AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1322960


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1322960 MtrunA17_Chr8g0355721 92.308 156 12 0 1 156 1 156 1.25e-105 298
Msa1322960 MtrunA17_Chr8g0355741 81.529 157 28 1 1 156 1 157 4.31e-93 266
Msa1322960 MtrunA17_Chr8g0355661 78.344 157 32 2 1 156 1 156 2.44e-88 254
Msa1322960 MtrunA17_Chr8g0355781 76.316 152 36 0 1 152 1 152 1.38e-86 250
Msa1322960 MtrunA17_Chr8g0355811 74.510 153 38 1 1 153 1 152 8.06e-84 243
Msa1322960 MtrunA17_Chr8g0355761 75.000 152 38 0 1 152 1 152 1.12e-83 242
Msa1322960 MtrunA17_Chr8g0355641 69.872 156 46 1 1 155 1 156 9.29e-81 235
Msa1322960 MtrunA17_Chr8g0355821 70.588 153 44 1 1 153 1 152 5.55e-80 233
Msa1322960 MtrunA17_Chr8g0355801 70.588 153 44 1 1 153 1 152 3.90e-78 228
Msa1322960 MtrunA17_Chr8g0355791 69.281 153 46 1 1 153 1 152 4.48e-76 223
Msa1322960 MtrunA17_Chr8g0355771 67.974 153 48 1 1 153 1 152 8.82e-75 220
Msa1322960 MtrunA17_Chr1g0160371 43.137 153 84 2 1 151 1 152 1.01e-40 134
Msa1322960 MtrunA17_Chr1g0160381 40.523 153 88 2 1 151 5 156 2.38e-40 133
Msa1322960 MtrunA17_Chr1g0160391 37.179 156 90 4 1 149 1 155 3.60e-29 104
Msa1322960 MtrunA17_Chr8g0339261 35.616 146 91 3 6 150 8 151 1.23e-28 103
Msa1322960 MtrunA17_Chr1g0160801 38.514 148 82 5 7 152 7 147 4.09e-26 96.7
Msa1322960 MtrunA17_Chr1g0160351 45.161 93 49 1 61 151 1 93 1.26e-22 85.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1322960 AT5G28010.1 36.242 149 92 3 3 149 15 162 7.27e-27 99.4
Msa1322960 AT5G28010.2 36.242 149 92 3 3 149 15 162 7.27e-27 99.4
Msa1322960 AT1G70890.1 37.584 149 90 3 3 149 7 154 2.79e-26 97.8
Msa1322960 AT1G70830.5 34.899 149 94 3 3 149 22 169 5.49e-24 92.0
Msa1322960 AT1G70830.3 34.899 149 94 3 3 149 22 169 1.02e-23 92.4
Msa1322960 AT1G70840.1 32.886 149 97 3 3 149 20 167 2.33e-23 90.5
Msa1322960 AT1G70830.2 34.899 149 94 3 3 149 22 169 3.61e-23 92.0
Msa1322960 AT5G28000.1 32.886 149 97 3 3 149 13 160 9.62e-23 88.6
Msa1322960 AT1G70830.1 34.899 149 94 3 3 149 22 169 9.92e-23 92.4
Msa1322960 AT1G70830.1 33.557 149 96 3 3 149 184 331 3.60e-21 88.2
Msa1322960 AT1G70870.1 35.948 153 81 4 1 151 1 138 8.70e-22 85.5
Msa1322960 AT1G70830.4 33.557 149 96 3 3 149 137 284 1.31e-21 88.6
Msa1322960 AT1G70830.4 30.435 92 63 1 59 149 31 122 6.47e-11 59.3
Msa1322960 AT1G70850.2 32.886 149 97 3 3 149 9 156 1.67e-21 87.4
Msa1322960 AT1G23120.1 30.769 143 94 3 7 149 7 144 4.42e-21 84.0
Msa1322960 AT1G70850.3 32.886 149 97 3 3 149 9 156 4.71e-21 87.4
Msa1322960 AT1G70850.3 33.094 139 90 3 13 149 175 312 9.05e-20 84.0
Msa1322960 AT1G70850.1 32.886 149 97 3 3 149 9 156 4.71e-21 87.4
Msa1322960 AT1G70850.1 33.094 139 90 3 13 149 175 312 9.05e-20 84.0
Msa1322960 AT4G23670.1 34.641 153 97 3 1 152 1 151 7.56e-21 83.6
Msa1322960 AT1G23130.1 30.405 148 101 2 3 149 10 156 1.21e-20 83.2
Msa1322960 AT1G23120.2 30.769 143 94 3 7 149 57 194 1.30e-20 84.0
Msa1322960 AT1G70880.1 30.872 149 100 3 3 149 8 155 5.31e-20 81.6
Msa1322960 AT2G01520.1 32.026 153 101 3 1 152 1 151 7.42e-19 78.2
Msa1322960 AT4G23680.1 32.026 153 101 3 1 152 1 151 2.92e-18 76.6
Msa1322960 AT1G14930.1 32.298 161 92 5 1 153 1 152 1.15e-17 75.5
Msa1322960 AT2G01530.1 32.026 153 101 3 1 152 1 151 2.27e-17 74.3
Msa1322960 AT4G14060.1 32.680 153 100 3 1 152 1 151 2.86e-17 74.3
Msa1322960 AT1G35260.1 28.966 145 99 3 7 149 6 148 3.74e-17 73.9
Msa1322960 AT1G24020.1 32.692 156 103 2 1 155 1 155 5.09e-16 71.2
Msa1322960 AT1G24020.2 32.692 156 103 2 1 155 1 155 5.09e-16 71.2
Msa1322960 AT1G30990.1 32.000 150 98 4 1 149 1 147 2.18e-15 69.3
Msa1322960 AT1G14940.1 30.000 150 102 3 1 149 1 148 3.75e-14 66.2
Msa1322960 AT3G26460.1 32.051 156 98 5 1 152 1 152 8.39e-14 65.1
Msa1322960 AT1G14950.1 28.947 152 105 3 1 151 1 150 1.37e-13 64.7
Msa1322960 AT1G35310.1 25.362 138 100 3 13 149 12 147 2.00e-12 61.6
Msa1322960 AT1G14960.1 28.571 154 107 3 1 153 1 152 8.49e-12 60.1
Msa1322960 AT3G26450.1 27.273 154 108 4 1 152 1 152 2.96e-11 58.5

Find 41 sgRNAs with CRISPR-Local

Find 150 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATGGCACTGCTGCTGCTAAA+TGG 0.310932 8_4:-30521256 Msa1322960:CDS
CTTCCCTTTCTTCTAAGAAA+TGG 0.349077 8_4:-30522380 Msa1322960:exon
TATGTGATGAAATCAATAAA+TGG 0.369456 8_4:-30520923 Msa1322960:three_prime_UTR
CACCCTTATCAATGACTTCA+AGG 0.380806 8_4:+30521279 None:intergenic
TTATAGAGCTATCTTTGCTT+TGG 0.392094 8_4:+30521136 None:intergenic
AATTAGTGTGATATTTGTAA+TGG 0.409729 8_4:-30521039 Msa1322960:three_prime_UTR
ATATTGTTGCATATGCATAT+TGG 0.412178 8_4:-30521015 Msa1322960:three_prime_UTR
TAGTAATGGGTTATTGCATT+GGG 0.416848 8_4:-30521089 Msa1322960:three_prime_UTR
TGTAACAAATAACTAGTAAT+GGG 0.422186 8_4:-30521102 Msa1322960:three_prime_UTR
AGCACCATTTCTTAGAAGAA+AGG 0.435379 8_4:+30522376 None:intergenic
AAACACTGGACTTACGTCAT+AGG 0.436108 8_4:-30522196 Msa1322960:intron
TTCTAAGAAATGGTGCTCTC+TGG 0.436928 8_4:-30522370 Msa1322960:exon
CATCCTTGAAGTCATTGATA+AGG 0.445764 8_4:-30521282 Msa1322960:CDS
AAGTATTCCATGTAGCCATT+TGG 0.448595 8_4:+30521194 None:intergenic
CTTCTATGTGATGTTTGTAA+TGG 0.450639 8_4:-30520992 Msa1322960:three_prime_UTR
CTAGTAATGGGTTATTGCAT+TGG 0.451009 8_4:-30521090 Msa1322960:three_prime_UTR
AACACTTATAAGCTCTTTGG+TGG 0.457999 8_4:-30521338 Msa1322960:CDS
GCACCATTTCTTAGAAGAAA+GGG 0.460369 8_4:+30522377 None:intergenic
ATGTAACAAATAACTAGTAA+TGG 0.468583 8_4:-30521103 Msa1322960:three_prime_UTR
AACTTCATGAAGGTGAAGAT+TGG 0.478377 8_4:-30522237 Msa1322960:CDS
GGTAAGCTCAGTACTGAAGT+TGG 0.490802 8_4:-30522349 Msa1322960:CDS
AATGGGTTATTGCATTGGGT+TGG 0.493837 8_4:-30521085 Msa1322960:three_prime_UTR
ATCCTTGAAGTCATTGATAA+GGG 0.494628 8_4:-30521281 Msa1322960:CDS
AGATATTGATGAGCACTATA+AGG 0.500590 8_4:-30521315 Msa1322960:CDS
GAACAGATTGTAGAACTTGT+CGG 0.501167 8_4:+30522312 None:intergenic
TATTCCATGTAGCCATTTGG+AGG 0.517921 8_4:+30521197 None:intergenic
AGATTGGCATCACACTGATT+CGG 0.519723 8_4:-30522221 Msa1322960:CDS
AATGGCTACATGGAATACTT+TGG 0.525683 8_4:-30521191 Msa1322960:CDS
TGACCCTCCAAATGGCTACA+TGG 0.526835 8_4:-30521201 Msa1322960:CDS
GAGGATATTGACCCTCCAAA+TGG 0.540200 8_4:-30521209 Msa1322960:CDS
TATGATGAACTCTTTCACAA+AGG 0.552779 8_4:+30522263 None:intergenic
ACACTTTCATCAACTCACAT+AGG 0.573859 8_4:-30522421 None:intergenic
GAAGTCATTGATAAGGGTGA+TGG 0.579318 8_4:-30521275 Msa1322960:CDS
ATCATAATTCACAGATGGCA+AGG 0.582682 8_4:-30521411 Msa1322960:intron
CATCATACAAAACTTCATGA+AGG 0.606616 8_4:-30522247 Msa1322960:CDS
ACACTGATTCGGTTAAACAC+TGG 0.614381 8_4:-30522210 Msa1322960:CDS
ATTCCATGTAGCCATTTGGA+GGG 0.625101 8_4:+30521198 None:intergenic
AGATTGTAGAACTTGTCGGC+GGG 0.646397 8_4:+30522316 None:intergenic
TGAATATGAAAAGATCAATG+AGG 0.667026 8_4:-30521228 Msa1322960:CDS
CAGATTGTAGAACTTGTCGG+CGG 0.688816 8_4:+30522315 None:intergenic
AGTGTGATGTCTGTACATGA+CGG 0.731855 8_4:-30520965 Msa1322960:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AGGAATAATAAATATTTATA+AGG + chr8_4:30521751-30521770 None:intergenic 10.0%
!!! ATAGTTTATTTGTTAAAAAA+TGG - chr8_4:30521815-30521834 Msa1322960:intron 10.0%
!!! TAGTTTATTTGTTAAAAAAT+GGG - chr8_4:30521816-30521835 Msa1322960:intron 10.0%
!! AGGAATAATAAATATTTATA+AGG + chr8_4:30521751-30521770 None:intergenic 10.0%
!!! ATAGTTTATTTGTTAAAAAA+TGG - chr8_4:30521815-30521834 Msa1322960:intron 10.0%
!!! TAGTTTATTTGTTAAAAAAT+GGG - chr8_4:30521816-30521835 Msa1322960:intron 10.0%
!! AATTAAATAAGATGATGATT+TGG + chr8_4:30521183-30521202 None:intergenic 15.0%
!! AAAAAAAATCAACAATCATT+TGG - chr8_4:30521508-30521527 Msa1322960:intron 15.0%
!! AAAAAAATCAACAATCATTT+GGG - chr8_4:30521509-30521528 Msa1322960:intron 15.0%
!! ACAAATAAAAATGAAAACTT+TGG + chr8_4:30521870-30521889 None:intergenic 15.0%
!! AATTAAATAAGATGATGATT+TGG + chr8_4:30521183-30521202 None:intergenic 15.0%
!! AAAAAAAATCAACAATCATT+TGG - chr8_4:30521508-30521527 Msa1322960:intron 15.0%
!! AAAAAAATCAACAATCATTT+GGG - chr8_4:30521509-30521528 Msa1322960:intron 15.0%
!! ACAAATAAAAATGAAAACTT+TGG + chr8_4:30521870-30521889 None:intergenic 15.0%
!!! TGTTGATTTTTTTTGTCATA+AGG + chr8_4:30521502-30521521 None:intergenic 20.0%
!! ATGTAACAAATAACTAGTAA+TGG - chr8_4:30522214-30522233 Msa1322960:CDS 20.0%
!! TGTAACAAATAACTAGTAAT+GGG - chr8_4:30522215-30522234 Msa1322960:CDS 20.0%
!! AATTAGTGTGATATTTGTAA+TGG - chr8_4:30522278-30522297 Msa1322960:CDS 20.0%
!! TATGTGATGAAATCAATAAA+TGG - chr8_4:30522394-30522413 Msa1322960:five_prime_UTR 20.0%
!!! TGTTGATTTTTTTTGTCATA+AGG + chr8_4:30521502-30521521 None:intergenic 20.0%
!! ATGTAACAAATAACTAGTAA+TGG - chr8_4:30522214-30522233 Msa1322960:CDS 20.0%
!! TGTAACAAATAACTAGTAAT+GGG - chr8_4:30522215-30522234 Msa1322960:CDS 20.0%
!! AATTAGTGTGATATTTGTAA+TGG - chr8_4:30522278-30522297 Msa1322960:CDS 20.0%
!! TATGTGATGAAATCAATAAA+TGG - chr8_4:30522394-30522413 Msa1322960:five_prime_UTR 20.0%
! ATAAGAAAGAAACAAGTACA+TGG - chr8_4:30521289-30521308 Msa1322960:CDS 25.0%
! TTGGGAAGAAAAAAAAATCA+GGG + chr8_4:30521372-30521391 None:intergenic 25.0%
! TTTGGGAAGAAAAAAAAATC+AGG + chr8_4:30521373-30521392 None:intergenic 25.0%
!! CTATCTTGAAAATGGTTTTT+GGG + chr8_4:30521390-30521409 None:intergenic 25.0%
!! TCTATCTTGAAAATGGTTTT+TGG + chr8_4:30521391-30521410 None:intergenic 25.0%
! AGATTATGAGATCTCAAAAA+TGG - chr8_4:30521605-30521624 Msa1322960:intron 25.0%
! AACCACAGTTATTCTTTATA+TGG + chr8_4:30521726-30521745 None:intergenic 25.0%
! AAAAACACTTATAAGCTCTT+TGG - chr8_4:30521976-30521995 Msa1322960:intron 25.0%
! TGAATATGAAAAGATCAATG+AGG - chr8_4:30522089-30522108 Msa1322960:intron 25.0%
! ATATTGTTGCATATGCATAT+TGG - chr8_4:30522302-30522321 Msa1322960:CDS 25.0%
! ATAAGAAAGAAACAAGTACA+TGG - chr8_4:30521289-30521308 Msa1322960:CDS 25.0%
! TTGGGAAGAAAAAAAAATCA+GGG + chr8_4:30521372-30521391 None:intergenic 25.0%
! TTTGGGAAGAAAAAAAAATC+AGG + chr8_4:30521373-30521392 None:intergenic 25.0%
!! CTATCTTGAAAATGGTTTTT+GGG + chr8_4:30521390-30521409 None:intergenic 25.0%
!! TCTATCTTGAAAATGGTTTT+TGG + chr8_4:30521391-30521410 None:intergenic 25.0%
! AGATTATGAGATCTCAAAAA+TGG - chr8_4:30521605-30521624 Msa1322960:intron 25.0%
! AACCACAGTTATTCTTTATA+TGG + chr8_4:30521726-30521745 None:intergenic 25.0%
! AAAAACACTTATAAGCTCTT+TGG - chr8_4:30521976-30521995 Msa1322960:intron 25.0%
! TGAATATGAAAAGATCAATG+AGG - chr8_4:30522089-30522108 Msa1322960:intron 25.0%
! ATATTGTTGCATATGCATAT+TGG - chr8_4:30522302-30522321 Msa1322960:CDS 25.0%
TATGATGAACTCTTTCACAA+AGG + chr8_4:30521057-30521076 None:intergenic 30.0%
CATCATACAAAACTTCATGA+AGG - chr8_4:30521070-30521089 Msa1322960:three_prime_UTR 30.0%
TACATTCTACAAACCAAACA+TGG - chr8_4:30521342-30521361 Msa1322960:CDS 30.0%
TGGGAAGAAAAAAAAATCAG+GGG + chr8_4:30521371-30521390 None:intergenic 30.0%
! TGAAGCATCTATCTTGAAAA+TGG + chr8_4:30521398-30521417 None:intergenic 30.0%
AACATAGTCAAAAGTAGAAG+AGG + chr8_4:30521433-30521452 None:intergenic 30.0%
!! CTACTTTTGACTATGTTGAA+CGG - chr8_4:30521436-30521455 Msa1322960:intron 30.0%
!! TACTTTTGACTATGTTGAAC+GGG - chr8_4:30521437-30521456 Msa1322960:intron 30.0%
! TTTTTGTCATAAGGTTCTCT+GGG + chr8_4:30521493-30521512 None:intergenic 30.0%
!!! TTTTTTGTCATAAGGTTCTC+TGG + chr8_4:30521494-30521513 None:intergenic 30.0%
AGCCATATAAAGAATAACTG+TGG - chr8_4:30521721-30521740 Msa1322960:intron 30.0%
AGATATTGATGAGCACTATA+AGG - chr8_4:30522002-30522021 Msa1322960:intron 30.0%
ATCCTTGAAGTCATTGATAA+GGG - chr8_4:30522036-30522055 Msa1322960:intron 30.0%
TTATAGAGCTATCTTTGCTT+TGG + chr8_4:30522184-30522203 None:intergenic 30.0%
!! TAGTAATGGGTTATTGCATT+GGG - chr8_4:30522228-30522247 Msa1322960:CDS 30.0%
CTTCTATGTGATGTTTGTAA+TGG - chr8_4:30522325-30522344 Msa1322960:CDS 30.0%
TATGATGAACTCTTTCACAA+AGG + chr8_4:30521057-30521076 None:intergenic 30.0%
CATCATACAAAACTTCATGA+AGG - chr8_4:30521070-30521089 Msa1322960:three_prime_UTR 30.0%
TACATTCTACAAACCAAACA+TGG - chr8_4:30521342-30521361 Msa1322960:CDS 30.0%
TGGGAAGAAAAAAAAATCAG+GGG + chr8_4:30521371-30521390 None:intergenic 30.0%
! TGAAGCATCTATCTTGAAAA+TGG + chr8_4:30521398-30521417 None:intergenic 30.0%
AACATAGTCAAAAGTAGAAG+AGG + chr8_4:30521433-30521452 None:intergenic 30.0%
!! CTACTTTTGACTATGTTGAA+CGG - chr8_4:30521436-30521455 Msa1322960:intron 30.0%
!! TACTTTTGACTATGTTGAAC+GGG - chr8_4:30521437-30521456 Msa1322960:intron 30.0%
! TTTTTGTCATAAGGTTCTCT+GGG + chr8_4:30521493-30521512 None:intergenic 30.0%
!!! TTTTTTGTCATAAGGTTCTC+TGG + chr8_4:30521494-30521513 None:intergenic 30.0%
AGCCATATAAAGAATAACTG+TGG - chr8_4:30521721-30521740 Msa1322960:intron 30.0%
AGATATTGATGAGCACTATA+AGG - chr8_4:30522002-30522021 Msa1322960:intron 30.0%
ATCCTTGAAGTCATTGATAA+GGG - chr8_4:30522036-30522055 Msa1322960:intron 30.0%
TTATAGAGCTATCTTTGCTT+TGG + chr8_4:30522184-30522203 None:intergenic 30.0%
!! TAGTAATGGGTTATTGCATT+GGG - chr8_4:30522228-30522247 Msa1322960:CDS 30.0%
CTTCTATGTGATGTTTGTAA+TGG - chr8_4:30522325-30522344 Msa1322960:CDS 30.0%
! CTTCCCTTTCTTCTAAGAAA+TGG - chr8_4:30520937-30520956 Msa1322960:three_prime_UTR 35.0%
GCACCATTTCTTAGAAGAAA+GGG + chr8_4:30520943-30520962 None:intergenic 35.0%
AGCACCATTTCTTAGAAGAA+AGG + chr8_4:30520944-30520963 None:intergenic 35.0%
GAACAGATTGTAGAACTTGT+CGG + chr8_4:30521008-30521027 None:intergenic 35.0%
AACTTCATGAAGGTGAAGAT+TGG - chr8_4:30521080-30521099 Msa1322960:three_prime_UTR 35.0%
!! TGATGATTTGGTTATCGATC+AGG + chr8_4:30521171-30521190 None:intergenic 35.0%
! TTTTGTCATAAGGTTCTCTG+GGG + chr8_4:30521492-30521511 None:intergenic 35.0%
ATCTGTGAATTATGATGGCA+CGG + chr8_4:30521902-30521921 None:intergenic 35.0%
TTGCCATCTGTGAATTATGA+TGG + chr8_4:30521907-30521926 None:intergenic 35.0%
ATCATAATTCACAGATGGCA+AGG - chr8_4:30521906-30521925 Msa1322960:intron 35.0%
AACACTTATAAGCTCTTTGG+TGG - chr8_4:30521979-30521998 Msa1322960:intron 35.0%
CATCCTTGAAGTCATTGATA+AGG - chr8_4:30522035-30522054 Msa1322960:intron 35.0%
AAGTATTCCATGTAGCCATT+TGG + chr8_4:30522126-30522145 None:intergenic 35.0%
AATGGCTACATGGAATACTT+TGG - chr8_4:30522126-30522145 Msa1322960:intron 35.0%
!! CTAGTAATGGGTTATTGCAT+TGG - chr8_4:30522227-30522246 Msa1322960:CDS 35.0%
! CTTCCCTTTCTTCTAAGAAA+TGG - chr8_4:30520937-30520956 Msa1322960:three_prime_UTR 35.0%
GCACCATTTCTTAGAAGAAA+GGG + chr8_4:30520943-30520962 None:intergenic 35.0%
AGCACCATTTCTTAGAAGAA+AGG + chr8_4:30520944-30520963 None:intergenic 35.0%
GAACAGATTGTAGAACTTGT+CGG + chr8_4:30521008-30521027 None:intergenic 35.0%
AACTTCATGAAGGTGAAGAT+TGG - chr8_4:30521080-30521099 Msa1322960:three_prime_UTR 35.0%
!! TGATGATTTGGTTATCGATC+AGG + chr8_4:30521171-30521190 None:intergenic 35.0%
! TTTTGTCATAAGGTTCTCTG+GGG + chr8_4:30521492-30521511 None:intergenic 35.0%
ATCTGTGAATTATGATGGCA+CGG + chr8_4:30521902-30521921 None:intergenic 35.0%
TTGCCATCTGTGAATTATGA+TGG + chr8_4:30521907-30521926 None:intergenic 35.0%
ATCATAATTCACAGATGGCA+AGG - chr8_4:30521906-30521925 Msa1322960:intron 35.0%
AACACTTATAAGCTCTTTGG+TGG - chr8_4:30521979-30521998 Msa1322960:intron 35.0%
CATCCTTGAAGTCATTGATA+AGG - chr8_4:30522035-30522054 Msa1322960:intron 35.0%
AAGTATTCCATGTAGCCATT+TGG + chr8_4:30522126-30522145 None:intergenic 35.0%
AATGGCTACATGGAATACTT+TGG - chr8_4:30522126-30522145 Msa1322960:intron 35.0%
!! CTAGTAATGGGTTATTGCAT+TGG - chr8_4:30522227-30522246 Msa1322960:CDS 35.0%
! TTCTAAGAAATGGTGCTCTC+TGG - chr8_4:30520947-30520966 Msa1322960:three_prime_UTR 40.0%
! AGATTGGCATCACACTGATT+CGG - chr8_4:30521096-30521115 Msa1322960:three_prime_UTR 40.0%
!! ACACTGATTCGGTTAAACAC+TGG - chr8_4:30521107-30521126 Msa1322960:three_prime_UTR 40.0%
AAACACTGGACTTACGTCAT+AGG - chr8_4:30521121-30521140 Msa1322960:exon 40.0%
AAATCAGGGGTAACCATGTT+TGG + chr8_4:30521358-30521377 None:intergenic 40.0%
! ATAAGGTTCTCTGGGGAATA+TGG + chr8_4:30521485-30521504 None:intergenic 40.0%
TCTGTGAATTATGATGGCAC+GGG + chr8_4:30521901-30521920 None:intergenic 40.0%
GTGCCATCATAATTCACAGA+TGG - chr8_4:30521901-30521920 Msa1322960:intron 40.0%
CACCCTTATCAATGACTTCA+AGG + chr8_4:30522041-30522060 None:intergenic 40.0%
GAAGTCATTGATAAGGGTGA+TGG - chr8_4:30522042-30522061 Msa1322960:intron 40.0%
ATTCCATGTAGCCATTTGGA+GGG + chr8_4:30522122-30522141 None:intergenic 40.0%
TATTCCATGTAGCCATTTGG+AGG + chr8_4:30522123-30522142 None:intergenic 40.0%
!! AATGGGTTATTGCATTGGGT+TGG - chr8_4:30522232-30522251 Msa1322960:CDS 40.0%
AGTGTGATGTCTGTACATGA+CGG - chr8_4:30522352-30522371 Msa1322960:CDS 40.0%
! TTCTAAGAAATGGTGCTCTC+TGG - chr8_4:30520947-30520966 Msa1322960:three_prime_UTR 40.0%
! AGATTGGCATCACACTGATT+CGG - chr8_4:30521096-30521115 Msa1322960:three_prime_UTR 40.0%
!! ACACTGATTCGGTTAAACAC+TGG - chr8_4:30521107-30521126 Msa1322960:three_prime_UTR 40.0%
AAACACTGGACTTACGTCAT+AGG - chr8_4:30521121-30521140 Msa1322960:exon 40.0%
AAATCAGGGGTAACCATGTT+TGG + chr8_4:30521358-30521377 None:intergenic 40.0%
! ATAAGGTTCTCTGGGGAATA+TGG + chr8_4:30521485-30521504 None:intergenic 40.0%
TCTGTGAATTATGATGGCAC+GGG + chr8_4:30521901-30521920 None:intergenic 40.0%
GTGCCATCATAATTCACAGA+TGG - chr8_4:30521901-30521920 Msa1322960:intron 40.0%
CACCCTTATCAATGACTTCA+AGG + chr8_4:30522041-30522060 None:intergenic 40.0%
GAAGTCATTGATAAGGGTGA+TGG - chr8_4:30522042-30522061 Msa1322960:intron 40.0%
ATTCCATGTAGCCATTTGGA+GGG + chr8_4:30522122-30522141 None:intergenic 40.0%
TATTCCATGTAGCCATTTGG+AGG + chr8_4:30522123-30522142 None:intergenic 40.0%
!! AATGGGTTATTGCATTGGGT+TGG - chr8_4:30522232-30522251 Msa1322960:CDS 40.0%
AGTGTGATGTCTGTACATGA+CGG - chr8_4:30522352-30522371 Msa1322960:CDS 40.0%
! GGTAAGCTCAGTACTGAAGT+TGG - chr8_4:30520968-30520987 Msa1322960:three_prime_UTR 45.0%
AGATTGTAGAACTTGTCGGC+GGG + chr8_4:30521004-30521023 None:intergenic 45.0%
CAGATTGTAGAACTTGTCGG+CGG + chr8_4:30521005-30521024 None:intergenic 45.0%
GAGGATATTGACCCTCCAAA+TGG - chr8_4:30522108-30522127 Msa1322960:intron 45.0%
! GGTAAGCTCAGTACTGAAGT+TGG - chr8_4:30520968-30520987 Msa1322960:three_prime_UTR 45.0%
AGATTGTAGAACTTGTCGGC+GGG + chr8_4:30521004-30521023 None:intergenic 45.0%
CAGATTGTAGAACTTGTCGG+CGG + chr8_4:30521005-30521024 None:intergenic 45.0%
GAGGATATTGACCCTCCAAA+TGG - chr8_4:30522108-30522127 Msa1322960:intron 45.0%
!!! ATATTTTTGTATAAAAAAAA+AGG + chr8_4:30521771-30521790 None:intergenic 5.0%
!!! TTTTATACAAAAATATTTAT+TGG - chr8_4:30521775-30521794 Msa1322960:intron 5.0%
!!! ATATTTTTGTATAAAAAAAA+AGG + chr8_4:30521771-30521790 None:intergenic 5.0%
!!! TTTTATACAAAAATATTTAT+TGG - chr8_4:30521775-30521794 Msa1322960:intron 5.0%
ATGGCACTGCTGCTGCTAAA+TGG - chr8_4:30522061-30522080 Msa1322960:intron 50.0%
TGACCCTCCAAATGGCTACA+TGG - chr8_4:30522116-30522135 Msa1322960:intron 50.0%
ATGGCACTGCTGCTGCTAAA+TGG - chr8_4:30522061-30522080 Msa1322960:intron 50.0%
TGACCCTCCAAATGGCTACA+TGG - chr8_4:30522116-30522135 Msa1322960:intron 50.0%
Chromosome Type Strat End Strand Name
chr8_4 gene 30520907 30522432 30520907 ID=Msa1322960;Name=Msa1322960
chr8_4 mRNA 30520907 30522432 30520907 ID=Msa1322960-mRNA-1;Parent=Msa1322960;Name=Msa1322960-mRNA-1;_AED=0.03;_eAED=0.03;_QI=49|1|1|1|1|1|2|229|156
chr8_4 exon 30520907 30521419 30520907 ID=Msa1322960-mRNA-1:exon:10145;Parent=Msa1322960-mRNA-1
chr8_4 exon 30522197 30522432 30522197 ID=Msa1322960-mRNA-1:exon:10144;Parent=Msa1322960-mRNA-1
chr8_4 five_prime_UTR 30522384 30522432 30522384 ID=Msa1322960-mRNA-1:five_prime_utr;Parent=Msa1322960-mRNA-1
chr8_4 CDS 30522197 30522383 30522197 ID=Msa1322960-mRNA-1:cds;Parent=Msa1322960-mRNA-1
chr8_4 CDS 30521136 30521419 30521136 ID=Msa1322960-mRNA-1:cds;Parent=Msa1322960-mRNA-1
chr8_4 three_prime_UTR 30520907 30521135 30520907 ID=Msa1322960-mRNA-1:three_prime_utr;Parent=Msa1322960-mRNA-1
Gene Sequence

>Msa1322960

ATGGTGCTCTCTGGTAAGCTCAGTACTGAAGTTGGAATCAAAACACCCGCCGACAAGTTCTACAATCTGTTCATAACAGAACTTCATGAAGTGCAAAACCTTTGTGAAAGAGTTCATCATACAAAACTTCATGAAGGTGAAGATTGGCATCACACTGATTCGGTTAAACACTGGACTTACGTCATAGATGGCAAGGTACATACATGTCACGAGAGAGTTGAAGAAGTTGATGAACTGAATAAAAAAAACACTTATAAGCTCTTTGGTGGAGATATTGATGAGCACTATAAGGTCTTTAAGCTCATCCTTGAAGTCATTGATAAGGGTGATGGCACTGCTGCTGCTAAATGGACAGTTGAATATGAAAAGATCAATGAGGATATTGACCCTCCAAATGGCTACATGGAATACTTTGGCAAAATCACTAGAGATGTTGATGCTCATCTTGCCAAAGCAAAGATAGCTCTATAA

Protein sequence

>Msa1322960

MVLSGKLSTEVGIKTPADKFYNLFITELHEVQNLCERVHHTKLHEGEDWHHTDSVKHWTYVIDGKVHTCHERVEEVDELNKKNTYKLFGGDIDEHYKVFKLILEVIDKGDGTAAAKWTVEYEKINEDIDPPNGYMEYFGKITRDVDAHLAKAKIAL*