AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0383110


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0383110 MtrunA17_Chr3g0138501 90.236 297 24 3 1 296 1 293 6.00e-180 497
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0383110 AT5G11450.2 64.516 248 81 3 53 296 71 315 3.10e-113 330
Msa0383110 AT5G11450.1 64.516 248 81 3 53 296 53 297 5.68e-113 328

Find 75 sgRNAs with CRISPR-Local

Find 250 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCTGAAGATAAGGTTGTTAT+TGG 0.169527 3_1:-85875310 None:intergenic
ACAAAGATCCCTGGAGATTT+TGG 0.175536 3_1:+85879175 Msa0383110:CDS
ACTGAAACGGTTGTCTCTTT+AGG 0.194094 3_1:+85879343 Msa0383110:three_prime_UTR
CTGAAACGGTTGTCTCTTTA+GGG 0.239298 3_1:+85879344 Msa0383110:three_prime_UTR
GAAATACTTACCATTGAATT+AGG 0.251354 3_1:-85878103 None:intergenic
ACTCTTCAAAGAACATAATA+TGG 0.255715 3_1:-85879263 None:intergenic
TGTCTTGCAGTGGCTCTTGC+TGG 0.263989 3_1:+85875545 Msa0383110:intron
AGGAGCATTTGGTTTGGTTT+TGG 0.272796 3_1:-85875347 None:intergenic
TCTTATCCTTCAAGTTTATA+AGG 0.274761 3_1:-85876987 None:intergenic
CAACCGTTTCAGTAGGGATT+TGG 0.275099 3_1:-85879333 None:intergenic
AAGAGGAATTTACCAGAAAA+AGG 0.297343 3_1:-85875471 None:intergenic
TTTCATCATCTTCTTCTAGA+AGG 0.299644 3_1:+85875397 Msa0383110:CDS
CGCGAAGTGGTGAAACTAAC+TGG 0.325804 3_1:+85875224 Msa0383110:five_prime_UTR
TATAGGTGGGGTGATGGAAT+TGG 0.358565 3_1:+85875197 Msa0383110:five_prime_UTR
AGATTGAAGGCGAACCTTAC+TGG 0.380241 3_1:+85878053 Msa0383110:intron
CCAATAACAACCTTATCTTC+AGG 0.404699 3_1:+85875310 Msa0383110:CDS
CTGAAGATAAGGTTGTTATT+GGG 0.405745 3_1:-85875309 None:intergenic
GGATTGTTGGAAGGAGCATT+TGG 0.408319 3_1:-85875358 None:intergenic
CTGAAGAATCAGGAATTTAC+CGG 0.413569 3_1:+85878207 Msa0383110:CDS
TGCAAACCTTATAAACTTGA+AGG 0.413975 3_1:+85876981 Msa0383110:CDS
AAGAATAAGAGCTGGATTGT+TGG 0.426768 3_1:-85875286 None:intergenic
ACTTCAACAAGACCCCAAAA+TGG 0.433609 3_1:+85875577 Msa0383110:CDS
ATTCATGTAGTAACCTTTGT+GGG 0.433909 3_1:+85879225 Msa0383110:three_prime_UTR
TGAAAGTGAGATAATGTTAT+AGG 0.440242 3_1:+85875180 None:intergenic
ATTGTCTCCTCACAGATTGA+AGG 0.445126 3_1:+85878040 Msa0383110:intron
GTTGGAAGGAGCATTTGGTT+TGG 0.448463 3_1:-85875353 None:intergenic
GTTGTACAGTCTGAAGAATC+AGG 0.450686 3_1:+85878197 Msa0383110:intron
TATTCATGTAGTAACCTTTG+TGG 0.456061 3_1:+85879224 Msa0383110:three_prime_UTR
GCAGCCGATGAATATCGTTC+TGG 0.459979 3_1:-85876509 None:intergenic
CTATGACTAGGTATTTAAGA+AGG 0.463174 3_1:-85879373 None:intergenic
AATCTCCAGGGATCTTTGTA+TGG 0.474697 3_1:-85879171 None:intergenic
TAATGTTATAGGTGGGGTGA+TGG 0.475652 3_1:+85875191 Msa0383110:five_prime_UTR
ACTTGAAGGATAAGAGCAAA+TGG 0.476008 3_1:+85876995 Msa0383110:CDS
AAGAGGGTAAAGATAAGAAT+AGG 0.477402 3_1:-85875624 None:intergenic
TTTCCAAATCCCTACTGAAA+CGG 0.480154 3_1:+85879330 Msa0383110:three_prime_UTR
GGATTACCCTCCTGAAGATA+AGG 0.481706 3_1:-85875320 None:intergenic
TCGTAAATCACCTAATTCAA+TGG 0.488014 3_1:+85878093 Msa0383110:CDS
TTTAGCTGACAAATCTTCAC+TGG 0.488647 3_1:+85877044 Msa0383110:CDS
TTCATCATCTTCTTCTAGAA+GGG 0.496757 3_1:+85875398 Msa0383110:CDS
TTTATAAGGTTTGCACTTGG+AGG 0.505460 3_1:-85876973 None:intergenic
TTCCTCCATACAAAGATCCC+TGG 0.524136 3_1:+85879166 Msa0383110:CDS
TGCATCGAGAACTGAACTCT+CGG 0.532100 3_1:-85877776 None:intergenic
TTATAAGGTTTGCACTTGGA+GGG 0.533271 3_1:-85876972 None:intergenic
TTATTGGGAAGAATAAGAGC+TGG 0.537380 3_1:-85875294 None:intergenic
TATGACTAGGTATTTAAGAA+GGG 0.537605 3_1:-85879372 None:intergenic
AATTAGGTGATTTACGAATG+AGG 0.544454 3_1:-85878087 None:intergenic
TCTTAAATACCTAGTCATAG+TGG 0.544470 3_1:+85879376 Msa0383110:three_prime_UTR
AAAGAGACAACCGTTTCAGT+AGG 0.566133 3_1:-85879340 None:intergenic
TTTATCATCGGATTGTTGGA+AGG 0.566618 3_1:-85875367 None:intergenic
AAGAGACAACCGTTTCAGTA+GGG 0.567852 3_1:-85879339 None:intergenic
AGGTATTCATAATACCAGTA+AGG 0.568849 3_1:-85878067 None:intergenic
AAGTGAGATAATGTTATAGG+TGG 0.580126 3_1:+85875183 None:intergenic
ATGGACTGCAAAAGATGTTG+TGG 0.582234 3_1:+85877014 Msa0383110:CDS
CAATCTCATCATTTCCGTCA+CGG 0.585889 3_1:+85876854 Msa0383110:CDS
ACTGAGGGTCGAAGCGCTGA+TGG 0.592389 3_1:-85878558 None:intergenic
ATAAGAGCTGGATTGTTGGA+AGG 0.595730 3_1:-85875282 None:intergenic
AAACTAACTGGAGCTAGCAA+TGG 0.598377 3_1:+85875236 Msa0383110:exon
AAGTTTATAAGGTTTGCACT+TGG 0.598414 3_1:-85876976 None:intergenic
AGTGAGATAATGTTATAGGT+GGG 0.602141 3_1:+85875184 None:intergenic
CTGTTGAAGCAACATAATGC+CGG 0.605398 3_1:-85878226 None:intergenic
GTGAGATAATGTTATAGGTG+GGG 0.605698 3_1:+85875185 None:intergenic
CTCCAGGGATCTTTGTATGG+AGG 0.613390 3_1:-85879168 None:intergenic
AAAGCCAGAACGATATTCAT+CGG 0.615878 3_1:+85876505 Msa0383110:CDS
ATAACAACCTTATCTTCAGG+AGG 0.618318 3_1:+85875313 Msa0383110:CDS
CTCGGCTGAGCGCTGAACTG+AGG 0.632575 3_1:-85877758 None:intergenic
AATTCCTTGCAGCTAATGCG+CGG 0.633327 3_1:+85876796 Msa0383110:intron
GCTTCAACAGCAGAAAGAGA+TGG 0.651152 3_1:+85878239 Msa0383110:CDS
TAATTAGAACCACTATGACT+AGG 0.657996 3_1:-85879385 None:intergenic
TAACAACCTTATCTTCAGGA+GGG 0.664496 3_1:+85875314 Msa0383110:CDS
ACATGAATTTCACCCCACAA+AGG 0.669412 3_1:-85879238 None:intergenic
AGATTGAGGAAATACCGTGA+CGG 0.681795 3_1:-85876868 None:intergenic
TTCATGTAGTAACCTTTGTG+GGG 0.682116 3_1:+85879226 Msa0383110:three_prime_UTR
TTGTTAGAGATAGTGAAGTG+AGG 0.696186 3_1:-85875440 None:intergenic
CTTCGACCCTCAGTCCACAG+TGG 0.711960 3_1:+85878567 Msa0383110:CDS
TGGAATTGGAAATCGCGAAG+TGG 0.727811 3_1:+85875211 Msa0383110:five_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAACGAAAATAAAATAAAA+TGG - chr3_1:85875709-85875728 None:intergenic 10.0%
!! AACTATAAATAAAGAAATAA+GGG - chr3_1:85876189-85876208 None:intergenic 10.0%
!! TATTTATAGTTGTTATAAAT+TGG + chr3_1:85876198-85876217 Msa0383110:intron 10.0%
!! AATATCAGAAATAAATTTAA+AGG - chr3_1:85877716-85877735 None:intergenic 10.0%
!! CAACTATAAATAAAGAAATA+AGG - chr3_1:85876190-85876209 None:intergenic 15.0%
!!! TAGTTTAATTATAGTTTTGT+TGG - chr3_1:85876389-85876408 None:intergenic 15.0%
!! AAAACTATAATTAAACTAGT+TGG + chr3_1:85876391-85876410 Msa0383110:intron 15.0%
!! AAAATGATCATAAAAAATAC+TGG + chr3_1:85877260-85877279 Msa0383110:intron 15.0%
!!! AAAATATTGATTTAACATGT+TGG - chr3_1:85877321-85877340 None:intergenic 15.0%
!!! ACTAATATGTAAATAGTTTT+AGG - chr3_1:85877501-85877520 None:intergenic 15.0%
!!! TGTTACAAATTTACATATTT+TGG + chr3_1:85877992-85878011 Msa0383110:intron 15.0%
!! AAAAATTATTCATCTATCAA+TGG + chr3_1:85878850-85878869 Msa0383110:intron 15.0%
!! AAAATTATTCATCTATCAAT+GGG + chr3_1:85878851-85878870 Msa0383110:intron 15.0%
!! AAAAAATTATTAGAATGTCA+AGG - chr3_1:85879076-85879095 None:intergenic 15.0%
!!! TAATAATTTTTTATGCAGAT+GGG + chr3_1:85879084-85879103 Msa0383110:intron 15.0%
!!! TGAAAAATCTCTTTTATCAT+CGG - chr3_1:85875382-85875401 None:intergenic 20.0%
!!! TTGAAGACAAAATTTTTAGA+GGG - chr3_1:85875656-85875675 None:intergenic 20.0%
!!! TTTGAAGACAAAATTTTTAG+AGG - chr3_1:85875657-85875676 None:intergenic 20.0%
!!! CTAAAAATTTTGTCTTCAAA+TGG + chr3_1:85875657-85875676 Msa0383110:CDS 20.0%
!! AGATTTAAAGATTAATGAGT+TGG + chr3_1:85875934-85875953 Msa0383110:intron 20.0%
!! TGGAAACAAATTGAAAAAAA+AGG + chr3_1:85876121-85876140 Msa0383110:intron 20.0%
!! ATGTTATTGATATTGTTGAA+TGG + chr3_1:85876262-85876281 Msa0383110:intron 20.0%
!! TGTTATTGATATTGTTGAAT+GGG + chr3_1:85876263-85876282 Msa0383110:intron 20.0%
!! ATTTACTCTTGCTAATAATT+TGG - chr3_1:85876333-85876352 None:intergenic 20.0%
!! AACTCTTTCCATATAATTAA+AGG + chr3_1:85876471-85876490 Msa0383110:intron 20.0%
!! ACTCTTTCCATATAATTAAA+GGG + chr3_1:85876472-85876491 Msa0383110:intron 20.0%
!!! TATAAGCTCTTTTAAAAGAT+AGG + chr3_1:85876659-85876678 Msa0383110:intron 20.0%
!! ACTAGATATTATCTCTAATT+GGG + chr3_1:85877209-85877228 Msa0383110:intron 20.0%
!!! TAGAAGTTTTGATGTAATAT+TGG + chr3_1:85877448-85877467 Msa0383110:intron 20.0%
!! ATTAGAATTCATATTGTTCT+CGG - chr3_1:85877571-85877590 None:intergenic 20.0%
!! AGATCCATAGAAAAAAAATA+AGG + chr3_1:85878438-85878457 Msa0383110:intron 20.0%
!!! TTAGCCTTATTTTTTTTCTA+TGG - chr3_1:85878445-85878464 None:intergenic 20.0%
!!! TCTTTTTTGGAAAAGAATAA+AGG + chr3_1:85878826-85878845 Msa0383110:intron 20.0%
!!! ATGATTTGAAATAGTATGTT+AGG - chr3_1:85878973-85878992 None:intergenic 20.0%
!!! CTAATAATTTTTTATGCAGA+TGG + chr3_1:85879083-85879102 Msa0383110:intron 20.0%
!!! AATAATTTTTTATGCAGATG+GGG + chr3_1:85879085-85879104 Msa0383110:intron 20.0%
!!! TTGAAGAGTGAAATTTTTAA+TGG + chr3_1:85879277-85879296 Msa0383110:three_prime_UTR 20.0%
! CGAAAATAAAATAAAATGGC+AGG - chr3_1:85875705-85875724 None:intergenic 25.0%
!! TTTAAAGATTAATGAGTTGG+TGG + chr3_1:85875937-85875956 Msa0383110:intron 25.0%
!! AATGAACTTCTTTTCTCAAT+TGG - chr3_1:85876238-85876257 None:intergenic 25.0%
! ATAATTTGGAGATGTGTTAA+TGG - chr3_1:85876319-85876338 None:intergenic 25.0%
!!! AAGTTTTCATTGATTGTTGT+AGG + chr3_1:85876443-85876462 Msa0383110:intron 25.0%
! GATTCTACCCTTTAATTATA+TGG - chr3_1:85876482-85876501 None:intergenic 25.0%
!!! AGCAATTTTAATCCAGAAAA+AGG - chr3_1:85876771-85876790 None:intergenic 25.0%
!! TTTTCCCATTAAATTCAGAT+AGG + chr3_1:85876949-85876968 Msa0383110:intron 25.0%
!! TCTTATCCTTCAAGTTTATA+AGG - chr3_1:85876990-85877009 None:intergenic 25.0%
! GATAATATCTAGTGAGTAAT+GGG - chr3_1:85877202-85877221 None:intergenic 25.0%
! AGATAATATCTAGTGAGTAA+TGG - chr3_1:85877203-85877222 None:intergenic 25.0%
! CACTAGATATTATCTCTAAT+TGG + chr3_1:85877208-85877227 Msa0383110:intron 25.0%
!! ATCATTTTATATCGCTTATC+TGG - chr3_1:85877248-85877267 None:intergenic 25.0%
! AATATTGGATACAAGAATGA+AGG + chr3_1:85877463-85877482 Msa0383110:intron 25.0%
! ATATTGGATACAAGAATGAA+GGG + chr3_1:85877464-85877483 Msa0383110:intron 25.0%
! GAGAACAATATGAATTCTAA+TGG + chr3_1:85877570-85877589 Msa0383110:intron 25.0%
!! ACAAACAAATCACATGTTTT+GGG - chr3_1:85877939-85877958 None:intergenic 25.0%
!! AACAAACAAATCACATGTTT+TGG - chr3_1:85877940-85877959 None:intergenic 25.0%
! GAAATACTTACCATTGAATT+AGG - chr3_1:85878106-85878125 None:intergenic 25.0%
!!! TGGTGCATTTTCTTTTTTTA+AGG + chr3_1:85878130-85878149 Msa0383110:intron 25.0%
!!! TTCTTTTTTTAAGGAAGTTG+TGG + chr3_1:85878139-85878158 Msa0383110:intron 25.0%
! AAAGTAGGAATAATTTGAGA+GGG - chr3_1:85878269-85878288 None:intergenic 25.0%
! TAAAGTAGGAATAATTTGAG+AGG - chr3_1:85878270-85878289 None:intergenic 25.0%
! GTTCTCAGTAAGAATTTATA+TGG - chr3_1:85878796-85878815 None:intergenic 25.0%
!!! CCTTTGAACAATATTTTGAT+GGG - chr3_1:85878999-85879018 None:intergenic 25.0%
!!! TCCTTTGAACAATATTTTGA+TGG - chr3_1:85879000-85879019 None:intergenic 25.0%
!!! ATTCGTTGATTTTCAAATGA+AGG - chr3_1:85879026-85879045 None:intergenic 25.0%
! ACTCTTCAAAGAACATAATA+TGG - chr3_1:85879266-85879285 None:intergenic 25.0%
! TATGACTAGGTATTTAAGAA+GGG - chr3_1:85879375-85879394 None:intergenic 25.0%
! CTGAAGATAAGGTTGTTATT+GGG - chr3_1:85875312-85875331 None:intergenic 30.0%
!!! ATTTGGTTTGGTTTTGGTTA+AGG - chr3_1:85875344-85875363 None:intergenic 30.0%
TTTCATCATCTTCTTCTAGA+AGG + chr3_1:85875397-85875416 Msa0383110:CDS 30.0%
! TTCATCATCTTCTTCTAGAA+GGG + chr3_1:85875398-85875417 Msa0383110:CDS 30.0%
AAGAGGAATTTACCAGAAAA+AGG - chr3_1:85875474-85875493 None:intergenic 30.0%
!! TCCAAAAAAGAAGCCATTTT+GGG - chr3_1:85875593-85875612 None:intergenic 30.0%
! ATCCAAAAAAGAAGCCATTT+TGG - chr3_1:85875594-85875613 None:intergenic 30.0%
AAGAGGGTAAAGATAAGAAT+AGG - chr3_1:85875627-85875646 None:intergenic 30.0%
TAAAATAAAATGGCAGGCAA+AGG - chr3_1:85875699-85875718 None:intergenic 30.0%
! GTTTCTGTTATAGCTTTTCT+GGG - chr3_1:85875793-85875812 None:intergenic 30.0%
! AGTTTCTGTTATAGCTTTTC+TGG - chr3_1:85875794-85875813 None:intergenic 30.0%
! AATTTGTTTCCAGTTTAAGC+GGG - chr3_1:85876113-85876132 None:intergenic 30.0%
! CAATTTGTTTCCAGTTTAAG+CGG - chr3_1:85876114-85876133 None:intergenic 30.0%
! TGTGTTAATGGCTAGTTATA+TGG - chr3_1:85876307-85876326 None:intergenic 30.0%
AGCAAGAGTAAATAATGCTT+TGG + chr3_1:85876340-85876359 Msa0383110:intron 30.0%
AACAATCAATGAAAACTTGC+AGG - chr3_1:85876441-85876460 None:intergenic 30.0%
CAAAAAAACTTACGAGAAAG+TGG - chr3_1:85876536-85876555 None:intergenic 30.0%
!!! TTTTTTTGTCTTCCTTTGCA+AGG + chr3_1:85876548-85876567 Msa0383110:intron 30.0%
AAGTTTATAAGGTTTGCACT+TGG - chr3_1:85876979-85876998 None:intergenic 30.0%
TGCAAACCTTATAAACTTGA+AGG + chr3_1:85876981-85877000 Msa0383110:CDS 30.0%
GTTACTCATGCTATTCTTAT+TGG + chr3_1:85877073-85877092 Msa0383110:intron 30.0%
AACTATAGTTTAACCATGTG+GGG - chr3_1:85877397-85877416 None:intergenic 30.0%
CAACTATAGTTTAACCATGT+GGG - chr3_1:85877398-85877417 None:intergenic 30.0%
TCAACTATAGTTTAACCATG+TGG - chr3_1:85877399-85877418 None:intergenic 30.0%
CCTAAAGAATACAACTTCAA+AGG - chr3_1:85877631-85877650 None:intergenic 30.0%
!! CCTTTGAAGTTGTATTCTTT+AGG + chr3_1:85877628-85877647 Msa0383110:intron 30.0%
AGGTATTCATAATACCAGTA+AGG - chr3_1:85878070-85878089 None:intergenic 30.0%
AATTAGGTGATTTACGAATG+AGG - chr3_1:85878090-85878109 None:intergenic 30.0%
TCGTAAATCACCTAATTCAA+TGG + chr3_1:85878093-85878112 Msa0383110:CDS 30.0%
AAAAAAGAAAATGCACCAAG+AGG - chr3_1:85878128-85878147 None:intergenic 30.0%
! GGTGTATGTGATTTTTACTT+TGG + chr3_1:85878160-85878179 Msa0383110:intron 30.0%
AATTCACATTAGAATGCACA+AGG - chr3_1:85878320-85878339 None:intergenic 30.0%
TTTCAAGCAATATTATGCAG+AGG - chr3_1:85878346-85878365 None:intergenic 30.0%
ATACTTGTTCCAGAGATAAA+AGG + chr3_1:85878413-85878432 Msa0383110:intron 30.0%
TACTAATTGTGCTTGATTTC+AGG + chr3_1:85878524-85878543 Msa0383110:intron 30.0%
!! AAGTTGACTTGACAATAGTT+TGG + chr3_1:85878766-85878785 Msa0383110:intron 30.0%
ATATATGCTATCAACTTCTC+AGG - chr3_1:85878886-85878905 None:intergenic 30.0%
TTCAGTAGAAAATGAAGACT+TGG - chr3_1:85878935-85878954 None:intergenic 30.0%
CCCATCAAAATATTGTTCAA+AGG + chr3_1:85878996-85879015 Msa0383110:intron 30.0%
! ATTTTTCACCAAAATCTCCA+GGG - chr3_1:85879186-85879205 None:intergenic 30.0%
TATTCATGTAGTAACCTTTG+TGG + chr3_1:85879224-85879243 Msa0383110:three_prime_UTR 30.0%
ATTCATGTAGTAACCTTTGT+GGG + chr3_1:85879225-85879244 Msa0383110:three_prime_UTR 30.0%
CTATGACTAGGTATTTAAGA+AGG - chr3_1:85879376-85879395 None:intergenic 30.0%
TCTTAAATACCTAGTCATAG+TGG + chr3_1:85879376-85879395 Msa0383110:three_prime_UTR 30.0%
TAATTAGAACCACTATGACT+AGG - chr3_1:85879388-85879407 None:intergenic 30.0%
!! CAATGGTTTTACACTCTCTA+TGG + chr3_1:85875253-85875272 Msa0383110:exon 35.0%
AAGAATAAGAGCTGGATTGT+TGG - chr3_1:85875289-85875308 None:intergenic 35.0%
TTATTGGGAAGAATAAGAGC+TGG - chr3_1:85875297-85875316 None:intergenic 35.0%
CCTGAAGATAAGGTTGTTAT+TGG - chr3_1:85875313-85875332 None:intergenic 35.0%
CCAATAACAACCTTATCTTC+AGG + chr3_1:85875310-85875329 Msa0383110:CDS 35.0%
ATAACAACCTTATCTTCAGG+AGG + chr3_1:85875313-85875332 Msa0383110:CDS 35.0%
TAACAACCTTATCTTCAGGA+GGG + chr3_1:85875314-85875333 Msa0383110:CDS 35.0%
TTTATCATCGGATTGTTGGA+AGG - chr3_1:85875370-85875389 None:intergenic 35.0%
! CTCTTTTATCATCGGATTGT+TGG - chr3_1:85875374-85875393 None:intergenic 35.0%
TTGTTAGAGATAGTGAAGTG+AGG - chr3_1:85875443-85875462 None:intergenic 35.0%
AGCAGCAAATGAAGAAAAAG+AGG - chr3_1:85875491-85875510 None:intergenic 35.0%
!! CCAAAAAAGAAGCCATTTTG+GGG - chr3_1:85875592-85875611 None:intergenic 35.0%
TCTTCTCTCTACATGAAAGT+GGG - chr3_1:85875832-85875851 None:intergenic 35.0%
TTTCATGTAGAGAGAAGAGT+AGG + chr3_1:85875834-85875853 Msa0383110:intron 35.0%
AGTAAGGAGAGTAGATTAGA+TGG + chr3_1:85875871-85875890 Msa0383110:intron 35.0%
! AAGTCTTATCCCATTAAGTG+TGG - chr3_1:85876006-85876025 None:intergenic 35.0%
AAAGCCAGAACGATATTCAT+CGG + chr3_1:85876505-85876524 Msa0383110:CDS 35.0%
! GCTTTGTAGTTTCCTTTTTC+TGG + chr3_1:85876756-85876775 Msa0383110:intron 35.0%
! ATGCAACAAGTTTGAGATTG+AGG - chr3_1:85876885-85876904 None:intergenic 35.0%
AGGGCCTATCTGAATTTAAT+GGG - chr3_1:85876956-85876975 None:intergenic 35.0%
TTATAAGGTTTGCACTTGGA+GGG - chr3_1:85876975-85876994 None:intergenic 35.0%
TTTATAAGGTTTGCACTTGG+AGG - chr3_1:85876976-85876995 None:intergenic 35.0%
ACTTGAAGGATAAGAGCAAA+TGG + chr3_1:85876995-85877014 Msa0383110:CDS 35.0%
TTTAGCTGACAAATCTTCAC+TGG + chr3_1:85877044-85877063 Msa0383110:CDS 35.0%
TTGAAGAAACAGTAGCTATC+GGG - chr3_1:85877144-85877163 None:intergenic 35.0%
CTTGAAGAAACAGTAGCTAT+CGG - chr3_1:85877145-85877164 None:intergenic 35.0%
! TATCTCTAATTGGGAAGCAT+AGG + chr3_1:85877218-85877237 Msa0383110:intron 35.0%
!!! AGTCAAGCCTTTTTAGCTTT+TGG + chr3_1:85877518-85877537 Msa0383110:intron 35.0%
!!! GTCAAGCCTTTTTAGCTTTT+GGG + chr3_1:85877519-85877538 Msa0383110:intron 35.0%
TTGACACCCAAAAGCTAAAA+AGG - chr3_1:85877528-85877547 None:intergenic 35.0%
TTTGAGCACTTGTATATGCA+AGG + chr3_1:85877597-85877616 Msa0383110:intron 35.0%
TGAAGTTGTATTCTTTAGGC+AGG + chr3_1:85877632-85877651 Msa0383110:intron 35.0%
TTGTATTCTTTAGGCAGGAT+TGG + chr3_1:85877637-85877656 Msa0383110:intron 35.0%
CAATGGTAAGTATTTCCTCT+TGG + chr3_1:85878110-85878129 Msa0383110:intron 35.0%
CTGAAGAATCAGGAATTTAC+CGG + chr3_1:85878207-85878226 Msa0383110:CDS 35.0%
CACGTTTGCAATACTAAAGT+AGG - chr3_1:85878284-85878303 None:intergenic 35.0%
TATTGCTTGAAAGCTCTTGT+TGG + chr3_1:85878354-85878373 Msa0383110:intron 35.0%
CAAGTATGACTCTGATTGAA+GGG - chr3_1:85878400-85878419 None:intergenic 35.0%
ACAAGTATGACTCTGATTGA+AGG - chr3_1:85878401-85878420 None:intergenic 35.0%
! TGGATCTTTCCTTTTATCTC+TGG - chr3_1:85878425-85878444 None:intergenic 35.0%
TTCTTACTGAGAACATGTGA+CGG + chr3_1:85878802-85878821 Msa0383110:intron 35.0%
!!! AACATGTGACGGTTCTTTTT+TGG + chr3_1:85878813-85878832 Msa0383110:intron 35.0%
!!! CTCACAGTCTTTTCAAGTAA+AGG - chr3_1:85879111-85879130 None:intergenic 35.0%
! GGAGGAACATAATTTTCTGT+AGG - chr3_1:85879153-85879172 None:intergenic 35.0%
! GATTTTTCACCAAAATCTCC+AGG - chr3_1:85879187-85879206 None:intergenic 35.0%
TTCATGTAGTAACCTTTGTG+GGG + chr3_1:85879226-85879245 Msa0383110:three_prime_UTR 35.0%
TTTCCAAATCCCTACTGAAA+CGG + chr3_1:85879330-85879349 Msa0383110:three_prime_UTR 35.0%
TAATGTTATAGGTGGGGTGA+TGG + chr3_1:85875191-85875210 Msa0383110:five_prime_UTR 40.0%
AAACTAACTGGAGCTAGCAA+TGG + chr3_1:85875236-85875255 Msa0383110:exon 40.0%
ATAAGAGCTGGATTGTTGGA+AGG - chr3_1:85875285-85875304 None:intergenic 40.0%
!!! AGGAGCATTTGGTTTGGTTT+TGG - chr3_1:85875350-85875369 None:intergenic 40.0%
!! AGAAGGGATTTTGTGCTGTT+AGG + chr3_1:85875414-85875433 Msa0383110:CDS 40.0%
! ACAACATGCGTTCCTTTTTC+TGG + chr3_1:85875459-85875478 Msa0383110:CDS 40.0%
GCAAAGTCAGTCTCAATTGT+AGG - chr3_1:85875515-85875534 None:intergenic 40.0%
TATTCTGTCTTGTCTTGCAG+TGG + chr3_1:85875535-85875554 Msa0383110:intron 40.0%
ACTTCAACAAGACCCCAAAA+TGG + chr3_1:85875577-85875596 Msa0383110:CDS 40.0%
!!! CCCCAAAATGGCTTCTTTTT+TGG + chr3_1:85875589-85875608 Msa0383110:CDS 40.0%
!! TTTTAGAGGGAAGCTCAAGA+GGG - chr3_1:85875643-85875662 None:intergenic 40.0%
!! TTTTTAGAGGGAAGCTCAAG+AGG - chr3_1:85875644-85875663 None:intergenic 40.0%
CTACATGAAAGTGGGAAAAG+AGG - chr3_1:85875824-85875843 None:intergenic 40.0%
CTCTTCTCTCTACATGAAAG+TGG - chr3_1:85875833-85875852 None:intergenic 40.0%
GGCTTGTAGATTCTGTAGTA+AGG + chr3_1:85875855-85875874 Msa0383110:intron 40.0%
AAGGAGAGTAGATTAGATGG+AGG + chr3_1:85875874-85875893 Msa0383110:intron 40.0%
CTTATCCCATTAAGTGTGGT+CGG - chr3_1:85876002-85876021 None:intergenic 40.0%
GGCAAGAGAGAAAACAAAAC+AGG - chr3_1:85876059-85876078 None:intergenic 40.0%
TTCTCTCTTGCCATCCAAAA+AGG + chr3_1:85876067-85876086 Msa0383110:intron 40.0%
TAATGCTTTGGCCATAGATG+TGG + chr3_1:85876352-85876371 Msa0383110:intron 40.0%
AATGCTTTGGCCATAGATGT+GGG + chr3_1:85876353-85876372 Msa0383110:intron 40.0%
AAAACTTGCAGGCAACAAGA+GGG - chr3_1:85876430-85876449 None:intergenic 40.0%
GATAAACTCTTGCCTTGCAA+AGG - chr3_1:85876563-85876582 None:intergenic 40.0%
CAATCTCATCATTTCCGTCA+CGG + chr3_1:85876854-85876873 Msa0383110:CDS 40.0%
AGATTGAGGAAATACCGTGA+CGG - chr3_1:85876871-85876890 None:intergenic 40.0%
GAGGGCCTATCTGAATTTAA+TGG - chr3_1:85876957-85876976 None:intergenic 40.0%
! ATGGACTGCAAAAGATGTTG+TGG + chr3_1:85877014-85877033 Msa0383110:CDS 40.0%
ACAGACCAGAGAGTTAAGAA+TGG + chr3_1:85877369-85877388 Msa0383110:intron 40.0%
TCCAACTGTTTACGTCACAA+AGG + chr3_1:85877662-85877681 Msa0383110:intron 40.0%
ACCTTTGTGACGTAAACAGT+TGG - chr3_1:85877666-85877685 None:intergenic 40.0%
GGATTTACACTACAGATCAC+AGG - chr3_1:85877695-85877714 None:intergenic 40.0%
ATTGTCTCCTCACAGATTGA+AGG + chr3_1:85878040-85878059 Msa0383110:intron 40.0%
TACTTTGGACTTGTGACTGA+TGG + chr3_1:85878175-85878194 Msa0383110:intron 40.0%
GTTGTACAGTCTGAAGAATC+AGG + chr3_1:85878197-85878216 Msa0383110:intron 40.0%
CTGTTGAAGCAACATAATGC+CGG - chr3_1:85878229-85878248 None:intergenic 40.0%
!!! TTTTTTCCACTGTGGACTGA+GGG - chr3_1:85878576-85878595 None:intergenic 40.0%
AATCTCCAGGGATCTTTGTA+TGG - chr3_1:85879174-85879193 None:intergenic 40.0%
! ACAAAGATCCCTGGAGATTT+TGG + chr3_1:85879175-85879194 Msa0383110:CDS 40.0%
ACATGAATTTCACCCCACAA+AGG - chr3_1:85879241-85879260 None:intergenic 40.0%
AAGAGACAACCGTTTCAGTA+GGG - chr3_1:85879342-85879361 None:intergenic 40.0%
AAAGAGACAACCGTTTCAGT+AGG - chr3_1:85879343-85879362 None:intergenic 40.0%
ACTGAAACGGTTGTCTCTTT+AGG + chr3_1:85879343-85879362 Msa0383110:three_prime_UTR 40.0%
CTGAAACGGTTGTCTCTTTA+GGG + chr3_1:85879344-85879363 Msa0383110:three_prime_UTR 40.0%
!! TATAGGTGGGGTGATGGAAT+TGG + chr3_1:85875197-85875216 Msa0383110:five_prime_UTR 45.0%
TGGAATTGGAAATCGCGAAG+TGG + chr3_1:85875211-85875230 Msa0383110:five_prime_UTR 45.0%
GGATTACCCTCCTGAAGATA+AGG - chr3_1:85875323-85875342 None:intergenic 45.0%
!! GTTGGAAGGAGCATTTGGTT+TGG - chr3_1:85875356-85875375 None:intergenic 45.0%
!! GGATTGTTGGAAGGAGCATT+TGG - chr3_1:85875361-85875380 None:intergenic 45.0%
!! AGGGATTTTGTGCTGTTAGG+AGG + chr3_1:85875417-85875436 Msa0383110:CDS 45.0%
ATGTAGCCGACCACACTTAA+TGG + chr3_1:85875993-85876012 Msa0383110:intron 45.0%
TGTAGCCGACCACACTTAAT+GGG + chr3_1:85875994-85876013 Msa0383110:intron 45.0%
CACTAGTGATCCCACATCTA+TGG - chr3_1:85876366-85876385 None:intergenic 45.0%
AAACTTGCAGGCAACAAGAG+GGG - chr3_1:85876429-85876448 None:intergenic 45.0%
GAAAACTTGCAGGCAACAAG+AGG - chr3_1:85876431-85876450 None:intergenic 45.0%
AATTCCTTGCAGCTAATGCG+CGG + chr3_1:85876796-85876815 Msa0383110:intron 45.0%
! AGTAGCTATCGGGTATTGCT+CGG - chr3_1:85877134-85877153 None:intergenic 45.0%
TGCATCGAGAACTGAACTCT+CGG - chr3_1:85877779-85877798 None:intergenic 45.0%
AGATTGAAGGCGAACCTTAC+TGG + chr3_1:85878053-85878072 Msa0383110:intron 45.0%
GCTTCAACAGCAGAAAGAGA+TGG + chr3_1:85878239-85878258 Msa0383110:CDS 45.0%
TGACTCTGATTGAAGGGAAG+AGG - chr3_1:85878394-85878413 None:intergenic 45.0%
!!! CTTTTTTCCACTGTGGACTG+AGG - chr3_1:85878577-85878596 None:intergenic 45.0%
!!! GAGGGTACTTTTTTCCACTG+TGG - chr3_1:85878584-85878603 None:intergenic 45.0%
CTCTCTCTCTCTCTCTCATA+TGG + chr3_1:85878627-85878646 Msa0383110:intron 45.0%
TTCCTCCATACAAAGATCCC+TGG + chr3_1:85879166-85879185 Msa0383110:CDS 45.0%
CAACCGTTTCAGTAGGGATT+TGG - chr3_1:85879336-85879355 None:intergenic 45.0%
!! AAAATAATAAATATTTGTAT+TGG + chr3_1:85878464-85878483 Msa0383110:intron 5.0%
CGCGAAGTGGTGAAACTAAC+TGG + chr3_1:85875224-85875243 Msa0383110:five_prime_UTR 50.0%
!! AGCTTGTTGCCCGCTTAAAC+TGG + chr3_1:85876101-85876120 Msa0383110:intron 50.0%
GCAGCCGATGAATATCGTTC+TGG - chr3_1:85876512-85876531 None:intergenic 50.0%
! TAGCTATCGGGTATTGCTCG+GGG - chr3_1:85877132-85877151 None:intergenic 50.0%
! GTAGCTATCGGGTATTGCTC+GGG - chr3_1:85877133-85877152 None:intergenic 50.0%
GGGCACCATTCTTAACTCTC+TGG - chr3_1:85877377-85877396 None:intergenic 50.0%
GTTAAGAATGGTGCCCCACA+TGG + chr3_1:85877381-85877400 Msa0383110:intron 50.0%
ACATGCTCACGTGTCTGTGT+TGG - chr3_1:85877847-85877866 None:intergenic 50.0%
AGGTTCGCCTTCAATCTGTG+AGG - chr3_1:85878050-85878069 None:intergenic 50.0%
GAGAGAGAGAGAGAGAGAGA+GGG - chr3_1:85878602-85878621 None:intergenic 50.0%
AGAGAGAGAGAGAGAGAGAG+AGG - chr3_1:85878601-85878620 None:intergenic 50.0%
TAGACGCAGTTGATCAGTGG+CGG - chr3_1:85878739-85878758 None:intergenic 50.0%
AGCTAGACGCAGTTGATCAG+TGG - chr3_1:85878742-85878761 None:intergenic 50.0%
CTCCAGGGATCTTTGTATGG+AGG - chr3_1:85879171-85879190 None:intergenic 50.0%
TGTCTTGCAGTGGCTCTTGC+TGG + chr3_1:85875545-85875564 Msa0383110:intron 55.0%
TGCCATCCAAAAAGGCCCAG+CGG + chr3_1:85876075-85876094 Msa0383110:intron 55.0%
! ATCAGTGGCGGAGGAAATGC+TGG - chr3_1:85878727-85878746 None:intergenic 55.0%
!! ACTGAGGGTCGAAGCGCTGA+TGG - chr3_1:85878561-85878580 None:intergenic 60.0%
CTTCGACCCTCAGTCCACAG+TGG + chr3_1:85878567-85878586 Msa0383110:CDS 60.0%
ACGCAGTTGATCAGTGGCGG+AGG - chr3_1:85878736-85878755 None:intergenic 60.0%
! CGCCGCTGGGCCTTTTTGGA+TGG - chr3_1:85876080-85876099 None:intergenic 65.0%
GCAGCCGCGCATTAGCTGCA+AGG - chr3_1:85876803-85876822 None:intergenic 65.0%
!! CTCGGCTGAGCGCTGAACTG+AGG - chr3_1:85877761-85877780 None:intergenic 65.0%
! GCTGCGCCGCTGGGCCTTTT+TGG - chr3_1:85876084-85876103 None:intergenic 70.0%
GGGCAACAAGCTGCGCCGCT+GGG - chr3_1:85876093-85876112 None:intergenic 70.0%
CGGGCAACAAGCTGCGCCGC+TGG - chr3_1:85876094-85876113 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr3_1 gene 85875191 85879435 85875191 ID=Msa0383110;Name=Msa0383110
chr3_1 mRNA 85875191 85879435 85875191 ID=Msa0383110-mRNA-1;Parent=Msa0383110;Name=Msa0383110-mRNA-1;_AED=0.18;_eAED=0.18;_QI=64|1|1|1|1|1|10|235|296
chr3_1 exon 85875191 85875480 85875191 ID=Msa0383110-mRNA-1:exon:22612;Parent=Msa0383110-mRNA-1
chr3_1 exon 85875555 85875678 85875555 ID=Msa0383110-mRNA-1:exon:22613;Parent=Msa0383110-mRNA-1
chr3_1 exon 85876493 85876542 85876493 ID=Msa0383110-mRNA-1:exon:22614;Parent=Msa0383110-mRNA-1
chr3_1 exon 85876808 85876875 85876808 ID=Msa0383110-mRNA-1:exon:22615;Parent=Msa0383110-mRNA-1
chr3_1 exon 85876967 85877065 85876967 ID=Msa0383110-mRNA-1:exon:22616;Parent=Msa0383110-mRNA-1
chr3_1 exon 85877751 85877810 85877751 ID=Msa0383110-mRNA-1:exon:22617;Parent=Msa0383110-mRNA-1
chr3_1 exon 85878055 85878114 85878055 ID=Msa0383110-mRNA-1:exon:22618;Parent=Msa0383110-mRNA-1
chr3_1 exon 85878206 85878260 85878206 ID=Msa0383110-mRNA-1:exon:22619;Parent=Msa0383110-mRNA-1
chr3_1 exon 85878546 85878595 85878546 ID=Msa0383110-mRNA-1:exon:22620;Parent=Msa0383110-mRNA-1
chr3_1 exon 85879102 85879435 85879102 ID=Msa0383110-mRNA-1:exon:22621;Parent=Msa0383110-mRNA-1
chr3_1 five_prime_UTR 85875191 85875254 85875191 ID=Msa0383110-mRNA-1:five_prime_utr;Parent=Msa0383110-mRNA-1
chr3_1 CDS 85875255 85875480 85875255 ID=Msa0383110-mRNA-1:cds;Parent=Msa0383110-mRNA-1
chr3_1 CDS 85875555 85875678 85875555 ID=Msa0383110-mRNA-1:cds;Parent=Msa0383110-mRNA-1
chr3_1 CDS 85876493 85876542 85876493 ID=Msa0383110-mRNA-1:cds;Parent=Msa0383110-mRNA-1
chr3_1 CDS 85876808 85876875 85876808 ID=Msa0383110-mRNA-1:cds;Parent=Msa0383110-mRNA-1
chr3_1 CDS 85876967 85877065 85876967 ID=Msa0383110-mRNA-1:cds;Parent=Msa0383110-mRNA-1
chr3_1 CDS 85877751 85877810 85877751 ID=Msa0383110-mRNA-1:cds;Parent=Msa0383110-mRNA-1
chr3_1 CDS 85878055 85878114 85878055 ID=Msa0383110-mRNA-1:cds;Parent=Msa0383110-mRNA-1
chr3_1 CDS 85878206 85878260 85878206 ID=Msa0383110-mRNA-1:cds;Parent=Msa0383110-mRNA-1
chr3_1 CDS 85878546 85878595 85878546 ID=Msa0383110-mRNA-1:cds;Parent=Msa0383110-mRNA-1
chr3_1 CDS 85879102 85879200 85879102 ID=Msa0383110-mRNA-1:cds;Parent=Msa0383110-mRNA-1
chr3_1 three_prime_UTR 85879201 85879435 85879201 ID=Msa0383110-mRNA-1:three_prime_utr;Parent=Msa0383110-mRNA-1
Gene Sequence

>Msa0383110

ATGGTTTTACACTCTCTATGGCTATGTCCTTCCAACAATCCAGCTCTTATTCTTCCCAATAACAACCTTATCTTCAGGAGGGTAATCCTTAACCAAAACCAAACCAAATGCTCCTTCCAACAATCCGATGATAAAAGAGATTTTTCATCATCTTCTTCTAGAAGGGATTTTGTGCTGTTAGGAGGCCTCACTTCACTATCTCTAACAACATGCGTTCCTTTTTCTGTGGCTCTTGCTGGAGATGAAGAACTTCAACAAGACCCCAAAATGGCTTCTTTTTTGGATGAAGTCAATGCCTATTCTTATCTTTACCCTCTTGAGCTTCCCTCTAAAAATTTTGTCTTCAAATGGGTAGAATCTCGAAAGCCAGAACGATATTCATCGGCTGCACCACTTTCTCCTAATGCGCGGCTGCGTATTGTGTCTGAACGTGTTGATCTCTTTGACAATCTCATCATTTCCGTCACGATAGGCCCTCCAAGTGCAAACCTTATAAACTTGAAGGATAAGAGCAAATGGACTGCAAAAGATGTTGTGGATTCAGTTTTAGCTGACAAATCTTCACTGCGAGTTACCTCAGTTCAGCGCTCAGCCGAGAGTTCAGTTCTCGATGCACATTCTGATGAAATTGAAGGCGAACCTTACTGGTATTATGAATACCTCATTCGTAAATCACCTAATTCAATGTCTGAAGAATCAGGAATTTACCGGCATTATGTTGCTTCAACAGCAGAAAGAGATGGTTATTTGTACTCCATCAGCGCTTCGACCCTCAGTCCACAGTGGAAAAAAATGGGGCCTTTACTTGAAAAGACTGTGAGTTCGTTTCGACTTGTCAGTCCTACAGAAAATTATGTTCCTCCATACAAAGATCCCTGGAGATTTTGGTGA

Protein sequence

>Msa0383110

MVLHSLWLCPSNNPALILPNNNLIFRRVILNQNQTKCSFQQSDDKRDFSSSSSRRDFVLLGGLTSLSLTTCVPFSVALAGDEELQQDPKMASFLDEVNAYSYLYPLELPSKNFVFKWVESRKPERYSSAAPLSPNARLRIVSERVDLFDNLIISVTIGPPSANLINLKDKSKWTAKDVVDSVLADKSSLRVTSVQRSAESSVLDAHSDEIEGEPYWYYEYLIRKSPNSMSEESGIYRHYVASTAERDGYLYSISASTLSPQWKKMGPLLEKTVSSFRLVSPTENYVPPYKDPWRFW*