AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0909260


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0909260 MtrunA17_Chr8g0355721 92.308 156 12 0 1 156 1 156 1.25e-105 298
Msa0909260 MtrunA17_Chr8g0355741 81.529 157 28 1 1 156 1 157 4.31e-93 266
Msa0909260 MtrunA17_Chr8g0355661 78.344 157 32 2 1 156 1 156 2.44e-88 254
Msa0909260 MtrunA17_Chr8g0355781 76.316 152 36 0 1 152 1 152 1.38e-86 250
Msa0909260 MtrunA17_Chr8g0355811 74.510 153 38 1 1 153 1 152 8.06e-84 243
Msa0909260 MtrunA17_Chr8g0355761 75.000 152 38 0 1 152 1 152 1.12e-83 242
Msa0909260 MtrunA17_Chr8g0355641 69.872 156 46 1 1 155 1 156 9.29e-81 235
Msa0909260 MtrunA17_Chr8g0355821 70.588 153 44 1 1 153 1 152 5.55e-80 233
Msa0909260 MtrunA17_Chr8g0355801 70.588 153 44 1 1 153 1 152 3.90e-78 228
Msa0909260 MtrunA17_Chr8g0355791 69.281 153 46 1 1 153 1 152 4.48e-76 223
Msa0909260 MtrunA17_Chr8g0355771 67.974 153 48 1 1 153 1 152 8.82e-75 220
Msa0909260 MtrunA17_Chr1g0160371 43.137 153 84 2 1 151 1 152 1.01e-40 134
Msa0909260 MtrunA17_Chr1g0160381 40.523 153 88 2 1 151 5 156 2.38e-40 133
Msa0909260 MtrunA17_Chr1g0160391 37.179 156 90 4 1 149 1 155 3.60e-29 104
Msa0909260 MtrunA17_Chr8g0339261 35.616 146 91 3 6 150 8 151 1.23e-28 103
Msa0909260 MtrunA17_Chr1g0160801 38.514 148 82 5 7 152 7 147 4.09e-26 96.7
Msa0909260 MtrunA17_Chr1g0160351 45.161 93 49 1 61 151 1 93 1.26e-22 85.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0909260 AT5G28010.1 36.242 149 92 3 3 149 15 162 7.27e-27 99.4
Msa0909260 AT5G28010.2 36.242 149 92 3 3 149 15 162 7.27e-27 99.4
Msa0909260 AT1G70890.1 37.584 149 90 3 3 149 7 154 2.79e-26 97.8
Msa0909260 AT1G70830.5 34.899 149 94 3 3 149 22 169 5.49e-24 92.0
Msa0909260 AT1G70830.3 34.899 149 94 3 3 149 22 169 1.02e-23 92.4
Msa0909260 AT1G70840.1 32.886 149 97 3 3 149 20 167 2.33e-23 90.5
Msa0909260 AT1G70830.2 34.899 149 94 3 3 149 22 169 3.61e-23 92.0
Msa0909260 AT5G28000.1 32.886 149 97 3 3 149 13 160 9.62e-23 88.6
Msa0909260 AT1G70830.1 34.899 149 94 3 3 149 22 169 9.92e-23 92.4
Msa0909260 AT1G70830.1 33.557 149 96 3 3 149 184 331 3.60e-21 88.2
Msa0909260 AT1G70870.1 35.948 153 81 4 1 151 1 138 8.70e-22 85.5
Msa0909260 AT1G70830.4 33.557 149 96 3 3 149 137 284 1.31e-21 88.6
Msa0909260 AT1G70830.4 30.435 92 63 1 59 149 31 122 6.47e-11 59.3
Msa0909260 AT1G70850.2 32.886 149 97 3 3 149 9 156 1.67e-21 87.4
Msa0909260 AT1G23120.1 30.769 143 94 3 7 149 7 144 4.42e-21 84.0
Msa0909260 AT1G70850.3 32.886 149 97 3 3 149 9 156 4.71e-21 87.4
Msa0909260 AT1G70850.3 33.094 139 90 3 13 149 175 312 9.05e-20 84.0
Msa0909260 AT1G70850.1 32.886 149 97 3 3 149 9 156 4.71e-21 87.4
Msa0909260 AT1G70850.1 33.094 139 90 3 13 149 175 312 9.05e-20 84.0
Msa0909260 AT4G23670.1 34.641 153 97 3 1 152 1 151 7.56e-21 83.6
Msa0909260 AT1G23130.1 30.405 148 101 2 3 149 10 156 1.21e-20 83.2
Msa0909260 AT1G23120.2 30.769 143 94 3 7 149 57 194 1.30e-20 84.0
Msa0909260 AT1G70880.1 30.872 149 100 3 3 149 8 155 5.31e-20 81.6
Msa0909260 AT2G01520.1 32.026 153 101 3 1 152 1 151 7.42e-19 78.2
Msa0909260 AT4G23680.1 32.026 153 101 3 1 152 1 151 2.92e-18 76.6
Msa0909260 AT1G14930.1 32.298 161 92 5 1 153 1 152 1.15e-17 75.5
Msa0909260 AT2G01530.1 32.026 153 101 3 1 152 1 151 2.27e-17 74.3
Msa0909260 AT4G14060.1 32.680 153 100 3 1 152 1 151 2.86e-17 74.3
Msa0909260 AT1G35260.1 28.966 145 99 3 7 149 6 148 3.74e-17 73.9
Msa0909260 AT1G24020.1 32.692 156 103 2 1 155 1 155 5.09e-16 71.2
Msa0909260 AT1G24020.2 32.692 156 103 2 1 155 1 155 5.09e-16 71.2
Msa0909260 AT1G30990.1 32.000 150 98 4 1 149 1 147 2.18e-15 69.3
Msa0909260 AT1G14940.1 30.000 150 102 3 1 149 1 148 3.75e-14 66.2
Msa0909260 AT3G26460.1 32.051 156 98 5 1 152 1 152 8.39e-14 65.1
Msa0909260 AT1G14950.1 28.947 152 105 3 1 151 1 150 1.37e-13 64.7
Msa0909260 AT1G35310.1 25.362 138 100 3 13 149 12 147 2.00e-12 61.6
Msa0909260 AT1G14960.1 28.571 154 107 3 1 153 1 152 8.49e-12 60.1
Msa0909260 AT3G26450.1 27.273 154 108 4 1 152 1 152 2.96e-11 58.5

Find 40 sgRNAs with CRISPR-Local

Find 458 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATGGCACTGCTGCTGCTAAA+TGG 0.310932 6_2:-10420375 Msa0909260:CDS
CTTCCCTTTCTTCTAAGAAA+TGG 0.349077 6_2:-10427595 Msa0909260:exon
TATGTGATGAAATCAATAAA+TGG 0.369456 6_2:-10420045 Msa0909260:three_prime_UTR
CACCCTTATCAATGACTTCA+AGG 0.380806 6_2:+10420398 Msa0909270:CDS
TTATAGAGCTATCTTTGCTT+TGG 0.392094 6_2:+10420255 None:intergenic
AATTAGTGTGATATTTGTAA+TGG 0.409729 6_2:-10420158 Msa0909260:three_prime_UTR
ATATTGTTGCATATGCATAT+TGG 0.412178 6_2:-10420134 Msa0909260:three_prime_UTR
TAGTAATGGGTTATTGCATT+GGG 0.416848 6_2:-10420208 Msa0909260:three_prime_UTR
TGTAACAAATAACTAGTAAT+GGG 0.422186 6_2:-10420221 Msa0909260:three_prime_UTR
AGCACCATTTCTTAGAAGAA+AGG 0.435379 6_2:+10427591 None:intergenic
AAACACTGGACTTACGTCAT+AGG 0.436108 6_2:-10427411 Msa0909260:intron
TTCTAAGAAATGGTGCTCTC+TGG 0.436928 6_2:-10427585 Msa0909260:exon
CATCCTTGAAGTCATTGATA+AGG 0.445764 6_2:-10420401 Msa0909260:CDS
AAGTATTCCATGTAGCCATT+TGG 0.448595 6_2:+10420313 Msa0909270:CDS
CTTCTATGTGATGTTTGTAA+TGG 0.450639 6_2:-10420111 Msa0909260:three_prime_UTR
CTAGTAATGGGTTATTGCAT+TGG 0.451009 6_2:-10420209 Msa0909260:three_prime_UTR
AACACTTATAAGCTCTTTGG+TGG 0.457999 6_2:-10420457 Msa0909260:CDS
GCACCATTTCTTAGAAGAAA+GGG 0.460369 6_2:+10427592 None:intergenic
ATGTAACAAATAACTAGTAA+TGG 0.468583 6_2:-10420222 Msa0909260:three_prime_UTR
AACTTCATGAAGGTGAAGAT+TGG 0.478377 6_2:-10427452 Msa0909260:CDS
GGTAAGCTCAGTACTGAAGT+TGG 0.490802 6_2:-10427564 Msa0909260:CDS
AATGGGTTATTGCATTGGGT+TGG 0.493837 6_2:-10420204 Msa0909260:three_prime_UTR
ATCCTTGAAGTCATTGATAA+GGG 0.494628 6_2:-10420400 Msa0909260:CDS
AGATATTGATGAGCACTATA+AGG 0.500590 6_2:-10420434 Msa0909260:CDS
GAACAGATTGTAGAACTTGT+CGG 0.501167 6_2:+10427527 None:intergenic
TATTCCATGTAGCCATTTGG+AGG 0.517921 6_2:+10420316 Msa0909270:CDS
AGATTGGCATCACACTGATT+CGG 0.519723 6_2:-10427436 Msa0909260:CDS
AATGGCTACATGGAATACTT+TGG 0.525683 6_2:-10420310 Msa0909260:CDS
TGACCCTCCAAATGGCTACA+TGG 0.526835 6_2:-10420320 Msa0909260:CDS
GAGGATATTGACCCTCCAAA+TGG 0.540200 6_2:-10420328 Msa0909260:CDS
TATGATGAACTCTTTCACAA+AGG 0.552779 6_2:+10427478 None:intergenic
ACACTTTCATCAACTCACAT+AGG 0.573859 6_2:-10427636 None:intergenic
GAAGTCATTGATAAGGGTGA+TGG 0.579318 6_2:-10420394 Msa0909260:CDS
ATCATAATTCACAGATGGCA+AGG 0.582682 6_2:-10420530 Msa0909260:intron
CATCATACAAAACTTCATGA+AGG 0.606616 6_2:-10427462 Msa0909260:CDS
ACACTGATTCGGTTAAACAC+TGG 0.614381 6_2:-10427425 Msa0909260:CDS
ATTCCATGTAGCCATTTGGA+GGG 0.625101 6_2:+10420317 Msa0909270:CDS
AGATTGTAGAACTTGTCGGC+GGG 0.646397 6_2:+10427531 None:intergenic
TGAATATGAAAAGATCAATG+AGG 0.667026 6_2:-10420347 Msa0909260:CDS
CAGATTGTAGAACTTGTCGG+CGG 0.688816 6_2:+10427530 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTTATTAATAAAAAATT+TGG + chr6_2:10426965-10426984 None:intergenic 0.0%
!! AGGAATAATAAATATTTATA+AGG + chr6_2:10420871-10420890 Msa0909270:CDS 10.0%
!! TTTATTTACAAAGATTTATT+TGG - chr6_2:10421876-10421895 Msa0909260:intron 10.0%
!! TCTAATTTATAAAAAAATAG+TGG - chr6_2:10425414-10425433 Msa0909260:intron 10.0%
!! AATTAAATAAGATGATGATT+TGG + chr6_2:10420305-10420324 Msa0909270:CDS 15.0%
!! AAAAAAATCAACAATCATTT+GGG - chr6_2:10420629-10420648 Msa0909260:intron 15.0%
!! AATAGTTTATTTGTTCAAAA+AGG - chr6_2:10420934-10420953 Msa0909260:intron 15.0%
!! AATTGTTACAAAGATTTATT+TGG - chr6_2:10421778-10421797 Msa0909260:intron 15.0%
!! AATATTACACATATATTTGT+CGG + chr6_2:10421949-10421968 None:intergenic 15.0%
!!! ATAATTTTTCTTTCTTTCAA+AGG - chr6_2:10422247-10422266 Msa0909260:intron 15.0%
!!! TAATTTTTCTTTCTTTCAAA+GGG - chr6_2:10422248-10422267 Msa0909260:intron 15.0%
!! AAATTCAACAATTAACAAAA+AGG + chr6_2:10422300-10422319 None:intergenic 15.0%
!! ATTATATATCATTATGATCA+TGG + chr6_2:10422559-10422578 None:intergenic 15.0%
!! AAATAGATGAAACTAAAAAT+GGG + chr6_2:10423068-10423087 None:intergenic 15.0%
!! TTCATCTATTTGTATATAAA+TGG - chr6_2:10423077-10423096 Msa0909260:intron 15.0%
!! AAGTTGAACAATTTATATAA+TGG + chr6_2:10423347-10423366 None:intergenic 15.0%
!!! AAATAATACATTATTTTGGA+AGG - chr6_2:10423513-10423532 Msa0909260:intron 15.0%
!!! TGTAATGTTTTTTTTTTTGA+AGG - chr6_2:10423682-10423701 Msa0909260:intron 15.0%
!!! GTAATGTTTTTTTTTTTGAA+GGG - chr6_2:10423683-10423702 Msa0909260:intron 15.0%
!!! TAAATAACATGTTTTACAAT+CGG + chr6_2:10424709-10424728 None:intergenic 15.0%
!!! ATTGTAAAACATGTTATTTA+TGG - chr6_2:10424709-10424728 Msa0909260:intron 15.0%
!! TCTAATTTATGATAAAATAG+TGG - chr6_2:10424778-10424797 Msa0909260:intron 15.0%
!! AAACAAGATTATTTATACAT+GGG + chr6_2:10425072-10425091 None:intergenic 15.0%
!! AAAACAAGATTATTTATACA+TGG + chr6_2:10425073-10425092 None:intergenic 15.0%
!! CTTAATTATATTGTTTATTG+AGG + chr6_2:10425603-10425622 None:intergenic 15.0%
!! AAACAATATAATTAAGCATA+TGG - chr6_2:10425607-10425626 Msa0909260:intron 15.0%
!! TATATGCTTATATATGTTAT+TGG + chr6_2:10425634-10425653 None:intergenic 15.0%
!! ACAAATAAAAATGAAAACTT+TGG + chr6_2:10427088-10427107 None:intergenic 15.0%
!!! TTGTTGATTTTTTTGTCATA+AGG + chr6_2:10420623-10420642 Msa0909270:intron 20.0%
!! CAAAAAAATCAACAATCATT+TGG - chr6_2:10420628-10420647 Msa0909260:intron 20.0%
!!! TTTTGAAATACTACTGAATA+TGG + chr6_2:10422006-10422025 None:intergenic 20.0%
!! AGAGTTAAAAATGAAAGAAT+GGG + chr6_2:10422133-10422152 None:intergenic 20.0%
!! TAGAGTTAAAAATGAAAGAA+TGG + chr6_2:10422134-10422153 None:intergenic 20.0%
!! GAAAGAAAAATTATTATGCA+AGG + chr6_2:10422241-10422260 None:intergenic 20.0%
!!! TTTATTTGTTAAAATCGTCA+AGG - chr6_2:10422322-10422341 Msa0909260:intron 20.0%
!! GTAGTTGTTATATCATTATA+TGG - chr6_2:10422525-10422544 Msa0909260:intron 20.0%
!! CAAATAGATGAAACTAAAAA+TGG + chr6_2:10423069-10423088 None:intergenic 20.0%
!!! TGAAAAAGCATTTTTAATGA+AGG - chr6_2:10423124-10423143 Msa0909260:intron 20.0%
!! CAAAACTTATACTATAGTAT+TGG + chr6_2:10423190-10423209 None:intergenic 20.0%
!!! GCAGAAATAATACATTATTT+TGG - chr6_2:10423509-10423528 Msa0909260:intron 20.0%
!!! TAATTTTGTGCATACAAATA+GGG + chr6_2:10423765-10423784 None:intergenic 20.0%
!!! TTAATTTTGTGCATACAAAT+AGG + chr6_2:10423766-10423785 None:intergenic 20.0%
!!! TTTTGTTGAAAACTAATAGT+AGG - chr6_2:10423788-10423807 Msa0909260:intron 20.0%
!! GTTACACATTTGATAAATAT+TGG - chr6_2:10423813-10423832 Msa0909260:intron 20.0%
!! TGATATAAGTGAAAAGAATA+TGG + chr6_2:10424013-10424032 None:intergenic 20.0%
!!! AATTGGTAATGAAAAAAATG+TGG - chr6_2:10424059-10424078 Msa0909260:intron 20.0%
!!! ACTTAACCAATTTTTAACAA+AGG + chr6_2:10424090-10424109 None:intergenic 20.0%
!! TGAATGAAAGGAATATATTA+TGG + chr6_2:10424166-10424185 None:intergenic 20.0%
!! ATATAAAGAAAGAGAGAAAT+TGG - chr6_2:10424200-10424219 Msa0909260:intron 20.0%
!! ATATAAACTAGCCAAATATA+TGG - chr6_2:10424492-10424511 Msa0909260:intron 20.0%
!! ATATAAACTAGCCAAATATA+TGG - chr6_2:10424492-10424511 Msa0909260:intron 20.0%
!!! TCTAATTTCTGAAAAAATAG+TGG + chr6_2:10424990-10425009 None:intergenic 20.0%
!! ATATAAACTAGCCAAATATA+TGG + chr6_2:10424492-10424511 None:intergenic 20.0%
!!! GATGTAAATAATTTCGTTTT+AGG - chr6_2:10424861-10424880 Msa0909260:intron 20.0%
!!! TCTAATTTCTGAAAAAATAG+TGG - chr6_2:10424990-10425009 Msa0909260:intron 20.0%
!!! TCTAATTTCTGAAAAAATAG+TGG - chr6_2:10424990-10425009 Msa0909260:intron 20.0%
!! ATATAAACTAGCCAAATATA+TGG + chr6_2:10424492-10424511 None:intergenic 20.0%
!! ATTGTAAAACAGGTTATTTA+TGG + chr6_2:10425361-10425380 None:intergenic 20.0%
!!! TAAATAACCTGTTTTACAAT+CGG - chr6_2:10425361-10425380 Msa0909260:intron 20.0%
!! ATATAAACTAGCCAAATATA+TGG + chr6_2:10424492-10424511 None:intergenic 20.0%
!! AAACGAAATTATTTACATCT+GGG + chr6_2:10424860-10424879 None:intergenic 20.0%
!! AAAACGAAATTATTTACATC+TGG + chr6_2:10424861-10424880 None:intergenic 20.0%
!!! GATGTAAATAATTTCGTTTT+AGG - chr6_2:10424861-10424880 Msa0909260:intron 20.0%
!! AGTTTATTTACTTTGGATTT+GGG + chr6_2:10425719-10425738 None:intergenic 20.0%
!! TAGTTTATTTACTTTGGATT+TGG + chr6_2:10425720-10425739 None:intergenic 20.0%
!! AAATCCAAAGTAAATAAACT+AGG - chr6_2:10425719-10425738 Msa0909260:intron 20.0%
!! AATTCCTAGTTTATTTACTT+TGG + chr6_2:10425726-10425745 None:intergenic 20.0%
!! AAAATTGTTATGAAAACCAA+AGG + chr6_2:10426413-10426432 None:intergenic 20.0%
!! AAGGATGTATTAATAAGATT+GGG + chr6_2:10426436-10426455 None:intergenic 20.0%
!!! ACTCTTTTTTTTTAATGACA+TGG - chr6_2:10426931-10426950 Msa0909260:intron 20.0%
!!! TTTTTTTAATGACATGGATT+TGG - chr6_2:10426937-10426956 Msa0909260:intron 20.0%
!! ATTAATAAAAAATTGCCAAC+AGG - chr6_2:10426971-10426990 Msa0909260:intron 20.0%
!!! ATTTTTTAACGAGTAATGAT+AGG + chr6_2:10427034-10427053 None:intergenic 20.0%
!! TATCATTACTCGTTAAAAAA+TGG - chr6_2:10427033-10427052 Msa0909260:intron 20.0%
!! ATCATTACTCGTTAAAAAAT+GGG - chr6_2:10427034-10427053 Msa0909260:intron 20.0%
!! ATGTAACAAATAACTAGTAA+TGG - chr6_2:10427432-10427451 Msa0909260:CDS 20.0%
!! TGTAACAAATAACTAGTAAT+GGG - chr6_2:10427433-10427452 Msa0909260:CDS 20.0%
!! AATTAGTGTGATATTTGTAA+TGG - chr6_2:10427496-10427515 Msa0909260:CDS 20.0%
!! TATGTGATGAAATCAATAAA+TGG - chr6_2:10427609-10427628 Msa0909260:five_prime_UTR 20.0%
! ATAAGAAAGAAACAAGTACA+TGG - chr6_2:10420410-10420429 Msa0909260:CDS 25.0%
! TTGGGAAGAAAAAAAAATCA+GGG + chr6_2:10420493-10420512 Msa0909270:intron 25.0%
! TTTGGGAAGAAAAAAAAATC+AGG + chr6_2:10420494-10420513 Msa0909270:intron 25.0%
!! CTATCTTGAAAATGGTTTTT+GGG + chr6_2:10420511-10420530 Msa0909270:intron 25.0%
!! TCTATCTTGAAAATGGTTTT+TGG + chr6_2:10420512-10420531 Msa0909270:intron 25.0%
! AGATTATGAGATCTCAAAAA+TGG - chr6_2:10420725-10420744 Msa0909260:intron 25.0%
! AACCACAGTTATTCTTTATA+TGG + chr6_2:10420846-10420865 Msa0909270:CDS 25.0%
!! AAATAATTTAATTTCCACCC+AGG + chr6_2:10421027-10421046 Msa0909270:CDS 25.0%
! AACAGCAAAGATTCAAAATT+AGG + chr6_2:10421390-10421409 Msa0909270:CDS 25.0%
!!! GCAAAACATGATTTAAGTTT+TGG - chr6_2:10421815-10421834 Msa0909260:intron 25.0%
! AGAAAAATTATTATGCAAGG+AGG + chr6_2:10422238-10422257 None:intergenic 25.0%
! CAAAAAGGTTAAAAAACCAA+AGG + chr6_2:10422285-10422304 None:intergenic 25.0%
!! ATTAACAATGTTGGTGAAAA+GGG + chr6_2:10422398-10422417 None:intergenic 25.0%
! TGATTGATAAGGATATTGAT+AGG - chr6_2:10422461-10422480 Msa0909260:intron 25.0%
!!! TTGTTCTTTTTAGAGTTTCT+TGG - chr6_2:10422675-10422694 Msa0909260:intron 25.0%
! TTGTGTGCTCATTATTTATT+TGG - chr6_2:10422739-10422758 Msa0909260:intron 25.0%
!! TCATTATTTATTTGGAGTTG+TGG - chr6_2:10422747-10422766 Msa0909260:intron 25.0%
!! GGTAATGTTATTCTTTGAAA+TGG - chr6_2:10422930-10422949 Msa0909260:intron 25.0%
! GCTTTATATCAAAACATTCA+TGG - chr6_2:10422988-10423007 Msa0909260:intron 25.0%
! ATTGAATTTGTGTTTGGTAT+GGG - chr6_2:10423013-10423032 Msa0909260:intron 25.0%
!!! AAAAGCATTTTTAATGAAGG+TGG - chr6_2:10423127-10423146 Msa0909260:intron 25.0%
! AATTTGATGTGGAATCAAAT+TGG - chr6_2:10423455-10423474 Msa0909260:intron 25.0%
!!! ATACATTATTTTGGAAGGAT+TGG - chr6_2:10423518-10423537 Msa0909260:intron 25.0%
! AACATTACAAGACACATAAA+GGG + chr6_2:10423671-10423690 None:intergenic 25.0%
! AAACATTACAAGACACATAA+AGG + chr6_2:10423672-10423691 None:intergenic 25.0%
!! TGAATTATTTTCTGTTTCAC+AGG + chr6_2:10423945-10423964 None:intergenic 25.0%
!! TTCTTTTCACTTATATCACA+TGG - chr6_2:10424015-10424034 Msa0909260:intron 25.0%
! ATAGTTAGATAGTGACAAAT+TGG - chr6_2:10424042-10424061 Msa0909260:intron 25.0%
! GTTACACCTTTGTTAAAAAT+TGG - chr6_2:10424081-10424100 Msa0909260:intron 25.0%
! ATCTACATGATTTGAATGAA+AGG + chr6_2:10424178-10424197 None:intergenic 25.0%
! TGTATATCTCAATGACAATT+TGG + chr6_2:10424302-10424321 None:intergenic 25.0%
!! TTAGACTCTAAGAAACATTA+TGG - chr6_2:10424396-10424415 Msa0909260:intron 25.0%
! AACAGTACAAGATACATAAA+AGG - chr6_2:10424442-10424461 Msa0909260:intron 25.0%
! ACAGTACAAGATACATAAAA+GGG - chr6_2:10424443-10424462 Msa0909260:intron 25.0%
! TTCAAACGATACCATATATT+TGG + chr6_2:10424506-10424525 None:intergenic 25.0%
! AATATATGGTATCGTTTGAA+AGG - chr6_2:10424506-10424525 Msa0909260:intron 25.0%
!! GATGTAAATAACTTCGTTTT+AGG + chr6_2:10424573-10424592 None:intergenic 25.0%
! AAAACGAAGTTATTTACATC+TGG - chr6_2:10424573-10424592 Msa0909260:intron 25.0%
! AAACGAAGTTATTTACATCT+GGG - chr6_2:10424574-10424593 Msa0909260:intron 25.0%
! GTCACGCATATTAAAAAATA+TGG - chr6_2:10425224-10425243 Msa0909260:intron 25.0%
! AAAACGATATTATTTACACC+TGG + chr6_2:10425285-10425304 None:intergenic 25.0%
!! GGTGTAAATAATATCGTTTT+AGG - chr6_2:10425285-10425304 Msa0909260:intron 25.0%
! TAAAACAGGTTATTTATGGT+TGG + chr6_2:10425357-10425376 None:intergenic 25.0%
! GTCACATATTTGTAAAAATG+TGG - chr6_2:10425436-10425455 Msa0909260:intron 25.0%
! ATTTGATTCAATCTTGATGA+TGG + chr6_2:10425683-10425702 None:intergenic 25.0%
! GATTGAATCAAATAGACAAT+AGG - chr6_2:10425690-10425709 Msa0909260:intron 25.0%
! ACAAATTACTGTAATCTATG+TGG + chr6_2:10425990-10426009 None:intergenic 25.0%
! AAAGATAATGTGATTGTGAA+GGG + chr6_2:10426270-10426289 None:intergenic 25.0%
! CAAGGATGTATTAATAAGAT+TGG + chr6_2:10426437-10426456 None:intergenic 25.0%
!!! TACTACTTCTGTTTTGAAAT+TGG + chr6_2:10426471-10426490 None:intergenic 25.0%
! GAAAAATGAAGACAAAAAAG+AGG + chr6_2:10426599-10426618 None:intergenic 25.0%
!!! TTCTCATCAGATTTTTTGTT+TGG - chr6_2:10426619-10426638 Msa0909260:intron 25.0%
! ATAGAAGAAGAATGAGAAAA+GGG - chr6_2:10426832-10426851 Msa0909260:intron 25.0%
! AAAAACACTTATAAGCTCTT+TGG - chr6_2:10427194-10427213 Msa0909260:intron 25.0%
! TGAATATGAAAAGATCAATG+AGG - chr6_2:10427307-10427326 Msa0909260:intron 25.0%
! ATATTGTTGCATATGCATAT+TGG - chr6_2:10427520-10427539 Msa0909260:CDS 25.0%
TATGATGAACTCTTTCACAA+AGG + chr6_2:10420179-10420198 None:intergenic 30.0%
CATCATACAAAACTTCATGA+AGG - chr6_2:10420192-10420211 Msa0909260:three_prime_UTR 30.0%
TACATTCTACAAACCAAACA+TGG - chr6_2:10420463-10420482 Msa0909260:CDS 30.0%
TGGGAAGAAAAAAAAATCAG+GGG + chr6_2:10420492-10420511 Msa0909270:intron 30.0%
! TGAAGCATCTATCTTGAAAA+TGG + chr6_2:10420519-10420538 Msa0909270:intron 30.0%
AACATAGTCAAAAGTAGAAG+AGG + chr6_2:10420554-10420573 Msa0909270:intron 30.0%
!! CTACTTTTGACTATGTTGAA+CGG - chr6_2:10420557-10420576 Msa0909260:intron 30.0%
!! TACTTTTGACTATGTTGAAC+GGG - chr6_2:10420558-10420577 Msa0909260:intron 30.0%
! TTTTTGTCATAAGGTTCTCT+GGG + chr6_2:10420614-10420633 Msa0909270:intron 30.0%
!!! TTTTTTGTCATAAGGTTCTC+TGG + chr6_2:10420615-10420634 Msa0909270:intron 30.0%
AGCCATATAAAGAATAACTG+TGG - chr6_2:10420841-10420860 Msa0909260:intron 30.0%
AAAAACACTCTTAAACCAGA+TGG + chr6_2:10421295-10421314 Msa0909270:intron 30.0%
!!! TAAGAGTGTTTTTCTGTTTG+CGG - chr6_2:10421302-10421321 Msa0909260:intron 30.0%
TACCTTTCAAACAAGGTTTA+GGG + chr6_2:10421629-10421648 Msa0909270:intron 30.0%
TTACCTTTCAAACAAGGTTT+AGG + chr6_2:10421630-10421649 Msa0909270:intron 30.0%
AGAGAATTACCTTTCAAACA+AGG + chr6_2:10421636-10421655 Msa0909270:intron 30.0%
AAATGTAGTAATTACCTCCA+TGG - chr6_2:10421699-10421718 Msa0909260:intron 30.0%
! GATTAACAATGTTGGTGAAA+AGG + chr6_2:10422399-10422418 None:intergenic 30.0%
GAAGTCAAGATTAACAATGT+TGG + chr6_2:10422407-10422426 None:intergenic 30.0%
ATTCTGGATGATGATTGATA+AGG - chr6_2:10422450-10422469 Msa0909260:intron 30.0%
!!! TTTTAGAGTTTCTTGGATGA+TGG - chr6_2:10422682-10422701 Msa0909260:intron 30.0%
! TATTTATTTGGAGTTGTGGA+AGG - chr6_2:10422751-10422770 Msa0909260:intron 30.0%
CATTATAGTATAGCAGATAC+GGG + chr6_2:10422839-10422858 None:intergenic 30.0%
CCATTATAGTATAGCAGATA+CGG + chr6_2:10422840-10422859 None:intergenic 30.0%
! TTAAGGTGTGTTGATCTTAT+AGG - chr6_2:10422886-10422905 Msa0909260:intron 30.0%
TTGAAATGGTGAAGTGTATA+AGG - chr6_2:10422944-10422963 Msa0909260:intron 30.0%
TGAAATGGTGAAGTGTATAA+GGG - chr6_2:10422945-10422964 Msa0909260:intron 30.0%
ATGGTCATTGAATTTGTGTT+TGG - chr6_2:10423007-10423026 Msa0909260:intron 30.0%
CATTGAATTTGTGTTTGGTA+TGG - chr6_2:10423012-10423031 Msa0909260:intron 30.0%
GTTCAACTTATCAGTGAAAT+AGG - chr6_2:10423358-10423377 Msa0909260:intron 30.0%
! TGATTTGTGTTTGATTGGAA+GGG - chr6_2:10423432-10423451 Msa0909260:intron 30.0%
! GATTTTCACATTTACAGTGT+CGG - chr6_2:10423569-10423588 Msa0909260:intron 30.0%
! ATTTTCACATTTACAGTGTC+GGG - chr6_2:10423570-10423589 Msa0909260:intron 30.0%
ACATTACAAGACACATAAAG+GGG + chr6_2:10423670-10423689 None:intergenic 30.0%
TTAGACTCCAAGAAACATTA+AGG - chr6_2:10423720-10423739 Msa0909260:intron 30.0%
TAGACTCCAAGAAACATTAA+GGG - chr6_2:10423721-10423740 Msa0909260:intron 30.0%
TAGGGAATCGTAAAACTTAT+GGG + chr6_2:10423747-10423766 None:intergenic 30.0%
ATAGGGAATCGTAAAACTTA+TGG + chr6_2:10423748-10423767 None:intergenic 30.0%
TACAAATACTAACCAAATCG+AGG + chr6_2:10423849-10423868 None:intergenic 30.0%
GCAATATCTTGTAAGTTTAG+CGG + chr6_2:10423876-10423895 None:intergenic 30.0%
ATAAGTGAAAAGAATATGGC+AGG + chr6_2:10424009-10424028 None:intergenic 30.0%
GGTTAAGTAGAACACATATT+TGG - chr6_2:10424102-10424121 Msa0909260:intron 30.0%
ATGTGCACATTGTAACAATT+TGG + chr6_2:10424249-10424268 None:intergenic 30.0%
ATACAAAGTTAGCACTATTC+AGG - chr6_2:10424317-10424336 Msa0909260:intron 30.0%
ATGTATCTTGTACTGTTATG+AGG + chr6_2:10424439-10424458 None:intergenic 30.0%
CAGTACAAGATACATAAAAG+GGG - chr6_2:10424444-10424463 Msa0909260:intron 30.0%
GTCACGTATTTGTAAAAATG+TGG + chr6_2:10424800-10424819 None:intergenic 30.0%
ATTAGAACTTATCCGTCTTT+AGG - chr6_2:10424670-10424689 Msa0909260:intron 30.0%
GTCACGTATTTGTAAAAATG+TGG - chr6_2:10424800-10424819 Msa0909260:intron 30.0%
GGTCACACAAAACATATATT+TGG - chr6_2:10425033-10425052 Msa0909260:intron 30.0%
!! TTGGCTAGTTTATATTTACC+AGG - chr6_2:10425264-10425283 Msa0909260:intron 30.0%
ATTAGAATTTGTCTGTCCTT+AGG + chr6_2:10425400-10425419 None:intergenic 30.0%
ATTTATCACAGAAGCTTAAG+AGG + chr6_2:10426218-10426237 None:intergenic 30.0%
GAAAGATAATGTGATTGTGA+AGG + chr6_2:10426271-10426290 None:intergenic 30.0%
AATATGATTCTGATGTGTGT+AGG + chr6_2:10426321-10426340 None:intergenic 30.0%
GAAAAATAAAAACCCACCTT+TGG - chr6_2:10426394-10426413 Msa0909260:intron 30.0%
TTGTTATGAAAACCAAAGGT+GGG + chr6_2:10426409-10426428 None:intergenic 30.0%
ATTGTTATGAAAACCAAAGG+TGG + chr6_2:10426410-10426429 None:intergenic 30.0%
!! TTCTTGTTGTTATCCTTCTT+GGG - chr6_2:10426652-10426671 Msa0909260:intron 30.0%
AAAGAAGAAAACAACAACAG+TGG + chr6_2:10426742-10426761 None:intergenic 30.0%
AACAACAACATCAACAACAA+TGG + chr6_2:10426775-10426794 None:intergenic 30.0%
! TTTTCTTGAAGCCATAATGA+AGG - chr6_2:10426793-10426812 Msa0909260:intron 30.0%
TCAATCTTCATCCTTCATTA+TGG + chr6_2:10426807-10426826 None:intergenic 30.0%
GATAGAAGAAGAATGAGAAA+AGG - chr6_2:10426831-10426850 Msa0909260:intron 30.0%
ATAAAAAATTGCCAACAGGA+AGG - chr6_2:10426975-10426994 Msa0909260:intron 30.0%
TAAAAAATTGCCAACAGGAA+GGG - chr6_2:10426976-10426995 Msa0909260:intron 30.0%
AGATATTGATGAGCACTATA+AGG - chr6_2:10427220-10427239 Msa0909260:intron 30.0%
ATCCTTGAAGTCATTGATAA+GGG - chr6_2:10427254-10427273 Msa0909260:intron 30.0%
TTATAGAGCTATCTTTGCTT+TGG + chr6_2:10427402-10427421 None:intergenic 30.0%
!! TAGTAATGGGTTATTGCATT+GGG - chr6_2:10427446-10427465 Msa0909260:CDS 30.0%
CTTCTATGTGATGTTTGTAA+TGG - chr6_2:10427543-10427562 Msa0909260:CDS 30.0%
! CTTCCCTTTCTTCTAAGAAA+TGG - chr6_2:10420059-10420078 Msa0909260:three_prime_UTR 35.0%
GCACCATTTCTTAGAAGAAA+GGG + chr6_2:10420065-10420084 None:intergenic 35.0%
AGCACCATTTCTTAGAAGAA+AGG + chr6_2:10420066-10420085 None:intergenic 35.0%
GAACAGATTGTAGAACTTGT+CGG + chr6_2:10420130-10420149 None:intergenic 35.0%
AACTTCATGAAGGTGAAGAT+TGG - chr6_2:10420202-10420221 Msa0909260:three_prime_UTR 35.0%
!! TGATGATTTGGTTATCGATC+AGG + chr6_2:10420293-10420312 Msa0909270:CDS 35.0%
! TTTTGTCATAAGGTTCTCTG+GGG + chr6_2:10420613-10420632 Msa0909270:intron 35.0%
TATGAACAGTAACCCGTAAT+GGG - chr6_2:10421135-10421154 Msa0909260:intron 35.0%
ACAGCAAAGAGGATAATCAA+GGG + chr6_2:10421219-10421238 Msa0909270:CDS 35.0%
AACAGCAAAGAGGATAATCA+AGG + chr6_2:10421220-10421239 Msa0909270:CDS 35.0%
! ATTCAAGATTGAGCTGCTTT+GGG - chr6_2:10421341-10421360 Msa0909260:intron 35.0%
!! TTGCTCTCAGACTGTTATTT+TGG - chr6_2:10421445-10421464 Msa0909260:intron 35.0%
ACGAAACATCAACTTTGTTG+AGG + chr6_2:10421596-10421615 Msa0909270:intron 35.0%
GATGTTTATCAGACTGTTCT+TGG - chr6_2:10421675-10421694 Msa0909260:intron 35.0%
!! GTCAACTCGACTTTTAATTC+TGG - chr6_2:10422434-10422453 Msa0909260:intron 35.0%
TGTGGAAGGAGCTAATATAA+AGG - chr6_2:10422765-10422784 Msa0909260:intron 35.0%
GTGGAAGGAGCTAATATAAA+GGG - chr6_2:10422766-10422785 Msa0909260:intron 35.0%
CCGTATCTGCTATACTATAA+TGG - chr6_2:10422837-10422856 Msa0909260:intron 35.0%
AATTTGTGTTTGGTATGGGT+AGG - chr6_2:10423017-10423036 Msa0909260:intron 35.0%
! CTATAGTATTGGAAAGCTCA+GGG + chr6_2:10423179-10423198 None:intergenic 35.0%
! ACTATAGTATTGGAAAGCTC+AGG + chr6_2:10423180-10423199 None:intergenic 35.0%
GCTAATACTTTATCCATTGC+AGG - chr6_2:10423209-10423228 Msa0909260:intron 35.0%
ATACCTATCAGTCAAACTCA+TGG + chr6_2:10423298-10423317 None:intergenic 35.0%
CAACTTATCAGTGAAATAGG+TGG - chr6_2:10423361-10423380 Msa0909260:intron 35.0%
! TGGAGTGATTTGTGTTTGAT+TGG - chr6_2:10423427-10423446 Msa0909260:intron 35.0%
! GTGATTTGTGTTTGATTGGA+AGG - chr6_2:10423431-10423450 Msa0909260:intron 35.0%
GGAATCAAATTGGATTTCAC+TGG - chr6_2:10423465-10423484 Msa0909260:intron 35.0%
!!! CATTATTTTGGAAGGATTGG+TGG - chr6_2:10423521-10423540 Msa0909260:intron 35.0%
ACATGAACTTGTGACAATCA+TGG + chr6_2:10423607-10423626 None:intergenic 35.0%
ACTGATGTTAATAGAGTGAG+AGG + chr6_2:10423900-10423919 None:intergenic 35.0%
! ATTTTCTGTTTCACAGGCTT+TGG + chr6_2:10423939-10423958 None:intergenic 35.0%
CTGTTATGAGGTGATATCAA+AGG + chr6_2:10424427-10424446 None:intergenic 35.0%
GGTCATACAGACCATATATT+TGG + chr6_2:10424821-10424840 None:intergenic 35.0%
ATTAGAACTTGTCCGTCTTT+AGG + chr6_2:10424764-10424783 None:intergenic 35.0%
GGTCATACAGACCATATATT+TGG - chr6_2:10424821-10424840 Msa0909260:intron 35.0%
GATCAAATGAGATTATGCGT+TGG + chr6_2:10424542-10424561 None:intergenic 35.0%
AAGTTTATCACGCCTAAAGA+CGG - chr6_2:10424961-10424980 Msa0909260:intron 35.0%
ATTAGAACTTGTCCGTCTTT+AGG + chr6_2:10424764-10424783 None:intergenic 35.0%
ATTAGAACTTGTCCGTCTTT+AGG + chr6_2:10424764-10424783 None:intergenic 35.0%
GGTCACACATACCATATATT+TGG - chr6_2:10425245-10425264 Msa0909260:intron 35.0%
! AAACTTGCCGATTGTAAAAC+AGG + chr6_2:10425371-10425390 None:intergenic 35.0%
GGTCATACAGACCATATATT+TGG - chr6_2:10424821-10424840 Msa0909260:intron 35.0%
TTATTGAGGATCATGTGTCT+TGG + chr6_2:10425589-10425608 None:intergenic 35.0%
TACTGTAATCTATGTGGATC+AGG + chr6_2:10425984-10426003 None:intergenic 35.0%
CTCCATTATCTCAAAAAGAG+TGG - chr6_2:10426031-10426050 Msa0909260:intron 35.0%
!!! AGCCACTCTTTTTGAGATAA+TGG + chr6_2:10426036-10426055 None:intergenic 35.0%
AGTTCAACCAAAGAAAGACA+AGG + chr6_2:10426184-10426203 None:intergenic 35.0%
AAATTGGTACTACACTGTCA+AGG + chr6_2:10426455-10426474 None:intergenic 35.0%
CAAGAAGGATAACAACAAGA+AGG + chr6_2:10426653-10426672 None:intergenic 35.0%
!! CTTCTTGTTGTTATCCTTCT+TGG - chr6_2:10426651-10426670 Msa0909260:intron 35.0%
AACAACATCAACAACAATGG+AGG + chr6_2:10426772-10426791 None:intergenic 35.0%
AGAATGAGAAAAGGGAGAAA+AGG - chr6_2:10426840-10426859 Msa0909260:intron 35.0%
AGAAAAGGGAGAAAAGGAAA+TGG - chr6_2:10426846-10426865 Msa0909260:intron 35.0%
CAAACAACTGTAGCAAGAAT+CGG + chr6_2:10426893-10426912 None:intergenic 35.0%
AATGATAGGTATACCACCAT+AGG + chr6_2:10427020-10427039 None:intergenic 35.0%
ATCTGTGAATTATGATGGCA+CGG + chr6_2:10427120-10427139 None:intergenic 35.0%
TTGCCATCTGTGAATTATGA+TGG + chr6_2:10427125-10427144 None:intergenic 35.0%
ATCATAATTCACAGATGGCA+AGG - chr6_2:10427124-10427143 Msa0909260:intron 35.0%
AACACTTATAAGCTCTTTGG+TGG - chr6_2:10427197-10427216 Msa0909260:intron 35.0%
CATCCTTGAAGTCATTGATA+AGG - chr6_2:10427253-10427272 Msa0909260:intron 35.0%
AAGTATTCCATGTAGCCATT+TGG + chr6_2:10427344-10427363 None:intergenic 35.0%
AATGGCTACATGGAATACTT+TGG - chr6_2:10427344-10427363 Msa0909260:intron 35.0%
!! CTAGTAATGGGTTATTGCAT+TGG - chr6_2:10427445-10427464 Msa0909260:CDS 35.0%
! TTCTAAGAAATGGTGCTCTC+TGG - chr6_2:10420069-10420088 Msa0909260:three_prime_UTR 40.0%
! AGATTGGCATCACACTGATT+CGG - chr6_2:10420218-10420237 Msa0909260:three_prime_UTR 40.0%
!! ACACTGATTCGGTTAAACAC+TGG - chr6_2:10420229-10420248 Msa0909260:three_prime_UTR 40.0%
AAACACTGGACTTACGTCAT+AGG - chr6_2:10420243-10420262 Msa0909260:exon 40.0%
AAATCAGGGGTAACCATGTT+TGG + chr6_2:10420479-10420498 Msa0909270:intron 40.0%
! ATAAGGTTCTCTGGGGAATA+TGG + chr6_2:10420606-10420625 Msa0909270:intron 40.0%
! CAAAGGGTGTACAGACTAAA+GGG + chr6_2:10420977-10420996 Msa0909270:CDS 40.0%
! CATAGGAATCGCAGCAATTT+TGG + chr6_2:10421119-10421138 Msa0909270:intron 40.0%
! CATTACGGGTTACTGTTCAT+AGG + chr6_2:10421136-10421155 Msa0909270:intron 40.0%
CTATGAACAGTAACCCGTAA+TGG - chr6_2:10421134-10421153 Msa0909260:intron 40.0%
AAGTGACTTACACCTCTTCA+CGG - chr6_2:10421179-10421198 Msa0909260:intron 40.0%
AGGATAATCAAGGGAGACTA+TGG + chr6_2:10421210-10421229 Msa0909270:CDS 40.0%
GATTCAAGATTGAGCTGCTT+TGG - chr6_2:10421340-10421359 Msa0909260:intron 40.0%
CTGAGAGCAAACCTAAAACT+GGG + chr6_2:10421435-10421454 Msa0909270:CDS 40.0%
TCTGAGAGCAAACCTAAAAC+TGG + chr6_2:10421436-10421455 Msa0909270:CDS 40.0%
! CTCCCTAAACCTTGTTTGAA+AGG - chr6_2:10421624-10421643 Msa0909260:intron 40.0%
ACAACACTAATCTACCATGG+AGG + chr6_2:10421716-10421735 Msa0909270:CDS 40.0%
GAGACAACACTAATCTACCA+TGG + chr6_2:10421719-10421738 Msa0909270:CDS 40.0%
GTAGATTAGTGTTGTCTCGA+GGG - chr6_2:10421721-10421740 Msa0909260:intron 40.0%
TAGATTAGTGTTGTCTCGAG+GGG - chr6_2:10421722-10421741 Msa0909260:intron 40.0%
! CGCAAGACTTTAGAGGAAAA+AGG + chr6_2:10421753-10421772 Msa0909270:CDS 40.0%
! TTTTTCGCGCAAGACTTTAG+AGG + chr6_2:10421760-10421779 Msa0909270:CDS 40.0%
TGACCACGATTATTGACCAT+GGG - chr6_2:10422064-10422083 Msa0909260:intron 40.0%
GAAGGAGCTAATATAAAGGG+AGG - chr6_2:10422769-10422788 Msa0909260:intron 40.0%
ATCGTAACCATGATAGAGGT+CGG + chr6_2:10422804-10422823 None:intergenic 40.0%
TCACATCGTAACCATGATAG+AGG + chr6_2:10422808-10422827 None:intergenic 40.0%
ATAGTATAGCAGATACGGGT+AGG + chr6_2:10422835-10422854 None:intergenic 40.0%
CGAGCGAGTAGTCATAATTA+TGG - chr6_2:10422909-10422928 Msa0909260:intron 40.0%
GAAGTGTATAAGGGATGTCT+TGG - chr6_2:10422954-10422973 Msa0909260:intron 40.0%
GTGGCTCAACTCATTGAAAA+TGG - chr6_2:10423146-10423165 Msa0909260:intron 40.0%
AGAGAAACACTAACCTGCAA+TGG + chr6_2:10423225-10423244 None:intergenic 40.0%
TGTCCATGAGTTTGACTGAT+AGG - chr6_2:10423292-10423311 Msa0909260:intron 40.0%
GATTGGAAGGGAATTTGATG+TGG - chr6_2:10423444-10423463 Msa0909260:intron 40.0%
!! CTGGTAATTCAAAGAGCGTT+TGG - chr6_2:10423484-10423503 Msa0909260:intron 40.0%
!! TTTTGGAAGGATTGGTGGAT+AGG - chr6_2:10423526-10423545 Msa0909260:intron 40.0%
TATGGGCCCTTAATGTTTCT+TGG + chr6_2:10423730-10423749 None:intergenic 40.0%
GGTTAAATGCTTCCTCGATT+TGG - chr6_2:10423834-10423853 Msa0909260:intron 40.0%
! TGCGTCTTTGATTTCATCAG+AGG + chr6_2:10424374-10424393 None:intergenic 40.0%
GAGTATATCACGCCTAAAGA+CGG + chr6_2:10424685-10424704 None:intergenic 40.0%
TAGTCTCAGTTCTGTTGTTG+TGG + chr6_2:10425556-10425575 None:intergenic 40.0%
TGCCATGTACAACATAGCAT+TGG - chr6_2:10425818-10425837 Msa0909260:intron 40.0%
TGCCAATGCTATGTTGTACA+TGG + chr6_2:10425823-10425842 None:intergenic 40.0%
GTTATTCTCACCCGTTACAA+CGG + chr6_2:10425867-10425886 None:intergenic 40.0%
! ATGGAGTATCAGATCTGATC+TGG + chr6_2:10426017-10426036 None:intergenic 40.0%
CAACCAAAGAAAGACAAGGA+AGG + chr6_2:10426180-10426199 None:intergenic 40.0%
ATCACAGAAGCTTAAGAGGA+AGG + chr6_2:10426214-10426233 None:intergenic 40.0%
! TGTGATTGTGAAGGGTACAA+TGG + chr6_2:10426262-10426281 None:intergenic 40.0%
TTGTTATCCTTCTTGGGAAG+TGG - chr6_2:10426658-10426677 Msa0909260:intron 40.0%
GGAGATAAGAACAACAATGG+AGG + chr6_2:10426718-10426737 None:intergenic 40.0%
GGAGGAGATAAGAACAACAA+TGG + chr6_2:10426721-10426740 None:intergenic 40.0%
GAAGAAAACAACAACAGTGG+AGG + chr6_2:10426739-10426758 None:intergenic 40.0%
TCTGTGAATTATGATGGCAC+GGG + chr6_2:10427119-10427138 None:intergenic 40.0%
GTGCCATCATAATTCACAGA+TGG - chr6_2:10427119-10427138 Msa0909260:intron 40.0%
CACCCTTATCAATGACTTCA+AGG + chr6_2:10427259-10427278 None:intergenic 40.0%
GAAGTCATTGATAAGGGTGA+TGG - chr6_2:10427260-10427279 Msa0909260:intron 40.0%
ATTCCATGTAGCCATTTGGA+GGG + chr6_2:10427340-10427359 None:intergenic 40.0%
TATTCCATGTAGCCATTTGG+AGG + chr6_2:10427341-10427360 None:intergenic 40.0%
!! AATGGGTTATTGCATTGGGT+TGG - chr6_2:10427450-10427469 Msa0909260:CDS 40.0%
! GGTAAGCTCAGTACTGAAGT+TGG - chr6_2:10420090-10420109 Msa0909260:three_prime_UTR 45.0%
AGATTGTAGAACTTGTCGGC+GGG + chr6_2:10420126-10420145 None:intergenic 45.0%
CAGATTGTAGAACTTGTCGG+CGG + chr6_2:10420127-10420146 None:intergenic 45.0%
! CCAAAGGGTGTACAGACTAA+AGG + chr6_2:10420978-10420997 Msa0909270:CDS 45.0%
CCTTTAGTCTGTACACCCTT+TGG - chr6_2:10420975-10420994 Msa0909260:intron 45.0%
! GTCTTTCAAGTGAGAGAGAG+AGG + chr6_2:10421089-10421108 Msa0909270:intron 45.0%
AGCGACGAACAAACCCATTA+CGG + chr6_2:10421151-10421170 Msa0909270:intron 45.0%
!! TCCTCTTTGCTGTTATCGTC+CGG - chr6_2:10421226-10421245 Msa0909260:intron 45.0%
AAACTGGGAACCCACAAGAT+TGG + chr6_2:10421420-10421439 Msa0909270:CDS 45.0%
! TCTTGTGGGTTCCCAGTTTT+AGG - chr6_2:10421421-10421440 Msa0909260:intron 45.0%
AGATCCTCCAAAACCTGTTG+TGG - chr6_2:10421527-10421546 Msa0909260:intron 45.0%
! AAAACTGCGGTTTTTGACCG+AGG + chr6_2:10421562-10421581 Msa0909270:intron 45.0%
GGTAGATTAGTGTTGTCTCG+AGG - chr6_2:10421720-10421739 Msa0909260:intron 45.0%
GTGACCACGATTATTGACCA+TGG - chr6_2:10422063-10422082 Msa0909260:intron 45.0%
GACCACGATTATTGACCATG+GGG - chr6_2:10422065-10422084 Msa0909260:intron 45.0%
AACCCCATGGTCAATAATCG+TGG + chr6_2:10422070-10422089 None:intergenic 45.0%
TATGCAAGGAGGTCTTTGCA+AGG + chr6_2:10422227-10422246 None:intergenic 45.0%
! AAGGGTGTATGAAGTGCCTT+TGG - chr6_2:10422266-10422285 Msa0909260:intron 45.0%
CACAGGCTGAAATGCTACAA+AGG + chr6_2:10422364-10422383 None:intergenic 45.0%
CTTTGTAGCATTTCAGCCTG+TGG - chr6_2:10422362-10422381 Msa0909260:intron 45.0%
AAAGGGAAAATGCTAGCCAC+AGG + chr6_2:10422381-10422400 None:intergenic 45.0%
! AGATGTACCGACCTCTATCA+TGG - chr6_2:10422794-10422813 Msa0909260:intron 45.0%
TTGGTATGGGTAGGTATCAG+AGG - chr6_2:10423026-10423045 Msa0909260:intron 45.0%
TGGTATGGGTAGGTATCAGA+GGG - chr6_2:10423027-10423046 Msa0909260:intron 45.0%
GAAATAGGTGGAAAGCCAGA+AGG - chr6_2:10423373-10423392 Msa0909260:intron 45.0%
GGAAAGCCAGAAGGAATGAT+AGG - chr6_2:10423382-10423401 Msa0909260:intron 45.0%
AAGCCAGAAGGAATGATAGG+TGG - chr6_2:10423385-10423404 Msa0909260:intron 45.0%
CTTCCACCTATCATTCCTTC+TGG + chr6_2:10423391-10423410 None:intergenic 45.0%
AGGAATGATAGGTGGAAGAC+TGG - chr6_2:10423393-10423412 Msa0909260:intron 45.0%
GATAGGTGGAAGACTGGATT+TGG - chr6_2:10423399-10423418 Msa0909260:intron 45.0%
! GTGGAAGACTGGATTTGGTA+TGG - chr6_2:10423404-10423423 Msa0909260:intron 45.0%
! GAAGACTGGATTTGGTATGG+TGG - chr6_2:10423407-10423426 Msa0909260:intron 45.0%
! CACATAAAGGGGCACAATCA+TGG + chr6_2:10423659-10423678 None:intergenic 45.0%
GAGTTTATCGCGCCTAAAGA+CGG - chr6_2:10425173-10425192 Msa0909260:intron 45.0%
CCTCAAGCAAATGCAGGAAT+TGG + chr6_2:10425769-10425788 None:intergenic 45.0%
CCAATTCCTGCATTTGCTTG+AGG - chr6_2:10425766-10425785 Msa0909260:intron 45.0%
TATGTTGTACATGGCAGAGG+AGG + chr6_2:10425814-10425833 None:intergenic 45.0%
TGCTATGTTGTACATGGCAG+AGG + chr6_2:10425817-10425836 None:intergenic 45.0%
!! AGCATTGGCAAACCTGTCAT+TGG - chr6_2:10425833-10425852 Msa0909260:intron 45.0%
ATTGGCAAACCTGTCATTGG+AGG - chr6_2:10425836-10425855 Msa0909260:intron 45.0%
ACACACCCTTCAAGCAGAAA+AGG - chr6_2:10426107-10426126 Msa0909260:intron 45.0%
! GGGATCCTTTTCTGCTTGAA+GGG + chr6_2:10426115-10426134 None:intergenic 45.0%
AAGGAAATGAAGGAGGAGGT+GGG + chr6_2:10426137-10426156 None:intergenic 45.0%
AAGGAAGGAAATGAAGGAGG+AGG + chr6_2:10426141-10426160 None:intergenic 45.0%
GAGAAGGAAGGAAATGAAGG+AGG + chr6_2:10426144-10426163 None:intergenic 45.0%
GGTGAGAAGGAAGGAAATGA+AGG + chr6_2:10426147-10426166 None:intergenic 45.0%
AAGAAAGACAAGGAAGGTGG+TGG + chr6_2:10426174-10426193 None:intergenic 45.0%
CCAAAGAAAGACAAGGAAGG+TGG + chr6_2:10426177-10426196 None:intergenic 45.0%
CCACCTTCCTTGTCTTTCTT+TGG - chr6_2:10426174-10426193 Msa0909260:intron 45.0%
GAAGCTTAAGAGGAAGGTTG+AGG + chr6_2:10426208-10426227 None:intergenic 45.0%
CATTTCACCACTTCCCAAGA+AGG + chr6_2:10426668-10426687 None:intergenic 45.0%
TAGAGTGGTATTGCCACCTA+TGG - chr6_2:10427001-10427020 Msa0909260:intron 45.0%
GATAGGTATACCACCATAGG+TGG + chr6_2:10427017-10427036 None:intergenic 45.0%
GAGGATATTGACCCTCCAAA+TGG - chr6_2:10427326-10427345 Msa0909260:intron 45.0%
!!! ATATTTTTGTATAAAAAAAA+AGG + chr6_2:10420891-10420910 Msa0909270:CDS 5.0%
!!! TTTTATACAAAAATATTTAT+TGG - chr6_2:10420895-10420914 Msa0909260:intron 5.0%
!!! TCATTTTTATTTTAATTTTT+TGG + chr6_2:10426530-10426549 None:intergenic 5.0%
TGTACACCCTTTGGTACCAC+CGG - chr6_2:10420984-10421003 Msa0909260:intron 50.0%
GGATGTGGCATCATTTGCCT+GGG - chr6_2:10421007-10421026 Msa0909260:intron 50.0%
GCGACGAACAAACCCATTAC+GGG + chr6_2:10421150-10421169 Msa0909270:intron 50.0%
!! GTAATGGGTTTGTTCGTCGC+TGG - chr6_2:10421150-10421169 Msa0909260:intron 50.0%
!! ACTATGGTGCTACCGTGAAG+AGG + chr6_2:10421194-10421213 Msa0909270:CDS 50.0%
TCCGGACGATAACAGCAAAG+AGG + chr6_2:10421230-10421249 Msa0909270:CDS 50.0%
AACTGAGAATCAGGAACGCG+CGG + chr6_2:10421257-10421276 Msa0909270:intron 50.0%
GTGCACACGAACTGAGAATC+AGG + chr6_2:10421266-10421285 Msa0909270:intron 50.0%
ACAGACGAAGGGAGTAGACA+TGG + chr6_2:10421487-10421506 Msa0909270:CDS 50.0%
! GAAGGAGCCACAACAGGTTT+TGG + chr6_2:10421537-10421556 Msa0909270:intron 50.0%
TGTTGTGGCTCCTTCTACCT+CGG - chr6_2:10421542-10421561 Msa0909260:intron 50.0%
! CGGTTTTTGACCGAGGTAGA+AGG + chr6_2:10421555-10421574 Msa0909270:intron 50.0%
! CAAAAACCGCAGTTTTGCGC+AGG - chr6_2:10421566-10421585 Msa0909260:intron 50.0%
ACAACACGTGAACAACCCCA+TGG + chr6_2:10422083-10422102 None:intergenic 50.0%
GCAGTGATCACGCCTAAAGA+CGG - chr6_2:10424749-10424768 Msa0909260:intron 50.0%
CGGCAAGTTTATCACGCCTA+AGG - chr6_2:10425381-10425400 Msa0909260:intron 50.0%
TGAGGTCCTCAAGCAAATGC+AGG + chr6_2:10425775-10425794 None:intergenic 50.0%
TGGAGGCAATGCCGTTGTAA+CGG - chr6_2:10425853-10425872 Msa0909260:intron 50.0%
AGAATAACGCGTGCAGTGCT+TGG - chr6_2:10425879-10425898 Msa0909260:intron 50.0%
!! GTTGTAGCGAAAGAGCACCT+GGG + chr6_2:10425910-10425929 None:intergenic 50.0%
!! AGTTGTAGCGAAAGAGCACC+TGG + chr6_2:10425911-10425930 None:intergenic 50.0%
CTTTCGCTACAACTACGCTC+AGG - chr6_2:10425917-10425936 Msa0909260:intron 50.0%
TTCCACACCCATAACCAGCA+CGG - chr6_2:10426069-10426088 Msa0909260:intron 50.0%
! GGGGATCCTTTTCTGCTTGA+AGG + chr6_2:10426116-10426135 None:intergenic 50.0%
AGGAAATGAAGGAGGAGGTG+GGG + chr6_2:10426136-10426155 None:intergenic 50.0%
GAAGGAAATGAAGGAGGAGG+TGG + chr6_2:10426138-10426157 None:intergenic 50.0%
! AAAGACAAGGAAGGTGGTGG+TGG + chr6_2:10426171-10426190 None:intergenic 50.0%
AGTGGTATTGCCACCTATGG+TGG - chr6_2:10427004-10427023 Msa0909260:intron 50.0%
ATGGCACTGCTGCTGCTAAA+TGG - chr6_2:10427279-10427298 Msa0909260:intron 50.0%
TGACCCTCCAAATGGCTACA+TGG - chr6_2:10427334-10427353 Msa0909260:intron 50.0%
GTACACCCTTTGGTACCACC+GGG - chr6_2:10420985-10421004 Msa0909260:intron 55.0%
TACACCCTTTGGTACCACCG+GGG - chr6_2:10420986-10421005 Msa0909260:intron 55.0%
ACATCCCCGGTGGTACCAAA+GGG + chr6_2:10420993-10421012 Msa0909270:CDS 55.0%
AAATGATGCCACATCCCCGG+TGG + chr6_2:10421003-10421022 Msa0909270:CDS 55.0%
GGCAAATGATGCCACATCCC+CGG + chr6_2:10421006-10421025 Msa0909270:CDS 55.0%
GGGATGTGGCATCATTTGCC+TGG - chr6_2:10421006-10421025 Msa0909260:intron 55.0%
TGTGGCATCATTTGCCTGGG+TGG - chr6_2:10421010-10421029 Msa0909260:intron 55.0%
TGAGAGAGAGAGGCTGTGTG+AGG + chr6_2:10421079-10421098 Msa0909270:intron 55.0%
CGTGTGCACTGTTCACCATC+TGG - chr6_2:10421277-10421296 Msa0909260:intron 55.0%
TGTTGCCGCTGCCAATCTTG+TGG - chr6_2:10421406-10421425 Msa0909260:intron 55.0%
GTTGCCGCTGCCAATCTTGT+GGG - chr6_2:10421407-10421426 Msa0909260:intron 55.0%
GGAACCCACAAGATTGGCAG+CGG + chr6_2:10421414-10421433 Msa0909270:CDS 55.0%
CTACTCCCTTCGTCTGTCCT+TGG - chr6_2:10421490-10421509 Msa0909260:intron 55.0%
CAAGGCCAAGGACAGACGAA+GGG + chr6_2:10421498-10421517 Msa0909270:CDS 55.0%
! TCTGAGACCAAGCAAGGCCA+AGG + chr6_2:10421510-10421529 Msa0909270:CDS 55.0%
! GGAGGATCTGAGACCAAGCA+AGG + chr6_2:10421516-10421535 Msa0909270:CDS 55.0%
!! GGAGCCACAACAGGTTTTGG+AGG + chr6_2:10421534-10421553 Msa0909270:CDS 55.0%
GAGGTAGAAGGAGCCACAAC+AGG + chr6_2:10421543-10421562 Msa0909270:intron 55.0%
TGGCAGTAAGACTGCAGCTC+TGG - chr6_2:10422857-10422876 Msa0909260:intron 55.0%
GGCAGTAAGACTGCAGCTCT+GGG - chr6_2:10422858-10422877 Msa0909260:intron 55.0%
!! TGCAGCTCTGGGAGCAGTTA+AGG - chr6_2:10422869-10422888 Msa0909260:intron 55.0%
ATGGCAGAGGAGGTTGCTTC+TGG + chr6_2:10425804-10425823 None:intergenic 55.0%
ACGGCATTGCCTCCAATGAC+AGG + chr6_2:10425848-10425867 None:intergenic 55.0%
GGAGGCAATGCCGTTGTAAC+GGG - chr6_2:10425854-10425873 Msa0909260:intron 55.0%
ACCCATAACCAGCACGGCAA+GGG - chr6_2:10426075-10426094 Msa0909260:intron 55.0%
!! ACCCTTGCCGTGCTGGTTAT+GGG + chr6_2:10426079-10426098 None:intergenic 55.0%
GGAAATGAAGGAGGAGGTGG+GGG + chr6_2:10426135-10426154 None:intergenic 55.0%
CCACTCTACACCCTTCCTGT+TGG + chr6_2:10426989-10427008 None:intergenic 55.0%
! CCAACAGGAAGGGTGTAGAG+TGG - chr6_2:10426986-10427005 Msa0909260:intron 55.0%
CACATCCCCGGTGGTACCAA+AGG + chr6_2:10420994-10421013 Msa0909270:CDS 60.0%
CTTTGGTACCACCGGGGATG+TGG - chr6_2:10420992-10421011 Msa0909260:intron 60.0%
TCAGGAACGCGCGGATGATC+CGG + chr6_2:10421248-10421267 Msa0909270:intron 60.0%
GCAAGGCCAAGGACAGACGA+AGG + chr6_2:10421499-10421518 Msa0909270:CDS 60.0%
!! CGTCTGTCCTTGGCCTTGCT+TGG - chr6_2:10421500-10421519 Msa0909260:intron 60.0%
GGAGAGCCTGCGCAAAACTG+CGG + chr6_2:10421575-10421594 Msa0909270:intron 60.0%
! GGTTGCTTCTGGCTGTGCTG+AGG + chr6_2:10425793-10425812 None:intergenic 60.0%
!! TGCCGTGCTGGTTATGGGTG+TGG + chr6_2:10426074-10426093 None:intergenic 60.0%
CACCCATAACCAGCACGGCA+AGG - chr6_2:10426074-10426093 Msa0909260:intron 60.0%
!! GACCCTTGCCGTGCTGGTTA+TGG + chr6_2:10426080-10426099 None:intergenic 60.0%
GTATGTGACCCTTGCCGTGC+TGG + chr6_2:10426086-10426105 None:intergenic 60.0%
!! GGTGGTGGTGGTGAGAAGGA+AGG + chr6_2:10426156-10426175 None:intergenic 60.0%
!! AGGTGGTGGTGGTGGTGAGA+AGG + chr6_2:10426160-10426179 None:intergenic 60.0%
!! GACAAGGAAGGTGGTGGTGG+TGG + chr6_2:10426168-10426187 None:intergenic 60.0%
TGCAGTGCTTGGTCACGCCC+AGG - chr6_2:10425890-10425909 Msa0909260:intron 65.0%
Chromosome Type Strat End Strand Name
chr6_2 gene 10420029 10427647 10420029 ID=Msa0909260;Name=Msa0909260
chr6_2 mRNA 10420029 10427647 10420029 ID=Msa0909260-mRNA-1;Parent=Msa0909260;Name=Msa0909260-mRNA-1;_AED=0.18;_eAED=0.18;_QI=49|1|1|1|0|1|2|226|156
chr6_2 exon 10420029 10420538 10420029 ID=Msa0909260-mRNA-1:exon:2706;Parent=Msa0909260-mRNA-1
chr6_2 exon 10427412 10427647 10427412 ID=Msa0909260-mRNA-1:exon:2705;Parent=Msa0909260-mRNA-1
chr6_2 five_prime_UTR 10427599 10427647 10427599 ID=Msa0909260-mRNA-1:five_prime_utr;Parent=Msa0909260-mRNA-1
chr6_2 CDS 10427412 10427598 10427412 ID=Msa0909260-mRNA-1:cds;Parent=Msa0909260-mRNA-1
chr6_2 CDS 10420255 10420538 10420255 ID=Msa0909260-mRNA-1:cds;Parent=Msa0909260-mRNA-1
chr6_2 three_prime_UTR 10420029 10420254 10420029 ID=Msa0909260-mRNA-1:three_prime_utr;Parent=Msa0909260-mRNA-1
Gene Sequence

>Msa0909260

ATGGTGCTCTCTGGTAAGCTCAGTACTGAAGTTGGAATCAAAACACCCGCCGACAAGTTCTACAATCTGTTCATAACAGAACTTCATGAAGTGCAAAACCTTTGTGAAAGAGTTCATCATACAAAACTTCATGAAGGTGAAGATTGGCATCACACTGATTCGGTTAAACACTGGACTTACGTCATAGATGGCAAGGTACATACATGTCACGAGAGAGTTGAAGAAGTTGATGAACTGAATAAAAAAAACACTTATAAGCTCTTTGGTGGAGATATTGATGAGCACTATAAGGTCTTTAAGCTCATCCTTGAAGTCATTGATAAGGGTGATGGCACTGCTGCTGCTAAATGGACAGTTGAATATGAAAAGATCAATGAGGATATTGACCCTCCAAATGGCTACATGGAATACTTTGGCAAAATCACTAGAGATGTTGATGCTCATCTTGCCAAAGCAAAGATAGCTCTATAA

Protein sequence

>Msa0909260

MVLSGKLSTEVGIKTPADKFYNLFITELHEVQNLCERVHHTKLHEGEDWHHTDSVKHWTYVIDGKVHTCHERVEEVDELNKKNTYKLFGGDIDEHYKVFKLILEVIDKGDGTAAAKWTVEYEKINEDIDPPNGYMEYFGKITRDVDAHLAKAKIAL*