Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1275070 | sp|O74452|SCW1_SCHPO | 30.612 | 98 | 68 | 0 | 105 | 202 | 408 | 505 | 9.22e-14 | 72.4 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1275070 | I3S8G5 | 92.965 | 199 | 7 | 1 | 8 | 206 | 77 | 268 | 2.79e-128 | 371 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0073670 | Msa1275070 | 0.812142 | 4.920752e-51 | -8.615850e-47 |
| Msa0610390 | Msa1275070 | 0.806025 | 1.004842e-49 | -8.615850e-47 |
| Msa0620990 | Msa1275070 | 0.804286 | 2.323065e-49 | -8.615850e-47 |
| Msa0650920 | Msa1275070 | 0.806790 | 6.933095e-50 | -8.615850e-47 |
| Msa0692940 | Msa1275070 | 0.809229 | 2.097563e-50 | -8.615850e-47 |
| Msa0718740 | Msa1275070 | 0.824893 | 6.306813e-54 | -8.615850e-47 |
| Msa0750920 | Msa1275070 | 0.807639 | 4.581014e-50 | -8.615850e-47 |
| Msa0805500 | Msa1275070 | 0.804236 | 2.380403e-49 | -8.615850e-47 |
| Msa0165950 | Msa1275070 | 0.812027 | 5.210847e-51 | -8.615850e-47 |
| Msa0167480 | Msa1275070 | 0.801379 | 9.255987e-49 | -8.615850e-47 |
| Msa0194540 | Msa1275070 | 0.801993 | 6.927044e-49 | -8.615850e-47 |
| Msa0226460 | Msa1275070 | 0.819106 | 1.382227e-52 | -8.615850e-47 |
| Msa1227690 | Msa1275070 | 0.802346 | 5.861094e-49 | -8.615850e-47 |
| Msa1270620 | Msa1275070 | 0.802168 | 6.376603e-49 | -8.615850e-47 |
| Msa1275070 | Msa1335940 | 0.831490 | 1.620798e-55 | -8.615850e-47 |
| Msa1275070 | Msa1442850 | 0.805872 | 1.082450e-49 | -8.615850e-47 |
| Msa0392940 | Msa1275070 | 0.822421 | 2.389974e-53 | -8.615850e-47 |
| Msa0416400 | Msa1275070 | 0.805209 | 1.490683e-49 | -8.615850e-47 |
| Msa1019240 | Msa1275070 | 0.815250 | 1.018117e-51 | -8.615850e-47 |
| Msa1019260 | Msa1275070 | 0.803190 | 3.924303e-49 | -8.615850e-47 |
| Msa1104210 | Msa1275070 | 0.804983 | 1.661996e-49 | -8.615850e-47 |
| Msa0244780 | Msa1275070 | 0.801515 | 8.682330e-49 | -8.615850e-47 |
| Msa0259160 | Msa1275070 | 0.811541 | 6.648394e-51 | -8.615850e-47 |
| Msa0280430 | Msa1275070 | 0.802621 | 5.142465e-49 | -8.615850e-47 |
| Msa1166870 | Msa1275070 | 0.802760 | 4.814934e-49 | -8.615850e-47 |
| Msa1179980 | Msa1275070 | 0.807354 | 5.266618e-50 | -8.615850e-47 |
| Msa1192850 | Msa1275070 | 0.801535 | 8.602335e-49 | -8.615850e-47 |
| Msa0571920 | Msa1275070 | 0.824447 | 8.034073e-54 | -8.615850e-47 |
| Msa0576940 | Msa1275070 | 0.807827 | 4.178548e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1275070 | MtrunA17_Chr8g0341911 | 92.965 | 199 | 7 | 1 | 8 | 206 | 77 | 268 | 5.38e-132 | 371 |
| Msa1275070 | MtrunA17_Chr5g0401861 | 36.364 | 209 | 120 | 6 | 5 | 206 | 135 | 337 | 2.08e-28 | 108 |
| Msa1275070 | MtrunA17_Chr4g0000521 | 30.729 | 192 | 126 | 3 | 12 | 197 | 94 | 284 | 7.48e-19 | 82.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1275070 | AT3G13700.2 | 57.005 | 207 | 78 | 3 | 3 | 205 | 88 | 287 | 2.74e-69 | 213 |
| Msa1275070 | AT3G13700.1 | 56.061 | 198 | 76 | 3 | 3 | 196 | 106 | 296 | 1.04e-62 | 197 |
| Msa1275070 | AT2G42240.1 | 34.518 | 197 | 109 | 6 | 13 | 205 | 110 | 290 | 1.42e-24 | 98.2 |
| Msa1275070 | AT2G42240.3 | 32.990 | 194 | 113 | 4 | 13 | 205 | 110 | 287 | 2.67e-22 | 92.0 |
| Msa1275070 | AT2G42240.4 | 32.778 | 180 | 104 | 4 | 13 | 191 | 110 | 273 | 1.27e-20 | 87.8 |
| Msa1275070 | AT3G21215.2 | 26.887 | 212 | 128 | 3 | 11 | 206 | 116 | 316 | 8.53e-18 | 80.5 |
| Msa1275070 | AT3G21215.1 | 26.887 | 212 | 128 | 3 | 11 | 206 | 116 | 316 | 8.53e-18 | 80.5 |
| Msa1275070 | AT3G21215.4 | 26.887 | 212 | 128 | 3 | 11 | 206 | 116 | 316 | 8.53e-18 | 80.5 |
| Msa1275070 | AT3G21215.3 | 27.586 | 203 | 120 | 3 | 11 | 197 | 116 | 307 | 5.86e-17 | 77.8 |
Find 62 sgRNAs with CRISPR-Local
Find 356 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AATTGGAGCTAGACCATTTC+TGG | 0.137577 | 8_3:-8925225 | Msa1275070:three_prime_UTR |
| TAGACCATTTCTGGATAATT+TGG | 0.144882 | 8_3:-8925216 | Msa1275070:three_prime_UTR |
| TAATTTGGGTTCGATATAAA+AGG | 0.242645 | 8_3:-8925201 | Msa1275070:three_prime_UTR |
| AATTCATCCTCAGTGCAATT+TGG | 0.243699 | 8_3:+8927221 | None:intergenic |
| TAAGGTCATGGAGGAGCTTC+AGG | 0.289671 | 8_3:-8925426 | Msa1275070:CDS |
| GAAGAAGCGATAGAATAAAT+TGG | 0.314995 | 8_3:-8925242 | Msa1275070:exon |
| CCTGATGAACCATCAGAAAA+TGG | 0.346172 | 8_3:-8927775 | Msa1275070:CDS |
| CTACAAATAGTAGGATTTGA+TGG | 0.357804 | 8_3:-8922970 | Msa1275070:three_prime_UTR |
| AGACCATTTCTGGATAATTT+GGG | 0.374031 | 8_3:-8925215 | Msa1275070:three_prime_UTR |
| CATGGAAAGGGTGGTGGTGA+TGG | 0.399811 | 8_3:-8927281 | Msa1275070:CDS |
| GGAAATTGATCAAGCTGTTA+AGG | 0.400523 | 8_3:-8925444 | Msa1275070:CDS |
| GTGAAATTTGATCCTCAATC+TGG | 0.405302 | 8_3:-8928760 | Msa1275070:CDS |
| CATTTGATTCTACAAATAGT+AGG | 0.408173 | 8_3:-8922979 | Msa1275070:three_prime_UTR |
| CTCACTTCCATCATCAGATC+GGG | 0.427394 | 8_3:-8925399 | Msa1275070:CDS |
| GAACCCAAATTATCCAGAAA+TGG | 0.432407 | 8_3:+8925212 | None:intergenic |
| GTTGCAATTTATAGAAAGGT+TGG | 0.433509 | 8_3:-8925155 | Msa1275070:three_prime_UTR |
| AGTAGTTGCAATTTATAGAA+AGG | 0.437422 | 8_3:-8925159 | Msa1275070:three_prime_UTR |
| TGCAGTGGTGATGCAGTTGT+TGG | 0.438652 | 8_3:-8927565 | Msa1275070:intron |
| CAGGTATGCTGGATTCAACT+TGG | 0.444244 | 8_3:-8927023 | Msa1275070:CDS |
| TTGGTCAAAATGCGTTCTAA+AGG | 0.499920 | 8_3:-8927004 | Msa1275070:CDS |
| GCTGCAGGCGCAACATGGAA+AGG | 0.500643 | 8_3:-8927294 | Msa1275070:intron |
| GTTATAGACAAAAGGTCAAA+GGG | 0.504204 | 8_3:-8928075 | Msa1275070:CDS |
| TATAAATTGCAACTACTCAG+AGG | 0.512598 | 8_3:+8925165 | None:intergenic |
| CTTACGTGGTTATAGACAAA+AGG | 0.513386 | 8_3:-8928083 | Msa1275070:CDS |
| ATTGATTCTAACAGATTACA+TGG | 0.515375 | 8_3:+8925077 | None:intergenic |
| CTGCAGGCGCAACATGGAAA+GGG | 0.524926 | 8_3:-8927293 | Msa1275070:intron |
| CAGGGATCGTCAAGTGATGA+TGG | 0.525770 | 8_3:-8928039 | Msa1275070:CDS |
| TGATCAAGCTGTTAAGGTCA+TGG | 0.532925 | 8_3:-8925438 | Msa1275070:CDS |
| TCAAAATCAGCAAATGCTAC+AGG | 0.533143 | 8_3:+8926974 | None:intergenic |
| TGTAAAACAGATCCAGATTG+AGG | 0.545441 | 8_3:+8928748 | None:intergenic |
| AAGGTCATGGAGGAGCTTCA+GGG | 0.546307 | 8_3:-8925425 | Msa1275070:CDS |
| AATCGGCTGCAGGCGCAACA+TGG | 0.547007 | 8_3:-8927299 | Msa1275070:intron |
| GTCAAAATGCGTTCTAAAGG+AGG | 0.552713 | 8_3:-8927001 | Msa1275070:CDS |
| CAATCATGTACCTGTGGCAA+GGG | 0.555256 | 8_3:-8927536 | Msa1275070:intron |
| GCGCAACATGGAAAGGGTGG+TGG | 0.556233 | 8_3:-8927287 | Msa1275070:CDS |
| GCTCACTTCCATCATCAGAT+CGG | 0.556758 | 8_3:-8925400 | Msa1275070:CDS |
| GTTTCACTTACCCTTGCCAC+AGG | 0.559329 | 8_3:+8927526 | None:intergenic |
| CTTCCTCCTAGAGTTTGACC+TGG | 0.571465 | 8_3:+8928714 | None:intergenic |
| GGAAAGGGTGGTGGTGATGG+AGG | 0.572070 | 8_3:-8927278 | Msa1275070:CDS |
| GTGTGGTTGCTATATCGCCA+TGG | 0.573485 | 8_3:+8927746 | None:intergenic |
| GGTTATAGACAAAAGGTCAA+AGG | 0.575627 | 8_3:-8928076 | Msa1275070:CDS |
| TCTAGGAGGAAGCGAAAACC+AGG | 0.576283 | 8_3:-8928703 | Msa1275070:intron |
| ACAATCATGTACCTGTGGCA+AGG | 0.578619 | 8_3:-8927537 | Msa1275070:CDS |
| CATAGGTGGTGGAGCTTACG+TGG | 0.578867 | 8_3:-8928097 | Msa1275070:intron |
| TCAGAAAATGGCAGCAACCA+TGG | 0.594229 | 8_3:-8927763 | Msa1275070:CDS |
| TTGCATTCTCAACCTTTGTG+TGG | 0.595541 | 8_3:+8927729 | None:intergenic |
| GATATGCAAGGTCTAGAATG+AGG | 0.599057 | 8_3:-8925264 | Msa1275070:CDS |
| AACTTGCCAGGTCAAACTCT+AGG | 0.601931 | 8_3:-8928720 | Msa1275070:CDS |
| ATAAATTGCAACTACTCAGA+GGG | 0.606376 | 8_3:+8925166 | None:intergenic |
| ACTTGACGATCCCTGAACAT+TGG | 0.608200 | 8_3:+8928047 | None:intergenic |
| TTGTGCTCTCTAGATATGCA+AGG | 0.608779 | 8_3:-8925276 | Msa1275070:intron |
| CAGGCGCAACATGGAAAGGG+TGG | 0.610590 | 8_3:-8927290 | Msa1275070:CDS |
| ATGCCACCCCGATCTGATGA+TGG | 0.624186 | 8_3:+8925392 | None:intergenic |
| TTGCCAGGTCAAACTCTAGG+AGG | 0.643601 | 8_3:-8928717 | Msa1275070:CDS |
| GCGATATAGCAACCACACAA+AGG | 0.664298 | 8_3:-8927741 | Msa1275070:intron |
| TTCTGACAATCATGTACCTG+TGG | 0.692212 | 8_3:-8927542 | Msa1275070:CDS |
| CTTCCATCATCAGATCGGGG+TGG | 0.703733 | 8_3:-8925395 | Msa1275070:CDS |
| TCACTTCCATCATCAGATCG+GGG | 0.706058 | 8_3:-8925398 | Msa1275070:CDS |
| TATAGACAAAAGGTCAAAGG+GGG | 0.725944 | 8_3:-8928073 | Msa1275070:CDS |
| TCAAGCTGTTAAGGTCATGG+AGG | 0.728292 | 8_3:-8925435 | Msa1275070:CDS |
| TTATAGACAAAAGGTCAAAG+GGG | 0.750598 | 8_3:-8928074 | Msa1275070:CDS |
| TCTTGGTCCAAATTGCACTG+AGG | 0.771560 | 8_3:-8927228 | Msa1275070:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAATAAATAATAAATAAAT+TGG | + | chr8_3:8923206-8923225 | None:intergenic | 0.0% |
| !!! | TTATTTATTTTGATGAATTA+TGG | - | chr8_3:8923215-8923234 | Msa1275070:intron | 10.0% |
| !!! | CAAACTAATATATAATTTTA+CGG | - | chr8_3:8923549-8923568 | Msa1275070:intron | 10.0% |
| !!! | ACAGAAATTTTTAAATAATT+TGG | - | chr8_3:8924957-8924976 | Msa1275070:intron | 10.0% |
| !!! | TGTTAAAAAAAACTTTTTAT+CGG | - | chr8_3:8925277-8925296 | Msa1275070:intron | 10.0% |
| !!! | AATTTTAATGATCATATAAT+AGG | - | chr8_3:8925370-8925389 | Msa1275070:intron | 10.0% |
| !! | TAATTAAAATTATAAGAATG+TGG | - | chr8_3:8925970-8925989 | Msa1275070:intron | 10.0% |
| !!! | GAAATCTTTAATAATTTTTT+TGG | + | chr8_3:8928033-8928052 | None:intergenic | 10.0% |
| !!! | TTTTTGAATTATAAAATACA+TGG | + | chr8_3:8928390-8928409 | None:intergenic | 10.0% |
| !!! | AATATATCTTTTTTATTGTC+AGG | - | chr8_3:8922919-8922938 | Msa1275070:three_prime_UTR | 15.0% |
| !!! | ATATATCTTTTTTATTGTCA+GGG | - | chr8_3:8922920-8922939 | Msa1275070:three_prime_UTR | 15.0% |
| !! | GAAAAAAAAAAAAATATACG+AGG | - | chr8_3:8923058-8923077 | Msa1275070:intron | 15.0% |
| !! | AAATAATTTGAAGGAAAAAA+AGG | + | chr8_3:8923169-8923188 | None:intergenic | 15.0% |
| !! | CGTAAAATTATATATTAGTT+TGG | + | chr8_3:8923551-8923570 | None:intergenic | 15.0% |
| !!! | AATTTTGAATTTTTTAGGTA+TGG | + | chr8_3:8924020-8924039 | None:intergenic | 15.0% |
| !!! | TGCATAATTTTGAATTTTTT+AGG | + | chr8_3:8924025-8924044 | None:intergenic | 15.0% |
| !!! | TAGTTTTCAAAATTTTCAAT+TGG | - | chr8_3:8924085-8924104 | Msa1275070:intron | 15.0% |
| !!! | ATATTATGATGTTTTCAAAT+CGG | - | chr8_3:8924388-8924407 | Msa1275070:intron | 15.0% |
| !!! | CATAAGTTTAAAACATTTTT+CGG | - | chr8_3:8925754-8925773 | Msa1275070:intron | 15.0% |
| !!! | ATAAGTTTAAAACATTTTTC+GGG | - | chr8_3:8925755-8925774 | Msa1275070:intron | 15.0% |
| !!! | CAATTGTTATTTGATAAATT+TGG | + | chr8_3:8926186-8926205 | None:intergenic | 15.0% |
| !!! | TTTTTTATGAGAAAAAGTTT+AGG | - | chr8_3:8926991-8927010 | Msa1275070:CDS | 15.0% |
| !! | ATAAATATATAATATCAACG+TGG | - | chr8_3:8927271-8927290 | Msa1275070:CDS | 15.0% |
| !! | TAAATATATAATATCAACGT+GGG | - | chr8_3:8927272-8927291 | Msa1275070:CDS | 15.0% |
| !! | TCATATTCCTAAATAAATTA+TGG | - | chr8_3:8928108-8928127 | Msa1275070:intron | 15.0% |
| !! | TAACAAACCATAATTTATTT+AGG | + | chr8_3:8928118-8928137 | None:intergenic | 15.0% |
| !! | AACTTATATTTGTTTCATAA+TGG | - | chr8_3:8928658-8928677 | Msa1275070:intron | 15.0% |
| !! | AAAAAAAAATATACGAGGAA+TGG | - | chr8_3:8923063-8923082 | Msa1275070:intron | 20.0% |
| !! | ATGGAAGAAAAATAATTTGA+AGG | + | chr8_3:8923178-8923197 | None:intergenic | 20.0% |
| !!! | AATGTGTTTTATACTATGTT+CGG | - | chr8_3:8923246-8923265 | Msa1275070:intron | 20.0% |
| !! | GGTTATATTAGAATTTAAGT+AGG | - | chr8_3:8923823-8923842 | Msa1275070:intron | 20.0% |
| !! | ATTAGAATTTAAGTAGGAAA+AGG | - | chr8_3:8923829-8923848 | Msa1275070:intron | 20.0% |
| !! | TTAACCAATATACTTATTGT+AGG | - | chr8_3:8924882-8924901 | Msa1275070:intron | 20.0% |
| !! | TGATGTAATTTATATGAACT+TGG | - | chr8_3:8925097-8925116 | Msa1275070:three_prime_UTR | 20.0% |
| !! | TCCTACATAACATTATTAAT+TGG | - | chr8_3:8925150-8925169 | Msa1275070:three_prime_UTR | 20.0% |
| !! | ACCAATTAATAATGTTATGT+AGG | + | chr8_3:8925154-8925173 | None:intergenic | 20.0% |
| !! | ATTACATTGATGTAATACTT+AGG | - | chr8_3:8925243-8925262 | Msa1275070:exon | 20.0% |
| !!! | AACATTGAATTTTGTCATAA+AGG | + | chr8_3:8925306-8925325 | None:intergenic | 20.0% |
| !! | TTACATATTTCAATGACTAT+TGG | - | chr8_3:8925448-8925467 | Msa1275070:intron | 20.0% |
| !!! | TCTTTTAAATAAATGCTGAA+TGG | + | chr8_3:8926071-8926090 | None:intergenic | 20.0% |
| !!! | TAGAGTATTTTCTAAACTAA+TGG | - | chr8_3:8926340-8926359 | Msa1275070:intron | 20.0% |
| !!! | AGAGTATTTTCTAAACTAAT+GGG | - | chr8_3:8926341-8926360 | Msa1275070:intron | 20.0% |
| !!! | AAATAGAATTAAGATTAGCT+TGG | + | chr8_3:8926865-8926884 | None:intergenic | 20.0% |
| !! | AGAAAAAGTTTAGGTAATTT+GGG | - | chr8_3:8927000-8927019 | Msa1275070:CDS | 20.0% |
| !! | AATCAAGATTTGAATTTGAT+TGG | - | chr8_3:8927335-8927354 | Msa1275070:intron | 20.0% |
| !! | ATCAAGATTTGAATTTGATT+GGG | - | chr8_3:8927336-8927355 | Msa1275070:intron | 20.0% |
| !! | TCTTAAAATTAAGAATGCTA+AGG | + | chr8_3:8927776-8927795 | None:intergenic | 20.0% |
| !! | TTAAGGTTATTAAATTGGAA+CGG | - | chr8_3:8927799-8927818 | Msa1275070:intron | 20.0% |
| !!! | ATTTGCAAATCTTCTAAAAT+AGG | + | chr8_3:8927936-8927955 | None:intergenic | 20.0% |
| !! | TAAAATTTGGCTATGAATAT+TGG | - | chr8_3:8928262-8928281 | Msa1275070:intron | 20.0% |
| !! | AAATGAAAAAGTAGACATAT+AGG | + | chr8_3:8928710-8928729 | None:intergenic | 20.0% |
| ! | GTATATATGTTATGCATGAT+TGG | - | chr8_3:8923023-8923042 | Msa1275070:intron | 25.0% |
| ! | ATTTGAAGGAAAAAAAGGAA+TGG | + | chr8_3:8923164-8923183 | None:intergenic | 25.0% |
| ! | AATAAATAAATTGGCGAGAA+TGG | + | chr8_3:8923197-8923216 | None:intergenic | 25.0% |
| !! | ATGTGTTTTATACTATGTTC+GGG | - | chr8_3:8923247-8923266 | Msa1275070:intron | 25.0% |
| ! | AGTGTTTATTCAATATGTGT+TGG | + | chr8_3:8923286-8923305 | None:intergenic | 25.0% |
| !! | TATAATTTTACGGTTTTTCC+AGG | - | chr8_3:8923559-8923578 | Msa1275070:intron | 25.0% |
| ! | AATAAAACCACTAATTATCC+TGG | + | chr8_3:8923580-8923599 | None:intergenic | 25.0% |
| ! | TTTCTTTCATTACAAGTTCA+AGG | - | chr8_3:8923693-8923712 | Msa1275070:intron | 25.0% |
| ! | ATTAGCAATATGTTGGAAAT+TGG | - | chr8_3:8924206-8924225 | Msa1275070:intron | 25.0% |
| ! | ATATGACATAAGTACTTAAG+GGG | + | chr8_3:8924366-8924385 | None:intergenic | 25.0% |
| ! | CATATGACATAAGTACTTAA+GGG | + | chr8_3:8924367-8924386 | None:intergenic | 25.0% |
| ! | ACATATGACATAAGTACTTA+AGG | + | chr8_3:8924368-8924387 | None:intergenic | 25.0% |
| ! | AAGATTTGCAATAAAAAGAG+TGG | + | chr8_3:8924460-8924479 | None:intergenic | 25.0% |
| !! | ACTCTTTTTATTGCAAATCT+TGG | - | chr8_3:8924459-8924478 | Msa1275070:intron | 25.0% |
| !!! | CTGCTTCTATTTTTTATTCA+TGG | - | chr8_3:8924532-8924551 | Msa1275070:intron | 25.0% |
| ! | GATTTAGATTTAACAAGAAC+AGG | + | chr8_3:8924599-8924618 | None:intergenic | 25.0% |
| ! | AATTAGATGATGAACAATGT+AGG | + | chr8_3:8924621-8924640 | None:intergenic | 25.0% |
| ! | GTATCCTACAATAAGTATAT+TGG | + | chr8_3:8924889-8924908 | None:intergenic | 25.0% |
| ! | TAAAGATCTAATGATCCAAT+GGG | + | chr8_3:8924929-8924948 | None:intergenic | 25.0% |
| ! | ATAAAGATCTAATGATCCAA+TGG | + | chr8_3:8924930-8924949 | None:intergenic | 25.0% |
| ! | AGTTAACCATTAACAATTTG+AGG | - | chr8_3:8925558-8925577 | Msa1275070:intron | 25.0% |
| ! | GTTAACCATTAACAATTTGA+GGG | - | chr8_3:8925559-8925578 | Msa1275070:intron | 25.0% |
| !!! | GGGAATTTTGATTTTCATAT+TGG | - | chr8_3:8925775-8925794 | Msa1275070:intron | 25.0% |
| ! | AGGTGCAAAAAAATATCAAT+TGG | - | chr8_3:8925895-8925914 | Msa1275070:intron | 25.0% |
| !!! | GATTTTTTTGTCAGTTATGT+TGG | - | chr8_3:8926371-8926390 | Msa1275070:intron | 25.0% |
| !! | TAATTTGGGTTCGATATAAA+AGG | - | chr8_3:8926503-8926522 | Msa1275070:intron | 25.0% |
| ! | AGTAGTTGCAATTTATAGAA+AGG | - | chr8_3:8926545-8926564 | Msa1275070:intron | 25.0% |
| !! | CTCATTTTGTAAATTGCAAA+TGG | + | chr8_3:8926584-8926603 | None:intergenic | 25.0% |
| !! | ATTGATTCTAACAGATTACA+TGG | + | chr8_3:8926630-8926649 | None:intergenic | 25.0% |
| ! | TAATCTGTTAGAATCAATTG+AGG | - | chr8_3:8926632-8926651 | Msa1275070:intron | 25.0% |
| ! | AATCTGTTAGAATCAATTGA+GGG | - | chr8_3:8926633-8926652 | Msa1275070:intron | 25.0% |
| ! | GAGAAAAAGTTTAGGTAATT+TGG | - | chr8_3:8926999-8927018 | Msa1275070:CDS | 25.0% |
| ! | TAGGAAGTAATCATATTCAA+GGG | + | chr8_3:8927390-8927409 | None:intergenic | 25.0% |
| ! | ATAGGAAGTAATCATATTCA+AGG | + | chr8_3:8927391-8927410 | None:intergenic | 25.0% |
| ! | TTATATGTTTCTTCACTCAT+AGG | + | chr8_3:8927409-8927428 | None:intergenic | 25.0% |
| ! | CTTTCAAAATTATGTGTACA+CGG | - | chr8_3:8927591-8927610 | Msa1275070:intron | 25.0% |
| ! | ATAAATCTATTGACATCGTA+TGG | + | chr8_3:8927691-8927710 | None:intergenic | 25.0% |
| !!! | TCTTAATTTTAAGACGCTTA+AGG | - | chr8_3:8927782-8927801 | Msa1275070:CDS | 25.0% |
| !! | GGATATAGACTTTGTTTAAA+TGG | + | chr8_3:8927878-8927897 | None:intergenic | 25.0% |
| !!! | TTTTTGGCTCTAATCAAATT+AGG | + | chr8_3:8928017-8928036 | None:intergenic | 25.0% |
| ! | ACATTACAAACGAAAGTAAT+CGG | + | chr8_3:8928055-8928074 | None:intergenic | 25.0% |
| ! | AAACCTAAGTGTTAAAGTTT+GGG | + | chr8_3:8928330-8928349 | None:intergenic | 25.0% |
| ! | AAAACCTAAGTGTTAAAGTT+TGG | + | chr8_3:8928331-8928350 | None:intergenic | 25.0% |
| ! | AAATACGTGAATTGTTGATA+GGG | - | chr8_3:8928415-8928434 | Msa1275070:intron | 25.0% |
| !!! | AAAGACATTTTGGAACAAAT+TGG | + | chr8_3:8928484-8928503 | None:intergenic | 25.0% |
| ! | TATAAGTTTACATGTTGTAG+AGG | + | chr8_3:8928646-8928665 | None:intergenic | 25.0% |
| ! | CATTTGATTCTACAAATAGT+AGG | - | chr8_3:8928725-8928744 | Msa1275070:CDS | 25.0% |
| ! | TTTTACATATTGAACTTGCC+AGG | - | chr8_3:8922972-8922991 | Msa1275070:three_prime_UTR | 30.0% |
| TCATGCATAACATATATACC+TGG | + | chr8_3:8923022-8923041 | None:intergenic | 30.0% | |
| ATATGTTATGCATGATTGGT+AGG | - | chr8_3:8923027-8923046 | Msa1275070:intron | 30.0% | |
| ! | AAAGCATTTGTGTAAGTTCT+TGG | + | chr8_3:8923483-8923502 | None:intergenic | 30.0% |
| !!! | TGGTTTTATTTTGCATGCAT+AGG | - | chr8_3:8923590-8923609 | Msa1275070:intron | 30.0% |
| !!! | TTTTATTTTGCATGCATAGG+TGG | - | chr8_3:8923593-8923612 | Msa1275070:intron | 30.0% |
| GTTATAGACAAAAGGTCAAA+GGG | - | chr8_3:8923629-8923648 | Msa1275070:intron | 30.0% | |
| TTATAGACAAAAGGTCAAAG+GGG | - | chr8_3:8923630-8923649 | Msa1275070:intron | 30.0% | |
| TCTGAATGACTATGATGATA+TGG | - | chr8_3:8923735-8923754 | Msa1275070:intron | 30.0% | |
| TATAACCCACCAAATTGAAA+GGG | + | chr8_3:8923810-8923829 | None:intergenic | 30.0% | |
| ATATAACCCACCAAATTGAA+AGG | + | chr8_3:8923811-8923830 | None:intergenic | 30.0% | |
| TGTGAGCAACAAAAATAAGA+GGG | + | chr8_3:8923877-8923896 | None:intergenic | 30.0% | |
| ATGTGAGCAACAAAAATAAG+AGG | + | chr8_3:8923878-8923897 | None:intergenic | 30.0% | |
| ! | ATGCACATGTTTTCACATTT+AGG | - | chr8_3:8923896-8923915 | Msa1275070:intron | 30.0% |
| ! | TTTTATTCATGGATTTGCCA+AGG | - | chr8_3:8924543-8924562 | Msa1275070:intron | 30.0% |
| ACACTGTATGTTATCTAACA+AGG | - | chr8_3:8924980-8924999 | Msa1275070:intron | 30.0% | |
| ! | ATTAATTGGTTGAAGTGTTC+CGG | - | chr8_3:8925164-8925183 | Msa1275070:three_prime_UTR | 30.0% |
| ATCATGTCTATATATGCAGT+AGG | - | chr8_3:8925208-8925227 | Msa1275070:three_prime_UTR | 30.0% | |
| GATCATATAATAGGCATCAT+TGG | - | chr8_3:8925379-8925398 | Msa1275070:intron | 30.0% | |
| TGTAACCCTCAAATTGTTAA+TGG | + | chr8_3:8925567-8925586 | None:intergenic | 30.0% | |
| GGGTTACAACATTAAATCTT+TGG | - | chr8_3:8925579-8925598 | Msa1275070:intron | 30.0% | |
| AGAACTCATGGAAAAGAATA+GGG | + | chr8_3:8925605-8925624 | None:intergenic | 30.0% | |
| AAGAACTCATGGAAAAGAAT+AGG | + | chr8_3:8925606-8925625 | None:intergenic | 30.0% | |
| !!! | TTTTCTTTAGAATGATGTGC+TGG | - | chr8_3:8925635-8925654 | Msa1275070:intron | 30.0% |
| !! | TTTCTTTAGAATGATGTGCT+GGG | - | chr8_3:8925636-8925655 | Msa1275070:intron | 30.0% |
| TTCGTGGTATGAAATTTATC+TGG | - | chr8_3:8925808-8925827 | Msa1275070:intron | 30.0% | |
| AGCTGACAATAATTGTATAG+TGG | - | chr8_3:8925852-8925871 | Msa1275070:intron | 30.0% | |
| !!! | TATTTTTTTGCACCTAGTGA+TGG | + | chr8_3:8925890-8925909 | None:intergenic | 30.0% |
| GACAATAGTAACATAGTACA+AGG | + | chr8_3:8925925-8925944 | None:intergenic | 30.0% | |
| TAATTAACAGTCGATTGTAC+AGG | + | chr8_3:8925956-8925975 | None:intergenic | 30.0% | |
| TGATAAATGAGCGAAAATTC+AGG | + | chr8_3:8926210-8926229 | None:intergenic | 30.0% | |
| GAAGAAGCGATAGAATAAAT+TGG | - | chr8_3:8926462-8926481 | Msa1275070:intron | 30.0% | |
| ! | TAGACCATTTCTGGATAATT+TGG | - | chr8_3:8926488-8926507 | Msa1275070:intron | 30.0% |
| ! | AGACCATTTCTGGATAATTT+GGG | - | chr8_3:8926489-8926508 | Msa1275070:intron | 30.0% |
| ATAAATTGCAACTACTCAGA+GGG | + | chr8_3:8926541-8926560 | None:intergenic | 30.0% | |
| TATAAATTGCAACTACTCAG+AGG | + | chr8_3:8926542-8926561 | None:intergenic | 30.0% | |
| GTTGCAATTTATAGAAAGGT+TGG | - | chr8_3:8926549-8926568 | Msa1275070:intron | 30.0% | |
| TAGCTTGGATTTAACTCTTA+GGG | + | chr8_3:8926850-8926869 | None:intergenic | 30.0% | |
| ! | TTAGCTTGGATTTAACTCTT+AGG | + | chr8_3:8926851-8926870 | None:intergenic | 30.0% |
| AATCTTGATTCACCATATTG+TGG | + | chr8_3:8927325-8927344 | None:intergenic | 30.0% | |
| AGGAAGTAATCATATTCAAG+GGG | + | chr8_3:8927389-8927408 | None:intergenic | 30.0% | |
| ! | CGTGTACACATAATTTTGAA+AGG | + | chr8_3:8927593-8927612 | None:intergenic | 30.0% |
| ! | CACATTTGAAGTGAAACAAA+AGG | + | chr8_3:8927648-8927667 | None:intergenic | 30.0% |
| AATGCTAAGGCATAATTCAA+TGG | + | chr8_3:8927763-8927782 | None:intergenic | 30.0% | |
| GACGCTTAAGGTTATTAAAT+TGG | - | chr8_3:8927794-8927813 | Msa1275070:intron | 30.0% | |
| TTATTAAATTGGAACGGCTA+AGG | - | chr8_3:8927805-8927824 | Msa1275070:intron | 30.0% | |
| TATTAAATTGGAACGGCTAA+GGG | - | chr8_3:8927806-8927825 | Msa1275070:intron | 30.0% | |
| TCCAAAGGAAGAAAAGTTTA+AGG | - | chr8_3:8927986-8928005 | Msa1275070:intron | 30.0% | |
| GATTACTTTCGTTTGTAATG+TGG | - | chr8_3:8928054-8928073 | Msa1275070:CDS | 30.0% | |
| TTGGTCAGATTATGAAACAT+GGG | + | chr8_3:8928234-8928253 | None:intergenic | 30.0% | |
| ACCAACATTGAGCTAAAATT+TGG | - | chr8_3:8928249-8928268 | Msa1275070:intron | 30.0% | |
| AACCTAAGTGTTAAAGTTTG+GGG | + | chr8_3:8928329-8928348 | None:intergenic | 30.0% | |
| GAAATACGTGAATTGTTGAT+AGG | - | chr8_3:8928414-8928433 | Msa1275070:intron | 30.0% | |
| ATTTGTTTCATAATGGCCAT+AGG | - | chr8_3:8928665-8928684 | Msa1275070:intron | 30.0% | |
| TTTGTTTCATAATGGCCATA+GGG | - | chr8_3:8928666-8928685 | Msa1275070:intron | 30.0% | |
| CTACAAATAGTAGGATTTGA+TGG | - | chr8_3:8928734-8928753 | Msa1275070:CDS | 30.0% | |
| TTTGAAAAATGTTATGCCAG+AGG | + | chr8_3:8928790-8928809 | None:intergenic | 30.0% | |
| GTGAAATTTGATCCTCAATC+TGG | - | chr8_3:8922944-8922963 | Msa1275070:three_prime_UTR | 35.0% | |
| TGTAAAACAGATCCAGATTG+AGG | + | chr8_3:8922959-8922978 | None:intergenic | 35.0% | |
| !! | AGTTGTTTTCATAAGCAGTC+TGG | - | chr8_3:8923385-8923404 | Msa1275070:intron | 35.0% |
| !! | GTTGTTTTCATAAGCAGTCT+GGG | - | chr8_3:8923386-8923405 | Msa1275070:intron | 35.0% |
| ! | GGTTTTTCCAGGATAATTAG+TGG | - | chr8_3:8923570-8923589 | Msa1275070:intron | 35.0% |
| CTTACGTGGTTATAGACAAA+AGG | - | chr8_3:8923621-8923640 | Msa1275070:intron | 35.0% | |
| GGTTATAGACAAAAGGTCAA+AGG | - | chr8_3:8923628-8923647 | Msa1275070:intron | 35.0% | |
| TATAGACAAAAGGTCAAAGG+GGG | - | chr8_3:8923631-8923650 | Msa1275070:intron | 35.0% | |
| CTTTCATTACAAGTTCAAGG+TGG | - | chr8_3:8923696-8923715 | Msa1275070:intron | 35.0% | |
| TTGAAAGGGACAAATAGGTA+TGG | + | chr8_3:8923796-8923815 | None:intergenic | 35.0% | |
| CCAAATTGAAAGGGACAAAT+AGG | + | chr8_3:8923801-8923820 | None:intergenic | 35.0% | |
| CCTATTTGTCCCTTTCAATT+TGG | - | chr8_3:8923798-8923817 | Msa1275070:intron | 35.0% | |
| ATTTGTCCCTTTCAATTTGG+TGG | - | chr8_3:8923801-8923820 | Msa1275070:intron | 35.0% | |
| TTTGTCCCTTTCAATTTGGT+GGG | - | chr8_3:8923802-8923821 | Msa1275070:intron | 35.0% | |
| TTAAGTAGGAAAAGGTAGCT+TGG | - | chr8_3:8923837-8923856 | Msa1275070:intron | 35.0% | |
| GTGAGCAACAAAAATAAGAG+GGG | + | chr8_3:8923876-8923895 | None:intergenic | 35.0% | |
| ! | CATTTTCTGATGGTTCATCA+GGG | + | chr8_3:8923931-8923950 | None:intergenic | 35.0% |
| ! | TATTTTCTGATTGTGTGCAG+TGG | - | chr8_3:8924124-8924143 | Msa1275070:intron | 35.0% |
| TCCAACATATTGCTAATGCT+GGG | + | chr8_3:8924203-8924222 | None:intergenic | 35.0% | |
| TTCCAACATATTGCTAATGC+TGG | + | chr8_3:8924204-8924223 | None:intergenic | 35.0% | |
| GCAATAAAAAGAGTGGAACA+TGG | + | chr8_3:8924453-8924472 | None:intergenic | 35.0% | |
| AATTCATCCTCAGTGCAATT+TGG | + | chr8_3:8924486-8924505 | None:intergenic | 35.0% | |
| ! | GAATGCTTTTCCAATTTCAG+AGG | + | chr8_3:8924570-8924589 | None:intergenic | 35.0% |
| TAGATTTAACAAGAACAGGC+AGG | + | chr8_3:8924595-8924614 | None:intergenic | 35.0% | |
| !! | TGTCTTCAATCCATTTTTCC+AGG | - | chr8_3:8924662-8924681 | Msa1275070:intron | 35.0% |
| TTGGTCAAAATGCGTTCTAA+AGG | - | chr8_3:8924700-8924719 | Msa1275070:intron | 35.0% | |
| TCAAAATCAGCAAATGCTAC+AGG | + | chr8_3:8924733-8924752 | None:intergenic | 35.0% | |
| !!! | TGTAGCATTTGCTGATTTTG+AGG | - | chr8_3:8924732-8924751 | Msa1275070:intron | 35.0% |
| GGATACAAAATTAACCAACC+AGG | - | chr8_3:8924903-8924922 | Msa1275070:intron | 35.0% | |
| TCTATATATGCAGTAGGACT+GGG | - | chr8_3:8925214-8925233 | Msa1275070:three_prime_UTR | 35.0% | |
| GGCATCATTGGTACAATATT+AGG | - | chr8_3:8925391-8925410 | Msa1275070:CDS | 35.0% | |
| TCAATGACTATTGGCATCAT+TGG | - | chr8_3:8925457-8925476 | Msa1275070:intron | 35.0% | |
| ATTGGCATCATTGGTAGAAT+AGG | - | chr8_3:8925466-8925485 | Msa1275070:intron | 35.0% | |
| ATTGTGTGTGAATGTCAGAT+AGG | - | chr8_3:8925511-8925530 | Msa1275070:intron | 35.0% | |
| TGTGAATGTCAGATAGGAAA+GGG | - | chr8_3:8925517-8925536 | Msa1275070:intron | 35.0% | |
| AAGAGTAACTGAAGAACTCA+TGG | + | chr8_3:8925617-8925636 | None:intergenic | 35.0% | |
| AACAAAATCTGACCATCACT+AGG | - | chr8_3:8925875-8925894 | Msa1275070:intron | 35.0% | |
| AATAACCATGTCCAATCCAA+CGG | + | chr8_3:8926009-8926028 | None:intergenic | 35.0% | |
| AATGCTGAATGGAACAGAAA+TGG | + | chr8_3:8926060-8926079 | None:intergenic | 35.0% | |
| ! | TTCAAGTGACAGCATTGAAA+AGG | + | chr8_3:8926148-8926167 | None:intergenic | 35.0% |
| ATTTCCTGTCGAAAGAAGAA+AGG | + | chr8_3:8926246-8926265 | None:intergenic | 35.0% | |
| GGAAATTGATCAAGCTGTTA+AGG | - | chr8_3:8926260-8926279 | Msa1275070:intron | 35.0% | |
| TTCTAACTCTCTTCTTTCCT+TGG | - | chr8_3:8926405-8926424 | Msa1275070:intron | 35.0% | |
| GAACCCAAATTATCCAGAAA+TGG | + | chr8_3:8926495-8926514 | None:intergenic | 35.0% | |
| ! | AGATCTAAAGAGAAGCACAA+AGG | - | chr8_3:8926800-8926819 | Msa1275070:intron | 35.0% |
| ! | TTTAACTCTTAGGGGTTGAT+TGG | + | chr8_3:8926841-8926860 | None:intergenic | 35.0% |
| AGCTTGGATTTAACTCTTAG+GGG | + | chr8_3:8926849-8926868 | None:intergenic | 35.0% | |
| ACCATCAAGAATGTCAACAA+TGG | - | chr8_3:8926965-8926984 | Msa1275070:intron | 35.0% | |
| ACCATTGTTGACATTCTTGA+TGG | + | chr8_3:8926969-8926988 | None:intergenic | 35.0% | |
| ACCTATCAAGGTCTTTACAT+TGG | - | chr8_3:8927098-8927117 | Msa1275070:intron | 35.0% | |
| AATTGAACCCATGACATTGT+GGG | - | chr8_3:8927128-8927147 | Msa1275070:intron | 35.0% | |
| AAGGCTAAACTACCACAATA+TGG | - | chr8_3:8927310-8927329 | Msa1275070:intron | 35.0% | |
| ! | TTTTCTTCCTACCAAACACA+CGG | - | chr8_3:8927474-8927493 | Msa1275070:intron | 35.0% |
| AAAGGAGAAGAAGTCTTTGA+AGG | + | chr8_3:8927575-8927594 | None:intergenic | 35.0% | |
| !! | TTTAACTTTTCCATGCAACG+AGG | - | chr8_3:8927711-8927730 | Msa1275070:intron | 35.0% |
| GAAAGATCTTTCTCATCAAG+TGG | - | chr8_3:8927830-8927849 | Msa1275070:intron | 35.0% | |
| ATTGCATTCTGTTCTTCCAA+AGG | - | chr8_3:8927971-8927990 | Msa1275070:intron | 35.0% | |
| ! | GCCTTAAACTTTTCTTCCTT+TGG | + | chr8_3:8927990-8928009 | None:intergenic | 35.0% |
| GGAGAGTCTATATGTACAAT+TGG | - | chr8_3:8928075-8928094 | Msa1275070:CDS | 35.0% | |
| TGTAATCTATGCAGAGCAAA+CGG | - | chr8_3:8928190-8928209 | Msa1275070:intron | 35.0% | |
| GTTGGTCAGATTATGAAACA+TGG | + | chr8_3:8928235-8928254 | None:intergenic | 35.0% | |
| !!! | GCCAAATTTTAGCTCAATGT+TGG | + | chr8_3:8928253-8928272 | None:intergenic | 35.0% |
| ! | GCTATGAATATTGGCCTAAT+AGG | - | chr8_3:8928271-8928290 | Msa1275070:intron | 35.0% |
| ! | ATGAATATTGGCCTAATAGG+TGG | - | chr8_3:8928274-8928293 | Msa1275070:intron | 35.0% |
| !!! | GACATTTTGGAACAAATTGG+TGG | + | chr8_3:8928481-8928500 | None:intergenic | 35.0% |
| CTTAAAACATCTTGCCATAG+AGG | - | chr8_3:8928512-8928531 | Msa1275070:intron | 35.0% | |
| GTGAATATCCTCAAATGACA+TGG | + | chr8_3:8928606-8928625 | None:intergenic | 35.0% | |
| TGTAGAGGTCATTCATATCT+AGG | + | chr8_3:8928631-8928650 | None:intergenic | 35.0% | |
| !! | CTTTGTTTCATTTTCTCCTC+TGG | - | chr8_3:8928771-8928790 | Msa1275070:CDS | 35.0% |
| ! | TATTTTGCATGCATAGGTGG+TGG | - | chr8_3:8923596-8923615 | Msa1275070:intron | 40.0% |
| ! | CCATTTTCTGATGGTTCATC+AGG | + | chr8_3:8923932-8923951 | None:intergenic | 40.0% |
| CCTGATGAACCATCAGAAAA+TGG | - | chr8_3:8923929-8923948 | Msa1275070:intron | 40.0% | |
| TTGCATTCTCAACCTTTGTG+TGG | + | chr8_3:8923978-8923997 | None:intergenic | 40.0% | |
| TTCTGACAATCATGTACCTG+TGG | - | chr8_3:8924162-8924181 | Msa1275070:intron | 40.0% | |
| ACCCAGCATTAGCAATATGT+TGG | - | chr8_3:8924199-8924218 | Msa1275070:intron | 40.0% | |
| TTTCCAATTTCAGAGGTCCT+TGG | + | chr8_3:8924563-8924582 | None:intergenic | 40.0% | |
| !! | ATCCATTTTTCCAGGTATGC+TGG | - | chr8_3:8924670-8924689 | Msa1275070:intron | 40.0% |
| ATCCAGCATACCTGGAAAAA+TGG | + | chr8_3:8924675-8924694 | None:intergenic | 40.0% | |
| !! | GTCAAAATGCGTTCTAAAGG+AGG | - | chr8_3:8924703-8924722 | Msa1275070:intron | 40.0% |
| TGCAAAGTTGACTAATCTCG+TGG | + | chr8_3:8925130-8925149 | None:intergenic | 40.0% | |
| GTCTATATATGCAGTAGGAC+TGG | - | chr8_3:8925213-8925232 | Msa1275070:three_prime_UTR | 40.0% | |
| GTGTGAATGTCAGATAGGAA+AGG | - | chr8_3:8925516-8925535 | Msa1275070:intron | 40.0% | |
| GTGAATGTCAGATAGGAAAG+GGG | - | chr8_3:8925518-8925537 | Msa1275070:intron | 40.0% | |
| TGAATGTCAGATAGGAAAGG+GGG | - | chr8_3:8925519-8925538 | Msa1275070:intron | 40.0% | |
| TCAACCTTTCTTCTTTCGAC+AGG | - | chr8_3:8926239-8926258 | Msa1275070:intron | 40.0% | |
| TGATCAAGCTGTTAAGGTCA+TGG | - | chr8_3:8926266-8926285 | Msa1275070:intron | 40.0% | |
| ! | ATATCTAGAGAGCACAACCA+AGG | + | chr8_3:8926425-8926444 | None:intergenic | 40.0% |
| TTGTGCTCTCTAGATATGCA+AGG | - | chr8_3:8926428-8926447 | Msa1275070:intron | 40.0% | |
| ! | GATATGCAAGGTCTAGAATG+AGG | - | chr8_3:8926440-8926459 | Msa1275070:intron | 40.0% |
| AATTGGAGCTAGACCATTTC+TGG | - | chr8_3:8926479-8926498 | Msa1275070:intron | 40.0% | |
| !! | TCGACTTTTGTTTGCGTATC+AGG | - | chr8_3:8927025-8927044 | Msa1275070:intron | 40.0% |
| !! | CGACTTTTGTTTGCGTATCA+GGG | - | chr8_3:8927026-8927045 | Msa1275070:intron | 40.0% |
| TACTTGCAGATCACCTATCA+AGG | - | chr8_3:8927086-8927105 | Msa1275070:intron | 40.0% | |
| GCCAATGTAAAGACCTTGAT+AGG | + | chr8_3:8927102-8927121 | None:intergenic | 40.0% | |
| GAATTGAACCCATGACATTG+TGG | - | chr8_3:8927127-8927146 | Msa1275070:intron | 40.0% | |
| ATTGAACCCATGACATTGTG+GGG | - | chr8_3:8927129-8927148 | Msa1275070:intron | 40.0% | |
| ! | CCAATGAAGGTTGACTCTAT+TGG | + | chr8_3:8927169-8927188 | None:intergenic | 40.0% |
| CCAATAGAGTCAACCTTCAT+TGG | - | chr8_3:8927166-8927185 | Msa1275070:intron | 40.0% | |
| GACTACAATTGAGCCAATGA+AGG | + | chr8_3:8927182-8927201 | None:intergenic | 40.0% | |
| CAATGGCAATGCTGATGTTA+AGG | + | chr8_3:8927746-8927765 | None:intergenic | 40.0% | |
| ! | GGCTCTAATCAAATTAGGCA+AGG | + | chr8_3:8928012-8928031 | None:intergenic | 40.0% |
| CATGGGAAACTTAATACACC+AGG | + | chr8_3:8928217-8928236 | None:intergenic | 40.0% | |
| ! | ATTGGCCTAATAGGTGGAAT+TGG | - | chr8_3:8928280-8928299 | Msa1275070:intron | 40.0% |
| AGCAACCAATTCCACCTATT+AGG | + | chr8_3:8928288-8928307 | None:intergenic | 40.0% | |
| TGCCCCAAACTTTAACACTT+AGG | - | chr8_3:8928324-8928343 | Msa1275070:intron | 40.0% | |
| ! | AGCTGCGATGAAAGACATTT+TGG | + | chr8_3:8928494-8928513 | None:intergenic | 40.0% |
| TCTTGCCATAGAGGTTACAA+AGG | - | chr8_3:8928521-8928540 | Msa1275070:intron | 40.0% | |
| CCATAGAGGTTACAAAGGTT+GGG | - | chr8_3:8928526-8928545 | Msa1275070:intron | 40.0% | |
| CATAGAGGTTACAAAGGTTG+GGG | - | chr8_3:8928527-8928546 | Msa1275070:intron | 40.0% | |
| AACTTGCCAGGTCAAACTCT+AGG | - | chr8_3:8922984-8923003 | Msa1275070:intron | 45.0% | |
| ACTTGACGATCCCTGAACAT+TGG | + | chr8_3:8923660-8923679 | None:intergenic | 45.0% | |
| !!! | TGGTTGCTGCCATTTTCTGA+TGG | + | chr8_3:8923941-8923960 | None:intergenic | 45.0% |
| TCAGAAAATGGCAGCAACCA+TGG | - | chr8_3:8923941-8923960 | Msa1275070:intron | 45.0% | |
| GCGATATAGCAACCACACAA+AGG | - | chr8_3:8923963-8923982 | Msa1275070:intron | 45.0% | |
| ACAATCATGTACCTGTGGCA+AGG | - | chr8_3:8924167-8924186 | Msa1275070:intron | 45.0% | |
| CAATCATGTACCTGTGGCAA+GGG | - | chr8_3:8924168-8924187 | Msa1275070:intron | 45.0% | |
| ! | GATGTTTTCAAATCGGCTGC+AGG | - | chr8_3:8924395-8924414 | Msa1275070:intron | 45.0% |
| TCTTGGTCCAAATTGCACTG+AGG | - | chr8_3:8924476-8924495 | Msa1275070:intron | 45.0% | |
| !! | TTGCCAAGGACCTCTGAAAT+TGG | - | chr8_3:8924557-8924576 | Msa1275070:intron | 45.0% |
| ! | CAAGTTGAATCCAGCATACC+TGG | + | chr8_3:8924683-8924702 | None:intergenic | 45.0% |
| CAGGTATGCTGGATTCAACT+TGG | - | chr8_3:8924681-8924700 | Msa1275070:intron | 45.0% | |
| GGTAACTCAACTGTTCTTGC+TGG | - | chr8_3:8924753-8924772 | Msa1275070:intron | 45.0% | |
| ACACGCAGACAAAAGACACT+AGG | - | chr8_3:8924838-8924857 | Msa1275070:intron | 45.0% | |
| AATTAACCAACCAGGCCCAT+TGG | - | chr8_3:8924911-8924930 | Msa1275070:intron | 45.0% | |
| ATCTAATGATCCAATGGGCC+TGG | + | chr8_3:8924924-8924943 | None:intergenic | 45.0% | |
| AAGTGTTCCGGTATGACACT+CGG | - | chr8_3:8925176-8925195 | Msa1275070:three_prime_UTR | 45.0% | |
| AAGGGGGAGAGTGGAAATTA+TGG | - | chr8_3:8925535-8925554 | Msa1275070:intron | 45.0% | |
| TATTGGCACACATCAGTTCG+TGG | - | chr8_3:8925792-8925811 | Msa1275070:intron | 45.0% | |
| TCTTGTCCAACCTTCTCTCT+TGG | - | chr8_3:8926098-8926117 | Msa1275070:intron | 45.0% | |
| GTAATCGCAACCAAGAGAGA+AGG | + | chr8_3:8926111-8926130 | None:intergenic | 45.0% | |
| ! | TGAAAAGGCAGGGGTATACT+AGG | + | chr8_3:8926133-8926152 | None:intergenic | 45.0% |
| ! | TGACAGCATTGAAAAGGCAG+GGG | + | chr8_3:8926142-8926161 | None:intergenic | 45.0% |
| ! | GTGACAGCATTGAAAAGGCA+GGG | + | chr8_3:8926143-8926162 | None:intergenic | 45.0% |
| ! | AGTGACAGCATTGAAAAGGC+AGG | + | chr8_3:8926144-8926163 | None:intergenic | 45.0% |
| TCAAGCTGTTAAGGTCATGG+AGG | - | chr8_3:8926269-8926288 | Msa1275070:intron | 45.0% | |
| GCTCACTTCCATCATCAGAT+CGG | - | chr8_3:8926304-8926323 | Msa1275070:intron | 45.0% | |
| CTCACTTCCATCATCAGATC+GGG | - | chr8_3:8926305-8926324 | Msa1275070:intron | 45.0% | |
| TCACTTCCATCATCAGATCG+GGG | - | chr8_3:8926306-8926325 | Msa1275070:intron | 45.0% | |
| ! | ACTCTTAGGGGTTGATTGGT+GGG | + | chr8_3:8926837-8926856 | None:intergenic | 45.0% |
| ! | AACTCTTAGGGGTTGATTGG+TGG | + | chr8_3:8926838-8926857 | None:intergenic | 45.0% |
| TTGAACCCATGACATTGTGG+GGG | - | chr8_3:8927130-8927149 | Msa1275070:intron | 45.0% | |
| TAACTCCCCCACAATGTCAT+GGG | + | chr8_3:8927138-8927157 | None:intergenic | 45.0% | |
| ATAACTCCCCCACAATGTCA+TGG | + | chr8_3:8927139-8927158 | None:intergenic | 45.0% | |
| ! | TGGGTTGAGTGTAGCTGAAA+AGG | - | chr8_3:8927291-8927310 | Msa1275070:intron | 45.0% |
| AGTCCTATCTCTCGACTTTG+AGG | - | chr8_3:8927543-8927562 | Msa1275070:CDS | 45.0% | |
| TGTCCTCAAAGTCGAGAGAT+AGG | + | chr8_3:8927549-8927568 | None:intergenic | 45.0% | |
| GACATCGTATGGATCACAAC+AGG | + | chr8_3:8927680-8927699 | None:intergenic | 45.0% | |
| GTTCTCAATTCCTCGTTGCA+TGG | + | chr8_3:8927724-8927743 | None:intergenic | 45.0% | |
| GCCATAGAGGTTACAAAGGT+TGG | - | chr8_3:8928525-8928544 | Msa1275070:intron | 45.0% | |
| CCCAACCTTTGTAACCTCTA+TGG | + | chr8_3:8928529-8928548 | None:intergenic | 45.0% | |
| ! | GCTACACACCATGTCATTTG+AGG | - | chr8_3:8928595-8928614 | Msa1275070:intron | 45.0% |
| TTGCCAGGTCAAACTCTAGG+AGG | - | chr8_3:8922987-8923006 | Msa1275070:intron | 50.0% | |
| CTTCCTCCTAGAGTTTGACC+TGG | + | chr8_3:8922993-8923012 | None:intergenic | 50.0% | |
| TCTAGGAGGAAGCGAAAACC+AGG | - | chr8_3:8923001-8923020 | Msa1275070:intron | 50.0% | |
| AGACAAAAGGTCAAAGGGGG+AGG | - | chr8_3:8923634-8923653 | Msa1275070:intron | 50.0% | |
| CAGGGATCGTCAAGTGATGA+TGG | - | chr8_3:8923665-8923684 | Msa1275070:intron | 50.0% | |
| GTGTGGTTGCTATATCGCCA+TGG | + | chr8_3:8923961-8923980 | None:intergenic | 50.0% | |
| ! | TGCAGTGGTGATGCAGTTGT+TGG | - | chr8_3:8924139-8924158 | Msa1275070:intron | 50.0% |
| GTTTCACTTACCCTTGCCAC+AGG | + | chr8_3:8924181-8924200 | None:intergenic | 50.0% | |
| AATGATCCAATGGGCCTGGT+TGG | + | chr8_3:8924920-8924939 | None:intergenic | 50.0% | |
| CATGACACCGAGTGTCATAC+CGG | + | chr8_3:8925186-8925205 | None:intergenic | 50.0% | |
| TGGAATACGCTTACCTCCGT+TGG | - | chr8_3:8925990-8926009 | Msa1275070:intron | 50.0% | |
| TACGCTTACCTCCGTTGGAT+TGG | - | chr8_3:8925995-8926014 | Msa1275070:intron | 50.0% | |
| ! | TACCTCCGTTGGATTGGACA+TGG | - | chr8_3:8926001-8926020 | Msa1275070:intron | 50.0% |
| AACCATGTCCAATCCAACGG+AGG | + | chr8_3:8926006-8926025 | None:intergenic | 50.0% | |
| TCGCAACCAAGAGAGAAGGT+TGG | + | chr8_3:8926107-8926126 | None:intergenic | 50.0% | |
| TAAGGTCATGGAGGAGCTTC+AGG | - | chr8_3:8926278-8926297 | Msa1275070:intron | 50.0% | |
| AAGGTCATGGAGGAGCTTCA+GGG | - | chr8_3:8926279-8926298 | Msa1275070:intron | 50.0% | |
| GTTGATTGGTGGGGAAGACT+TGG | + | chr8_3:8926827-8926846 | None:intergenic | 50.0% | |
| ! | CTCTTAGGGGTTGATTGGTG+GGG | + | chr8_3:8926836-8926855 | None:intergenic | 50.0% |
| TTGCGTATCAGGGTCAGAGT+AGG | - | chr8_3:8927036-8927055 | Msa1275070:intron | 50.0% | |
| TGTTGAGAGGATGCTTGTGG+TGG | + | chr8_3:8927500-8927519 | None:intergenic | 50.0% | |
| CCTTGTTGAGAGGATGCTTG+TGG | + | chr8_3:8927503-8927522 | None:intergenic | 50.0% | |
| CCACAAGCATCCTCTCAACA+AGG | - | chr8_3:8927500-8927519 | Msa1275070:intron | 50.0% | |
| CAAGCATCCTCTCAACAAGG+TGG | - | chr8_3:8927503-8927522 | Msa1275070:intron | 50.0% | |
| CCTCTCAACAAGGTGGAAGT+CGG | - | chr8_3:8927510-8927529 | Msa1275070:intron | 50.0% | |
| CAACAAGGTGGAAGTCGGTA+TGG | - | chr8_3:8927515-8927534 | Msa1275070:intron | 50.0% | |
| CAAACTTTCGTCGCCCAACT+CGG | + | chr8_3:8928452-8928471 | None:intergenic | 50.0% | |
| GTTGGGCGACGAAAGTTTGA+AGG | - | chr8_3:8928453-8928472 | Msa1275070:intron | 50.0% | |
| TGTTGTTGACATGCGCCCTA+TGG | + | chr8_3:8928684-8928703 | None:intergenic | 50.0% | |
| !! | CATAGGTGGTGGAGCTTACG+TGG | - | chr8_3:8923607-8923626 | Msa1275070:intron | 55.0% |
| AAAGGGGGAGGCCAATGTTC+AGG | - | chr8_3:8923646-8923665 | Msa1275070:intron | 55.0% | |
| AAGGGGGAGGCCAATGTTCA+GGG | - | chr8_3:8923647-8923666 | Msa1275070:intron | 55.0% | |
| CTGCAGGCGCAACATGGAAA+GGG | - | chr8_3:8924411-8924430 | Msa1275070:intron | 55.0% | |
| ! | CATGGAAAGGGTGGTGGTGA+TGG | - | chr8_3:8924423-8924442 | Msa1275070:intron | 55.0% |
| CAGATAGGAAAGGGGGAGAG+TGG | - | chr8_3:8925526-8925545 | Msa1275070:intron | 55.0% | |
| CTTCCATCATCAGATCGGGG+TGG | - | chr8_3:8926309-8926328 | Msa1275070:intron | 55.0% | |
| ATGCCACCCCGATCTGATGA+TGG | + | chr8_3:8926315-8926334 | None:intergenic | 55.0% | |
| CCGACTTCCACCTTGTTGAG+AGG | + | chr8_3:8927513-8927532 | None:intergenic | 55.0% | |
| CTATGCAGAGCAAACGGTCC+TGG | - | chr8_3:8928196-8928215 | Msa1275070:intron | 55.0% | |
| GGTGCAGATCAAGCCGAGTT+GGG | - | chr8_3:8928436-8928455 | Msa1275070:intron | 55.0% | |
| AATCGGCTGCAGGCGCAACA+TGG | - | chr8_3:8924405-8924424 | Msa1275070:intron | 60.0% | |
| GCTGCAGGCGCAACATGGAA+AGG | - | chr8_3:8924410-8924429 | Msa1275070:intron | 60.0% | |
| CAGGCGCAACATGGAAAGGG+TGG | - | chr8_3:8924414-8924433 | Msa1275070:intron | 60.0% | |
| GCGCAACATGGAAAGGGTGG+TGG | - | chr8_3:8924417-8924436 | Msa1275070:intron | 60.0% | |
| !! | GGAAAGGGTGGTGGTGATGG+AGG | - | chr8_3:8924426-8924445 | Msa1275070:intron | 60.0% |
| GTGGTGGCCGTGTGTTTGGT+AGG | + | chr8_3:8927484-8927503 | None:intergenic | 60.0% | |
| GCTTGTGGTGGCCGTGTGTT+TGG | + | chr8_3:8927488-8927507 | None:intergenic | 60.0% | |
| GGGTGCAGATCAAGCCGAGT+TGG | - | chr8_3:8928435-8928454 | Msa1275070:intron | 60.0% | |
| CGCGTGTGTGTGGTGTCTGC+TGG | + | chr8_3:8924789-8924808 | None:intergenic | 65.0% | |
| ! | TGCGCGCGCGCGCGTGTGTG+TGG | + | chr8_3:8924799-8924818 | None:intergenic | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_3 | gene | 8922905 | 8928821 | 8922905 | ID=Msa1275070;Name=Msa1275070 |
| chr8_3 | mRNA | 8922905 | 8928821 | 8922905 | ID=Msa1275070-mRNA-1;Parent=Msa1275070;Name=Msa1275070-mRNA-1;_AED=0.17;_eAED=0.17;_QI=0|0.75|0.77|1|0.62|0.66|9|268|206 |
| chr8_3 | exon | 8922905 | 8922998 | 8922905 | ID=Msa1275070-mRNA-1:exon:3758;Parent=Msa1275070-mRNA-1 |
| chr8_3 | exon | 8925078 | 8925285 | 8925078 | ID=Msa1275070-mRNA-1:exon:3757;Parent=Msa1275070-mRNA-1 |
| chr8_3 | exon | 8925383 | 8925465 | 8925383 | ID=Msa1275070-mRNA-1:exon:3756;Parent=Msa1275070-mRNA-1 |
| chr8_3 | exon | 8926973 | 8927042 | 8926973 | ID=Msa1275070-mRNA-1:exon:3755;Parent=Msa1275070-mRNA-1 |
| chr8_3 | exon | 8927203 | 8927309 | 8927203 | ID=Msa1275070-mRNA-1:exon:3754;Parent=Msa1275070-mRNA-1 |
| chr8_3 | exon | 8927537 | 8927582 | 8927537 | ID=Msa1275070-mRNA-1:exon:3753;Parent=Msa1275070-mRNA-1 |
| chr8_3 | exon | 8927742 | 8927808 | 8927742 | ID=Msa1275070-mRNA-1:exon:3752;Parent=Msa1275070-mRNA-1 |
| chr8_3 | exon | 8928019 | 8928114 | 8928019 | ID=Msa1275070-mRNA-1:exon:3751;Parent=Msa1275070-mRNA-1 |
| chr8_3 | exon | 8928704 | 8928821 | 8928704 | ID=Msa1275070-mRNA-1:exon:3750;Parent=Msa1275070-mRNA-1 |
| chr8_3 | CDS | 8928704 | 8928821 | 8928704 | ID=Msa1275070-mRNA-1:cds;Parent=Msa1275070-mRNA-1 |
| chr8_3 | CDS | 8928019 | 8928114 | 8928019 | ID=Msa1275070-mRNA-1:cds;Parent=Msa1275070-mRNA-1 |
| chr8_3 | CDS | 8927742 | 8927808 | 8927742 | ID=Msa1275070-mRNA-1:cds;Parent=Msa1275070-mRNA-1 |
| chr8_3 | CDS | 8927537 | 8927582 | 8927537 | ID=Msa1275070-mRNA-1:cds;Parent=Msa1275070-mRNA-1 |
| chr8_3 | CDS | 8927203 | 8927309 | 8927203 | ID=Msa1275070-mRNA-1:cds;Parent=Msa1275070-mRNA-1 |
| chr8_3 | CDS | 8926973 | 8927042 | 8926973 | ID=Msa1275070-mRNA-1:cds;Parent=Msa1275070-mRNA-1 |
| chr8_3 | CDS | 8925383 | 8925465 | 8925383 | ID=Msa1275070-mRNA-1:cds;Parent=Msa1275070-mRNA-1 |
| chr8_3 | CDS | 8925252 | 8925285 | 8925252 | ID=Msa1275070-mRNA-1:cds;Parent=Msa1275070-mRNA-1 |
| chr8_3 | three_prime_UTR | 8925078 | 8925251 | 8925078 | ID=Msa1275070-mRNA-1:three_prime_utr;Parent=Msa1275070-mRNA-1 |
| chr8_3 | three_prime_UTR | 8922905 | 8922998 | 8922905 | ID=Msa1275070-mRNA-1:three_prime_utr;Parent=Msa1275070-mRNA-1 |
| Gene Sequence |
| Protein sequence |
