intergenic 45.0%
! TCTCTAAGAACTTATGCCCG+AGG - chr4_4:61033299-61033318 Msa0692480:CDS 45.0%
! CTCTAAGAACTTATGCCCGA+GGG - chr4_4:61033300-61033319 Msa0692480:CDS 45.0%
CACACTTTGTTCCCTCACAA+AGG - chr4_4:61033443-61033462 Msa0692480:CDS 45.0%
TGTAGACAAACCAAAGGAGG+AGG + chr4_4:61033497-61033516 None:intergenic 45.0%
CCATCTTATTGGACCGGAAA+AGG + chr4_4:61033636-61033655 None:intergenic 45.0%
! CCTTTTCCGGTCCAATAAGA+TGG - chr4_4:61033633-61033652 Msa0692480:five_prime_UTR 45.0%
CTCCAGCAGTTCAAACCTTC+TGG - chr4_4:61030257-61030276 Msa0692480:three_prime_UTR 50.0%
GACACCAGTGAAAGCTAGTG+TGG - chr4_4:61030315-61030334 Msa0692480:three_prime_UTR 50.0%
!! GGTACCACACTAGCTTTCAC+TGG + chr4_4:61030322-61030341 Msa0692470:three_prime_UTR 50.0%
! TCTGAAGCAGCAACAGCATC+AGG + chr4_4:61030427-61030446 Msa0692470:three_prime_UTR 50.0%
! GCTGTTGCTGCTTCAGAGAT+AGG - chr4_4:61030430-61030449 Msa0692480:three_prime_UTR 50.0%
! TGCTGCTTCAGAGATAGGGA+AGG - chr4_4:61030435-61030454 Msa0692480:three_prime_UTR 50.0%
GTTATTCCAGTGCAGGTCAG+AGG - chr4_4:61030675-61030694 Msa0692480:three_prime_UTR 50.0%
TCATCCAGTGTCACAGGAGA+AGG + chr4_4:61030955-61030974 Msa0692470:three_prime_UTR 50.0%
!!! GACCAGCTGGTCTTTTCTCT+TGG - chr4_4:61031531-61031550 Msa0692480:CDS 50.0%
TCCCAAGAGAAAAGACCAGC+TGG + chr4_4:61031536-61031555 Msa0692470:three_prime_UTR 50.0%
TCTCCTGCCTTGACAGAAAG+GGG + chr4_4:61031581-61031600 Msa0692470:three_prime_UTR 50.0%
GTTCTCCTGCCTTGACAGAA+AGG + chr4_4:61031583-61031602 Msa0692470:three_prime_UTR 50.0%
TTCTGTCAAGGCAGGAGAAC+AGG - chr4_4:61031583-61031602 Msa0692480:CDS 50.0%
TACATCCATGTCCATCCGAG+GGG - chr4_4:61031676-61031695 Msa0692480:CDS 50.0%
! AAGCAATGCAGAGTTGGCTC+TGG - chr4_4:61031968-61031987 Msa0692480:intron 50.0%
GTAGACGTTGCTGAGACCAA+TGG - chr4_4:61032080-61032099 Msa0692480:intron 50.0%
TATAACCGCCCTCTTCCAGA+AGG - chr4_4:61032134-61032153 Msa0692480:CDS 50.0%
ATAACCGCCCTCTTCCAGAA+GGG - chr4_4:61032135-61032154 Msa0692480:CDS 50.0%
! GAAGCATCCCTTCTGGAAGA+GGG + chr4_4:61032145-61032164 Msa0692470:three_prime_UTR 50.0%
CACTGTTCAGAGACTCCATC+TGG - chr4_4:61032216-61032235 Msa0692480:intron 50.0%
CTGTTCAGAGACTCCATCTG+GGG - chr4_4:61032218-61032237 Msa0692480:intron 50.0%
CTCCTCATTATCACGGCTCA+TGG + chr4_4:61032258-61032277 None:intergenic 50.0%
TGTGTGATAACCAGCAAGGG+CGG + chr4_4:61032315-61032334 None:intergenic 50.0%
GAAAGGAGGCTCAAGGATCT+TGG - chr4_4:61032733-61032752 Msa0692480:CDS 50.0%
CTTGGACTTTGCGGTGAAAG+TGG - chr4_4:61032751-61032770 Msa0692480:CDS 50.0%
! GGTGAAAGTGGTGATGTCCT+TGG - chr4_4:61032763-61032782 Msa0692480:CDS 50.0%
TCACATGCGTTCACCGTAGA+AGG + chr4_4:61032905-61032924 None:intergenic 50.0%
CATGCCTGCAGCTTGTAAAG+TGG - chr4_4:61032996-61033015 Msa0692480:intron 50.0%
AAGAACTTATGCCCGAGGGA+AGG - chr4_4:61033304-61033323 Msa0692480:CDS 50.0%
TGAAAATGGCTCCTTCCCTC+GGG + chr4_4:61033318-61033337 None:intergenic 50.0%
CTGAAAATGGCTCCTTCCCT+CGG + chr4_4:61033319-61033338 None:intergenic 50.0%
CCTCATGAGTGCCTTTGTGA+GGG + chr4_4:61033457-61033476 None:intergenic 50.0%
!! CCTCACAAAGGCACTCATGA+GGG - chr4_4:61033455-61033474 Msa0692480:CDS 50.0%
!! ACAAAGGCACTCATGAGGGT+TGG - chr4_4:61033459-61033478 Msa0692480:CDS 50.0%
GTTTGTAGATGCTGTGCGAC+AGG + chr4_4:61033563-61033582 None:intergenic 50.0%
TGCAGGTGCCTAAGAGGTTG+TGG - chr4_4:61030395-61030414 Msa0692480:three_prime_UTR 55.0%
CTGTAGTCACTCTGGCACTG+TGG + chr4_4:61031487-61031506 Msa0692470:three_prime_UTR 55.0%
GACAGAAAGGGGGCTCCTTA+GGG + chr4_4:61031570-61031589 Msa0692470:three_prime_UTR 55.0%
TGACAGAAAGGGGGCTCCTT+AGG + chr4_4:61031571-61031590 Msa0692470:three_prime_UTR 55.0%
AAGGAGCCCCCTTTCTGTCA+AGG - chr4_4:61031571-61031590 Msa0692480:CDS 55.0%
CTCCTGCCTTGACAGAAAGG+GGG + chr4_4:61031580-61031599 Msa0692470:three_prime_UTR 55.0%
GAAAACCCCTCGGATGGACA+TGG + chr4_4:61031684-61031703 Msa0692470:three_prime_UTR 55.0%
! TCCATCCGAGGGGTTTTCGA+CGG - chr4_4:61031686-61031705 Msa0692480:CDS 55.0%
TCCTACCGTCGAAAACCCCT+CGG + chr4_4:61031694-61031713 Msa0692470:three_prime_UTR 55.0%
!! GCAGAGTTGGCTCTGGACTA+TGG - chr4_4:61031975-61031994 Msa0692480:intron 55.0%
CTCGGATATCCCCAGTGTCA+AGG + chr4_4:61032036-61032055 Msa0692470:intron 55.0%
!! GGAAGCATCCCTTCTGGAAG+AGG + chr4_4:61032146-61032165 Msa0692470:three_prime_UTR 55.0%
! CTCCATCTGGGGTCATCTTG+AGG - chr4_4:61032229-61032248 Msa0692480:intron 55.0%
CACCTCAAGATGACCCCAGA+TGG + chr4_4:61032234-61032253 None:intergenic 55.0%
! GCCCATGAGCCGTGATAATG+AGG - chr4_4:61032253-61032272 Msa0692480:intron 55.0%
GCAGGATCGCAAGCTGAAAG+AGG - chr4_4:61032585-61032604 Msa0692480:intron 55.0%
!! CCCTCACAAAGGCACTCATG+AGG - chr4_4:61033454-61033473 Msa0692480:CDS 55.0%
CCCTCATGAGTGCCTTTGTG+AGG + chr4_4:61033458-61033477 None:intergenic 55.0%
GCTCTTCCTCTGACCTGCAC+TGG + chr4_4:61030684-61030703 Msa0692470:three_prime_UTR 60.0%
GGGGGCTCCTTAGGGCAAAT+AGG + chr4_4:61031562-61031581 Msa0692470:three_prime_UTR 60.0%
AGCCCCCTTTCTGTCAAGGC+AGG - chr4_4:61031575-61031594 Msa0692480:CDS 60.0%
ACCGTCGAAAACCCCTCGGA+TGG + chr4_4:61031690-61031709 Msa0692470:three_prime_UTR 60.0%
! TCCGAGGGGTTTTCGACGGT+AGG - chr4_4:61031690-61031709 Msa0692480:CDS 60.0%
! GCATCCCTTCTGGAAGAGGG+CGG + chr4_4:61032142-61032161 Msa0692470:three_prime_UTR 60.0%
! ACCAGCAAGGGCGGATTTGC+AGG + chr4_4:61032306-61032325 None:intergenic 60.0%
GCCTGCAAATCCGCCCTTGC+TGG - chr4_4:61032302-61032321 Msa0692480:intron 65.0%
Chromosome Type Strat End Strand Name
chr4_4 gene 61030025 61033679 61030025 ID=Msa0692480;Name=Msa0692480
chr4_4 mRNA 61030025 61033679 61030025 ID=Msa0692480-mRNA-1;Parent=Msa0692480;Name=Msa0692480-mRNA-1;_AED=0.15;_eAED=0.15;_QI=78|1|1|1|1|1|6|872|490
chr4_4 exon 61030025 61031115 61030025 ID=Msa0692480-mRNA-1:exon:16822;Parent=Msa0692480-mRNA-1
chr4_4 exon 61031358 61031762 61031358 ID=Msa0692480-mRNA-1:exon:16821;Parent=Msa0692480-mRNA-1
chr4_4 exon 61032100 61032225 61032100 ID=Msa0692480-mRNA-1:exon:16820;Parent=Msa0692480-mRNA-1
chr4_4 exon 61032642 61032853 61032642 ID=Msa0692480-mRNA-1:exon:16819;Parent=Msa0692480-mRNA-1
chr4_4 exon 61032986 61033014 61032986 ID=Msa0692480-mRNA-1:exon:16818;Parent=Msa0692480-mRNA-1
chr4_4 exon 61033120 61033679 61033120 ID=Msa0692480-mRNA-1:exon:16817;Parent=Msa0692480-mRNA-1
chr4_4 five_prime_UTR 61033602 61033679 61033602 ID=Msa0692480-mRNA-1:five_prime_utr;Parent=Msa0692480-mRNA-1
chr4_4 CDS 61033120 61033601 61033120 ID=Msa0692480-mRNA-1:cds;Parent=Msa0692480-mRNA-1
chr4_4 CDS 61032986 61033014 61032986 ID=Msa0692480-mRNA-1:cds;Parent=Msa0692480-mRNA-1
chr4_4 CDS 61032642 61032853 61032642 ID=Msa0692480-mRNA-1:cds;Parent=Msa0692480-mRNA-1
chr4_4 CDS 61032100 61032225 61032100 ID=Msa0692480-mRNA-1:cds;Parent=Msa0692480-mRNA-1
chr4_4 CDS 61031358 61031762 61031358 ID=Msa0692480-mRNA-1:cds;Parent=Msa0692480-mRNA-1
chr4_4 CDS 61030897 61031115 61030897 ID=Msa0692480-mRNA-1:cds;Parent=Msa0692480-mRNA-1
chr4_4 three_prime_UTR 61030025 61030896 61030025 ID=Msa0692480-mRNA-1:three_prime_utr;Parent=Msa0692480-mRNA-1
Gene Sequence

>Msa0692480

ATGGCTACAATCTTTTCTGGAGGTTCAGTTTCACTCTTCTCTTTTCACACAAACAAGGGTAAATCATCTTTTGCAACCAAAGGACCAACTCTTCATCTGAAGAAACCTTTCTCTGTCAAATCAGTAGCTTCACTTGGAACTGAAACATCACTGTCTCCAGCAGTTCAAACCTTCTGGAAGTGGCTACAAGAAGAAGGTGTTATCACTGCCAAGACACCAGTGAAAGCTAGTGTGGTACCAGAAGGTTTAGGATTGGTTGCACTCAAAGATATTTCTAGAAATGATGTTATTTTGCAGGTGCCTAAGAGGTTGTGGATAAATCCTGATGCTGTTGCTGCTTCAGAGATAGGGAAGGTGTGTAGTAAGTTGACACCATGGTTGTCTGTTATGTTGTTTCTTATTAGAGAAAGGTCAAGAGAGGATTCTGTTTGGAAGCATTACTTTGGTATTCTGCCACAGGAAACTGATTCTACAATATATTGGTCAGAGGAAGAGCTCCAAGAACTTCAAGGTACTCAACTTCTGAACACAACACTGTCTGTGAAAGAATATGTGAAGAATGAATGTCTGAAACTGGAAAAAGAAATCATTCTCCCTAATAAGAAGCTTTTTCCTTCTCCTGTGACACTGGATGACTTCTTCTGGGCATTTGGAATTCTCAGATCAAGGGCATTTTCTCGCCTTCGCAATGAAAATCTAGTTGTGATTCCACTTGCAGACTTGATTAACCACAGTGCCAGAGTGACTACAGATGATCATGCTTATGAAGTCAAAGGACCAGCTGGTCTTTTCTCTTGGGATTACCTATTTGCCCTAAGGAGCCCCCTTTCTGTCAAGGCAGGAGAACAGGTGTATATCCAATATGATTTAAACAAAAGCAATGCAGAGTTGGCTCTGGACTATGGTTTCATTGAACCAAATGCAGATCGATATGCATACACCTTGACACTGGGGATATCCGAGTCAGACCCTTTTTTTGACGACAAAGTAGACGTTGCTGAGACCAATGGTTTTTCTCAGACAGCATACTTTGACATCTTCTATAACCGCCCTCTTCCAGAAGGGATGCTTCCATATCTGAGATTAGTAGCACTAGGGGGTACCGATGCTTTCTTATTGGAATCACTGTTCAGAGACTCCATCTGGGGTCATCTTGAGGTGCCCATGAGCCGTGATAATGAGGAGCTAGTATGCAAAGCGGTTCGAGATGCCTGCAAATCCGCCCTTGCTGGTTATCACACAACCATTGAACAGGATCGCAAGCTGAAAGAGGCAAATCTAGATTCAAGGCTTGCAATAGCAGTCGGAATAAGAGAAGGGGAAAAAATGATCCTGCGGCAAATTGATGAGATCTTCGAGCAGAAAGAATTGGAACTAGACCAGTTGGAATATTATCAAGAAAGGAGGCTCAAGGATCTTGGACTTTGCGGTGAAAGTGGTGATGTCCTTGGAGACCTTGCAAAATACTTCTAA

Protein sequence

>Msa0692480

MATIFSGGSVSLFSFHTNKGKSSFATKGPTLHLKKPFSVKSVASLGTETSLSPAVQTFWKWLQEEGVITAKTPVKASVVPEGLGLVALKDISRNDVILQVPKRLWINPDAVAASEIGKVCSKLTPWLSVMLFLIRERSREDSVWKHYFGILPQETDSTIYWSEEELQELQGTQLLNTTLSVKEYVKNECLKLEKEIILPNKKLFPSPVTLDDFFWAFGILRSRAFSRLRNENLVVIPLADLINHSARVTTDDHAYEVKGPAGLFSWDYLFALRSPLSVKAGEQVYIQYDLNKSNAELALDYGFIEPNADRYAYTLTLGISESDPFFDDKVDVAETNGFSQTAYFDIFYNRPLPEGMLPYLRLVALGGTDAFLLESLFRDSIWGHLEVPMSRDNEELVCKAVRDACKSALAGYHTTIEQDRKLKEANLDSRLAIAVGIREGEKMILRQIDEIFEQKELELDQLEYYQERRLKDLGLCGESGDVLGDLAKYF*