AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0073670


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0073670 MtrunA17_Chr1g0181131 99.087 219 2 0 1 219 1 219 1.37e-162 447
Msa0073670 MtrunA17_Chr7g0264181 93.056 216 15 0 4 219 5 220 6.47e-154 425
Msa0073670 MtrunA17_Chr2g0326841 85.507 207 30 0 1 207 1 207 2.30e-132 370
Msa0073670 MtrunA17_Chr4g0028871 89.637 193 20 0 12 204 12 204 3.68e-128 360
Msa0073670 MtrunA17_Chr3g0142491 75.238 210 52 0 10 219 12 221 2.46e-121 343
Msa0073670 MtrunA17_Chr1g0177391 72.249 209 56 1 10 218 6 212 4.55e-112 319
Msa0073670 MtrunA17_Chr1g0151201 66.346 208 68 1 11 216 7 214 3.26e-101 292
Msa0073670 MtrunA17_Chr1g0156401 64.286 112 19 1 40 130 1 112 8.57e-43 140
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0073670 AT2G37210.1 85.581 215 29 2 1 214 1 214 5.63e-136 380
Msa0073670 AT3G53450.1 86.058 208 28 1 1 207 1 208 2.73e-133 373
Msa0073670 AT2G28305.1 89.394 198 21 0 10 207 5 202 1.19e-130 367
Msa0073670 AT2G37210.2 76.569 239 30 3 1 214 1 238 4.35e-130 366
Msa0073670 AT2G28305.3 90.503 179 17 0 10 188 5 183 2.64e-119 337
Msa0073670 AT5G06300.1 78.218 202 44 0 10 211 6 207 4.97e-118 335
Msa0073670 AT5G03270.1 82.796 186 32 0 10 195 16 201 3.07e-112 320
Msa0073670 AT5G03270.2 83.425 181 30 0 10 190 16 196 4.26e-109 311
Msa0073670 AT4G35190.1 71.429 203 58 0 6 208 2 204 1.39e-108 311
Msa0073670 AT2G35990.1 69.072 194 60 0 10 203 6 199 2.41e-105 303
Msa0073670 AT4G35190.2 73.057 193 50 1 6 198 2 192 7.63e-103 296
Msa0073670 AT5G11950.1 62.963 216 77 1 1 216 1 213 7.29e-101 291
Msa0073670 AT5G11950.2 62.963 216 77 1 1 216 1 213 7.29e-101 291
Msa0073670 AT5G11950.3 62.963 216 77 1 1 216 1 213 7.29e-101 291
Msa0073670 AT2G28305.2 91.667 132 11 0 10 141 5 136 1.84e-86 253
Msa0073670 AT2G35990.3 69.388 147 45 0 57 203 1 147 1.30e-76 228
Msa0073670 AT2G35990.2 69.388 147 45 0 57 203 1 147 1.30e-76 228
Msa0073670 AT5G11950.4 63.125 160 59 0 57 216 1 160 3.45e-73 219
Msa0073670 AT5G26140.2 51.656 151 51 1 84 212 6 156 1.22e-46 152
Msa0073670 AT5G26140.1 50.365 137 46 1 98 212 1 137 2.05e-39 133
Msa0073670 AT5G26140.3 53.774 106 49 0 107 212 17 122 3.69e-35 121

Find 68 sgRNAs with CRISPR-Local

Find 188 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGAAATATTGATCTAGTTTA+TGG 0.173128 1_2:-47518549 Msa0073670:CDS
TTTAGAAATAGATTACTTAA+AGG 0.231492 1_2:+47515964 None:intergenic
AAATTACATGCAGGTGGTTA+TGG 0.290968 1_2:-47516737 Msa0073670:intron
TTAGAAATAGATTACTTAAA+GGG 0.298161 1_2:+47515965 None:intergenic
AAAAGAGTTAGTGAAGAAAT+TGG 0.316670 1_2:-47516432 Msa0073670:CDS
CCTAGTACTTACAACTTAGA+AGG 0.333083 1_2:+47516027 None:intergenic
CTTGCGATGTTATACTCTTC+AGG 0.336242 1_2:+47516243 None:intergenic
CCTTCTAAGTTGTAAGTACT+AGG 0.339347 1_2:-47516027 Msa0073670:three_prime_UTR
CAAGATGCTGCCATTGAACT+TGG 0.349737 1_2:-47519013 Msa0073670:CDS
ACAATTATGTGGCGCGCATT+TGG 0.351381 1_2:+47516470 None:intergenic
TTACAAATGAAATTTCTTCC+AGG 0.361641 1_2:+47516115 None:intergenic
AGGAGGAAGCATTGGTCTAA+TGG 0.380070 1_2:-47518526 Msa0073670:CDS
AAATTTCATTTGTAAAGTAC+TGG 0.382613 1_2:-47516107 Msa0073670:three_prime_UTR
CATTGAACTTGGAAATGAAT+TGG 0.407304 1_2:-47519002 Msa0073670:intron
AATTACATGCAGGTGGTTAT+GGG 0.415602 1_2:-47516736 Msa0073670:intron
GATGGTGGAAGACATGTCAT+AGG 0.434367 1_2:-47518480 Msa0073670:CDS
CTCTCTAGGCATGAGTGTCT+TGG 0.437074 1_2:+47518316 None:intergenic
AAGCATTGGTCTAATGGGTT+CGG 0.439439 1_2:-47518520 Msa0073670:CDS
GTCATAACCTGGGCTCAACT+TGG 0.447889 1_2:-47516692 Msa0073670:CDS
GGAGGAAGCATTGGTCTAAT+GGG 0.451429 1_2:-47518525 Msa0073670:CDS
TCTCTAGGCATGAGTGTCTT+GGG 0.451553 1_2:+47518317 None:intergenic
CAATTCATTTCCAAGTTCAA+TGG 0.462751 1_2:+47519003 None:intergenic
TTGCAAGAAACAAATACAAA+TGG 0.467273 1_2:-47519119 Msa0073670:exon
CTTCTAAGTTGTAAGTACTA+GGG 0.474591 1_2:-47516026 Msa0073670:three_prime_UTR
GTGGGACTAGTAAATGTTGA+TGG 0.489170 1_2:-47516551 Msa0073670:CDS
TAGAAATAGATTACTTAAAG+GGG 0.491976 1_2:+47515966 None:intergenic
ATTGATCTAGTTTATGGAGG+AGG 0.513882 1_2:-47518543 Msa0073670:CDS
CAAATACAAATGGAGACAAA+TGG 0.514050 1_2:-47519109 Msa0073670:exon
TAGCTCAGGCTAACCTGGTA+AGG 0.520557 1_2:+47517760 None:intergenic
TGACTTCAAGAAGCTCCTCT+AGG 0.523303 1_2:+47516711 None:intergenic
ACTTGGGATTCATGACAAAC+CGG 0.526362 1_2:-47516675 Msa0073670:intron
CATCGACAAAGCTGTGGAAG+AGG 0.532010 1_2:-47516504 Msa0073670:CDS
AGCTTCTTGAAGTCATAACC+TGG 0.532925 1_2:-47516703 Msa0073670:CDS
GTTTATGGAGGAGGAAGCAT+TGG 0.534440 1_2:-47518534 Msa0073670:CDS
GTTTCACAAGCTGTTCATGA+TGG 0.539577 1_2:-47518498 Msa0073670:CDS
GCGTTGCTTCAAAGTTGAGC+TGG 0.540615 1_2:-47516290 Msa0073670:CDS
TTTGCAGCTAACTGGTGAAA+CGG 0.542234 1_2:-47517858 Msa0073670:intron
CTGTAGCAGATATGCATCAA+AGG 0.549564 1_2:-47517820 Msa0073670:CDS
AATTTCATTTGTAAAGTACT+GGG 0.549840 1_2:-47516106 Msa0073670:three_prime_UTR
GACTTCAAGAAGCTCCTCTA+GGG 0.553887 1_2:+47516712 None:intergenic
TCATAACCTGGGCTCAACTT+GGG 0.556522 1_2:-47516691 Msa0073670:CDS
TAAGAGTGTCAAAGTTCAAG+AGG 0.560240 1_2:-47519081 Msa0073670:CDS
GATGTTATACTCTTCAGGAT+AGG 0.563508 1_2:+47516248 None:intergenic
GCATCAAAGGAAGGCAGAGA+TGG 0.563589 1_2:-47517807 Msa0073670:CDS
TTCAAAGTTGAGCTGGCAGA+TGG 0.564883 1_2:-47516283 Msa0073670:CDS
TTCTAAGTTGTAAGTACTAG+GGG 0.569146 1_2:-47516025 Msa0073670:three_prime_UTR
GAGGTGGAAAGAAGCTATTG+TGG 0.570153 1_2:-47516162 Msa0073670:three_prime_UTR
AGAGTTAGTGAAGAAATTGG+AGG 0.570910 1_2:-47516429 Msa0073670:intron
TTCATTCATCGACAAAGCTG+TGG 0.574795 1_2:-47516510 Msa0073670:CDS
CTAGTACTTACAACTTAGAA+GGG 0.576646 1_2:+47516028 None:intergenic
AATATTGATCTAGTTTATGG+AGG 0.578824 1_2:-47518546 Msa0073670:CDS
GAAGCAACGCCTTCGTGACA+AGG 0.579116 1_2:+47516303 None:intergenic
TCACAAGCTGTTCATGATGG+TGG 0.582768 1_2:-47518495 Msa0073670:CDS
ATGAATCCCAAGTTGAGCCC+AGG 0.585691 1_2:+47516685 None:intergenic
CTGAAGAGTATAACATCGCA+AGG 0.589935 1_2:-47516242 Msa0073670:CDS
ATCGACAAAGCTGTGGAAGA+GGG 0.594245 1_2:-47516503 Msa0073670:CDS
TTTAGTTTACTTGATGTGCA+AGG 0.599214 1_2:-47516209 Msa0073670:three_prime_UTR
CAGCTAACTGGTGAAACGGT+GGG 0.599390 1_2:-47517854 Msa0073670:CDS
ATGGTGGAAGACATGTCATA+GGG 0.603354 1_2:-47518479 Msa0073670:intron
GCAGCTAACTGGTGAAACGG+TGG 0.613685 1_2:-47517855 Msa0073670:intron
CAAGACACTCATGCCTAGAG+AGG 0.614658 1_2:-47518315 Msa0073670:intron
AAGAGTGTCAAAGTTCAAGA+GGG 0.616352 1_2:-47519080 Msa0073670:CDS
AGCAGATATGCATCAAAGGA+AGG 0.629113 1_2:-47517816 Msa0073670:CDS
GATTATGTTCCTTGTCACGA+AGG 0.641151 1_2:-47516312 Msa0073670:CDS
GCTTCTTGAAGTCATAACCT+GGG 0.658696 1_2:-47516702 Msa0073670:CDS
TAGGTGCTGATACAATTATG+TGG 0.681813 1_2:+47516459 None:intergenic
TCTAAGTTGTAAGTACTAGG+GGG 0.696829 1_2:-47516024 Msa0073670:three_prime_UTR
AGGTGGTTATGGGACCCTAG+AGG 0.728214 1_2:-47516726 Msa0073670:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAAAACTTATTTATTTTTTG+TGG - chr1_2:47516310-47516329 Msa0073670:CDS 10.0%
!! ATATATATGAAAAAAACTTT+AGG + chr1_2:47516538-47516557 None:intergenic 10.0%
!! TAAAAGTAATAATAAACAAA+TGG - chr1_2:47517183-47517202 Msa0073670:intron 10.0%
!! TGAATTAGTTAATAATATTT+AGG + chr1_2:47518606-47518625 None:intergenic 10.0%
!!! TTTTTTTTTCTCAAAAAAGA+AGG + chr1_2:47516294-47516313 None:intergenic 15.0%
!!! ATTAAGTTTGAAATGAAAAA+TGG + chr1_2:47516609-47516628 None:intergenic 15.0%
!! AAGAAAAAAGTGAATAATAA+AGG + chr1_2:47517019-47517038 None:intergenic 15.0%
!!! TTGTTAAAGTTATTTTCTTT+TGG - chr1_2:47517119-47517138 Msa0073670:intron 15.0%
!!! TGTTAAAGTTATTTTCTTTT+GGG - chr1_2:47517120-47517139 Msa0073670:intron 15.0%
!!! TTTTAGTAATTAAGTTTGTT+AGG + chr1_2:47517624-47517643 None:intergenic 15.0%
!! TAACAAACTTAATTACTAAA+AGG - chr1_2:47517623-47517642 Msa0073670:intron 15.0%
!! TTAGAAATAGATTACTTAAA+GGG + chr1_2:47519264-47519283 None:intergenic 15.0%
!! TTTAGAAATAGATTACTTAA+AGG + chr1_2:47519265-47519284 None:intergenic 15.0%
!!! ACTTATTTATTTTTTGTGGA+TGG - chr1_2:47516314-47516333 Msa0073670:CDS 20.0%
!!! CTTATTTATTTTTTGTGGAT+GGG - chr1_2:47516315-47516334 Msa0073670:CDS 20.0%
!!! TTATTTATTTTTTGTGGATG+GGG - chr1_2:47516316-47516335 Msa0073670:intron 20.0%
!! ACAAACCATTAAAATTGATT+GGG + chr1_2:47516647-47516666 None:intergenic 20.0%
!!! AGAAATATTGATCTAGTTTA+TGG - chr1_2:47516677-47516696 Msa0073670:CDS 20.0%
!! TCATAAAAATGAAAACTTTG+AGG + chr1_2:47516786-47516805 None:intergenic 20.0%
!! TTAACTTAAAATACAGAACA+AGG + chr1_2:47517074-47517093 None:intergenic 20.0%
!!! AATTTTAGCCAAATATGTTA+GGG + chr1_2:47517866-47517885 None:intergenic 20.0%
!!! AAATTTTAGCCAAATATGTT+AGG + chr1_2:47517867-47517886 None:intergenic 20.0%
!!! TTTTCAAAGACTTTTATTTC+TGG - chr1_2:47518084-47518103 Msa0073670:intron 20.0%
!! GAATTTAATGCAAAAAACAT+AGG + chr1_2:47518454-47518473 None:intergenic 20.0%
!! AAATTTCATTTGTAAAGTAC+TGG - chr1_2:47519119-47519138 Msa0073670:exon 20.0%
!!! AATTTCATTTGTAAAGTACT+GGG - chr1_2:47519120-47519139 Msa0073670:exon 20.0%
!!! AGTAATTTCACATTTTTTTC+AGG + chr1_2:47519151-47519170 None:intergenic 20.0%
!! TAGAAATAGATTACTTAAAG+GGG + chr1_2:47519263-47519282 None:intergenic 20.0%
! TTGCAAGAAACAAATACAAA+TGG - chr1_2:47516107-47516126 Msa0073670:three_prime_UTR 25.0%
! ATTCCTTTGTATATTTCAGT+TGG - chr1_2:47516382-47516401 Msa0073670:intron 25.0%
! TTCCTTTGTATATTTCAGTT+GGG - chr1_2:47516383-47516402 Msa0073670:intron 25.0%
!! ATACTTTAAAAAGCTGAGAA+AGG + chr1_2:47516586-47516605 None:intergenic 25.0%
!! CTTATCCCAATCAATTTTAA+TGG - chr1_2:47516639-47516658 Msa0073670:intron 25.0%
! CACAAACCATTAAAATTGAT+TGG + chr1_2:47516648-47516667 None:intergenic 25.0%
!!! TCAATTTTAATGGTTTGTGA+AGG - chr1_2:47516649-47516668 Msa0073670:intron 25.0%
!! AATATTGATCTAGTTTATGG+AGG - chr1_2:47516680-47516699 Msa0073670:CDS 25.0%
! AAAATACAGAACAAGGAAAT+AGG + chr1_2:47517067-47517086 None:intergenic 25.0%
!!! AAAGTTATTTTCTTTTGGGT+AGG - chr1_2:47517124-47517143 Msa0073670:intron 25.0%
! TGGCAACAATATTAATGATT+AGG + chr1_2:47517658-47517677 None:intergenic 25.0%
! AATCATTAATATTGTTGCCA+AGG - chr1_2:47517658-47517677 Msa0073670:intron 25.0%
! TAGTCAAATAAATATGACAC+TGG - chr1_2:47517754-47517773 Msa0073670:intron 25.0%
! AAAAAATGATCTGACCATAT+TGG - chr1_2:47518322-47518341 Msa0073670:CDS 25.0%
!! ATTTAGGTTCCTTAACAAAA+TGG + chr1_2:47518590-47518609 None:intergenic 25.0%
! AATGTCAAATCTAGTTAAAC+TGG + chr1_2:47518642-47518661 None:intergenic 25.0%
! AAAAGAGTTAGTGAAGAAAT+TGG - chr1_2:47518794-47518813 Msa0073670:intron 25.0%
! TATTATATTTGATTCATCGC+AGG - chr1_2:47518892-47518911 Msa0073670:intron 25.0%
! TTACAAATGAAATTTCTTCC+AGG + chr1_2:47519114-47519133 None:intergenic 25.0%
!! GAAATCAGTTTTCAAAAGAA+GGG + chr1_2:47519179-47519198 None:intergenic 25.0%
CAAATACAAATGGAGACAAA+TGG - chr1_2:47516117-47516136 Msa0073670:three_prime_UTR 30.0%
CAATTCATTTCCAAGTTCAA+TGG + chr1_2:47516226-47516245 None:intergenic 30.0%
CATTGAACTTGGAAATGAAT+TGG - chr1_2:47516224-47516243 Msa0073670:exon 30.0%
AGGAAAAAAAACAGTGTGTA+AGG + chr1_2:47516274-47516293 None:intergenic 30.0%
TCAAGCACAATAGACTATTA+TGG + chr1_2:47516818-47516837 None:intergenic 30.0%
TTGTGCTTGATTGATTATGT+TGG - chr1_2:47516828-47516847 Msa0073670:intron 30.0%
!!! ACTCTTTTGTTTTACTTCAG+TGG - chr1_2:47517214-47517233 Msa0073670:intron 30.0%
AAGAATAGTACACCTTACTT+TGG - chr1_2:47517489-47517508 Msa0073670:intron 30.0%
AAGCATTAAAGACTGAGATA+TGG + chr1_2:47517591-47517610 None:intergenic 30.0%
ACAATATTAATGATTAGGCG+TGG + chr1_2:47517653-47517672 None:intergenic 30.0%
ACAGTGTATCAAAATTACCT+TGG + chr1_2:47517678-47517697 None:intergenic 30.0%
TCTCTAATCATCATAGCATT+AGG + chr1_2:47517803-47517822 None:intergenic 30.0%
AGGAAAGTAGATGCTAAAAA+TGG + chr1_2:47517935-47517954 None:intergenic 30.0%
!! TTTTTAGCATCTACTTTCCT+TGG - chr1_2:47517935-47517954 Msa0073670:intron 30.0%
! TTTTGTACCAAACTTACTCA+TGG - chr1_2:47517969-47517988 Msa0073670:intron 30.0%
ATCAAAACCATGAGTAAGTT+TGG + chr1_2:47517979-47517998 None:intergenic 30.0%
!!! CTCATGGTTTTGATATAGAA+AGG - chr1_2:47517985-47518004 Msa0073670:intron 30.0%
AAATTAGTGACTGTTACAGA+AGG - chr1_2:47518133-47518152 Msa0073670:intron 30.0%
GTGCATTATGTAATCAATCT+CGG - chr1_2:47518252-47518271 Msa0073670:intron 30.0%
GTTGTTCGATTTCAAATCAA+TGG + chr1_2:47518278-47518297 None:intergenic 30.0%
TGTGTGCCATAATTATTGTA+GGG - chr1_2:47518373-47518392 Msa0073670:intron 30.0%
CAGATTCCCTACAATAATTA+TGG + chr1_2:47518382-47518401 None:intergenic 30.0%
TTATTGTAGGGAATCTGTTT+CGG - chr1_2:47518385-47518404 Msa0073670:intron 30.0%
CTTAAGGTCATCTAATAAAC+TGG + chr1_2:47518419-47518438 None:intergenic 30.0%
AACTTATGCAAATTACATGC+AGG - chr1_2:47518480-47518499 Msa0073670:CDS 30.0%
AAATGGTACAAGTCAATTAC+CGG + chr1_2:47518573-47518592 None:intergenic 30.0%
!! TGACTTGTACCATTTTGTTA+AGG - chr1_2:47518578-47518597 Msa0073670:intron 30.0%
! TTCACTAACTCTTTTGATGT+AGG + chr1_2:47518789-47518808 None:intergenic 30.0%
! TTTAGTTTACTTGATGTGCA+AGG - chr1_2:47519017-47519036 Msa0073670:CDS 30.0%
! GAGACTAGATAGAATTTTAG+AGG - chr1_2:47519045-47519064 Msa0073670:CDS 30.0%
!! ACTAGATAGAATTTTAGAGG+TGG - chr1_2:47519048-47519067 Msa0073670:CDS 30.0%
CAGGAAAGAAAAACAGAATA+GGG + chr1_2:47519095-47519114 None:intergenic 30.0%
! GGAAATCAGTTTTCAAAAGA+AGG + chr1_2:47519180-47519199 None:intergenic 30.0%
CTAGTACTTACAACTTAGAA+GGG + chr1_2:47519201-47519220 None:intergenic 30.0%
CTTCTAAGTTGTAAGTACTA+GGG - chr1_2:47519200-47519219 Msa0073670:five_prime_UTR 30.0%
TTCTAAGTTGTAAGTACTAG+GGG - chr1_2:47519201-47519220 Msa0073670:five_prime_UTR 30.0%
!! TAAGAGTGTCAAAGTTCAAG+AGG - chr1_2:47516145-47516164 Msa0073670:three_prime_UTR 35.0%
!! AAGAGTGTCAAAGTTCAAGA+GGG - chr1_2:47516146-47516165 Msa0073670:three_prime_UTR 35.0%
!! TGATAACTACTTTTCTTGCC+AGG + chr1_2:47516195-47516214 None:intergenic 35.0%
GACCCAACTGAAATATACAA+AGG + chr1_2:47516388-47516407 None:intergenic 35.0%
! ATTGATCTAGTTTATGGAGG+AGG - chr1_2:47516683-47516702 Msa0073670:CDS 35.0%
GACAAATAAACCAGTGTCAA+TGG + chr1_2:47516863-47516882 None:intergenic 35.0%
CTGTTCCATTTCTTATCCAT+TGG - chr1_2:47517339-47517358 Msa0073670:intron 35.0%
AGGATCCAATGGATAAGAAA+TGG + chr1_2:47517347-47517366 None:intergenic 35.0%
TCTGTAATGCAACCAAAGTA+AGG + chr1_2:47517504-47517523 None:intergenic 35.0%
AAAGACTGAGATATGGTCAA+TGG + chr1_2:47517584-47517603 None:intergenic 35.0%
! GCTTTGACTCTGAAAAACTA+TGG - chr1_2:47517893-47517912 Msa0073670:intron 35.0%
TCTGAAAAACTATGGTTCTC+TGG - chr1_2:47517901-47517920 Msa0073670:intron 35.0%
ACAAAAACGTCATGATTCCA+AGG + chr1_2:47517955-47517974 None:intergenic 35.0%
CACTATTTCATGACATGTAC+AGG + chr1_2:47518060-47518079 None:intergenic 35.0%
ACTTGTCATTCACTCTTTCT+TGG - chr1_2:47518175-47518194 Msa0073670:intron 35.0%
CTTGTCATTCACTCTTTCTT+GGG - chr1_2:47518176-47518195 Msa0073670:intron 35.0%
GGTGATAAGGGATCTTAATT+TGG - chr1_2:47518230-47518249 Msa0073670:intron 35.0%
!! ACCATATTGGTTTAGATCGA+AGG - chr1_2:47518335-47518354 Msa0073670:intron 35.0%
!! CCATATTGGTTTAGATCGAA+GGG - chr1_2:47518336-47518355 Msa0073670:intron 35.0%
CTGTGTGCCATAATTATTGT+AGG - chr1_2:47518372-47518391 Msa0073670:intron 35.0%
TGCAAAAAACATAGGAGAAC+AGG + chr1_2:47518446-47518465 None:intergenic 35.0%
TTATGCAAATTACATGCAGG+TGG - chr1_2:47518483-47518502 Msa0073670:CDS 35.0%
AAATTACATGCAGGTGGTTA+TGG - chr1_2:47518489-47518508 Msa0073670:CDS 35.0%
AATTACATGCAGGTGGTTAT+GGG - chr1_2:47518490-47518509 Msa0073670:CDS 35.0%
!! TAGGTGCTGATACAATTATG+TGG + chr1_2:47518770-47518789 None:intergenic 35.0%
AGAGTTAGTGAAGAAATTGG+AGG - chr1_2:47518797-47518816 Msa0073670:intron 35.0%
GATGTTATACTCTTCAGGAT+AGG + chr1_2:47518981-47519000 None:intergenic 35.0%
CCAGGAAAGAAAAACAGAAT+AGG + chr1_2:47519096-47519115 None:intergenic 35.0%
!! CCTATTCTGTTTTTCTTTCC+TGG - chr1_2:47519093-47519112 Msa0073670:CDS 35.0%
CCTAGTACTTACAACTTAGA+AGG + chr1_2:47519202-47519221 None:intergenic 35.0%
CCTTCTAAGTTGTAAGTACT+AGG - chr1_2:47519199-47519218 Msa0073670:five_prime_UTR 35.0%
TCTAAGTTGTAAGTACTAGG+GGG - chr1_2:47519202-47519221 Msa0073670:five_prime_UTR 35.0%
! AAGAGGGTTTGTGTCTTTTG+TGG - chr1_2:47516162-47516181 Msa0073670:three_prime_UTR 40.0%
! TTTTGTGGATGGGGTGAAAA+TGG - chr1_2:47516325-47516344 Msa0073670:intron 40.0%
!! AAGCATTGGTCTAATGGGTT+CGG - chr1_2:47516706-47516725 Msa0073670:CDS 40.0%
GTTTCACAAGCTGTTCATGA+TGG - chr1_2:47516728-47516747 Msa0073670:intron 40.0%
! ATGGTGGAAGACATGTCATA+GGG - chr1_2:47516747-47516766 Msa0073670:intron 40.0%
! CTTTTCTCACATACCTCTCT+AGG + chr1_2:47516927-47516946 None:intergenic 40.0%
TAGCTGCAAAAAGGATCCAA+TGG + chr1_2:47517358-47517377 None:intergenic 40.0%
TTCACCAGTTAGCTGCAAAA+AGG + chr1_2:47517367-47517386 None:intergenic 40.0%
TTTGCAGCTAACTGGTGAAA+CGG - chr1_2:47517368-47517387 Msa0073670:intron 40.0%
CTGTAGCAGATATGCATCAA+AGG - chr1_2:47517406-47517425 Msa0073670:intron 40.0%
AGCAGATATGCATCAAAGGA+AGG - chr1_2:47517410-47517429 Msa0073670:intron 40.0%
! GATGCTTTTATTGCCTTACC+AGG - chr1_2:47517453-47517472 Msa0073670:intron 40.0%
! GGTGTACTATTCTTTAGCTC+AGG + chr1_2:47517483-47517502 None:intergenic 40.0%
AGAGAGTGACTCTTCAAAAC+TGG - chr1_2:47517818-47517837 Msa0073670:CDS 40.0%
CCCTTCGATCTAAACCAATA+TGG + chr1_2:47518339-47518358 None:intergenic 40.0%
TAGGAGAACAGGAACACTTA+AGG + chr1_2:47518435-47518454 None:intergenic 40.0%
AGCTTCTTGAAGTCATAACC+TGG - chr1_2:47518523-47518542 Msa0073670:CDS 40.0%
GCTTCTTGAAGTCATAACCT+GGG - chr1_2:47518524-47518543 Msa0073670:CDS 40.0%
ACTTGGGATTCATGACAAAC+CGG - chr1_2:47518551-47518570 Msa0073670:CDS 40.0%
! GTGGGACTAGTAAATGTTGA+TGG - chr1_2:47518675-47518694 Msa0073670:intron 40.0%
TTCATTCATCGACAAAGCTG+TGG - chr1_2:47518716-47518735 Msa0073670:intron 40.0%
GATTATGTTCCTTGTCACGA+AGG - chr1_2:47518914-47518933 Msa0073670:intron 40.0%
CTTGCGATGTTATACTCTTC+AGG + chr1_2:47518986-47519005 None:intergenic 40.0%
! CTGAAGAGTATAACATCGCA+AGG - chr1_2:47518984-47519003 Msa0073670:intron 40.0%
! GTCTTTTGTGGAAGTAGTCC+TGG - chr1_2:47516174-47516193 Msa0073670:three_prime_UTR 45.0%
CAAGATGCTGCCATTGAACT+TGG - chr1_2:47516213-47516232 Msa0073670:three_prime_UTR 45.0%
! GTTTATGGAGGAGGAAGCAT+TGG - chr1_2:47516692-47516711 Msa0073670:CDS 45.0%
!! AGGAGGAAGCATTGGTCTAA+TGG - chr1_2:47516700-47516719 Msa0073670:CDS 45.0%
!! GGAGGAAGCATTGGTCTAAT+GGG - chr1_2:47516701-47516720 Msa0073670:CDS 45.0%
TCACAAGCTGTTCATGATGG+TGG - chr1_2:47516731-47516750 Msa0073670:intron 45.0%
!! GATGGTGGAAGACATGTCAT+AGG - chr1_2:47516746-47516765 Msa0073670:intron 45.0%
GTCTCTTTGTCCATTGACAC+TGG - chr1_2:47516850-47516869 Msa0073670:intron 45.0%
TCTCTAGGCATGAGTGTCTT+GGG + chr1_2:47516912-47516931 None:intergenic 45.0%
! GGATCCTTTTTGCAGCTAAC+TGG - chr1_2:47517360-47517379 Msa0073670:intron 45.0%
! TTCTTTAGCTCAGGCTAACC+TGG + chr1_2:47517474-47517493 None:intergenic 45.0%
GCCTGAGACCCTAACATATT+TGG - chr1_2:47517855-47517874 Msa0073670:intron 45.0%
GCCAAATATGTTAGGGTCTC+AGG + chr1_2:47517859-47517878 None:intergenic 45.0%
AGTGACTGTTACAGAAGGCA+AGG - chr1_2:47518138-47518157 Msa0073670:intron 45.0%
CTCTTCCCTCTATCTTGCAA+GGG + chr1_2:47518204-47518223 None:intergenic 45.0%
TCTCTTCCCTCTATCTTGCA+AGG + chr1_2:47518205-47518224 None:intergenic 45.0%
AAGATAGAGGGAAGAGAGAG+AGG - chr1_2:47518208-47518227 Msa0073670:intron 45.0%
AGATAGAGGGAAGAGAGAGA+GGG - chr1_2:47518209-47518228 Msa0073670:intron 45.0%
GAAGAGAGAGAGGGTGATAA+GGG - chr1_2:47518218-47518237 Msa0073670:intron 45.0%
GACTTCAAGAAGCTCCTCTA+GGG + chr1_2:47518517-47518536 None:intergenic 45.0%
TGACTTCAAGAAGCTCCTCT+AGG + chr1_2:47518518-47518537 None:intergenic 45.0%
TCATAACCTGGGCTCAACTT+GGG - chr1_2:47518535-47518554 Msa0073670:CDS 45.0%
TTTGACATTCCACAACTCGC+AGG - chr1_2:47518653-47518672 Msa0073670:intron 45.0%
ATCGACAAAGCTGTGGAAGA+GGG - chr1_2:47518723-47518742 Msa0073670:intron 45.0%
ACAATTATGTGGCGCGCATT+TGG + chr1_2:47518759-47518778 None:intergenic 45.0%
TTCAAAGTTGAGCTGGCAGA+TGG - chr1_2:47518943-47518962 Msa0073670:intron 45.0%
GAGGTGGAAAGAAGCTATTG+TGG - chr1_2:47519064-47519083 Msa0073670:CDS 45.0%
!!! AATATAAATTTTTTGTTTTT+TGG - chr1_2:47516475-47516494 Msa0073670:CDS 5.0%
!!! TATATTTTTTTTTATATCTA+TGG - chr1_2:47516553-47516572 Msa0073670:CDS 5.0%
CTCTCTAGGCATGAGTGTCT+TGG + chr1_2:47516913-47516932 None:intergenic 50.0%
CAAGACACTCATGCCTAGAG+AGG - chr1_2:47516911-47516930 Msa0073670:intron 50.0%
CAGCTAACTGGTGAAACGGT+GGG - chr1_2:47517372-47517391 Msa0073670:intron 50.0%
GCATCAAAGGAAGGCAGAGA+TGG - chr1_2:47517419-47517438 Msa0073670:intron 50.0%
TAGCTCAGGCTAACCTGGTA+AGG + chr1_2:47517469-47517488 None:intergenic 50.0%
TTAGGGTCTCAGGCAAAGTC+AGG + chr1_2:47517849-47517868 None:intergenic 50.0%
TGGGATCCCTTGCAAGATAG+AGG - chr1_2:47518195-47518214 Msa0073670:intron 50.0%
GGGATCCCTTGCAAGATAGA+GGG - chr1_2:47518196-47518215 Msa0073670:intron 50.0%
GGAAGAGAGAGAGGGTGATA+AGG - chr1_2:47518217-47518236 Msa0073670:intron 50.0%
GTCATAACCTGGGCTCAACT+TGG - chr1_2:47518534-47518553 Msa0073670:CDS 50.0%
! ATGAATCCCAAGTTGAGCCC+AGG + chr1_2:47518544-47518563 None:intergenic 50.0%
ACATTCCACAACTCGCAGGT+GGG - chr1_2:47518657-47518676 Msa0073670:intron 50.0%
CATCGACAAAGCTGTGGAAG+AGG - chr1_2:47518722-47518741 Msa0073670:intron 50.0%
GCGTTGCTTCAAAGTTGAGC+TGG - chr1_2:47518936-47518955 Msa0073670:intron 50.0%
GCAGCTAACTGGTGAAACGG+TGG - chr1_2:47517371-47517390 Msa0073670:intron 55.0%
AGGTGGTTATGGGACCCTAG+AGG - chr1_2:47518500-47518519 Msa0073670:CDS 55.0%
GACATTCCACAACTCGCAGG+TGG - chr1_2:47518656-47518675 Msa0073670:intron 55.0%
GAAGCAACGCCTTCGTGACA+AGG + chr1_2:47518926-47518945 None:intergenic 55.0%
CTAGTCCCACCTGCGAGTTG+TGG + chr1_2:47518665-47518684 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr1_2 gene 47515960 47519288 47515960 ID=Msa0073670;Name=Msa0073670
chr1_2 mRNA 47515960 47519288 47515960 ID=Msa0073670-mRNA-1;Parent=Msa0073670;Name=Msa0073670-mRNA-1;_AED=0.10;_eAED=0.10;_QI=166|1|1|1|1|1|7|279|219
chr1_2 exon 47515960 47516334 47515960 ID=Msa0073670-mRNA-1:exon:14499;Parent=Msa0073670-mRNA-1
chr1_2 exon 47516430 47516573 47516430 ID=Msa0073670-mRNA-1:exon:14498;Parent=Msa0073670-mRNA-1
chr1_2 exon 47516676 47516746 47516676 ID=Msa0073670-mRNA-1:exon:14497;Parent=Msa0073670-mRNA-1
chr1_2 exon 47517774 47517873 47517774 ID=Msa0073670-mRNA-1:exon:14496;Parent=Msa0073670-mRNA-1
chr1_2 exon 47518316 47518346 47518316 ID=Msa0073670-mRNA-1:exon:14495;Parent=Msa0073670-mRNA-1
chr1_2 exon 47518480 47518577 47518480 ID=Msa0073670-mRNA-1:exon:14494;Parent=Msa0073670-mRNA-1
chr1_2 exon 47519003 47519288 47519003 ID=Msa0073670-mRNA-1:exon:14493;Parent=Msa0073670-mRNA-1
chr1_2 five_prime_UTR 47519123 47519288 47519123 ID=Msa0073670-mRNA-1:five_prime_utr;Parent=Msa0073670-mRNA-1
chr1_2 CDS 47519003 47519122 47519003 ID=Msa0073670-mRNA-1:cds;Parent=Msa0073670-mRNA-1
chr1_2 CDS 47518480 47518577 47518480 ID=Msa0073670-mRNA-1:cds;Parent=Msa0073670-mRNA-1
chr1_2 CDS 47518316 47518346 47518316 ID=Msa0073670-mRNA-1:cds;Parent=Msa0073670-mRNA-1
chr1_2 CDS 47517774 47517873 47517774 ID=Msa0073670-mRNA-1:cds;Parent=Msa0073670-mRNA-1
chr1_2 CDS 47516676 47516746 47516676 ID=Msa0073670-mRNA-1:cds;Parent=Msa0073670-mRNA-1
chr1_2 CDS 47516430 47516573 47516430 ID=Msa0073670-mRNA-1:cds;Parent=Msa0073670-mRNA-1
chr1_2 CDS 47516239 47516334 47516239 ID=Msa0073670-mRNA-1:cds;Parent=Msa0073670-mRNA-1
chr1_2 three_prime_UTR 47515960 47516238 47515960 ID=Msa0073670-mRNA-1:three_prime_utr;Parent=Msa0073670-mRNA-1
Gene Sequence

>Msa0073670

ATGGAGACAAATGGTGAGATAAGAGTGTCAAAGTTCAAGAGGGTTTGTGTCTTTTGTGGAAGTAGTCCTGGCAAGAAAAGTAGTTATCAAGATGCTGCCATTGAACTTGGAAATGAATTGGTGTCAAGAAATATTGATCTAGTTTATGGAGGAGGAAGCATTGGTCTAATGGGTTCGGTTTCACAAGCTGTTCATGATGGTGGAAGACATGTCATAGGAGTTATTCCCAAGACACTCATGCCTAGAGAGCTAACTGGTGAAACGGTGGGAGAAGTAAAAGCTGTAGCAGATATGCATCAAAGGAAGGCAGAGATGGCTAAGCATTCAGATGCTTTTATTGCCTTACCAGGTGGTTATGGGACCCTAGAGGAGCTTCTTGAAGTCATAACCTGGGCTCAACTTGGGATTCATGACAAACCGGTGGGACTAGTAAATGTTGATGGATACTTTAATTCGTTACTTTCATTCATCGACAAAGCTGTGGAAGAGGGATTTATCAGTCCAAATGCGCGCCACATAATTGTATCAGCACCTACATCAAAAGAGTTAGTGAAGAAATTGGAGGATTATGTTCCTTGTCACGAAGGCGTTGCTTCAAAGTTGAGCTGGCAGATGGAACAAGAGCTAGCCTATCCTGAAGAGTATAACATCGCAAGGTAG

Protein sequence

>Msa0073670

METNGEIRVSKFKRVCVFCGSSPGKKSSYQDAAIELGNELVSRNIDLVYGGGSIGLMGSVSQAVHDGGRHVIGVIPKTLMPRELTGETVGEVKAVADMHQRKAEMAKHSDAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLVNVDGYFNSLLSFIDKAVEEGFISPNARHIIVSAPTSKELVKKLEDYVPCHEGVASKLSWQMEQELAYPEEYNIAR*