AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0157030


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0157030 MtrunA17_Chr1g0168611 91.216 296 24 1 1 294 1 296 1.32e-178 494
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0157030 AT3G04310.1 35.714 182 100 4 121 294 96 268 1.20e-24 100
Msa0157030 AT3G04310.2 35.714 182 100 4 121 294 96 268 1.20e-24 100
Msa0157030 AT2G33250.1 37.968 187 102 4 111 294 123 298 3.91e-18 83.2

Find 100 sgRNAs with CRISPR-Local

Find 377 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CACTGGCAATTGAGAAATTA+TGG 0.159956 1_4:+23883359 Msa0157030:CDS
TTTACATCTTCCTTGTATTA+AGG 0.252106 1_4:+23883971 Msa0157030:three_prime_UTR
GAATTTACTTATAGAGAGTA+TGG 0.268631 1_4:-23883941 None:intergenic
AAATTTATGTTCATCAATAA+TGG 0.290271 1_4:+23884029 Msa0157030:three_prime_UTR
TTCTTCTAGAGGCTTGGTTC+TGG 0.332764 1_4:-23879426 None:intergenic
AGCCGAGATGCACCAAGTTT+TGG 0.334550 1_4:+23883550 Msa0157030:CDS
GCTTGTGATCTCCTTGTTGT+TGG 0.339884 1_4:-23883601 None:intergenic
TTCATCTTCTTCTAGAGGCT+TGG 0.368274 1_4:-23879432 None:intergenic
ATGAGAGTGTATGTGATAGA+TGG 0.384204 1_4:+23879193 Msa0157030:exon
CCAACGTGGGAAGTTGTTAG+AGG 0.384834 1_4:-23879354 None:intergenic
AAGATGCTTTAGATAGTTTG+TGG 0.386370 1_4:+23879549 Msa0157030:CDS
TGCCAAGGCACCACATTCCT+TGG 0.405299 1_4:+23879239 Msa0157030:CDS
GCATTGTTGAAGTTGAAGTT+TGG 0.406110 1_4:-23879404 None:intergenic
TTCATCCTATACTTGCGCTT+TGG 0.407380 1_4:-23883400 None:intergenic
TGTGTACCTGTCATTGTTGC+AGG 0.409672 1_4:+23883916 Msa0157030:three_prime_UTR
ACTGAAGAAGAAGGAAATAG+TGG 0.413376 1_4:+23879518 Msa0157030:CDS
TGAGGAGAATAGAGAGGTTG+AGG 0.416126 1_4:-23879278 None:intergenic
CCCGTGTGTCATTTACATTT+CGG 0.416520 1_4:-23883432 None:intergenic
AATGCCATGAGGAAAGCTTT+TGG 0.417045 1_4:-23883307 None:intergenic
AGGGTCACAAAGGATGAATA+TGG 0.435338 1_4:+23883630 Msa0157030:CDS
ATATAATCACATGATGTTGT+AGG 0.443027 1_4:+23883880 Msa0157030:three_prime_UTR
ATCTTGTTCAATCACATGTT+GGG 0.443756 1_4:-23883996 None:intergenic
CTTGCGCTTTGGTTTGCTCT+CGG 0.443826 1_4:-23883389 None:intergenic
ACTGGCAATTGAGAAATTAT+GGG 0.445083 1_4:+23883360 Msa0157030:CDS
CAACCATGATGCAAGGATGA+TGG 0.466104 1_4:-23883272 None:intergenic
AAAACTAATACGAGGAAGGC+GGG 0.468188 1_4:+23883481 Msa0157030:CDS
GCAAACCAAAGCGCAAGTAT+AGG 0.470582 1_4:+23883395 Msa0157030:CDS
TGGAAAGTGGTAGGTTGAGT+AGG 0.473865 1_4:+23883650 Msa0157030:CDS
GAGGTTGAGGTGGTCGAGAG+AGG 0.475700 1_4:-23879265 None:intergenic
GCATCATGGTTGCTTTCTAC+CGG 0.476024 1_4:+23883283 Msa0157030:CDS
TGTAAATGACACACGGGTTG+AGG 0.476945 1_4:+23883438 Msa0157030:CDS
GGAAGGCGGGGATGCAGTCG+TGG 0.477673 1_4:+23883494 Msa0157030:CDS
CATCTTGTTCAATCACATGT+TGG 0.484386 1_4:-23883997 None:intergenic
GCTGTAAAAGTTTCCTCCAT+AGG 0.486015 1_4:+23883753 Msa0157030:exon
TCATCCCATCCACCAAAACT+TGG 0.498543 1_4:-23883562 None:intergenic
GCTATACATTGTATCTATTG+TGG 0.500396 1_4:-23883857 None:intergenic
AACCAAGGAATGTGGTGCCT+TGG 0.501554 1_4:-23879241 None:intergenic
TCATCTTCATCTTCTTCTAG+AGG 0.501720 1_4:-23879437 None:intergenic
CACCAAAACTTGGTGCATCT+CGG 0.507741 1_4:-23883552 None:intergenic
GAACTTGAGCTTTGATGTGT+TGG 0.513641 1_4:+23883776 Msa0157030:three_prime_UTR
AGATAGTTTGTGGATTCTCA+AGG 0.515626 1_4:+23879559 Msa0157030:CDS
CAGTCAGTCAGCACTTGCAC+TGG 0.515720 1_4:+23883342 Msa0157030:CDS
TTGTTGAAGTTGAAGTTTGG+AGG 0.515928 1_4:-23879401 None:intergenic
ATGGATCCTGCAACAATGAC+AGG 0.516394 1_4:-23883922 None:intergenic
GAAAAGGGTCGCCATGGATG+AGG 0.517568 1_4:-23879296 None:intergenic
CTGTAAAAGTTTCCTCCATA+GGG 0.518444 1_4:+23883754 Msa0157030:exon
ATCAAAGCTCAAGTTCCCTA+TGG 0.534478 1_4:-23883769 None:intergenic
GATGGGCAGCGTCCAACCAT+AGG 0.537867 1_4:-23883254 None:intergenic
AACAACGGTTCGGTTGATAG+TGG 0.539590 1_4:+23883526 Msa0157030:CDS
GGAGATCACAAGCAAGGAAA+GGG 0.542632 1_4:+23883611 Msa0157030:CDS
AACCATGATGCAAGGATGAT+GGG 0.544823 1_4:-23883271 None:intergenic
AGGTCGAAAAGTGTCATCAT+TGG 0.545495 1_4:-23879381 None:intergenic
CTCTCTATTCTCCTCATCCA+TGG 0.547693 1_4:+23879285 Msa0157030:CDS
ATGTGGTGCCTTGGCAGTAG+TGG 0.548978 1_4:-23879232 None:intergenic
AGGAGATCACAAGCAAGGAA+AGG 0.559152 1_4:+23883610 Msa0157030:CDS
AATAAGCAATCGAACCAAGA+GGG 0.559725 1_4:-23883695 None:intergenic
CAAAGGATGAATATGGAAAG+TGG 0.560093 1_4:+23883637 Msa0157030:CDS
ACAGAAGAAACTGAAGAAGA+AGG 0.561811 1_4:+23879509 Msa0157030:CDS
ATGAATATGTGAAGAAGAGA+AGG 0.569050 1_4:+23879468 Msa0157030:CDS
GGAGAATAGAGAGGTTGAGG+TGG 0.569721 1_4:-23879275 None:intergenic
TCTAGAAGAAGATGAAGATG+AGG 0.570426 1_4:+23879439 Msa0157030:CDS
TGCCCATCATCCTTGCATCA+TGG 0.572196 1_4:+23883269 Msa0157030:CDS
CCTCTAACAACTTCCCACGT+TGG 0.579914 1_4:+23879354 Msa0157030:CDS
GGTAGTTGAGAACAACGGTT+CGG 0.582840 1_4:+23883516 Msa0157030:CDS
AGCGCAAGTATAGGATGAAG+AGG 0.587300 1_4:+23883404 Msa0157030:CDS
GGGATGACTTGGAGAGAGCA+AGG 0.588570 1_4:+23883578 Msa0157030:CDS
GAAGGCGGGGATGCAGTCGT+GGG 0.589601 1_4:+23883495 Msa0157030:CDS
GGATGAATATGGAAAGTGGT+AGG 0.598330 1_4:+23883641 Msa0157030:CDS
ATGTGAAGAAGAGAAGGTGG+TGG 0.598363 1_4:+23879474 Msa0157030:CDS
TTTGTGGAAAAGGGTCGCCA+TGG 0.601359 1_4:-23879302 None:intergenic
CAACAAGGAGATCACAAGCA+AGG 0.612370 1_4:+23883605 Msa0157030:CDS
CGGCCCAAAAGCTTTCCTCA+TGG 0.614363 1_4:+23883303 Msa0157030:CDS
CAATTGAGAAATTATGGGGA+CGG 0.615205 1_4:+23883365 Msa0157030:CDS
CATCAACACCACTACTGCCA+AGG 0.619463 1_4:+23879224 Msa0157030:CDS
AGAGAGCAAGGCCAACAACA+AGG 0.623233 1_4:+23883590 Msa0157030:CDS
TAGAAAGCAACCATGATGCA+AGG 0.624556 1_4:-23883279 None:intergenic
CCAGAAAACTAATACGAGGA+AGG 0.626614 1_4:+23883477 Msa0157030:CDS
ATGTTGGGCACCTTAATACA+AGG 0.627997 1_4:-23883981 None:intergenic
AATATGTGAAGAAGAGAAGG+TGG 0.633005 1_4:+23879471 Msa0157030:CDS
GAAAACTAATACGAGGAAGG+CGG 0.634403 1_4:+23883480 Msa0157030:CDS
AAAGCTCAAGTTCCCTATGG+AGG 0.634915 1_4:-23883766 None:intergenic
AAACTAATACGAGGAAGGCG+GGG 0.635407 1_4:+23883482 Msa0157030:CDS
GCCGAAATGTAAATGACACA+CGG 0.641802 1_4:+23883431 Msa0157030:CDS
AAGCAAGGAAAGGGTCACAA+AGG 0.643486 1_4:+23883620 Msa0157030:CDS
ATAAGCAATCGAACCAAGAG+GGG 0.649272 1_4:-23883694 None:intergenic
CCGAAATGTAAATGACACAC+GGG 0.650247 1_4:+23883432 Msa0157030:CDS
CTGGCAATTGAGAAATTATG+GGG 0.651354 1_4:+23883361 Msa0157030:CDS
AGAGAGGTAACCAAGGAATG+TGG 0.655164 1_4:-23879249 None:intergenic
GCAAGTGCTGACTGACTGAG+AGG 0.659866 1_4:-23883337 None:intergenic
GATACGCGAGAATGAGACAT+GGG 0.670752 1_4:-23879326 None:intergenic
CATGGATGAGGAGAATAGAG+AGG 0.676726 1_4:-23879284 None:intergenic
CAAGTGCTGACTGACTGAGA+GGG 0.679661 1_4:-23883336 None:intergenic
CAATAAGCAATCGAACCAAG+AGG 0.681035 1_4:-23883696 None:intergenic
AGATACGCGAGAATGAGACA+TGG 0.683428 1_4:-23879327 None:intergenic
CATCATTGGAATTCCAACGT+GGG 0.700259 1_4:-23879367 None:intergenic
GTGGTCGAGAGAGGTAACCA+AGG 0.710761 1_4:-23879256 None:intergenic
GAGGGATTGCTAATGCCATG+AGG 0.724452 1_4:-23883318 None:intergenic
TCATCATTGGAATTCCAACG+TGG 0.727073 1_4:-23879368 None:intergenic
AAACCCAGAAAACTAATACG+AGG 0.734217 1_4:+23883473 Msa0157030:CDS
TCGTGGGTAGTTGAGAACAA+CGG 0.734928 1_4:+23883511 Msa0157030:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! GTATATTCAAACATAAAAAA+AGG - chr1_4:23880173-23880192 None:intergenic 15.0%
!! ATTAGTAGAAAAATAATGTT+AGG - chr1_4:23881312-23881331 None:intergenic 15.0%
!! AATTAAGTGTTAATATTCTA+AGG + chr1_4:23881367-23881386 Msa0157030:intron 15.0%
!! AATATAGTGATGATATTATT+TGG + chr1_4:23881421-23881440 Msa0157030:intron 15.0%
!!! TTCATTTTCTCAAATTATAT+TGG + chr1_4:23882994-23883013 Msa0157030:intron 15.0%
!! AAATTTATGTTCATCAATAA+TGG + chr1_4:23884029-23884048 Msa0157030:three_prime_UTR 15.0%
!! ATCTTCCACATAAAAATAAA+TGG - chr1_4:23879637-23879656 None:intergenic 20.0%
!!! AAAAAGTTCTTTAGGAAAAT+TGG + chr1_4:23879661-23879680 Msa0157030:intron 20.0%
!!! TAAATAAGCTGTGTTTTTTA+TGG + chr1_4:23879982-23880001 Msa0157030:intron 20.0%
!! AGATATAATCAAAGAGAAAA+TGG - chr1_4:23880365-23880384 None:intergenic 20.0%
!! ACTTATAACAATAAGCTATT+TGG + chr1_4:23880430-23880449 Msa0157030:intron 20.0%
!! AAAGAAACTAGTATTCAAAA+GGG - chr1_4:23880786-23880805 None:intergenic 20.0%
!! AATCCAAAATTTCAGTTATA+TGG - chr1_4:23880909-23880928 None:intergenic 20.0%
!!! ATATAACTGAAATTTTGGAT+TGG + chr1_4:23880908-23880927 Msa0157030:intron 20.0%
!!! GTTTGTTAAAGATTTATACA+AGG + chr1_4:23881022-23881041 Msa0157030:intron 20.0%
!! ATAGAAGATAGTTAATTAGT+TGG - chr1_4:23881250-23881269 None:intergenic 20.0%
!! GAAAAATAATGTTAGGATAT+AGG - chr1_4:23881305-23881324 None:intergenic 20.0%
!! AATATTACATGAATAGATGT+GGG - chr1_4:23881518-23881537 None:intergenic 20.0%
!! AAATATTACATGAATAGATG+TGG - chr1_4:23881519-23881538 None:intergenic 20.0%
!! AATATTACATGAATAGATGT+GGG - chr1_4:23881518-23881537 None:intergenic 20.0%
!! AAATATTACATGAATAGATG+TGG - chr1_4:23881519-23881538 None:intergenic 20.0%
!! TTAGTATATATGGTAAATTC+TGG + chr1_4:23882035-23882054 Msa0157030:intron 20.0%
!! GTATTATGAAAAGAGAAAAA+TGG + chr1_4:23882300-23882319 Msa0157030:intron 20.0%
!! CAATGATTATTAGTATGATA+TGG - chr1_4:23882558-23882577 None:intergenic 20.0%
!!! ATATGCATATTTTGAGATAA+TGG - chr1_4:23882721-23882740 None:intergenic 20.0%
!! TAATGAGAGAATACAAATAA+AGG - chr1_4:23882769-23882788 None:intergenic 20.0%
!!! TATTGCTATTTTTCCATTTT+TGG + chr1_4:23883714-23883733 Msa0157030:CDS 20.0%
!!! ATTGCTATTTTTCCATTTTT+GGG + chr1_4:23883715-23883734 Msa0157030:CDS 20.0%
!!! TGATGCCATTTATTTTTATG+TGG + chr1_4:23879629-23879648 Msa0157030:intron 25.0%
! AGATGTGAAAAAAGTTCTTT+AGG + chr1_4:23879653-23879672 Msa0157030:intron 25.0%
!!! TTGTTTTGTATTAGTGCTTT+TGG + chr1_4:23879698-23879717 Msa0157030:intron 25.0%
!! TTTAGAGTGGTTTATTTAGA+TGG + chr1_4:23879721-23879740 Msa0157030:intron 25.0%
! TATCAAACTAAGCTGAAAAT+AGG + chr1_4:23879897-23879916 Msa0157030:intron 25.0%
! CAAATAAGTCAATCAAAACA+TGG + chr1_4:23880147-23880166 Msa0157030:intron 25.0%
! ATAATCAAAGAGAAAATGGA+GGG - chr1_4:23880361-23880380 None:intergenic 25.0%
! TATAATCAAAGAGAAAATGG+AGG - chr1_4:23880362-23880381 None:intergenic 25.0%
! TATAATCGAAAGAGAAAATG+AGG + chr1_4:23880384-23880403 Msa0157030:intron 25.0%
! ATTTCATTATGCTATAACGA+TGG - chr1_4:23880551-23880570 None:intergenic 25.0%
! GAAAGAAACTAGTATTCAAA+AGG - chr1_4:23880787-23880806 None:intergenic 25.0%
!! AATACTAGTTTCTTTCACTT+TGG + chr1_4:23880791-23880810 Msa0157030:intron 25.0%
!! ACACCATATAACTGAAATTT+TGG + chr1_4:23880903-23880922 Msa0157030:intron 25.0%
!! TCAATAAGACATTTAGGTTA+AGG - chr1_4:23880994-23881013 None:intergenic 25.0%
! TATGGTTCAATAAGACATTT+AGG - chr1_4:23881000-23881019 None:intergenic 25.0%
! TAAATCTTTAACAAACGCTA+TGG - chr1_4:23881018-23881037 None:intergenic 25.0%
!!! TATACAAGGTATCTTTTGTT+AGG + chr1_4:23881036-23881055 Msa0157030:intron 25.0%
! AGTAGTAACTTTATTGTGAA+GGG - chr1_4:23881142-23881161 None:intergenic 25.0%
! ATAGGGCTATTTGTAAATAT+AGG - chr1_4:23881216-23881235 None:intergenic 25.0%
! AATGTTAGGATATAGGATAA+TGG - chr1_4:23881298-23881317 None:intergenic 25.0%
! CTAATGCAAGTGAATAATAA+AGG + chr1_4:23881327-23881346 Msa0157030:intron 25.0%
! ATATTACATGAATAGATGTG+GGG - chr1_4:23881517-23881536 None:intergenic 25.0%
! ATATTACATGAATAGATGTG+GGG - chr1_4:23881517-23881536 None:intergenic 25.0%
!! GTTCTTTGTTATATCTAGAA+AGG + chr1_4:23881852-23881871 Msa0157030:intron 25.0%
! TAAAACTCAAAGCTCTTATA+TGG - chr1_4:23882018-23882037 None:intergenic 25.0%
!!! GCTTTGAGTTTTAGTATATA+TGG + chr1_4:23882025-23882044 Msa0157030:intron 25.0%
! GGATATATTACAGAATAAGT+TGG - chr1_4:23882061-23882080 None:intergenic 25.0%
! TATGAAAAGAGAAAAATGGT+TGG + chr1_4:23882304-23882323 Msa0157030:intron 25.0%
! ATGAAAAGAGAAAAATGGTT+GGG + chr1_4:23882305-23882324 Msa0157030:intron 25.0%
!!! AATCAGTGATGATTTGTTAA+TGG + chr1_4:23882415-23882434 Msa0157030:intron 25.0%
! GAATTCTAATGAAAAATGGT+TGG - chr1_4:23882443-23882462 None:intergenic 25.0%
! CCAAGAATTCTAATGAAAAA+TGG - chr1_4:23882447-23882466 None:intergenic 25.0%
!!! CCATTTTTCATTAGAATTCT+TGG + chr1_4:23882444-23882463 Msa0157030:intron 25.0%
! TCATTAGAATTCTTGGAAAA+TGG + chr1_4:23882451-23882470 Msa0157030:intron 25.0%
! AATACAAATAAAGGAAACTG+AGG - chr1_4:23882760-23882779 None:intergenic 25.0%
!!! TCAAATTATATTGGTGTTGA+TGG + chr1_4:23883003-23883022 Msa0157030:intron 25.0%
!!! CAAATTATATTGGTGTTGAT+GGG + chr1_4:23883004-23883023 Msa0157030:intron 25.0%
! ATATAATCACATGATGTTGT+AGG + chr1_4:23883880-23883899 Msa0157030:three_prime_UTR 25.0%
! GAATTTACTTATAGAGAGTA+TGG - chr1_4:23883944-23883963 None:intergenic 25.0%
! CAAGGAAGATGTAAAAAAAT+TGG - chr1_4:23883966-23883985 None:intergenic 25.0%
! TTTACATCTTCCTTGTATTA+AGG + chr1_4:23883971-23883990 Msa0157030:three_prime_UTR 25.0%
ATGAATATGTGAAGAAGAGA+AGG + chr1_4:23879468-23879487 Msa0157030:CDS 30.0%
! AAGATGCTTTAGATAGTTTG+TGG + chr1_4:23879549-23879568 Msa0157030:CDS 30.0%
ACTAAGCTGAAAATAGGTTA+TGG + chr1_4:23879903-23879922 Msa0157030:intron 30.0%
!!! ATAAGCTGTGTTTTTTATGG+CGG + chr1_4:23879985-23880004 Msa0157030:intron 30.0%
! ATATGCTGCCATTTAACAAA+CGG + chr1_4:23880124-23880143 Msa0157030:intron 30.0%
! CTTATTTGCCGTTTGTTAAA+TGG - chr1_4:23880135-23880154 None:intergenic 30.0%
! AAATGATAGTGTGCTAAAGT+GGG + chr1_4:23880233-23880252 Msa0157030:intron 30.0%
AAAATGAGGATAAACTGCAT+AGG + chr1_4:23880398-23880417 Msa0157030:intron 30.0%
ATTGTATGAAATCGCTTACA+GGG - chr1_4:23880594-23880613 None:intergenic 30.0%
AATTGTATGAAATCGCTTAC+AGG - chr1_4:23880595-23880614 None:intergenic 30.0%
AACTCAATAAACTTCACCTT+GGG - chr1_4:23880695-23880714 None:intergenic 30.0%
TAGTTTACAAACCAGTGAAA+GGG - chr1_4:23880719-23880738 None:intergenic 30.0%
CTGTTGAAATACATCATACA+TGG + chr1_4:23880849-23880868 Msa0157030:intron 30.0%
AATACATCATACATGGAAGT+TGG + chr1_4:23880856-23880875 Msa0157030:intron 30.0%
!! ACTGAAATTTTGGATTGGAA+TGG + chr1_4:23880913-23880932 Msa0157030:intron 30.0%
TTCTTTCGAATCCAATTCTT+GGG - chr1_4:23881064-23881083 None:intergenic 30.0%
TTTCTTTCGAATCCAATTCT+TGG - chr1_4:23881065-23881084 None:intergenic 30.0%
AGAAAGAACACTTAAGAGAT+AGG + chr1_4:23881080-23881099 Msa0157030:intron 30.0%
CTTAAGAGATAGGAAAGAAT+AGG + chr1_4:23881090-23881109 Msa0157030:intron 30.0%
GTAGTAACTTTATTGTGAAG+GGG - chr1_4:23881141-23881160 None:intergenic 30.0%
GAGTAGTAACTTTATTGTGA+AGG - chr1_4:23881143-23881162 None:intergenic 30.0%
AGTTGGTTGAGATTGTAATA+GGG - chr1_4:23881233-23881252 None:intergenic 30.0%
TAGTTGGTTGAGATTGTAAT+AGG - chr1_4:23881234-23881253 None:intergenic 30.0%
ATGCAAGTGAATAATAAAGG+AGG + chr1_4:23881330-23881349 Msa0157030:intron 30.0%
CTGTCTAATTATGAGCAAAA+TGG + chr1_4:23881593-23881612 Msa0157030:intron 30.0%
AAAAAATCGGAAGACAAGTT+TGG + chr1_4:23881621-23881640 Msa0157030:intron 30.0%
CTGTCTAATTATGAGCAAAA+TGG + chr1_4:23881593-23881612 Msa0157030:intron 30.0%
!!! GAAGACAACTGATTTTAACT+CGG + chr1_4:23881830-23881849 Msa0157030:intron 30.0%
TTTGCTTACAGAATTCAGTT+TGG + chr1_4:23881967-23881986 Msa0157030:intron 30.0%
TGTAATATATCCTGATCACT+TGG + chr1_4:23882069-23882088 Msa0157030:intron 30.0%
GAAATGAAACCTTGAAGTTA+AGG + chr1_4:23882114-23882133 Msa0157030:intron 30.0%
CTTGAAGTTAAGGTATGTTT+GGG + chr1_4:23882124-23882143 Msa0157030:intron 30.0%
TTAAGGTATGTTTGGGAATT+AGG + chr1_4:23882131-23882150 Msa0157030:intron 30.0%
! CACTTGTTTGTAAAAGGTAT+CGG - chr1_4:23882362-23882381 None:intergenic 30.0%
! ATACCTTTTACAAACAAGTG+TGG + chr1_4:23882362-23882381 Msa0157030:intron 30.0%
! TACCTTTTACAAACAAGTGT+GGG + chr1_4:23882363-23882382 Msa0157030:intron 30.0%
!!! CTCTGTTACTGTTATTTTAC+AGG + chr1_4:23882509-23882528 Msa0157030:intron 30.0%
GTTTCTAAATCTCTCAAAGA+TGG + chr1_4:23882683-23882702 Msa0157030:intron 30.0%
! AAATCTCTCAAAGATGGTTT+TGG + chr1_4:23882689-23882708 Msa0157030:intron 30.0%
TGAAAAATATGAACTACCGA+AGG - chr1_4:23882926-23882945 None:intergenic 30.0%
! TGAAGTACTAACACAAACAT+TGG - chr1_4:23883061-23883080 None:intergenic 30.0%
TGTTTGTGTTAGTACTTCAT+AGG + chr1_4:23883062-23883081 Msa0157030:intron 30.0%
! TGTGCATTGAACATTTTTGT+TGG + chr1_4:23883189-23883208 Msa0157030:intron 30.0%
! AGGTTTTTAAATCCTATGGT+TGG + chr1_4:23883242-23883261 Msa0157030:intron 30.0%
ACTGGCAATTGAGAAATTAT+GGG + chr1_4:23883360-23883379 Msa0157030:CDS 30.0%
GCTATACATTGTATCTATTG+TGG - chr1_4:23883860-23883879 None:intergenic 30.0%
ATCTTGTTCAATCACATGTT+GGG - chr1_4:23883999-23884018 None:intergenic 30.0%
! ATGAGAGTGTATGTGATAGA+TGG + chr1_4:23879193-23879212 Msa0157030:exon 35.0%
TTGTTGAAGTTGAAGTTTGG+AGG - chr1_4:23879404-23879423 None:intergenic 35.0%
GCATTGTTGAAGTTGAAGTT+TGG - chr1_4:23879407-23879426 None:intergenic 35.0%
TCATCTTCATCTTCTTCTAG+AGG - chr1_4:23879440-23879459 None:intergenic 35.0%
TCTAGAAGAAGATGAAGATG+AGG + chr1_4:23879439-23879458 Msa0157030:CDS 35.0%
AATATGTGAAGAAGAGAAGG+TGG + chr1_4:23879471-23879490 Msa0157030:CDS 35.0%
ACAGAAGAAACTGAAGAAGA+AGG + chr1_4:23879509-23879528 Msa0157030:CDS 35.0%
ACTGAAGAAGAAGGAAATAG+TGG + chr1_4:23879518-23879537 Msa0157030:CDS 35.0%
! AGATAGTTTGTGGATTCTCA+AGG + chr1_4:23879559-23879578 Msa0157030:CDS 35.0%
!!! TTAGTGCTTTTGGTTTAGAG+TGG + chr1_4:23879708-23879727 Msa0157030:intron 35.0%
! GCAAAGGCGTGTTTATATAA+CGG - chr1_4:23880023-23880042 None:intergenic 35.0%
AATCCTTCACGAATTGCTTA+TGG + chr1_4:23880068-23880087 Msa0157030:intron 35.0%
TTAGCACACTATCATTTCAG+AGG - chr1_4:23880230-23880249 None:intergenic 35.0%
! GAAATGATAGTGTGCTAAAG+TGG + chr1_4:23880232-23880251 Msa0157030:intron 35.0%
!! TACAGAGTGTTGTCTAATAC+CGG + chr1_4:23880618-23880637 Msa0157030:intron 35.0%
GAACTCAATAAACTTCACCT+TGG - chr1_4:23880696-23880715 None:intergenic 35.0%
AGTTTACAAACCAGTGAAAG+GGG - chr1_4:23880718-23880737 None:intergenic 35.0%
CTAGTTTACAAACCAGTGAA+AGG - chr1_4:23880720-23880739 None:intergenic 35.0%
! GCTGGCTTACTAGAAAATAT+TGG - chr1_4:23880830-23880849 None:intergenic 35.0%
GTATGATGTATTTCAACAGC+TGG - chr1_4:23880848-23880867 None:intergenic 35.0%
!! AAATTTTGGATTGGAATGGC+TGG + chr1_4:23880917-23880936 Msa0157030:intron 35.0%
!! AATTTTGGATTGGAATGGCT+GGG + chr1_4:23880918-23880937 Msa0157030:intron 35.0%
TTTGTTAGGAACCCAAGAAT+TGG + chr1_4:23881050-23881069 Msa0157030:intron 35.0%
AAACCTGAAACCAATGGAAT+GGG + chr1_4:23881459-23881478 Msa0157030:intron 35.0%
CTTGTCTATTAAGCTGTAGA+AGG - chr1_4:23881550-23881569 None:intergenic 35.0%
CAAAATGGTGCGCAAAAAAT+CGG + chr1_4:23881608-23881627 Msa0157030:intron 35.0%
AAACCTGAAACCAATGGAAT+GGG + chr1_4:23881459-23881478 Msa0157030:intron 35.0%
CTTGTCTATTAAGCTGTAGA+AGG - chr1_4:23881550-23881569 None:intergenic 35.0%
CAAAATGGTGCGCAAAAAAT+CGG + chr1_4:23881608-23881627 Msa0157030:intron 35.0%
! AATCTAAGATGATGCTGTCT+AGG - chr1_4:23881897-23881916 None:intergenic 35.0%
GACAGCATCATCTTAGATTA+TGG + chr1_4:23881898-23881917 Msa0157030:intron 35.0%
! TCTGAGACAAACTTCAGATT+AGG - chr1_4:23881939-23881958 None:intergenic 35.0%
GTGACCATTCTCAAATTTCA+AGG + chr1_4:23881989-23882008 Msa0157030:intron 35.0%
ACCATTCTCAAATTTCAAGG+AGG + chr1_4:23881992-23882011 Msa0157030:intron 35.0%
CCAAACATACCTTAACTTCA+AGG - chr1_4:23882126-23882145 None:intergenic 35.0%
CCTTGAAGTTAAGGTATGTT+TGG + chr1_4:23882123-23882142 Msa0157030:intron 35.0%
!! GGTATTTTCTCACCTTGTTT+GGG + chr1_4:23882206-23882225 Msa0157030:intron 35.0%
! TTTGGGAGAGACCTTTTAAA+GGG + chr1_4:23882223-23882242 Msa0157030:intron 35.0%
GAAAAATGGTTGGGAGAATT+TGG + chr1_4:23882314-23882333 Msa0157030:intron 35.0%
!! TGTTTGTAAAAGGTATCGGA+GGG - chr1_4:23882358-23882377 None:intergenic 35.0%
!! TTGTTTGTAAAAGGTATCGG+AGG - chr1_4:23882359-23882378 None:intergenic 35.0%
TACCCACACTTGTTTGTAAA+AGG - chr1_4:23882368-23882387 None:intergenic 35.0%
ATGAAGGACTCAAGATTCAA+TGG - chr1_4:23882584-23882603 None:intergenic 35.0%
TCTCTCTACATACTCTATGA+AGG - chr1_4:23882600-23882619 None:intergenic 35.0%
TTCAGTATCCTTAACAATGC+TGG + chr1_4:23882822-23882841 Msa0157030:intron 35.0%
CTTTACAACCAGCATTGTTA+AGG - chr1_4:23882833-23882852 None:intergenic 35.0%
TTCCAGATAACTTCTTCCTT+CGG + chr1_4:23882907-23882926 Msa0157030:intron 35.0%
!! TTATATTGGTGTTGATGGGT+CGG + chr1_4:23883008-23883027 Msa0157030:intron 35.0%
ATAATTGCTGTGTTGCATTG+TGG + chr1_4:23883121-23883140 Msa0157030:intron 35.0%
! TGAACATTTTTGTTGGTGTG+AGG + chr1_4:23883196-23883215 Msa0157030:intron 35.0%
! GTGCAGGTTTTTAAATCCTA+TGG + chr1_4:23883238-23883257 Msa0157030:intron 35.0%
CACTGGCAATTGAGAAATTA+TGG + chr1_4:23883359-23883378 Msa0157030:CDS 35.0%
CTGGCAATTGAGAAATTATG+GGG + chr1_4:23883361-23883380 Msa0157030:CDS 35.0%
CAATTGAGAAATTATGGGGA+CGG + chr1_4:23883365-23883384 Msa0157030:CDS 35.0%
!! TTAGTTTTCTGGGTTTCTTC+TGG - chr1_4:23883469-23883488 None:intergenic 35.0%
AAACCCAGAAAACTAATACG+AGG + chr1_4:23883473-23883492 Msa0157030:CDS 35.0%
!!! CTTCCTCGTATTAGTTTTCT+GGG - chr1_4:23883479-23883498 None:intergenic 35.0%
CAAAGGATGAATATGGAAAG+TGG + chr1_4:23883637-23883656 Msa0157030:CDS 35.0%
AATAAGCAATCGAACCAAGA+GGG - chr1_4:23883698-23883717 None:intergenic 35.0%
!! TTTTTCCATTTTTGGGCACA+TGG + chr1_4:23883722-23883741 Msa0157030:CDS 35.0%
CTGTAAAAGTTTCCTCCATA+GGG + chr1_4:23883754-23883773 Msa0157030:exon 35.0%
CATCTTGTTCAATCACATGT+TGG - chr1_4:23884000-23884019 None:intergenic 35.0%
!! GACATGGGTTTTGTGGAAAA+GGG - chr1_4:23879314-23879333 None:intergenic 40.0%
!! AGACATGGGTTTTGTGGAAA+AGG - chr1_4:23879315-23879334 None:intergenic 40.0%
! AGAATGAGACATGGGTTTTG+TGG - chr1_4:23879321-23879340 None:intergenic 40.0%
CATCATTGGAATTCCAACGT+GGG - chr1_4:23879370-23879389 None:intergenic 40.0%
TCATCATTGGAATTCCAACG+TGG - chr1_4:23879371-23879390 None:intergenic 40.0%
!! AGGTCGAAAAGTGTCATCAT+TGG - chr1_4:23879384-23879403 None:intergenic 40.0%
! TTCATCTTCTTCTAGAGGCT+TGG - chr1_4:23879435-23879454 None:intergenic 40.0%
ATCCACTTGTGAGACTACTT+GGG - chr1_4:23879957-23879976 None:intergenic 40.0%
TATCCACTTGTGAGACTACT+TGG - chr1_4:23879958-23879977 None:intergenic 40.0%
AATGGCAGCATATAGCAGAA+TGG - chr1_4:23880117-23880136 None:intergenic 40.0%
TAGAGATGCTTGTTCGTGTT+TGG + chr1_4:23880267-23880286 Msa0157030:intron 40.0%
! TGCTATTTACACTACCCTGT+GGG - chr1_4:23880522-23880541 None:intergenic 40.0%
TTAGCACTGCTATAGATAGC+CGG - chr1_4:23880640-23880659 None:intergenic 40.0%
TTATTGAGTTCCCCTTTCAC+TGG + chr1_4:23880705-23880724 Msa0157030:intron 40.0%
!! ATTTTGGATTGGAATGGCTG+GGG + chr1_4:23880919-23880938 Msa0157030:intron 40.0%
ACTTCCAAACCTGAAACCAA+TGG + chr1_4:23881453-23881472 Msa0157030:intron 40.0%
!! CATTCCATTGGTTTCAGGTT+TGG - chr1_4:23881460-23881479 None:intergenic 40.0%
CAAACCTGAAACCAATGGAA+TGG + chr1_4:23881458-23881477 Msa0157030:intron 40.0%
AACCTGAAACCAATGGAATG+GGG + chr1_4:23881460-23881479 Msa0157030:intron 40.0%
ACTTCCAAACCTGAAACCAA+TGG + chr1_4:23881453-23881472 Msa0157030:intron 40.0%
!! CATTCCATTGGTTTCAGGTT+TGG - chr1_4:23881460-23881479 None:intergenic 40.0%
CAAACCTGAAACCAATGGAA+TGG + chr1_4:23881458-23881477 Msa0157030:intron 40.0%
AACCTGAAACCAATGGAATG+GGG + chr1_4:23881460-23881479 Msa0157030:intron 40.0%
GCCTCCTTGAAATTTGAGAA+TGG - chr1_4:23881996-23882015 None:intergenic 40.0%
AGGTATGTTTGGGAATTAGG+AGG + chr1_4:23882134-23882153 Msa0157030:intron 40.0%
GGTATGTTTGGGAATTAGGA+GGG + chr1_4:23882135-23882154 Msa0157030:intron 40.0%
GTATGTTTGGGAATTAGGAG+GGG + chr1_4:23882136-23882155 Msa0157030:intron 40.0%
! GGGTATTTTCTCACCTTGTT+TGG + chr1_4:23882205-23882224 Msa0157030:intron 40.0%
TAAAAGGTCTCTCCCAAACA+AGG - chr1_4:23882221-23882240 None:intergenic 40.0%
! GTTTGGGAGAGACCTTTTAA+AGG + chr1_4:23882222-23882241 Msa0157030:intron 40.0%
!! TTGGGAGAGACCTTTTAAAG+GGG + chr1_4:23882224-23882243 Msa0157030:intron 40.0%
!! GTTTGTAAAAGGTATCGGAG+GGG - chr1_4:23882357-23882376 None:intergenic 40.0%
AACTCAAAATGCTGAGACCA+GGG + chr1_4:23882474-23882493 Msa0157030:intron 40.0%
TAGAGTATGTAGAGAGAGAG+AGG + chr1_4:23882603-23882622 Msa0157030:intron 40.0%
AGAGTATGTAGAGAGAGAGA+GGG + chr1_4:23882604-23882623 Msa0157030:intron 40.0%
! TGCTGGTTGTAAAGTTTGTG+TGG + chr1_4:23882839-23882858 Msa0157030:intron 40.0%
GCTGGTTGTAAAGTTTGTGT+GGG + chr1_4:23882840-23882859 Msa0157030:intron 40.0%
TACCGAAGGAAGAAGTTATC+TGG - chr1_4:23882912-23882931 None:intergenic 40.0%
TATCTCTGTTGCGTCAATGT+CGG - chr1_4:23882953-23882972 None:intergenic 40.0%
! TGAATTCATTTTCGCAGTGC+AGG + chr1_4:23883222-23883241 Msa0157030:intron 40.0%
AACCATGATGCAAGGATGAT+GGG - chr1_4:23883274-23883293 None:intergenic 40.0%
TAGAAAGCAACCATGATGCA+AGG - chr1_4:23883282-23883301 None:intergenic 40.0%
! ATGCCATGAGGAAAGCTTTT+GGG - chr1_4:23883309-23883328 None:intergenic 40.0%
! AATGCCATGAGGAAAGCTTT+TGG - chr1_4:23883310-23883329 None:intergenic 40.0%
TTCATCCTATACTTGCGCTT+TGG - chr1_4:23883403-23883422 None:intergenic 40.0%
GCCGAAATGTAAATGACACA+CGG + chr1_4:23883431-23883450 Msa0157030:CDS 40.0%
!! CCCGTGTGTCATTTACATTT+CGG - chr1_4:23883435-23883454 None:intergenic 40.0%
CCGAAATGTAAATGACACAC+GGG + chr1_4:23883432-23883451 Msa0157030:CDS 40.0%
!!! CCTTCCTCGTATTAGTTTTC+TGG - chr1_4:23883480-23883499 None:intergenic 40.0%
CCAGAAAACTAATACGAGGA+AGG + chr1_4:23883477-23883496 Msa0157030:CDS 40.0%
GAAAACTAATACGAGGAAGG+CGG + chr1_4:23883480-23883499 Msa0157030:CDS 40.0%
AAAACTAATACGAGGAAGGC+GGG + chr1_4:23883481-23883500 Msa0157030:CDS 40.0%
AGGGTCACAAAGGATGAATA+TGG + chr1_4:23883630-23883649 Msa0157030:CDS 40.0%
GGATGAATATGGAAAGTGGT+AGG + chr1_4:23883641-23883660 Msa0157030:CDS 40.0%
ATAAGCAATCGAACCAAGAG+GGG - chr1_4:23883697-23883716 None:intergenic 40.0%
CAATAAGCAATCGAACCAAG+AGG - chr1_4:23883699-23883718 None:intergenic 40.0%
TTTGTCCATGTGCCCAAAAA+TGG - chr1_4:23883730-23883749 None:intergenic 40.0%
GCTGTAAAAGTTTCCTCCAT+AGG + chr1_4:23883753-23883772 Msa0157030:exon 40.0%
ATCAAAGCTCAAGTTCCCTA+TGG - chr1_4:23883772-23883791 None:intergenic 40.0%
! GAACTTGAGCTTTGATGTGT+TGG + chr1_4:23883776-23883795 Msa0157030:three_prime_UTR 40.0%
ATGTTGGGCACCTTAATACA+AGG - chr1_4:23883984-23884003 None:intergenic 40.0%
AGAGAGGTAACCAAGGAATG+TGG - chr1_4:23879252-23879271 None:intergenic 45.0%
TGAGGAGAATAGAGAGGTTG+AGG - chr1_4:23879281-23879300 None:intergenic 45.0%
CATGGATGAGGAGAATAGAG+AGG - chr1_4:23879287-23879306 None:intergenic 45.0%
CTCTCTATTCTCCTCATCCA+TGG + chr1_4:23879285-23879304 Msa0157030:CDS 45.0%
GATACGCGAGAATGAGACAT+GGG - chr1_4:23879329-23879348 None:intergenic 45.0%
AGATACGCGAGAATGAGACA+TGG - chr1_4:23879330-23879349 None:intergenic 45.0%
! TTCTTCTAGAGGCTTGGTTC+TGG - chr1_4:23879429-23879448 None:intergenic 45.0%
ATGTGAAGAAGAGAAGGTGG+TGG + chr1_4:23879474-23879493 Msa0157030:CDS 45.0%
!!! GCTGTGTTTTTTATGGCGGA+AGG + chr1_4:23879989-23880008 Msa0157030:intron 45.0%
CCACCATAAGCAATTCGTGA+AGG - chr1_4:23880074-23880093 None:intergenic 45.0%
CCTTCACGAATTGCTTATGG+TGG + chr1_4:23880071-23880090 Msa0157030:intron 45.0%
!!! AGAATGGCATGGCGGATTTT+TGG - chr1_4:23880101-23880120 None:intergenic 45.0%
CATATAGCAGAATGGCATGG+CGG - chr1_4:23880109-23880128 None:intergenic 45.0%
CAGCATATAGCAGAATGGCA+TGG - chr1_4:23880112-23880131 None:intergenic 45.0%
! TGATAGTGTGCTAAAGTGGG+AGG + chr1_4:23880236-23880255 Msa0157030:intron 45.0%
AAATAATCCCAAACGCCCAC+AGG + chr1_4:23880504-23880523 Msa0157030:intron 45.0%
AATAATCCCAAACGCCCACA+GGG + chr1_4:23880505-23880524 Msa0157030:intron 45.0%
! CTGCTATTTACACTACCCTG+TGG - chr1_4:23880523-23880542 None:intergenic 45.0%
TTGGGCAGCATTATCAGTAG+CGG - chr1_4:23880677-23880696 None:intergenic 45.0%
!! TTTTGGATTGGAATGGCTGG+GGG + chr1_4:23880920-23880939 Msa0157030:intron 45.0%
GAGAGAAATCTCTCCTCCAA+GGG + chr1_4:23881112-23881131 Msa0157030:intron 45.0%
TATTGTGAAGGGGAAACCCT+TGG - chr1_4:23881131-23881150 None:intergenic 45.0%
!! TTCCCCATTCCATTGGTTTC+AGG - chr1_4:23881465-23881484 None:intergenic 45.0%
CTAAGCATTCCCCATTCCAT+TGG - chr1_4:23881472-23881491 None:intergenic 45.0%
!! TTCCCCATTCCATTGGTTTC+AGG - chr1_4:23881465-23881484 None:intergenic 45.0%
CTAAGCATTCCCCATTCCAT+TGG - chr1_4:23881472-23881491 None:intergenic 45.0%
! ATGATGCTGTCTAGGATGCA+AGG - chr1_4:23881889-23881908 None:intergenic 45.0%
GCACTAGAAACCAAGTGATC+AGG - chr1_4:23882082-23882101 None:intergenic 45.0%
GGAATTAGGAGGGGAAGAAA+GGG + chr1_4:23882145-23882164 Msa0157030:intron 45.0%
GGAAGAAAGGGAAGAGCTTT+GGG + chr1_4:23882157-23882176 Msa0157030:intron 45.0%
GAAGAAAGGGAAGAGCTTTG+GGG + chr1_4:23882158-23882177 Msa0157030:intron 45.0%
AGAGGAGAGGGAAATGGAAA+GGG + chr1_4:23882181-23882200 Msa0157030:intron 45.0%
!! TGGGAGAGACCTTTTAAAGG+GGG + chr1_4:23882225-23882244 Msa0157030:intron 45.0%
!! AGAGACCTTTTAAAGGGGGT+AGG + chr1_4:23882229-23882248 Msa0157030:intron 45.0%
!! GAGACCTTTTAAAGGGGGTA+GGG + chr1_4:23882230-23882249 Msa0157030:intron 45.0%
GAACTCAAAATGCTGAGACC+AGG + chr1_4:23882473-23882492 Msa0157030:intron 45.0%
ACTCAAAATGCTGAGACCAG+GGG + chr1_4:23882475-23882494 Msa0157030:intron 45.0%
TATGTAGAGAGAGAGAGGGA+GGG + chr1_4:23882608-23882627 Msa0157030:intron 45.0%
GGGGTCATCAGAAGAATTGA+AGG + chr1_4:23882874-23882893 Msa0157030:intron 45.0%
ATTGCTGTGTTGCATTGTGG+CGG + chr1_4:23883124-23883143 Msa0157030:intron 45.0%
CAACCATGATGCAAGGATGA+TGG - chr1_4:23883275-23883294 None:intergenic 45.0%
! GCATCATGGTTGCTTTCTAC+CGG + chr1_4:23883283-23883302 Msa0157030:CDS 45.0%
GCAAACCAAAGCGCAAGTAT+AGG + chr1_4:23883395-23883414 Msa0157030:CDS 45.0%
AGCGCAAGTATAGGATGAAG+AGG + chr1_4:23883404-23883423 Msa0157030:CDS 45.0%
! TGTAAATGACACACGGGTTG+AGG + chr1_4:23883438-23883457 Msa0157030:CDS 45.0%
AAACTAATACGAGGAAGGCG+GGG + chr1_4:23883482-23883501 Msa0157030:CDS 45.0%
TCGTGGGTAGTTGAGAACAA+CGG + chr1_4:23883511-23883530 Msa0157030:CDS 45.0%
GGTAGTTGAGAACAACGGTT+CGG + chr1_4:23883516-23883535 Msa0157030:CDS 45.0%
!! AACAACGGTTCGGTTGATAG+TGG + chr1_4:23883526-23883545 Msa0157030:CDS 45.0%
!! CACCAAAACTTGGTGCATCT+CGG - chr1_4:23883555-23883574 None:intergenic 45.0%
!! ATGCACCAAGTTTTGGTGGA+TGG + chr1_4:23883557-23883576 Msa0157030:CDS 45.0%
!! TGCACCAAGTTTTGGTGGAT+GGG + chr1_4:23883558-23883577 Msa0157030:CDS 45.0%
TCATCCCATCCACCAAAACT+TGG - chr1_4:23883565-23883584 None:intergenic 45.0%
!! TTTTGGTGGATGGGATGACT+TGG + chr1_4:23883567-23883586 Msa0157030:CDS 45.0%
! GCTTGTGATCTCCTTGTTGT+TGG - chr1_4:23883604-23883623 None:intergenic 45.0%
CAACAAGGAGATCACAAGCA+AGG + chr1_4:23883605-23883624 Msa0157030:CDS 45.0%
AGGAGATCACAAGCAAGGAA+AGG + chr1_4:23883610-23883629 Msa0157030:CDS 45.0%
GGAGATCACAAGCAAGGAAA+GGG + chr1_4:23883611-23883630 Msa0157030:CDS 45.0%
AAGCAAGGAAAGGGTCACAA+AGG + chr1_4:23883620-23883639 Msa0157030:CDS 45.0%
! TGGAAAGTGGTAGGTTGAGT+AGG + chr1_4:23883650-23883669 Msa0157030:CDS 45.0%
AAAAAGTGATACGCCCCTCT+TGG + chr1_4:23883681-23883700 Msa0157030:CDS 45.0%
AAAGCTCAAGTTCCCTATGG+AGG - chr1_4:23883769-23883788 None:intergenic 45.0%
TGTGTACCTGTCATTGTTGC+AGG + chr1_4:23883916-23883935 Msa0157030:three_prime_UTR 45.0%
ATGGATCCTGCAACAATGAC+AGG - chr1_4:23883925-23883944 None:intergenic 45.0%
!! TATTAAAAAAAAACTAAAAA+TGG - chr1_4:23879589-23879608 None:intergenic 5.0%
CATCAACACCACTACTGCCA+AGG + chr1_4:23879224-23879243 Msa0157030:CDS 50.0%
AACCAAGGAATGTGGTGCCT+TGG - chr1_4:23879244-23879263 None:intergenic 50.0%
GGAGAATAGAGAGGTTGAGG+TGG - chr1_4:23879278-23879297 None:intergenic 50.0%
TTTGTGGAAAAGGGTCGCCA+TGG - chr1_4:23879305-23879324 None:intergenic 50.0%
CCAACGTGGGAAGTTGTTAG+AGG - chr1_4:23879357-23879376 None:intergenic 50.0%
CCTCTAACAACTTCCCACGT+TGG + chr1_4:23879354-23879373 Msa0157030:CDS 50.0%
CTCCCAAGTAGTCTCACAAG+TGG + chr1_4:23879952-23879971 Msa0157030:intron 50.0%
TCGTGAAGGATTGTCCACCA+TGG - chr1_4:23880060-23880079 None:intergenic 50.0%
! GCTACTGATAATGCTGCCCA+AGG + chr1_4:23880676-23880695 Msa0157030:intron 50.0%
! TTTGGATTGGAATGGCTGGG+GGG + chr1_4:23880921-23880940 Msa0157030:intron 50.0%
GGAGAGAAATCTCTCCTCCA+AGG + chr1_4:23881111-23881130 Msa0157030:intron 50.0%
GGGAATGCTTAGTGTGCTAC+AGG + chr1_4:23881480-23881499 Msa0157030:intron 50.0%
GGGAATGCTTAGTGTGCTAC+AGG + chr1_4:23881480-23881499 Msa0157030:intron 50.0%
GGGAATTAGGAGGGGAAGAA+AGG + chr1_4:23882144-23882163 Msa0157030:intron 50.0%
GGGAAGAAAGGGAAGAGCTT+TGG + chr1_4:23882156-23882175 Msa0157030:intron 50.0%
GAGAGGAGAGGGAAATGGAA+AGG + chr1_4:23882180-23882199 Msa0157030:intron 50.0%
GAGAGGGAAATGGAAAGGGA+GGG + chr1_4:23882185-23882204 Msa0157030:intron 50.0%
CTCTCCCTACCCCCTTTAAA+AGG - chr1_4:23882237-23882256 None:intergenic 50.0%
!!! TATCGGAGGGGAGTTTTGGA+GGG - chr1_4:23882345-23882364 None:intergenic 50.0%
!!! AAGGTATCGGAGGGGAGTTT+TGG - chr1_4:23882349-23882368 None:intergenic 50.0%
GTATGTAGAGAGAGAGAGGG+AGG + chr1_4:23882607-23882626 Msa0157030:intron 50.0%
AGTTTGTGTGGGTGTGTGTG+TGG + chr1_4:23882851-23882870 Msa0157030:intron 50.0%
GTTTGTGTGGGTGTGTGTGT+GGG + chr1_4:23882852-23882871 Msa0157030:intron 50.0%
TTTGTGTGGGTGTGTGTGTG+GGG + chr1_4:23882853-23882872 Msa0157030:intron 50.0%
! CGGTGTTAGTGTCAGTGTTG+TGG + chr1_4:23883028-23883047 Msa0157030:intron 50.0%
TGCCCATCATCCTTGCATCA+TGG + chr1_4:23883269-23883288 Msa0157030:CDS 50.0%
! CATGAGGAAAGCTTTTGGGC+CGG - chr1_4:23883305-23883324 None:intergenic 50.0%
GAGGGATTGCTAATGCCATG+AGG - chr1_4:23883321-23883340 None:intergenic 50.0%
!! CAAGTGCTGACTGACTGAGA+GGG - chr1_4:23883339-23883358 None:intergenic 50.0%
!! CTTGCGCTTTGGTTTGCTCT+CGG - chr1_4:23883392-23883411 None:intergenic 50.0%
! AGCCGAGATGCACCAAGTTT+TGG + chr1_4:23883550-23883569 Msa0157030:CDS 50.0%
!! CGAGATGCACCAAGTTTTGG+TGG + chr1_4:23883553-23883572 Msa0157030:CDS 50.0%
AGAGAGCAAGGCCAACAACA+AGG + chr1_4:23883590-23883609 Msa0157030:CDS 50.0%
ATGTGGTGCCTTGGCAGTAG+TGG - chr1_4:23879235-23879254 None:intergenic 55.0%
! TGCCAAGGCACCACATTCCT+TGG + chr1_4:23879239-23879258 Msa0157030:CDS 55.0%
GTGGTCGAGAGAGGTAACCA+AGG - chr1_4:23879259-23879278 None:intergenic 55.0%
GAAAAGGGTCGCCATGGATG+AGG - chr1_4:23879299-23879318 None:intergenic 55.0%
ACACTACCCTGTGGGCGTTT+GGG - chr1_4:23880514-23880533 None:intergenic 55.0%
TACACTACCCTGTGGGCGTT+TGG - chr1_4:23880515-23880534 None:intergenic 55.0%
! TTGGATTGGAATGGCTGGGG+GGG + chr1_4:23880922-23880941 Msa0157030:intron 55.0%
TGTGAAGGGGAAACCCTTGG+AGG - chr1_4:23881128-23881147 None:intergenic 55.0%
!! AAGGGAAGAGCTTTGGGGAG+AGG + chr1_4:23882163-23882182 Msa0157030:intron 55.0%
!! AAGAGCTTTGGGGAGAGGAG+AGG + chr1_4:23882168-23882187 Msa0157030:intron 55.0%
!! AGAGCTTTGGGGAGAGGAGA+GGG + chr1_4:23882169-23882188 Msa0157030:intron 55.0%
TTGGGGAGAGGAGAGGGAAA+TGG + chr1_4:23882175-23882194 Msa0157030:intron 55.0%
GGAGAGGGAAATGGAAAGGG+AGG + chr1_4:23882184-23882203 Msa0157030:intron 55.0%
!! GTATCGGAGGGGAGTTTTGG+AGG - chr1_4:23882346-23882365 None:intergenic 55.0%
CAGAGCAGATTACAGTCCCC+TGG - chr1_4:23882494-23882513 None:intergenic 55.0%
TAGAGAGAGAGAGGGAGGGA+GGG + chr1_4:23882612-23882631 Msa0157030:intron 55.0%
TTGTGTGGGTGTGTGTGTGG+GGG + chr1_4:23882854-23882873 Msa0157030:intron 55.0%
CGGCCCAAAAGCTTTCCTCA+TGG + chr1_4:23883303-23883322 Msa0157030:CDS 55.0%
!! GCAAGTGCTGACTGACTGAG+AGG - chr1_4:23883340-23883359 None:intergenic 55.0%
CAGTCAGTCAGCACTTGCAC+TGG + chr1_4:23883342-23883361 Msa0157030:CDS 55.0%
! GGGATGACTTGGAGAGAGCA+AGG + chr1_4:23883578-23883597 Msa0157030:CDS 55.0%
GAGGTTGAGGTGGTCGAGAG+AGG - chr1_4:23879268-23879287 None:intergenic 60.0%
GGCAGCGTTGTAGGCTGCAA+AGG - chr1_4:23880039-23880058 None:intergenic 60.0%
TGCAGCCTACAACGCTGCCA+TGG + chr1_4:23880040-23880059 Msa0157030:intron 60.0%
AGCCTACAACGCTGCCATGG+TGG + chr1_4:23880043-23880062 Msa0157030:intron 60.0%
GTCCACCATGGCAGCGTTGT+AGG - chr1_4:23880048-23880067 None:intergenic 60.0%
TTGGAATGGCTGGGGGGGAA+TGG + chr1_4:23880927-23880946 Msa0157030:intron 60.0%
GTAGAGAGAGAGAGGGAGGG+AGG + chr1_4:23882611-23882630 Msa0157030:intron 60.0%
TGTGTGGGTGTGTGTGTGGG+GGG + chr1_4:23882855-23882874 Msa0157030:intron 60.0%
GATGGGCAGCGTCCAACCAT+AGG - chr1_4:23883257-23883276 None:intergenic 60.0%
AGAGAGAGAGGGAGGGAGGG+AGG + chr1_4:23882615-23882634 Msa0157030:intron 65.0%
GAGAGAGAGGGAGGGAGGGA+GGG + chr1_4:23882616-23882635 Msa0157030:intron 65.0%
AGAGGGAGGGAGGGAGGGAA+GGG + chr1_4:23882621-23882640 Msa0157030:intron 65.0%
GAAGGCGGGGATGCAGTCGT+GGG + chr1_4:23883495-23883514 Msa0157030:CDS 65.0%
GAGAGGGAGGGAGGGAGGGA+AGG + chr1_4:23882620-23882639 Msa0157030:intron 70.0%
GAGGGAGGGAGGGAGGGAAG+GGG + chr1_4:23882622-23882641 Msa0157030:intron 70.0%
AGGGAGGGAGGGAGGGAAGG+GGG + chr1_4:23882623-23882642 Msa0157030:intron 70.0%
GGAAGGCGGGGATGCAGTCG+TGG + chr1_4:23883494-23883513 Msa0157030:CDS 70.0%
GGGAGGGAGGGAGGGAAGGG+GGG + chr1_4:23882624-23882643 Msa0157030:intron 75.0%
GGAGGGAGGGAGGGAAGGGG+GGG + chr1_4:23882625-23882644 Msa0157030:intron 75.0%
Chromosome Type Strat End Strand Name
chr1_4 gene 23879188 23884068 23879188 ID=Msa0157030;Name=Msa0157030
chr1_4 mRNA 23879188 23884068 23879188 ID=Msa0157030-mRNA-1;Parent=Msa0157030;Name=Msa0157030-mRNA-1;_AED=0.06;_eAED=0.06;_QI=24|1|1|1|1|1|2|309|294
chr1_4 exon 23879188 23879580 23879188 ID=Msa0157030-mRNA-1:exon:8297;Parent=Msa0157030-mRNA-1
chr1_4 exon 23883244 23884068 23883244 ID=Msa0157030-mRNA-1:exon:8298;Parent=Msa0157030-mRNA-1
chr1_4 five_prime_UTR 23879188 23879211 23879188 ID=Msa0157030-mRNA-1:five_prime_utr;Parent=Msa0157030-mRNA-1
chr1_4 CDS 23879212 23879580 23879212 ID=Msa0157030-mRNA-1:cds;Parent=Msa0157030-mRNA-1
chr1_4 CDS 23883244 23883759 23883244 ID=Msa0157030-mRNA-1:cds;Parent=Msa0157030-mRNA-1
chr1_4 three_prime_UTR 23883760 23884068 23883760 ID=Msa0157030-mRNA-1:three_prime_utr;Parent=Msa0157030-mRNA-1
Gene Sequence

>Msa0157030

ATGGAAGCTCATCATCAACACCACTACTGCCAAGGCACCACATTCCTTGGTTACCTCTCTCGACCACCTCAACCTCTCTATTCTCCTCATCCATGGCGACCCTTTTCCACAAAACCCATGTCTCATTCTCGCGTATCTTTCTCCTCTAACAACTTCCCACGTTGGAATTCCAATGATGACACTTTTCGACCTCCAAACTTCAACTTCAACAATGCCAGAACCAAGCCTCTAGAAGAAGATGAAGATGAGGAAGATGATGAATATGTGAAGAAGAGAAGGTGGTGGTCTGATGAGTATACAGAAGAAACTGAAGAAGAAGGAAATAGTGGAATTTTTGAAGATGCTTTAGATAGTTTGTGGATTCTCAAGGTTTTTAAATCCTATGGTTGGACGCTGCCCATCATCCTTGCATCATGGTTGCTTTCTACCGGCCCAAAAGCTTTCCTCATGGCATTAGCAATCCCTCTCAGTCAGTCAGCACTTGCACTGGCAATTGAGAAATTATGGGGACGGACCGAGAGCAAACCAAAGCGCAAGTATAGGATGAAGAGGAAACGCCGAAATGTAAATGACACACGGGTTGAGGAAGAGCCAGAAGAAACCCAGAAAACTAATACGAGGAAGGCGGGGATGCAGTCGTGGGTAGTTGAGAACAACGGTTCGGTTGATAGTGGCAGCCGAGATGCACCAAGTTTTGGTGGATGGGATGACTTGGAGAGAGCAAGGCCAACAACAAGGAGATCACAAGCAAGGAAAGGGTCACAAAGGATGAATATGGAAAGTGGTAGGTTGAGTAGGAGAGAAAGAAAAAGTGATACGCCCCTCTTGGTTCGATTGCTTATTGCTATTTTTCCATTTTTGGGCACATGGACAAAGATGCTGTAA

Protein sequence

>Msa0157030

MEAHHQHHYCQGTTFLGYLSRPPQPLYSPHPWRPFSTKPMSHSRVSFSSNNFPRWNSNDDTFRPPNFNFNNARTKPLEEDEDEEDDEYVKKRRWWSDEYTEETEEEGNSGIFEDALDSLWILKVFKSYGWTLPIILASWLLSTGPKAFLMALAIPLSQSALALAIEKLWGRTESKPKRKYRMKRKRRNVNDTRVEEEPEETQKTNTRKAGMQSWVVENNGSVDSGSRDAPSFGGWDDLERARPTTRRSQARKGSQRMNMESGRLSRRERKSDTPLLVRLLIAIFPFLGTWTKML*