AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0375570


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0375570 MtrunA17_Chr3g0125881 98.134 268 5 0 1 268 1 268 0.0 543
Msa0375570 MtrunA17_Chr6g0457731 91.379 58 5 0 162 219 1 58 8.52e-33 114
Msa0375570 MtrunA17_Chr7g0255661 31.707 164 91 6 121 267 100 259 1.10e-19 85.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0375570 AT1G77090.1 77.232 224 46 2 49 268 38 260 2.52e-126 360
Msa0375570 AT3G56650.1 30.247 162 92 6 123 267 105 262 6.84e-18 81.3

Find 87 sgRNAs with CRISPR-Local

Find 223 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATCTGCACTCTTGTTCTTTA+AGG 0.103321 3_1:+75352285 Msa0375570:five_prime_UTR
TCACGAGATGCTATTCTTTC+AGG 0.173071 3_1:+75355196 Msa0375570:three_prime_UTR
CCATTCTTGAGGCACTTTAA+AGG 0.210920 3_1:-75354060 None:intergenic
TTAAAGGTGTATGGAATAAT+AGG 0.298400 3_1:-75354044 None:intergenic
GGTGAACAGAAGAGCAGTTT+TGG 0.313029 3_1:+75352527 Msa0375570:CDS
GTGTTGTGGGTTTCTTCTAT+AGG 0.339103 3_1:-75352391 None:intergenic
GCTTCTGGAGTTTCCTTGTT+GGG 0.353626 3_1:+75352549 Msa0375570:CDS
TACTTCATAACCTTAGCCTT+TGG 0.356614 3_1:+75352212 Msa0375570:five_prime_UTR
GGCTTCTGGAGTTTCCTTGT+TGG 0.366718 3_1:+75352548 Msa0375570:CDS
CTATACTTGTTTGGTGTAAC+CGG 0.376509 3_1:+75354742 Msa0375570:CDS
CTTCTAGCAGGGAGAATTCC+TGG 0.384668 3_1:+75352609 Msa0375570:CDS
TGAGGCACTTTAAAGGTGTA+TGG 0.385118 3_1:-75354053 None:intergenic
TTCATTACGGCCACCGCTGC+TGG 0.392527 3_1:+75354712 Msa0375570:CDS
TGTCCTCCTGATTTCTCATC+TGG 0.394737 3_1:-75354005 None:intergenic
TTGTTTGGTGTAACCGGTAA+TGG 0.408086 3_1:+75354748 Msa0375570:CDS
TTACATTGTTATGCTTAGGC+AGG 0.414782 3_1:+75355106 Msa0375570:three_prime_UTR
GGCAACCGCCTATACTTGTT+TGG 0.416295 3_1:+75354733 Msa0375570:CDS
ACAATGTAACAAAACTGTTA+TGG 0.423744 3_1:-75355092 None:intergenic
GACAAAGTGATCAGTGCATT+TGG 0.425180 3_1:+75354583 Msa0375570:CDS
GTTAACGAACCTTGTTCATC+TGG 0.425267 3_1:-75352642 None:intergenic
ATGAGTAAACATACCATTAC+CGG 0.428524 3_1:-75354761 None:intergenic
AATGCACTGATCACTTTGTC+TGG 0.429585 3_1:-75354580 None:intergenic
CGCAGGCCAGATGAGAAATC+AGG 0.439964 3_1:+75353999 Msa0375570:CDS
GTTATGAAGTTGATCACTCT+TGG 0.444783 3_1:+75355147 Msa0375570:three_prime_UTR
TGATAAATGTTCATCTTTGT+TGG 0.447757 3_1:+75352506 Msa0375570:CDS
CGGTTACACCAAACAAGTAT+AGG 0.450219 3_1:-75354741 None:intergenic
TGCACTCTTGTTCTTTAAGG+TGG 0.451949 3_1:+75352288 Msa0375570:five_prime_UTR
CCTTTAAAGTGCCTCAAGAA+TGG 0.454989 3_1:+75354060 Msa0375570:CDS
GTTGGATATACATGTGTTGT+GGG 0.458582 3_1:-75352404 None:intergenic
CCAAGATCTGCTATTGATAC+AGG 0.460727 3_1:-75354339 None:intergenic
TCCAGGAGTGAGTTTGGCTG+TGG 0.472811 3_1:+75352575 Msa0375570:CDS
CTTTAAAGTGCCTCAAGAAT+GGG 0.477276 3_1:+75354061 Msa0375570:CDS
GCATTTGGTCCTGAAATGAT+TGG 0.486722 3_1:+75354598 Msa0375570:CDS
ACCACAGCCAAACTCACTCC+TGG 0.493815 3_1:-75352576 None:intergenic
GTTAAACAAGGTCTTCTAGC+AGG 0.494158 3_1:+75352597 Msa0375570:CDS
GATTCACAGAAATCCCAATC+AGG 0.494640 3_1:-75355030 None:intergenic
TATGAAGTAAAAGATATTTG+TGG 0.500616 3_1:-75352198 None:intergenic
CCTGTATCAATAGCAGATCT+TGG 0.502162 3_1:+75354339 Msa0375570:CDS
CCATCGGAGAATCTAAGAAC+AGG 0.502404 3_1:-75354426 None:intergenic
AACTTACTATCAGTTTGAGC+TGG 0.504221 3_1:+75354675 Msa0375570:CDS
AAGCACATCATCAATCTTCG+TGG 0.509428 3_1:+75352332 Msa0375570:five_prime_UTR
ATCATCAATCTTCGTGGACA+TGG 0.513825 3_1:+75352338 Msa0375570:exon
AAGTAGAGTTGTTGTGGACA+AGG 0.522596 3_1:-75352367 None:intergenic
TGTAGTGTCTCTTCCACTGA+AGG 0.524498 3_1:-75354881 None:intergenic
CAGGAGGACACGGTGTTGGA+TGG 0.524720 3_1:+75354018 Msa0375570:CDS
GCATCTCGTGAGTACTTAGC+AGG 0.533314 3_1:-75355184 None:intergenic
ATAGGAAAGTAGAGTTGTTG+TGG 0.538638 3_1:-75352373 None:intergenic
TAGGCGGTTGCCAGCAGCGG+TGG 0.539049 3_1:-75354722 None:intergenic
AAATCAGGAGGACACGGTGT+TGG 0.539618 3_1:+75354014 Msa0375570:CDS
CAGACGTCCTTCCTTAGAGC+TGG 0.541704 3_1:-75354388 None:intergenic
TCAAATGTTGCAGAACATGA+AGG 0.543778 3_1:+75354649 Msa0375570:CDS
TGGAGAAAATGTGGAAGGGA+AGG 0.549881 3_1:+75354618 Msa0375570:CDS
TACATTGTTATGCTTAGGCA+GGG 0.550256 3_1:+75355107 Msa0375570:three_prime_UTR
TCTTAATTGCAGGCCTTCAG+TGG 0.551749 3_1:+75354868 Msa0375570:intron
AAACTGTTATGGTATATTGA+AGG 0.553878 3_1:-75355081 None:intergenic
GGTTGGATATACATGTGTTG+TGG 0.559670 3_1:-75352405 None:intergenic
TTTGTTACATTGTTATGCTT+AGG 0.563767 3_1:+75355102 Msa0375570:three_prime_UTR
TGAAATGATTGGAGAAAATG+TGG 0.574438 3_1:+75354609 Msa0375570:CDS
ACATGGAAGTTGAGGTCCAA+AGG 0.575208 3_1:-75352228 None:intergenic
GTGGCCGTAATGAAAATATG+AGG 0.575485 3_1:-75354703 None:intergenic
ATCACCTCTTCCCATTCTTG+AGG 0.579716 3_1:-75354071 None:intergenic
CACTCCTGGAAAACCCAACA+AGG 0.583287 3_1:-75352562 None:intergenic
AAATATTAACATGGAAGTTG+AGG 0.583993 3_1:-75352236 None:intergenic
CAGGTTGGAGGACATATCGC+AGG 0.585205 3_1:+75353982 Msa0375570:intron
GTATCAATAGCAGATCTTGG+TGG 0.585808 3_1:+75354342 Msa0375570:CDS
TGTGCATGCTTCAGTCTCAA+AGG 0.591583 3_1:+75352458 Msa0375570:CDS
TCCCAATCAGGAAAAGTAGT+GGG 0.596078 3_1:-75355018 None:intergenic
CTGTCTGAGCCAGATGAACA+AGG 0.596600 3_1:+75352633 Msa0375570:CDS
ATCCCAATCAGGAAAAGTAG+TGG 0.597996 3_1:-75355019 None:intergenic
GTATAGGCGGTTGCCAGCAG+CGG 0.599408 3_1:-75354725 None:intergenic
CAAATGTTGCAGAACATGAA+GGG 0.602320 3_1:+75354650 Msa0375570:CDS
AAGTTGAGGTCCAAAGGCTA+AGG 0.605211 3_1:-75352222 None:intergenic
AGTTTGGCTGTGGTTAAACA+AGG 0.615204 3_1:+75352585 Msa0375570:CDS
CCTGTTCTTAGATTCTCCGA+TGG 0.616850 3_1:+75354426 Msa0375570:CDS
TCATCTGGCTCAGACAGACC+AGG 0.619141 3_1:-75352627 None:intergenic
TTATACAACTCGAAAAGAGT+CGG 0.622471 3_1:-75354922 None:intergenic
ATGATTGGAGAAAATGTGGA+AGG 0.623515 3_1:+75354613 Msa0375570:CDS
AGTGCCTCAAGAATGGGAAG+AGG 0.627362 3_1:+75354067 Msa0375570:CDS
TTAAACAAGGTCTTCTAGCA+GGG 0.627829 3_1:+75352598 Msa0375570:CDS
ATTGTTATGCTTAGGCAGGG+TGG 0.627880 3_1:+75355110 Msa0375570:three_prime_UTR
AAGTAGTGGAAATATTAACA+TGG 0.631287 3_1:-75352245 None:intergenic
GCACTGATCACTTTGTCTGG+AGG 0.652054 3_1:-75354577 None:intergenic
TGATTGGAGAAAATGTGGAA+GGG 0.655080 3_1:+75354614 Msa0375570:CDS
GATGAGAAATCAGGAGGACA+CGG 0.664202 3_1:+75354008 Msa0375570:CDS
GCCGTAATGAAAATATGAGG+AGG 0.673890 3_1:-75354700 None:intergenic
AGGCCAGATGAGAAATCAGG+AGG 0.693963 3_1:+75354002 Msa0375570:CDS
TTACACCAAACAAGTATAGG+CGG 0.725370 3_1:-75354738 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! GTAAAATATATTTAGTTAAT+AGG + chr3_1:75352869-75352888 Msa0375570:intron 10.0%
!! AAAACATATATATAATTAAG+TGG + chr3_1:75353428-75353447 Msa0375570:intron 10.0%
!! AAACATATATATAATTAAGT+GGG + chr3_1:75353429-75353448 Msa0375570:intron 10.0%
!!! TTTTCCCTATATATTAAATT+CGG + chr3_1:75352686-75352705 Msa0375570:intron 15.0%
!!! TCAAATTTTGAAATCATAAT+GGG + chr3_1:75352747-75352766 Msa0375570:intron 15.0%
!!! AAGAAGTGTAATAAAAAAAT+TGG + chr3_1:75352813-75352832 Msa0375570:intron 15.0%
!!! AGAAGTGTAATAAAAAAATT+GGG + chr3_1:75352814-75352833 Msa0375570:intron 15.0%
!! TAATAAAAAAATTGGGAATT+TGG + chr3_1:75352821-75352840 Msa0375570:intron 15.0%
!! AATAAAAAAATTGGGAATTT+GGG + chr3_1:75352822-75352841 Msa0375570:intron 15.0%
!!! TCTATTTTATGATGTTTTTT+GGG - chr3_1:75353301-75353320 None:intergenic 15.0%
!!! ATCTATTTTATGATGTTTTT+TGG - chr3_1:75353302-75353321 None:intergenic 15.0%
!!! TATTATGCATAAATATCTTT+TGG + chr3_1:75353382-75353401 Msa0375570:intron 15.0%
!! AACATATATATAATTAAGTG+GGG + chr3_1:75353430-75353449 Msa0375570:intron 15.0%
!! ATAAATAAAATCATTTGCAA+CGG - chr3_1:75353765-75353784 None:intergenic 15.0%
!!! ATTTCATATTTTCAATTCAT+TGG - chr3_1:75354957-75354976 None:intergenic 15.0%
!! ATAACATTCATAAAAAGTAG+TGG - chr3_1:75352262-75352281 None:intergenic 20.0%
!!! GTCAAATTTTGAAATCATAA+TGG + chr3_1:75352746-75352765 Msa0375570:intron 20.0%
!! AAATTGCTCATATATAGTTA+TGG - chr3_1:75353237-75353256 None:intergenic 20.0%
!!! AAATATCTTTTGGCATTTAT+TGG + chr3_1:75353392-75353411 Msa0375570:intron 20.0%
!! ACATATATATAATTAAGTGG+GGG + chr3_1:75353431-75353450 Msa0375570:intron 20.0%
!! TTATTTGACAATATTTCAAG+AGG + chr3_1:75353556-75353575 Msa0375570:intron 20.0%
!! TGAAAGTTAAAATGAACAAA+AGG - chr3_1:75354468-75354487 None:intergenic 20.0%
!!! TTTTGTTCATTTTAACTTTC+AGG + chr3_1:75354467-75354486 Msa0375570:intron 20.0%
!! AATCTTTAATATGCAGTTAT+TGG + chr3_1:75354526-75354545 Msa0375570:intron 20.0%
!! TAGAAAATAATCTTAATTGC+AGG + chr3_1:75354858-75354877 Msa0375570:intron 20.0%
! AAATATTAACATGGAAGTTG+AGG - chr3_1:75352239-75352258 None:intergenic 25.0%
!! AAGTAGTGGAAATATTAACA+TGG - chr3_1:75352248-75352267 None:intergenic 25.0%
!!! ACTTCATTTTTAACTGAACA+GGG - chr3_1:75352429-75352448 None:intergenic 25.0%
!!! AACTTCATTTTTAACTGAAC+AGG - chr3_1:75352430-75352449 None:intergenic 25.0%
! TGATAAATGTTCATCTTTGT+TGG + chr3_1:75352506-75352525 Msa0375570:CDS 25.0%
! TGAACCATATGTGTAATAAT+CGG - chr3_1:75352722-75352741 None:intergenic 25.0%
! ATTATTACACATATGGTTCA+AGG + chr3_1:75352722-75352741 Msa0375570:intron 25.0%
! TTATTACACATATGGTTCAA+GGG + chr3_1:75352723-75352742 Msa0375570:intron 25.0%
!!! CAAAACTTTTAGAAAACAAG+TGG - chr3_1:75352850-75352869 None:intergenic 25.0%
!!! AAACTTAGGGATATTTTTGA+AGG + chr3_1:75352900-75352919 Msa0375570:intron 25.0%
!! TAATGCACTATCTAAAACTT+GGG + chr3_1:75352986-75353005 Msa0375570:intron 25.0%
! ACCAGTAATTATAAGTTGTA+GGG - chr3_1:75353062-75353081 None:intergenic 25.0%
! TACCAGTAATTATAAGTTGT+AGG - chr3_1:75353063-75353082 None:intergenic 25.0%
! ACTGGTATAAGTTAGTAAAT+CGG + chr3_1:75353076-75353095 Msa0375570:intron 25.0%
!! ACATAATACTGTTGTAGTTT+TGG + chr3_1:75353136-75353155 Msa0375570:intron 25.0%
! ATATATGAGCAATTTCAGAA+CGG + chr3_1:75353242-75353261 Msa0375570:intron 25.0%
! CATCATAAAATAGATATGCA+CGG + chr3_1:75353307-75353326 Msa0375570:intron 25.0%
! ATCATAAAATAGATATGCAC+GGG + chr3_1:75353308-75353327 Msa0375570:intron 25.0%
! AGGAAAAGGATTAAATGAAA+TGG - chr3_1:75353665-75353684 None:intergenic 25.0%
!!! TGCAAATCATTGTTTTGTTA+AGG - chr3_1:75353727-75353746 None:intergenic 25.0%
!! TTTGAAGTTTCAATTTCTTG+TGG - chr3_1:75353800-75353819 None:intergenic 25.0%
! CAAGAAATTGAAACTTCAAA+TGG + chr3_1:75353800-75353819 Msa0375570:intron 25.0%
! ATTAACATCAAGTCTACAAA+TGG - chr3_1:75353857-75353876 None:intergenic 25.0%
! CATTAAAAAAATTAGCAAGC+TGG - chr3_1:75353918-75353937 None:intergenic 25.0%
!!! CAGCTTGCTAATTTTTTTAA+TGG + chr3_1:75353916-75353935 Msa0375570:intron 25.0%
!! TTAAAGGTGTATGGAATAAT+AGG - chr3_1:75354047-75354066 None:intergenic 25.0%
! TAAAAGAGAATGAAATCTCT+CGG - chr3_1:75354209-75354228 None:intergenic 25.0%
! AAAATGAACAAAAGGAAATC+AGG - chr3_1:75354460-75354479 None:intergenic 25.0%
! GATGCTACAATAGAAAAAAT+TGG + chr3_1:75354553-75354572 Msa0375570:CDS 25.0%
! AAACTGTTATGGTATATTGA+AGG - chr3_1:75355084-75355103 None:intergenic 25.0%
! ACAATGTAACAAAACTGTTA+TGG - chr3_1:75355095-75355114 None:intergenic 25.0%
! TTTGTTACATTGTTATGCTT+AGG + chr3_1:75355102-75355121 Msa0375570:three_prime_UTR 25.0%
GTGGCCGAATTTAATATATA+GGG - chr3_1:75352693-75352712 None:intergenic 30.0%
AGTGGCCGAATTTAATATAT+AGG - chr3_1:75352694-75352713 None:intergenic 30.0%
TTTCCCGATTATTACACATA+TGG + chr3_1:75352715-75352734 Msa0375570:intron 30.0%
GAACCATATGTGTAATAATC+GGG - chr3_1:75352721-75352740 None:intergenic 30.0%
TATTACACATATGGTTCAAG+GGG + chr3_1:75352724-75352743 Msa0375570:intron 30.0%
AATAGGGTTGTGATAAACTT+AGG + chr3_1:75352886-75352905 Msa0375570:intron 30.0%
ATAGGGTTGTGATAAACTTA+GGG + chr3_1:75352887-75352906 Msa0375570:intron 30.0%
!! TAGGGATATTTTTGAAGGAT+CGG + chr3_1:75352905-75352924 Msa0375570:intron 30.0%
! GAAGCGAAAATAAGTTGAAA+TGG + chr3_1:75352941-75352960 Msa0375570:intron 30.0%
!!! AGTTGAAATGGTTTTGAAAG+TGG + chr3_1:75352953-75352972 Msa0375570:intron 30.0%
!!! GTTGAAATGGTTTTGAAAGT+GGG + chr3_1:75352954-75352973 Msa0375570:intron 30.0%
! CTAATGCACTATCTAAAACT+TGG + chr3_1:75352985-75353004 Msa0375570:intron 30.0%
TCCCTACAACTTATAATTAC+TGG + chr3_1:75353058-75353077 Msa0375570:intron 30.0%
CTGGTATAAGTTAGTAAATC+GGG + chr3_1:75353077-75353096 Msa0375570:intron 30.0%
TATTATGTTGCAAACTTGCA+AGG - chr3_1:75353124-75353143 None:intergenic 30.0%
TAAACTTGTGCAATTGTAGA+TGG + chr3_1:75353176-75353195 Msa0375570:intron 30.0%
!!! AGATGGTTTTAAGACTTATC+TGG + chr3_1:75353193-75353212 Msa0375570:intron 30.0%
TATATGAGCAATTTCAGAAC+GGG + chr3_1:75353243-75353262 Msa0375570:intron 30.0%
TCATAAAATAGATATGCACG+GGG + chr3_1:75353309-75353328 Msa0375570:intron 30.0%
AATATTTCAAGAGGACTTCT+AGG + chr3_1:75353565-75353584 Msa0375570:intron 30.0%
ATTTATCAGACAAAGAGAGT+TGG - chr3_1:75353623-75353642 None:intergenic 30.0%
!! TCATTGTTTTGTTAAGGTCA+AGG - chr3_1:75353721-75353740 None:intergenic 30.0%
GAAATTGAAACTTCAAATGG+AGG + chr3_1:75353803-75353822 Msa0375570:intron 30.0%
! TCAACACATTTCTTTTACCA+TGG - chr3_1:75353829-75353848 None:intergenic 30.0%
TGGTAAAAGAAATGTGTTGA+TGG + chr3_1:75353829-75353848 Msa0375570:intron 30.0%
! GAAGTATTTAGAACATAGAG+TGG + chr3_1:75354136-75354155 Msa0375570:intron 30.0%
AACATAGAGTGGACATTATT+TGG + chr3_1:75354147-75354166 Msa0375570:intron 30.0%
ACATAGAGTGGACATTATTT+GGG + chr3_1:75354148-75354167 Msa0375570:intron 30.0%
TTTACTCACATTTGATCATC+TGG + chr3_1:75354240-75354259 Msa0375570:intron 30.0%
TAAGCATACATTTGCTTAAC+AGG + chr3_1:75354314-75354333 Msa0375570:intron 30.0%
!!! ATTTTAACTTTCAGGAGACA+AGG + chr3_1:75354475-75354494 Msa0375570:intron 30.0%
! ACATTTTCTCCAATCATTTC+AGG - chr3_1:75354610-75354629 None:intergenic 30.0%
TGAAATGATTGGAGAAAATG+TGG + chr3_1:75354609-75354628 Msa0375570:CDS 30.0%
ATGAGTAAACATACCATTAC+CGG - chr3_1:75354764-75354783 None:intergenic 30.0%
TTATACAACTCGAAAAGAGT+CGG - chr3_1:75354925-75354944 None:intergenic 30.0%
!!! CTCTTTTCGAGTTGTATAAT+TGG + chr3_1:75354926-75354945 Msa0375570:exon 30.0%
! TACTTCATAACCTTAGCCTT+TGG + chr3_1:75352212-75352231 Msa0375570:five_prime_UTR 35.0%
ATCTGCACTCTTGTTCTTTA+AGG + chr3_1:75352285-75352304 Msa0375570:five_prime_UTR 35.0%
ATAGGAAAGTAGAGTTGTTG+TGG - chr3_1:75352376-75352395 None:intergenic 35.0%
GTTGGATATACATGTGTTGT+GGG - chr3_1:75352407-75352426 None:intergenic 35.0%
!! CATTTTTAACTGAACAGGGT+TGG - chr3_1:75352425-75352444 None:intergenic 35.0%
TTAAACAAGGTCTTCTAGCA+GGG + chr3_1:75352598-75352617 Msa0375570:CDS 35.0%
GTGTAATAATCGGGAAAAAG+TGG - chr3_1:75352712-75352731 None:intergenic 35.0%
!! ATCATAATGGGTTACCTAAC+AGG + chr3_1:75352759-75352778 Msa0375570:intron 35.0%
!! TCATAATGGGTTACCTAACA+GGG + chr3_1:75352760-75352779 Msa0375570:intron 35.0%
GTTGCATTAATTCAATGCCA+AGG - chr3_1:75352788-75352807 None:intergenic 35.0%
ATAGCCAACTTCTCAAATGA+AGG + chr3_1:75353016-75353035 Msa0375570:intron 35.0%
CTTACCTTCATTTGAGAAGT+TGG - chr3_1:75353023-75353042 None:intergenic 35.0%
AGTTAGTAAATCGGGTTTAG+AGG + chr3_1:75353085-75353104 Msa0375570:intron 35.0%
GTTAGTAAATCGGGTTTAGA+GGG + chr3_1:75353086-75353105 Msa0375570:intron 35.0%
CTTATCTGGTGAGCTTAAAT+AGG + chr3_1:75353207-75353226 Msa0375570:intron 35.0%
ATATGAGCAATTTCAGAACG+GGG + chr3_1:75353244-75353263 Msa0375570:intron 35.0%
! TTTTGGCATTTATTGGTCAC+AGG + chr3_1:75353399-75353418 Msa0375570:intron 35.0%
ATTGTGCATTGTAGCTAAGT+GGG - chr3_1:75353485-75353504 None:intergenic 35.0%
ACTACCACCACAAAATGAAA+AGG + chr3_1:75353515-75353534 Msa0375570:intron 35.0%
CTACCACCACAAAATGAAAA+GGG + chr3_1:75353516-75353535 Msa0375570:intron 35.0%
TACCACCACAAAATGAAAAG+GGG + chr3_1:75353517-75353536 Msa0375570:intron 35.0%
! TAGTAAGTTTTTGACCAGAC+AGG + chr3_1:75353963-75353982 Msa0375570:intron 35.0%
!! CTTTAAAGTGCCTCAAGAAT+GGG + chr3_1:75354061-75354080 Msa0375570:CDS 35.0%
CTGTTAAGTTCAGTCTCAAA+TGG + chr3_1:75354109-75354128 Msa0375570:intron 35.0%
TGAAATCTCTCGGCTAAAAA+GGG - chr3_1:75354199-75354218 None:intergenic 35.0%
ATGAAATCTCTCGGCTAAAA+AGG - chr3_1:75354200-75354219 None:intergenic 35.0%
!! TTTGAGATTTTCCAGCTCTA+AGG + chr3_1:75354377-75354396 Msa0375570:CDS 35.0%
ATGATTGGAGAAAATGTGGA+AGG + chr3_1:75354613-75354632 Msa0375570:CDS 35.0%
TGATTGGAGAAAATGTGGAA+GGG + chr3_1:75354614-75354633 Msa0375570:CDS 35.0%
TCAAATGTTGCAGAACATGA+AGG + chr3_1:75354649-75354668 Msa0375570:CDS 35.0%
CAAATGTTGCAGAACATGAA+GGG + chr3_1:75354650-75354669 Msa0375570:CDS 35.0%
AACTTACTATCAGTTTGAGC+TGG + chr3_1:75354675-75354694 Msa0375570:CDS 35.0%
! GCCTCCTCATATTTTCATTA+CGG + chr3_1:75354699-75354718 Msa0375570:CDS 35.0%
TTACACCAAACAAGTATAGG+CGG - chr3_1:75354741-75354760 None:intergenic 35.0%
!! CTATACTTGTTTGGTGTAAC+CGG + chr3_1:75354742-75354761 Msa0375570:CDS 35.0%
TTACATTGTTATGCTTAGGC+AGG + chr3_1:75355106-75355125 Msa0375570:three_prime_UTR 35.0%
TACATTGTTATGCTTAGGCA+GGG + chr3_1:75355107-75355126 Msa0375570:three_prime_UTR 35.0%
! GTTATGAAGTTGATCACTCT+TGG + chr3_1:75355147-75355166 Msa0375570:three_prime_UTR 35.0%
! TGCACTCTTGTTCTTTAAGG+TGG + chr3_1:75352288-75352307 Msa0375570:five_prime_UTR 40.0%
AAGCACATCATCAATCTTCG+TGG + chr3_1:75352332-75352351 Msa0375570:five_prime_UTR 40.0%
ATCATCAATCTTCGTGGACA+TGG + chr3_1:75352338-75352357 Msa0375570:exon 40.0%
AAGTAGAGTTGTTGTGGACA+AGG - chr3_1:75352370-75352389 None:intergenic 40.0%
GTGTTGTGGGTTTCTTCTAT+AGG - chr3_1:75352394-75352413 None:intergenic 40.0%
GGTTGGATATACATGTGTTG+TGG - chr3_1:75352408-75352427 None:intergenic 40.0%
AGTTTGGCTGTGGTTAAACA+AGG + chr3_1:75352585-75352604 Msa0375570:CDS 40.0%
GTTAAACAAGGTCTTCTAGC+AGG + chr3_1:75352597-75352616 Msa0375570:CDS 40.0%
GTTAACGAACCTTGTTCATC+TGG - chr3_1:75352645-75352664 None:intergenic 40.0%
AAGGATCGGTAAGAATGAGA+GGG + chr3_1:75352919-75352938 Msa0375570:intron 40.0%
TTGTGCATTGTAGCTAAGTG+GGG - chr3_1:75353484-75353503 None:intergenic 40.0%
CATTGTGCATTGTAGCTAAG+TGG - chr3_1:75353486-75353505 None:intergenic 40.0%
! AGTGACCCCTTTTCATTTTG+TGG - chr3_1:75353525-75353544 None:intergenic 40.0%
CAAAATGAAAAGGGGTCACT+AGG + chr3_1:75353525-75353544 Msa0375570:intron 40.0%
ACAAAGAGAGTTGGCATAGA+AGG - chr3_1:75353614-75353633 None:intergenic 40.0%
GCAACGAATGCTTAAGGAAA+AGG - chr3_1:75353679-75353698 None:intergenic 40.0%
TTTGTTAAGGTCAAGGTGAC+AGG - chr3_1:75353714-75353733 None:intergenic 40.0%
! AAGTTTTTGACCAGACAGGT+TGG + chr3_1:75353967-75353986 Msa0375570:intron 40.0%
! TGAGGCACTTTAAAGGTGTA+TGG - chr3_1:75354056-75354075 None:intergenic 40.0%
! CCATTCTTGAGGCACTTTAA+AGG - chr3_1:75354063-75354082 None:intergenic 40.0%
!! CCTTTAAAGTGCCTCAAGAA+TGG + chr3_1:75354060-75354079 Msa0375570:CDS 40.0%
ACTCACATTTGATCATCTGG+AGG + chr3_1:75354243-75354262 Msa0375570:intron 40.0%
CCAAGATCTGCTATTGATAC+AGG - chr3_1:75354342-75354361 None:intergenic 40.0%
CCTGTATCAATAGCAGATCT+TGG + chr3_1:75354339-75354358 Msa0375570:CDS 40.0%
GTATCAATAGCAGATCTTGG+TGG + chr3_1:75354342-75354361 Msa0375570:CDS 40.0%
!!! AGATTTTCCAGCTCTAAGGA+AGG + chr3_1:75354381-75354400 Msa0375570:CDS 40.0%
AAATCAGGCTAACTCACCAT+CGG - chr3_1:75354445-75354464 None:intergenic 40.0%
! AATGCACTGATCACTTTGTC+TGG - chr3_1:75354583-75354602 None:intergenic 40.0%
GACAAAGTGATCAGTGCATT+TGG + chr3_1:75354583-75354602 Msa0375570:CDS 40.0%
GCATTTGGTCCTGAAATGAT+TGG + chr3_1:75354598-75354617 Msa0375570:CDS 40.0%
GCCGTAATGAAAATATGAGG+AGG - chr3_1:75354703-75354722 None:intergenic 40.0%
GTGGCCGTAATGAAAATATG+AGG - chr3_1:75354706-75354725 None:intergenic 40.0%
CGGTTACACCAAACAAGTAT+AGG - chr3_1:75354744-75354763 None:intergenic 40.0%
!! TTGTTTGGTGTAACCGGTAA+TGG + chr3_1:75354748-75354767 Msa0375570:CDS 40.0%
TTGTTTATGACAGTGCAGAC+TGG - chr3_1:75354812-75354831 None:intergenic 40.0%
!! TTCCCACTACTTTTCCTGAT+TGG + chr3_1:75355016-75355035 Msa0375570:three_prime_UTR 40.0%
!! TCCCACTACTTTTCCTGATT+GGG + chr3_1:75355017-75355036 Msa0375570:three_prime_UTR 40.0%
TCCCAATCAGGAAAAGTAGT+GGG - chr3_1:75355021-75355040 None:intergenic 40.0%
ATCCCAATCAGGAAAAGTAG+TGG - chr3_1:75355022-75355041 None:intergenic 40.0%
GATTCACAGAAATCCCAATC+AGG - chr3_1:75355033-75355052 None:intergenic 40.0%
AAGTTGAGGTCCAAAGGCTA+AGG - chr3_1:75352225-75352244 None:intergenic 45.0%
ACATGGAAGTTGAGGTCCAA+AGG - chr3_1:75352231-75352250 None:intergenic 45.0%
TGTGCATGCTTCAGTCTCAA+AGG + chr3_1:75352458-75352477 Msa0375570:CDS 45.0%
! GGTGAACAGAAGAGCAGTTT+TGG + chr3_1:75352527-75352546 Msa0375570:CDS 45.0%
!!! AGAAGAGCAGTTTTGGCTTC+TGG + chr3_1:75352534-75352553 Msa0375570:CDS 45.0%
!! GCTTCTGGAGTTTCCTTGTT+GGG + chr3_1:75352549-75352568 Msa0375570:CDS 45.0%
! GTTTCCTTGTTGGGTTTTCC+AGG + chr3_1:75352558-75352577 Msa0375570:CDS 45.0%
GAAGGATCGGTAAGAATGAG+AGG + chr3_1:75352918-75352937 Msa0375570:intron 45.0%
! CAGAACGGGGTCTTATATAC+AGG + chr3_1:75353257-75353276 Msa0375570:intron 45.0%
! GACCCCTTTTCATTTTGTGG+TGG - chr3_1:75353522-75353541 None:intergenic 45.0%
TCTGGTGCAACGAATGCTTA+AGG - chr3_1:75353685-75353704 None:intergenic 45.0%
GAAACTTCAAATGGAGGCCA+TGG + chr3_1:75353809-75353828 Msa0375570:intron 45.0%
!! TTTTTGACCAGACAGGTTGG+AGG + chr3_1:75353970-75353989 Msa0375570:intron 45.0%
TGTCCTCCTGATTTCTCATC+TGG - chr3_1:75354008-75354027 None:intergenic 45.0%
GATGAGAAATCAGGAGGACA+CGG + chr3_1:75354008-75354027 Msa0375570:CDS 45.0%
ATCACCTCTTCCCATTCTTG+AGG - chr3_1:75354074-75354093 None:intergenic 45.0%
AATCTCTCGGCTAAAAAGGG+AGG - chr3_1:75354196-75354215 None:intergenic 45.0%
CCATCGGAGAATCTAAGAAC+AGG - chr3_1:75354429-75354448 None:intergenic 45.0%
CCTGTTCTTAGATTCTCCGA+TGG + chr3_1:75354426-75354445 Msa0375570:CDS 45.0%
TGGAGAAAATGTGGAAGGGA+AGG + chr3_1:75354618-75354637 Msa0375570:CDS 45.0%
TCTTAATTGCAGGCCTTCAG+TGG + chr3_1:75354868-75354887 Msa0375570:intron 45.0%
TGTAGTGTCTCTTCCACTGA+AGG - chr3_1:75354884-75354903 None:intergenic 45.0%
ATTGTTATGCTTAGGCAGGG+TGG + chr3_1:75355110-75355129 Msa0375570:three_prime_UTR 45.0%
!! TTATTAAGAAAAATATAATT+TGG - chr3_1:75352314-75352333 None:intergenic 5.0%
!! TAAAATATATTTAGTTAATA+GGG + chr3_1:75352870-75352889 Msa0375570:intron 5.0%
!! GGCTTCTGGAGTTTCCTTGT+TGG + chr3_1:75352548-75352567 Msa0375570:CDS 50.0%
CACTCCTGGAAAACCCAACA+AGG - chr3_1:75352565-75352584 None:intergenic 50.0%
! GGGTTTTCCAGGAGTGAGTT+TGG + chr3_1:75352569-75352588 Msa0375570:CDS 50.0%
CTTCTAGCAGGGAGAATTCC+TGG + chr3_1:75352609-75352628 Msa0375570:CDS 50.0%
CTGTCTGAGCCAGATGAACA+AGG + chr3_1:75352633-75352652 Msa0375570:CDS 50.0%
GAGAGTTGGCATAGAAGGCT+TGG - chr3_1:75353609-75353628 None:intergenic 50.0%
CAAGGTGACAGGAACAGTTC+TGG - chr3_1:75353703-75353722 None:intergenic 50.0%
GATATGTCCTCCAACCTGTC+TGG - chr3_1:75353980-75353999 None:intergenic 50.0%
AGGCCAGATGAGAAATCAGG+AGG + chr3_1:75354002-75354021 Msa0375570:CDS 50.0%
AAATCAGGAGGACACGGTGT+TGG + chr3_1:75354014-75354033 Msa0375570:CDS 50.0%
AGTGCCTCAAGAATGGGAAG+AGG + chr3_1:75354067-75354086 Msa0375570:CDS 50.0%
! GCACTGATCACTTTGTCTGG+AGG - chr3_1:75354580-75354599 None:intergenic 50.0%
GGCAACCGCCTATACTTGTT+TGG + chr3_1:75354733-75354752 Msa0375570:CDS 50.0%
GCATCTCGTGAGTACTTAGC+AGG - chr3_1:75355187-75355206 None:intergenic 50.0%
TCCAGGAGTGAGTTTGGCTG+TGG + chr3_1:75352575-75352594 Msa0375570:CDS 55.0%
ACCACAGCCAAACTCACTCC+TGG - chr3_1:75352579-75352598 None:intergenic 55.0%
! TCATCTGGCTCAGACAGACC+AGG - chr3_1:75352630-75352649 None:intergenic 55.0%
! GGTTACCTAACAGGGTGCCT+TGG + chr3_1:75352768-75352787 Msa0375570:intron 55.0%
! CAATGCCAAGGCACCCTGTT+AGG - chr3_1:75352776-75352795 None:intergenic 55.0%
! CAGGTTGGAGGACATATCGC+AGG + chr3_1:75353982-75354001 Msa0375570:intron 55.0%
CGCAGGCCAGATGAGAAATC+AGG + chr3_1:75353999-75354018 Msa0375570:CDS 55.0%
CTCTCGGCTAAAAAGGGAGG+AGG - chr3_1:75354193-75354212 None:intergenic 55.0%
CAGACGTCCTTCCTTAGAGC+TGG - chr3_1:75354391-75354410 None:intergenic 55.0%
! CAGGAGGACACGGTGTTGGA+TGG + chr3_1:75354018-75354037 Msa0375570:CDS 60.0%
TTCATTACGGCCACCGCTGC+TGG + chr3_1:75354712-75354731 Msa0375570:CDS 60.0%
GTATAGGCGGTTGCCAGCAG+CGG - chr3_1:75354728-75354747 None:intergenic 60.0%
TAGGCGGTTGCCAGCAGCGG+TGG - chr3_1:75354725-75354744 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr3_1 gene 75352201 75355216 75352201 ID=Msa0375570;Name=Msa0375570
chr3_1 mRNA 75352201 75355216 75352201 ID=Msa0375570-mRNA-1;Parent=Msa0375570;Name=Msa0375570-mRNA-1;_AED=0.10;_eAED=0.10;_QI=156|1|1|1|1|1|5|272|268
chr3_1 exon 75352201 75352654 75352201 ID=Msa0375570-mRNA-1:exon:17612;Parent=Msa0375570-mRNA-1
chr3_1 exon 75353985 75354088 75353985 ID=Msa0375570-mRNA-1:exon:17613;Parent=Msa0375570-mRNA-1
chr3_1 exon 75354336 75354447 75354336 ID=Msa0375570-mRNA-1:exon:17614;Parent=Msa0375570-mRNA-1
chr3_1 exon 75354542 75354769 75354542 ID=Msa0375570-mRNA-1:exon:17615;Parent=Msa0375570-mRNA-1
chr3_1 exon 75354880 75355216 75354880 ID=Msa0375570-mRNA-1:exon:17616;Parent=Msa0375570-mRNA-1
chr3_1 five_prime_UTR 75352201 75352356 75352201 ID=Msa0375570-mRNA-1:five_prime_utr;Parent=Msa0375570-mRNA-1
chr3_1 CDS 75352357 75352654 75352357 ID=Msa0375570-mRNA-1:cds;Parent=Msa0375570-mRNA-1
chr3_1 CDS 75353985 75354088 75353985 ID=Msa0375570-mRNA-1:cds;Parent=Msa0375570-mRNA-1
chr3_1 CDS 75354336 75354447 75354336 ID=Msa0375570-mRNA-1:cds;Parent=Msa0375570-mRNA-1
chr3_1 CDS 75354542 75354769 75354542 ID=Msa0375570-mRNA-1:cds;Parent=Msa0375570-mRNA-1
chr3_1 CDS 75354880 75354944 75354880 ID=Msa0375570-mRNA-1:cds;Parent=Msa0375570-mRNA-1
chr3_1 three_prime_UTR 75354945 75355216 75354945 ID=Msa0375570-mRNA-1:three_prime_utr;Parent=Msa0375570-mRNA-1
Gene Sequence

>Msa0375570

ATGGCAACATCCTTGTCCACAACAACTCTACTTTCCTATAGAAGAAACCCACAACACATGTATATCCAACCCTGTTCAGTTAAAAATGAAGTTTCAAGAACTGTGCATGCTTCAGTCTCAAAGGACAGTTTATCAATCAATGAAGAGAGTGATAAATGTTCATCTTTGTTGGTGAACAGAAGAGCAGTTTTGGCTTCTGGAGTTTCCTTGTTGGGTTTTCCAGGAGTGAGTTTGGCTGTGGTTAAACAAGGTCTTCTAGCAGGGAGAATTCCTGGTCTGTCTGAGCCAGATGAACAAGGTTGGAGGACATATCGCAGGCCAGATGAGAAATCAGGAGGACACGGTGTTGGATGGAGTCCTATTATTCCATACACCTTTAAAGTGCCTCAAGAATGGGAAGAGGTACCTGTATCAATAGCAGATCTTGGTGGAACAGAGTTAGATTTGAGATTTTCCAGCTCTAAGGAAGGACGTCTGTTTGTCATTGTTGCTCCTGTTCTTAGATTCTCCGATGTTATTGGTGATGATGCTACAATAGAAAAAATTGGACCTCCAGACAAAGTGATCAGTGCATTTGGTCCTGAAATGATTGGAGAAAATGTGGAAGGGAAGGTTCTTAGTTCAAATGTTGCAGAACATGAAGGGAGAACTTACTATCAGTTTGAGCTGGAGCCTCCTCATATTTTCATTACGGCCACCGCTGCTGGCAACCGCCTATACTTGTTTGGTGTAACCGGTAATGGCCTTCAGTGGAAGAGACACTACAATGATTTGAAGAAGATATCCGACTCTTTTCGAGTTGTATAA

Protein sequence

>Msa0375570

MATSLSTTTLLSYRRNPQHMYIQPCSVKNEVSRTVHASVSKDSLSINEESDKCSSLLVNRRAVLASGVSLLGFPGVSLAVVKQGLLAGRIPGLSEPDEQGWRTYRRPDEKSGGHGVGWSPIIPYTFKVPQEWEEVPVSIADLGGTELDLRFSSSKEGRLFVIVAPVLRFSDVIGDDATIEKIGPPDKVISAFGPEMIGENVEGKVLSSNVAEHEGRTYYQFELEPPHIFITATAAGNRLYLFGVTGNGLQWKRHYNDLKKISDSFRVV*